PeakID (cmd=annotatePeaks.pl S10_S10_SEACR.relaxed.bed hg38 -annStats S10_S10_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chrY 14969329 14969466 135 - chrY:14969333-14969466 NA NA NA NA NA chrX-28 98978110 98978520 209 - chrX:98978228-98978236 NA NA NA NA NA chrX-27 94999139 94999552 259 - chrX:94999244-94999349 NA NA NA NA NA chrX-26 94784502 94784954 252 - chrX:94784547-94784599 NA NA NA NA NA chrX-25 93699860 93700094 129 - chrX:93699945-93699969 NA NA NA NA NA chrX-24 89179913 89180136 124 - chrX:89179995-89180020 NA NA NA NA NA chrX-23 88545085 88545485 349 - chrX:88545127-88545425 NA NA NA NA NA chrX-22 87219650 87220310 405 - chrX:87219876-87220026 NA NA NA NA NA chrX-21 86830845 86831176 181 - chrX:86831080-86831111 NA NA NA NA NA chrX-20 85340236 85340667 244 - chrX:85340284-85340341 NA NA NA NA NA chrX-19 82002929 82003359 311 - chrX:82002934-82003126 NA NA NA NA NA chrX-18 80879460 80879933 255 - chrX:80879647-80879684 NA NA NA NA NA chrX-17 78793383 78793501 116 - chrX:78793383-78793497 NA NA NA NA NA chrX-16 77901519 77901702 133 - chrX:77901610-77901693 NA NA NA NA NA chrX-15 77157212 77157515 199 - chrX:77157261-77157356 NA NA NA NA NA chrX-14 76617697 76618427 371 - chrX:76617975-76617987 NA NA NA NA NA chrX-13 76473587 76473916 189 - chrX:76473752-76473801 NA NA NA NA NA chrX-12 74674962 74675297 266 - chrX:74675036-74675233 NA NA NA NA NA chrX-11 55072591 55072792 118 - chrX:55072645-55072680 NA NA NA NA NA chrX-10 53401335 53401489 127 - chrX:53401379-53401479 NA NA NA NA NA chrX-9 48937586 48937878 208 - chrX:48937717-48937841 NA NA NA NA NA chrX-8 45875274 45875663 322 - chrX:45875301-45875556 NA NA NA NA NA chrX-7 45570408 45571066 333 - chrX:45570545-45570553 NA NA NA NA NA chrX-6 44952339 44952637 157 - chrX:44952550-44952566 NA NA NA NA NA chrX-5 44813760 44814246 307 - chrX:44813837-44813965 NA NA NA NA NA chrX-4 44118022 44118230 134 - chrX:44118099-44118159 NA NA NA NA NA chrX-3 40136535 40137148 347 - chrX:40136737-40136818 NA NA NA NA NA chrX-37 155267426 155267909 299 - chrX:155267785-155267900 NA NA NA NA NA chrX-2 15114194 15114520 268 - chrX:15114241-15114451 NA NA NA NA NA chrX-36 146829076 146829633 294 - chrX:146829288-146829319 NA NA NA NA NA chrX-35 131394722 131395338 368 - chrX:131395168-131395288 NA NA NA NA NA chrX-34 123536427 123536852 241 - chrX:123536758-123536815 NA NA NA NA NA chrX 12194159 12194523 199 - chrX:12194308-12194342 NA NA NA NA NA chrX-33 119785627 119785923 176 - chrX:119785721-119785777 NA NA NA NA NA chrX-32 119697266 119697528 166 - chrX:119697327-119697397 NA NA NA NA NA chrX-31 116479883 116480083 132 - chrX:116479951-116480015 NA NA NA NA NA chrX-30 110689397 110689617 215 - chrX:110689399-110689609 NA NA NA NA NA chrX-29 109527108 109527287 138 - chrX:109527145-109527242 NA NA NA NA NA chrUn_KI270442v1-2 83165 83398 165 - chrUn_KI270442v1:83223-83320 NA NA NA NA NA chrUn_KI270442v1 75896 76180 189 - chrUn_KI270442v1:76037-76131 NA NA NA NA NA chr9-63 99624357 99624799 244 - chr9:99624689-99624735 NA NA NA NA NA chr9-62 99554291 99554569 145 - chr9:99554397-99554409 NA NA NA NA NA chr9-61 98702559 98702735 137 - chr9:98702565-98702663 NA NA NA NA NA chr9-6 9846518 9847035 374 - chr9:9846685-9846916 NA NA NA NA NA chr9-60 98155660 98156089 356 - chr9:98155743-98156026 NA NA NA NA NA chr9-5 9729278 9729550 155 - chr9:9729328-9729366 NA NA NA NA NA chr9-59 96738860 96739103 168 - chr9:96738992-96739085 NA NA NA NA NA chr9-4 9672862 9673100 128 - chr9:9672981-9672999 NA NA NA NA NA chr9-58 95621182 95621639 259 - chr9:95621267-95621328 NA NA NA NA NA chr9-57 95131975 95132166 139 - chr9:95132001-95132088 NA NA NA NA NA chr9-56 94839435 94839745 157 - chr9:94839529-94839533 NA NA NA NA NA chr9-55 93389946 93390202 199 - chr9:93389960-93390102 NA NA NA NA NA chr9-54 91699320 91699899 429 - chr9:91699573-91699852 NA NA NA NA NA chr9-53 90852215 90852446 124 - chr9:90852271-90852288 NA NA NA NA NA chr9-52 90315961 90316553 377 - chr9:90316109-90316271 NA NA NA NA NA chr9-51 90147418 90147746 187 - chr9:90147511-90147557 NA NA NA NA NA chr9-50 89349317 89349531 132 - chr9:89349428-89349478 NA NA NA NA NA chr9-49 88953264 88953542 211 - chr9:88953381-88953525 NA NA NA NA NA chr9-48 87257889 87258263 262 - chr9:87258101-87258251 NA NA NA NA NA chr9-47 86758718 86759197 283 - chr9:86758912-86758999 NA NA NA NA NA chr9-46 86720254 86720431 149 - chr9:86720291-86720412 NA NA NA NA NA chr9-45 85146886 85147318 241 - chr9:85146957-85147007 NA NA NA NA NA chr9-44 85134654 85135036 222 - chr9:85134801-85134863 NA NA NA NA NA chr9-43 84585051 84585800 386 - chr9:84585146-84585169 NA NA NA NA NA chr9-42 83148803 83149033 199 - chr9:83148843-83149011 NA NA NA NA NA chr9-41 82987306 82987573 173 - chr9:82987471-82987550 NA NA NA NA NA chr9-3 8262596 8263106 285 - chr9:8262683-8262743 NA NA NA NA NA chr9-40 81248393 81248723 168 - chr9:81248579-81248585 NA NA NA NA NA chr9-39 81080932 81081259 208 - chr9:81081024-81081113 NA NA NA NA NA chr9-38 79925141 79925553 219 - chr9:79925507-79925533 NA NA NA NA NA chr9-37 79427996 79428323 232 - chr9:79428137-79428274 NA NA NA NA NA chr9-36 79269755 79270039 156 - chr9:79269977-79270005 NA NA NA NA NA chr9-35 77087405 77087721 184 - chr9:77087470-77087522 NA NA NA NA NA chr9-34 76467171 76467756 344 - chr9:76467409-76467512 NA NA NA NA NA chr9-33 75177265 75177656 289 - chr9:75177400-75177587 NA NA NA NA NA chr9-32 74887760 74888223 388 - chr9:74887769-74888082 NA NA NA NA NA chr9-31 74558751 74559078 190 - chr9:74558910-74558963 NA NA NA NA NA chr9-30 74081931 74082207 176 - chr9:74081944-74082020 NA NA NA NA NA chr9-29 73341657 73341942 171 - chr9:73341843-73341900 NA NA NA NA NA chr9-28 72279481 72279769 172 - chr9:72279616-72279672 NA NA NA NA NA chr9-27 70277745 70277941 149 - chr9:70277809-70277911 NA NA NA NA NA chr9-2 3740601 3740876 188 - chr9:3740673-3740774 NA NA NA NA NA chr9-26 37304530 37304757 199 - chr9:37304565-37304736 NA NA NA NA NA chr9-25 37240638 37240989 206 - chr9:37240808-37240869 NA NA NA NA NA chr9-24 36136389 36136668 217 - chr9:36136463-36136618 NA NA NA NA NA chr9-23 34292487 34293308 430 - chr9:34293013-34293052 NA NA NA NA NA chr9-22 32256910 32257375 352 - chr9:32257038-32257277 NA NA NA NA NA chr9-21 30171372 30171587 134 - chr9:30171482-30171535 NA NA NA NA NA chr9-20 29900848 29901274 242 - chr9:29901023-29901081 NA NA NA NA NA chr9-19 29798428 29798704 222 - chr9:29798504-29798672 NA NA NA NA NA chr9-18 29435759 29436467 371 - chr9:29436313-29436347 NA NA NA NA NA chr9-17 28809901 28810248 224 - chr9:28809985-28810086 NA NA NA NA NA chr9-16 28153344 28153619 148 - chr9:28153384-28153405 NA NA NA NA NA chr9-15 27229271 27229444 113 - chr9:27229374-27229427 NA NA NA NA NA chr9-14 27179229 27179655 243 - chr9:27179309-27179369 NA NA NA NA NA chr9-13 26964527 26965058 422 - chr9:26964646-26964959 NA NA NA NA NA chr9 2634613 2634897 177 - chr9:2634819-2634889 NA NA NA NA NA chr9-12 23890751 23890952 200 - chr9:23890751-23890950 NA NA NA NA NA chr9-11 19890665 19890940 170 - chr9:19890865-19890930 NA NA NA NA NA chr9-10 14474111 14474295 131 - chr9:14474121-14474199 NA NA NA NA NA chr9-90 136667730 136668061 176 - chr9:136667869-136667890 NA NA NA NA NA chr9-89 135163500 135163958 329 - chr9:135163658-135163858 NA NA NA NA NA chr9-88 133964178 133964406 181 - chr9:133964260-133964394 NA NA NA NA NA chr9-87 133123006 133123681 408 - chr9:133123338-133123479 NA NA NA NA NA chr9-86 133036370 133036644 138 - chr9:133036574-133036576 NA NA NA NA NA chr9-85 132388591 132388878 186 - chr9:132388742-132388827 NA NA NA NA NA chr9-84 131581788 131582232 231 - chr9:131582088-131582106 NA NA NA NA NA chr9-83 131246080 131246392 184 - chr9:131246314-131246370 NA NA NA NA NA chr9-9 13117928 13118300 262 - chr9:13118017-13118169 NA NA NA NA NA chr9-82 130758120 130758470 330 - chr9:130758153-130758463 NA NA NA NA NA chr9-81 128479830 128480150 177 - chr9:128479864-128479898 NA NA NA NA NA chr9-80 128227809 128228118 165 - chr9:128227997-128228018 NA NA NA NA NA chr9-79 127870226 127870563 184 - chr9:127870395-127870426 NA NA NA NA NA chr9-78 126925830 126926036 121 - chr9:126925885-126925921 NA NA NA NA NA chr9-77 123684833 123685200 185 - chr9:123685024-123685027 NA NA NA NA NA chr9-76 123432468 123432833 294 - chr9:123432582-123432805 NA NA NA NA NA chr9-75 123036339 123036713 227 - chr9:123036549-123036629 NA NA NA NA NA chr9-74 122863055 122863320 164 - chr9:122863163-122863226 NA NA NA NA NA chr9-73 121002126 121002342 193 - chr9:121002166-121002336 NA NA NA NA NA chr9-8 11508721 11508975 157 - chr9:11508832-11508892 NA NA NA NA NA chr9-72 112768535 112768733 127 - chr9:112768636-112768692 NA NA NA NA NA chr9-71 112535426 112536027 319 - 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248 - chr8:90235247-90235379 NA NA NA NA NA chr8-69 89433369 89433566 143 - chr8:89433419-89433508 NA NA NA NA NA chr8-68 89131383 89131550 131 - chr8:89131389-89131484 NA NA NA NA NA chr8-67 88265814 88266119 175 - chr8:88265924-88265969 NA NA NA NA NA chr8-6 8774706 8775071 230 - chr8:8774783-8774878 NA NA NA NA NA chr8-66 87296637 87296865 142 - chr8:87296790-87296846 NA NA NA NA NA chr8-65 86872039 86872233 161 - chr8:86872040-86872168 NA NA NA NA NA chr8-64 86660343 86660550 127 - chr8:86660417-86660464 NA NA NA NA NA chr8-63 84562442 84562682 173 - chr8:84562576-84562682 NA NA NA NA NA chr8-62 84528272 84528629 189 - chr8:84528422-84528443 NA NA NA NA NA chr8-61 84305715 84305892 140 - chr8:84305739-84305842 NA NA NA NA NA chr8-60 83744772 83745081 251 - chr8:83744780-83744973 NA NA NA NA NA chr8-59 83111277 83111485 173 - chr8:83111314-83111452 NA NA NA NA NA chr8-58 81811525 81811906 222 - chr8:81811623-81811686 NA NA NA NA NA chr8-57 81317526 81317855 168 - 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NA NA NA chr8-3 4771829 4772193 228 - chr8:4771868-4771984 NA NA NA NA NA chr8-2 4459989 4460437 325 - chr8:4460063-4460265 NA NA NA NA NA chr8-30 40594347 40594565 129 - chr8:40594489-40594529 NA NA NA NA NA chr8 3719188 3719393 115 - chr8:3719216-3719241 NA NA NA NA NA chr8-29 34794861 34795269 349 - chr8:34794937-34795227 NA NA NA NA NA chr8-28 34293220 34293708 249 - chr8:34293384-34293394 NA NA NA NA NA chr8-27 30470538 30471064 395 - chr8:30470696-30470960 NA NA NA NA NA chr8-26 30188913 30189498 305 - chr8:30189078-30189103 NA NA NA NA NA chr8-25 29027424 29027740 195 - chr8:29027496-29027570 NA NA NA NA NA chr8-24 25994405 25994825 212 - chr8:25994597-25994601 NA NA NA NA NA chr8-23 25410115 25410369 219 - chr8:25410117-25410301 NA NA NA NA NA chr8-22 25137899 25138150 158 - chr8:25137952-25138017 NA NA NA NA NA chr8-21 24946823 24947223 235 - chr8:24946907-24946977 NA NA NA NA NA chr8-20 24772592 24773280 382 - chr8:24772984-24773060 NA NA NA NA NA chr8-19 24692682 24693061 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NA NA NA NA chr10-99 75752479 75752846 221 - chr10:75752748-75752823 NA NA NA NA NA chr10-98 75489867 75490085 196 - chr10:75489902-75490076 NA NA NA NA NA chr10-97 74868766 74869133 212 - chr10:74868936-74868993 NA NA NA NA NA chr10-96 74142502 74142831 284 - chr10:74142532-74142771 NA NA NA NA NA chr10-95 73940840 73941257 254 - chr10:73941034-73941125 NA NA NA NA NA chr10-94 73878130 73878677 339 - chr10:73878236-73878367 NA NA NA NA NA chr10-93 73249018 73249398 276 - chr10:73249120-73249348 NA NA NA NA NA chr10-92 73219399 73219755 205 - chr10:73219550-73219604 NA NA NA NA NA chr10-91 73077897 73078165 164 - chr10:73077980-73078040 NA NA NA NA NA chr10-90 72692228 72692891 453 - chr10:72692495-72692873 NA NA NA NA NA chr10-89 71832474 71832832 249 - chr10:71832509-71832649 NA NA NA NA NA chr10-88 71584689 71584993 163 - chr10:71584863-71584885 NA NA NA NA NA chr10-87 70820925 70821315 209 - chr10:70821148-70821176 NA NA NA NA NA chr10-86 69977375 69977832 375 - chr10:69977467-69977760 NA NA NA NA NA chr10-85 69952411 69952883 250 - chr10:69952518-69952546 NA NA NA NA NA chr10-84 68965314 68965595 214 - chr10:68965378-68965525 NA NA NA NA NA chr10-83 68028296 68028764 282 - chr10:68028545-68028641 NA NA NA NA NA chr10-82 66093633 66093908 145 - chr10:66093746-66093761 NA NA NA NA NA chr10-81 65726992 65727371 378 - chr10:65726994-65727371 NA NA NA NA NA chr10-80 65632787 65633003 200 - chr10:65632814-65632998 NA NA NA NA NA chr10-79 61549820 61550217 222 - chr10:61550132-61550179 NA NA NA NA NA chr10-78 61027364 61027526 124 - chr10:61027384-61027470 NA NA NA NA NA chr10-77 60080710 60081107 261 - chr10:60080853-60080978 NA NA NA NA NA chr10-76 59896174 59896390 184 - chr10:59896226-59896378 NA NA NA NA NA chr10-3 5983581 5983867 212 - chr10:5983663-5983801 NA NA NA NA NA chr10-75 58287384 58287695 230 - chr10:58287448-58287597 NA NA NA NA NA chr10-74 58188190 58188418 155 - chr10:58188269-58188351 NA NA NA NA NA chr10-73 57911439 57911816 208 - chr10:57911541-57911580 NA NA NA NA NA chr10-72 57772713 57772973 186 - chr10:57772728-57772840 NA NA NA NA NA chr10-2 5757656 5757934 185 - chr10:5757754-5757846 NA NA NA NA NA chr10-71 57243609 57243806 188 - chr10:57243614-57243793 NA NA NA NA NA chr10-70 56897596 56897816 138 - chr10:56897614-56897670 NA NA NA NA NA chr10-69 56867892 56868196 160 - chr10:56868073-56868089 NA NA NA NA NA chr10 5680696 5681133 225 - chr10:5680937-5680950 NA NA NA NA NA chr10-68 56699796 56700134 217 - chr10:56699824-56699920 NA NA NA NA NA chr10-67 56591520 56591734 129 - chr10:56591687-56591731 NA NA NA NA NA chr10-66 56536585 56536750 128 - chr10:56536586-56536677 NA NA NA NA NA chr10-65 56234777 56235122 295 - chr10:56234778-56235023 NA NA NA NA NA chr10-64 56007845 56008131 156 - chr10:56007985-56008011 NA NA NA NA NA chr10-63 55450662 55450857 158 - chr10:55450716-55450837 NA NA NA NA NA chr10-62 55054432 55054723 180 - chr10:55054623-55054692 NA NA NA NA NA chr10-61 53864156 53864541 193 - chr10:53864346-53864347 NA NA NA NA NA chr10-60 53484737 53485007 137 - chr10:53484864-53484868 NA NA NA NA NA chr10-59 52932254 52932637 207 - chr10:52932326-52932357 NA NA NA NA NA chr10-58 52078227 52078801 355 - chr10:52078495-52078631 NA NA NA NA NA chr10-57 49790000 49790548 285 - chr10:49790134-49790156 NA NA NA NA NA chr10-56 49461545 49461797 160 - chr10:49461669-49461737 NA NA NA NA NA chr10-55 49145215 49145440 168 - chr10:49145322-49145433 NA NA NA NA NA chr10-54 48745528 48745939 300 - chr10:48745651-48745840 NA NA NA NA NA chr10-53 46546497 46546973 360 - chr10:46546579-46546823 NA NA NA NA NA chr10-52 45610687 45611219 310 - chr10:45610782-45610870 NA NA NA NA NA chr10-51 44618523 44618874 265 - chr10:44618684-44618863 NA NA NA NA NA chr10-50 44577807 44578103 149 - chr10:44577974-44577976 NA NA NA NA NA chr10-49 44025311 44025634 184 - chr10:44025334-44025379 NA NA NA NA NA chr10-48 43569453 43569808 318 - chr10:43569466-43569747 NA NA NA NA NA chr10-47 42477350 42477502 132 - chr10:42477369-42477481 NA NA NA NA NA chr10-46 41910432 41910627 177 - chr10:41910467-41910626 NA NA NA NA NA chr10-45 41899192 41899364 118 - chr10:41899249-41899313 NA NA NA NA NA chr10-44 39248883 39249065 180 - chr10:39248887-39249065 NA NA NA NA NA chr10-43 39000553 39000893 176 - chr10:39000596-39000608 NA NA NA NA NA chr10-42 37833719 37834150 246 - chr10:37833927-37833988 NA NA NA NA NA chr10-41 37475148 37475349 118 - chr10:37475166-37475201 NA NA NA NA NA chr10-40 36376907 36377303 275 - chr10:36376933-36377087 NA NA NA NA NA chr10-39 36158743 36159035 186 - chr10:36158749-36158829 NA NA NA NA NA chr10-38 35885687 35886462 396 - chr10:35886108-35886125 NA NA NA NA NA chr10-37 34479951 34480318 242 - chr10:34480037-34480154 NA NA NA NA NA chr10-36 33673061 33673305 162 - chr10:33673132-33673212 NA NA NA NA NA chr10-35 33093614 33094032 225 - chr10:33093716-33093748 NA NA NA NA NA chr10-34 32328761 32329034 184 - chr10:32328845-32328940 NA NA NA NA NA chr10-33 29900464 29900761 198 - chr10:29900546-29900645 NA NA NA NA NA chr10-32 28967862 28968253 342 - chr10:28967925-28968218 NA NA NA NA NA chr10-31 28707484 28707784 184 - chr10:28707570-28707638 NA NA NA NA NA chr10-30 28559687 28560128 281 - chr10:28559853-28559974 NA NA NA NA NA chr10-29 28367444 28367675 138 - chr10:28367562-28367607 NA NA NA NA NA chr10-28 28070680 28071009 166 - chr10:28070850-28070853 NA NA NA NA NA chr10-27 27910813 27911021 123 - chr10:27910864-27910902 NA NA NA NA NA chr10-26 27640681 27641091 212 - chr10:27640764-27640778 NA NA NA NA NA chr10-25 27439730 27440157 221 - chr10:27440013-27440028 NA NA NA NA NA chr10-24 25823803 25824348 281 - chr10:25824146-25824163 NA NA NA NA NA chr10-23 25750164 25750474 259 - chr10:25750217-25750425 NA NA NA NA NA chr10-22 24381137 24381521 326 - chr10:24381184-24381452 NA NA NA NA NA chr10-21 23552567 23553002 256 - chr10:23552726-23552803 NA NA NA NA NA chr10-20 23284432 23284796 240 - chr10:23284483-23284599 NA NA NA NA NA chr10-19 23274795 23275352 305 - chr10:23275260-23275313 NA NA NA NA NA chr10-18 22470661 22471253 305 - chr10:22471051-22471069 NA NA NA NA NA chr10-17 21459052 21459417 239 - chr10:21459165-21459278 NA NA NA NA NA chr10-16 21014157 21014365 126 - chr10:21014296-21014340 NA NA NA NA NA chr10-15 19735132 19735689 382 - chr10:19735473-19735680 NA NA NA NA NA chr10-14 19421412 19421588 174 - chr10:19421416-19421588 NA NA NA NA NA chr10-13 18638309 18638854 293 - chr10:18638429-18638470 NA NA NA NA NA chr10-12 16454740 16454973 133 - chr10:16454883-16454916 NA NA NA NA NA chr10-11 15349503 15349882 335 - chr10:15349524-15349815 NA NA NA NA NA chr10-10 15046005 15046460 256 - chr10:15046052-15046109 NA NA NA NA NA chr10-155 131684361 131684575 162 - chr10:131684390-131684500 NA NA NA NA NA chr10-9 12883911 12884447 330 - chr10:12884128-12884252 NA NA NA NA NA chr10-8 12763417 12763621 184 - chr10:12763446-12763610 NA NA NA NA NA chr10-154 126572217 126572477 198 - chr10:126572277-126572413 NA NA NA NA NA chr10-7 12620523 12620719 155 - chr10:12620538-12620652 NA NA NA NA NA chr10-153 126099525 126099781 130 - chr10:126099648-126099652 NA NA NA NA NA chr10-152 125153386 125153600 145 - chr10:125153475-125153551 NA NA NA NA NA chr10-6 12307810 12308197 256 - chr10:12307849-12307974 NA NA NA NA NA chr10-151 121566716 121567115 246 - chr10:121566975-121567068 NA NA NA NA NA chr10-150 120892585 120893133 328 - chr10:120892855-120892963 NA NA NA NA NA chr10-149 118933201 118933469 204 - chr10:118933263-118933403 NA NA NA NA NA chr10-148 118070729 118070948 118 - chr10:118070783-118070800 NA NA NA NA NA chr10-5 11768285 11768450 122 - chr10:11768337-11768416 NA NA NA NA NA chr10-147 117314287 117314678 222 - chr10:117314509-117314562 NA NA NA NA NA chr10-146 116656055 116656327 164 - chr10:116656112-116656168 NA NA NA NA NA chr10-4 11504731 11504970 209 - chr10:11504736-11504915 NA NA NA NA NA chr10-145 114778110 114778484 231 - chr10:114778162-114778250 NA NA NA NA NA chr10-144 114187896 114188235 197 - chr10:114188149-114188204 NA NA NA NA NA chr10-143 112539922 112540266 226 - chr10:112540112-112540220 NA NA NA NA NA chr10-142 112020174 112020693 413 - chr10:112020328-112020635 NA NA NA NA NA chr10-141 111219501 111219644 113 - chr10:111219561-111219644 NA NA NA NA NA chr10-140 110286261 110286687 267 - chr10:110286574-110286682 NA NA NA NA NA chr10-139 109445971 109446385 213 - chr10:109446295-109446307 NA NA NA NA NA chr10-138 108989240 108990045 455 - chr10:108989425-108989530 NA NA NA NA NA chr10-137 107863567 107863952 200 - chr10:107863805-107863820 NA NA NA NA NA chr10-136 107719588 107720007 256 - chr10:107719754-107719847 NA NA NA NA NA chr10-135 106762027 106762574 293 - chr10:106762257-106762296 NA NA NA NA NA chr10-134 103710629 103710818 133 - chr10:103710659-103710736 NA NA NA NA NA chr10-133 103521792 103522327 274 - chr10:103522109-103522122 NA NA NA NA NA chr10-132 102149779 102150038 188 - chr10:102149796-102149913 NA NA NA NA NA chr10-131 101096874 101097129 156 - chr10:101096946-101097003 NA NA NA NA NA chr10-130 100539941 100540341 297 - chr10:100540035-100540229 NA NA NA NA NA 1039.5 chr1 165748050 165748226 + 8 NA intron (NM_001256164, intron 5 of 6) AluSx1|SINE|Alu 20730 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 1069.5 chr2 60520361 60520642 + 7.5 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 32997 NM_001365609 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 1551 chr12 96169729 96170187 + 7.5 NA Intergenic Intergenic -24417 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 962.5-3 chr7 72518904 72519137 + 7.5 NA Intergenic L1MD3|LINE|L1 -71877 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 1372.5 chr14 66448885 66449108 + 7.5 NA Intergenic Intergenic -37375 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 1484 chr7 95124049 95124320 + 7.5 NA intron (NM_017650, intron 4 of 15) intron (NM_017650, intron 4 of 15) 200348 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 1067.5 chr19 14412971 14413198 + 7.5 NA non-coding (NR_046366, exon 2 of 10) non-coding (NR_046366, exon 2 of 10) 6257 NM_005804 10212 Hs.311609 NM_005804 ENSG00000123136 DDX39A BAT1|BAT1L|DDX39|DDXL|URH49 DExD-box helicase 39A protein-coding 782.5-2 chr4 49657525 49657703 + 7.5 NA Intergenic (GAATG)n|Satellite|Satellite 670972 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1907.5 chr20 5115427 5115899 + 7.5 NA intron (NM_182649, intron 4 of 5) L1MC5|LINE|L1 -2576 NM_001330987 29058 Hs.472024 NM_014145 ENSG00000089063 TMEM230 C20orf30|HSPC274|dJ1116H23.2.1 transmembrane protein 230 protein-coding 1078.5 chr14 48862189 48862413 + 7.5 NA Intergenic Intergenic 724079 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1229 chr10 85340841 85341142 + 7.5 NA Intergenic L1MD2|LINE|L1 91781 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 926-3 chr3 89300966 89301363 + 7.5 NA intron (NM_182644, intron 3 of 6) MARNA|DNA|TcMar-Mariner 193543 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1672 chr8 134577230 134577515 + 7 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -20699 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1116.5-4 chr5 85758812 85759038 + 7 NA Intergenic Intergenic -523519 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 1544 chr10 48433997 48434452 + 7 NA intron (NM_001323331, intron 12 of 12) intron (NM_001323331, intron 12 of 12) 32612 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 1151 chr9 29866493 29866772 + 7 NA Intergenic Intergenic 541822 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 997-3 chr8 32337762 32337991 + 7 NA intron (NM_013962, intron 1 of 4) MIR3|SINE|MIR -102870 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 1276 chr2 74800871 74801089 + 7 NA Intergenic MLT1D|LTR|ERVL-MaLR -31675 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 1167-4 chr8 48840877 48841065 + 7 NA Intergenic L2c|LINE|L2 80458 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 1064 chr1 69797252 69797554 + 7 NA intron (NM_001370785, intron 4 of 26) L2c|LINE|L2 -121919 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 861.5-3 chr8 47595905 47596075 + 7 NA exon (NM_001282916, exon 8 of 19) exon (NM_001282916, exon 8 of 19) -58098 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 768 chr14 53660098 53660308 + 7 NA Intergenic Charlie18a|DNA|hAT-Charlie 288281 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1190-2 chr7 102811456 102811905 + 7 NA intron (NR_146982, intron 7 of 7) intron (NR_146982, intron 7 of 7) 62681 NM_001145268 222234 Hs.202543 NM_147194 ENSG00000222011 FAM185A - family with sequence similarity 185 member A protein-coding 1175 chr7 84922884 84923201 + 7 NA Intergenic Intergenic 198889 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 672-4 chr14 54522818 54522947 + 7 NA intron (NM_006568, intron 2 of 5) intron (NM_006568, intron 2 of 5) 12976 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 644-4 chr16 80692401 80692547 + 6.5 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 112124 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 1396 chr2 114211585 114211894 + 6.5 NA Intergenic Intergenic -230902 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1026.5-2 chr14 67743561 67743820 + 6.5 NA Intergenic Intergenic 41804 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 1004-2 chr17 57138493 57138773 + 6.5 NA Intergenic L2a|LINE|L2 43144 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 645.5-2 chr1 200850657 200850780 + 6.5 NA intron (NM_001297707, intron 12 of 17) intron (NM_001297707, intron 12 of 17) -22263 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 1709.5 chr8 61171930 61172488 + 6.5 NA Intergenic L2|LINE|L2 -115761 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 1550.5 chr3 181431248 181431575 + 6.5 NA intron (NR_125407, intron 3 of 4) MIRc|SINE|MIR 11075 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 1296 chr2 79834127 79834354 + 6.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 32343 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 1099.5-2 chr2 67105687 67106030 + 6.5 NA intron (NR_110564, intron 1 of 4) LTR85c|LTR|Gypsy? 19412 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 1353-2 chr5 90948688 90949027 + 6.5 NA intron (NR_003149, intron 83 of 89) MER47A|DNA|TcMar-Tigger 365545 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 1332 chr7 74712966 74713186 + 6.5 NA intron (NM_001518, intron 9 of 32) intron (NM_001518, intron 9 of 32) 15842 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 827-3 chr3 3864620 3864833 + 6.5 NA Intergenic Intergenic -63851 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 1582.5 chr15 96647781 96648147 + 6.5 NA Intergenic Intergenic 133690 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 1010.5-3 chr15 63322174 63322394 + 6.5 NA non-coding (NR_135511, exon 10 of 10) non-coding (NR_135511, exon 10 of 10) 44679 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 1778 chr1 97500269 97500738 + 6.5 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -296418 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 975-6 chr6 16892358 16892535 + 6.5 NA Intergenic L1MB8|LINE|L1 -130956 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 1107 chr4 36993360 36993865 + 6.5 NA Intergenic AluJo|SINE|Alu -8167 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 1816.5 chr12 11526851 11527302 + 6.5 NA Intergenic L1MDa|LINE|L1 -20954 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 1039.5-3 chr4 12649694 12649971 + 6.5 NA Intergenic THE1D|LTR|ERVL-MaLR 426381 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 815 chr3 84915488 84915751 + 6.5 NA Intergenic ERVL-E-int|LTR|ERVL 33529 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 864 chr1 48434551 48435002 + 6.5 NA intron (NM_019073, intron 3 of 12) intron (NM_019073, intron 3 of 12) 37428 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 1054-5 chr8 61600382 61600643 + 6.5 NA intron (NM_004318, intron 14 of 24) L1M2|LINE|L1 89299 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 904.5 chr22 42761043 42761375 + 6.5 NA Intergenic Intergenic -39908 NM_001318038 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 749-6 chr5 58871872 58872048 + 6.5 NA Intergenic Intergenic 127938 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1143-2 chr22 26510453 26510856 + 6.5 NA 5' UTR (NM_001346858, exon 4 of 16) 5' UTR (NM_001346858, exon 4 of 16) 1819 NM_012143 24144 Hs.20225 NM_012143 ENSG00000100109 TFIP11 NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6 tuftelin interacting protein 11 protein-coding 1226 chr5 90702047 90702426 + 6.5 NA intron (NR_003149, intron 34 of 89) intron (NR_003149, intron 34 of 89) 143439 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 1038.5 chr5 1270110 1270314 + 6.5 NA intron (NR_149162, intron 6 of 12) intron (NR_149162, intron 6 of 12) 24835 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 957.5-4 chr6 69568789 69568981 + 6.5 NA Intergenic Intergenic 227581 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 719.5-3 chr20 33318536 33318722 + 6.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 35415 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 1413 chr8 85356133 85356642 + 6.5 NA intron (NM_001738, intron 1 of 8) MIRb|SINE|MIR -14673 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 1075-3 chr9 7036809 7037078 + 6.5 NA intron (NR_148680, intron 16 of 21) intron (NR_148680, intron 16 of 21) 279593 NM_001353997 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 928-5 chr4 113860858 113861098 + 6.5 NA Intergenic Intergenic -99051 NM_172115 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 980-2 chr20 46789946 46790103 + 6.5 NA Intergenic MIR3|SINE|MIR 80375 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 1265.5 chr1 113757074 113757370 + 6.5 NA intron (NM_001323051, intron 2 of 12) intron (NM_001323051, intron 2 of 12) 1933 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 1605 chr8 127445730 127446253 + 6.5 NA intron (NR_024393, intron 4 of 4) MLT1A1-int|LTR|ERVL-MaLR 30166 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 810.5-3 chr20 41046962 41047180 + 6.5 NA intron (NM_003286, intron 2 of 20) intron (NM_003286, intron 2 of 20) 18249 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 812-3 chr14 97744333 97744549 + 6 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 18390 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 1398.5-2 chr10 84195520 84195775 + 6 NA intron (NM_033100, intron 2 of 16) intron (NM_033100, intron 2 of 16) 1110 NM_033100 92211 Hs.137556 NM_033100 ENSG00000148600 CDHR1 CORD15|PCDH21|PRCAD|RP65 cadherin related family member 1 protein-coding 796.5-5 chr7 111127714 111127942 + 6 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 36701 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 1220 chr10 96164216 96164569 + 6 NA TTS (NM_001330737) TTS (NM_001330737) 33770 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 914-2 chr8 131403470 131403727 + 6 NA Intergenic MER66D|LTR|ERV1 -362689 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 842-2 chr12 15164440 15164687 + 6 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 12640 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 543-11 chr5 131533964 131534130 + 6 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 101182 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 1020 chr21 28414454 28414703 + 6 NA Intergenic L1MA3|LINE|L1 -124740 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 1308 chr10 87777576 87777995 + 6 NA intron (NM_001321967, intron 5 of 9) intron (NM_001321967, intron 5 of 9) 40446 NR_135914 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 951 chr12 21172303 21172469 + 6 NA intron (NM_006446, intron 2 of 14) intron (NM_006446, intron 2 of 14) 41192 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 885-2 chr2 98293921 98294168 + 6 NA intron (NM_001345864, intron 17 of 21) L1MC4|LINE|L1 -52111 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 822-3 chr17 16571305 16571513 + 6 NA Intergenic LTR16|LTR|ERVL -2197 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 722-2 chr16 58576808 58577010 + 6 NA intron (NM_206999, intron 13 of 30) intron (NM_206999, intron 13 of 30) -16978 NR_002980 677830 Hs.677515 NR_002980 ENSG00000281910 SNORA50A ACA50|SNORA50|SNORA76A small nucleolar RNA, H/ACA box 50A snoRNA 943-3 chr5 111750001 111750263 + 6 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 6119 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 1133.5-2 chr6 38017819 38018051 + 6 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 198208 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 1263 chr12 109942816 109943224 + 6 NA intron (NM_057170, intron 14 of 17) intron (NM_057170, intron 14 of 17) 42443 NM_032300 84260 Hs.410924 NM_032300 ENSG00000139437 TCHP TpMs trichoplein keratin filament binding protein-coding 1300-2 chr3 50960933 50961191 + 6 NA intron (NM_004947, intron 5 of 52) L1MA9|LINE|L1 285982 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 880 chr1 234759166 234759339 + 6 NA non-coding (NR_148962, exon 1 of 1) non-coding (NR_148962, exon 1 of 1) 804 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 973 chr1 218337766 218338074 + 6 NA TTS (NM_016052) TTS (NM_016052) -7364 NR_138149 7042 Hs.133379 NM_003238 ENSG00000092969 TGFB2 G-TSF|LDS4|TGF-beta2 transforming growth factor beta 2 protein-coding 892.5-3 chr16 66411255 66411423 + 6 NA TTS (NR_046242) TTS (NR_046242) 2815 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 545.5-14 chr8 72610562 72610732 + 6 NA intron (NM_004770, intron 2 of 2) MIR|SINE|MIR 73422 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 652 chr1 63581104 63581322 + 6 NA Intergenic L1MD2|LINE|L1 -12198 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 814.5-7 chr5 142114559 142114713 + 6 NA intron (NM_030571, intron 1 of 7) L1MC5|LINE|L1 5857 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 789-3 chr4 27969406 27969627 + 6 NA Intergenic Intergenic 752037 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 832.5 chr13 92966796 92967053 + 6 NA Intergenic Intergenic -78417 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 1007.5-2 chr8 126131503 126131718 + 6 NA Intergenic LTR33A|LTR|ERVL -180413 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 536-14 chr4 35973447 35973600 + 6 NA Intergenic Intergenic 270416 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1280 chr2 82205563 82205950 + 6 NA Intergenic L1MEc|LINE|L1 -651047 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 645-3 chr10 72522039 72522206 + 6 NA intron (NM_006077, intron 5 of 11) intron (NM_006077, intron 5 of 11) 1864 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 718 chr10 70900126 70900335 + 6 NA Intergenic L1M5|LINE|L1 -11665 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 553-13 chr8 76510103 76510276 + 6 NA intron (NR_105006, intron 3 of 5) intron (NR_105006, intron 3 of 5) 103535 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 813-4 chr2 35223917 35224091 + 6 NA Intergenic Intergenic -247401 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 1110 chr1 62165478 62165664 + 6 NA Intergenic Intergenic -29278 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 783-11 chr6 35870891 35871113 + 6 NA intron (NM_003137, intron 8 of 15) intron (NM_003137, intron 8 of 15) 50096 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 1038 chr6 125744190 125744508 + 6 NA Intergenic Intergenic -5283 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 860-4 chr2 36475695 36475860 + 6 NA intron (NM_016441, intron 5 of 16) L1MB7|LINE|L1 119999 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 1180.5 chr20 16331768 16331994 + 6 NA intron (NM_024704, intron 24 of 25) intron (NM_024704, intron 24 of 25) 241567 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 1104-2 chr14 76696355 76696697 + 6 NA Intergenic LTR38B|LTR|ERV1 -64942 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 864-3 chr2 57814798 57815011 + 6 NA Intergenic L1MEg|LINE|L1 -92747 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 1116.5-2 chr2 153314025 153314288 + 6 NA Intergenic L1M4|LINE|L1 164606 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 982 chr12 106484382 106484624 + 6 NA intron (NM_001160708, intron 23 of 27) intron (NM_001160708, intron 23 of 27) -98404 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 1017-2 chr8 101236159 101236374 + 6 NA Intergenic Intergenic -30202 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 993 chr1 32688046 32688312 + 6 NA intron (NM_030786, intron 2 of 4) L2c|LINE|L2 14591 NM_030786 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 942 chr11 90771150 90771375 + 6 NA intron (NR_104190, intron 3 of 6) L1M2b|LINE|L1 97940 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 1255 chr12 7494812 7495096 + 6 NA intron (NR_163255, intron 6 of 16) intron (NR_163255, intron 6 of 16) 8823 NM_001370146 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 798-3 chr3 182441699 182441878 + 6 NA Intergenic L1MD|LINE|L1 44574 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 1115.5-2 chr2 6671981 6672306 + 6 NA Intergenic Intergenic -21624 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 958 chr7 86685543 86685861 + 6 NA intron (NM_001363522, intron 1 of 4) AluSc8|SINE|Alu 41788 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 1239 chr7 112505251 112505569 + 6 NA Intergenic Intergenic 24419 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 771-3 chr12 44458790 44458985 + 6 NA Intergenic Intergenic 416774 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 781-4 chr5 2471670 2471933 + 6 NA Intergenic MER20|DNA|hAT-Charlie -159600 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 696-5 chr19 57922180 57922320 + 6 NA 3' UTR (NM_001317030, exon 4 of 4) 3' UTR (NM_001317030, exon 4 of 4) -5658 NM_152475 147687 Hs.567710 NM_152475 ENSG00000173480 ZNF417 - zinc finger protein 417 protein-coding 990-2 chr5 15244395 15244652 + 6 NA intron (NR_109944, intron 1 of 2) L1MA9|LINE|L1 22037 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 1266 chr10 6694110 6694386 + 6 NA Intergenic Intergenic -43134 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 1005.5-4 chr3 165391047 165391329 + 6 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 184228 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 1329 chr18 44650725 44651061 + 6 NA Intergenic Intergenic -29180 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 1135-2 chr9 31622330 31622603 + 6 NA Intergenic Intergenic -240976 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 1248-2 chr4 30789598 30790016 + 6 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 69438 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 768.5-2 chr4 102657963 102658202 + 6 NA intron (NM_005908, intron 11 of 16) intron (NM_005908, intron 11 of 16) 102886 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 1279.5-2 chr4 36128128 36128412 + 6 NA intron (NR_146894, intron 21 of 32) intron (NR_146894, intron 21 of 32) 115669 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 998 chr14 69059001 69059194 + 6 NA intron (NM_003861, intron 8 of 8) AluJr|SINE|Alu 79415 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 906.5-4 chr6 64242819 64243069 + 6 NA intron (NM_001292009, intron 30 of 43) (AT)n|Simple_repeat|Simple_repeat 436108 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 1057.5 chr9 91239079 91239385 + 6 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 120170 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 873.5 chr10 88238675 88238875 + 6 NA Intergenic Intergenic 344543 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 746-2 chr16 76143697 76143851 + 6 NA Intergenic Intergenic -133627 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 1108-2 chr2 63196774 63197171 + 6 NA intron (NR_148705, intron 13 of 16) Tigger2|DNA|TcMar-Tigger -77430 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 1220.5 chr4 30433460 30433688 + 6 NA Intergenic Intergenic -286795 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1076 chr8 129522152 129522511 + 6 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -38189 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 2023.5 chr4 74847569 74848130 + 6 NA Intergenic Tigger1|DNA|TcMar-Tigger -53326 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 825.5-5 chr8 137554977 137555274 + 6 NA Intergenic Intergenic -141537 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 812-6 chr6 72031049 72031308 + 6 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 144475 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 794-4 chr4 43650802 43651044 + 6 NA Intergenic Intergenic -158380 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 892.5-5 chr22 24998295 24998544 + 6 NA Intergenic AluJb|SINE|Alu -29555 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 1338-2 chr2 37256984 37257479 + 6 NA TTS (NR_146406) TTS (NR_146406) 25573 NR_146404 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 966.5 chr1 72805022 72805340 + 6 NA Intergenic L1MA3|LINE|L1 -500989 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 792 chr4 113891607 113891812 + 6 NA Intergenic Intergenic 87938 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 804-5 chr3 60448757 60448904 + 6 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 169040 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 671.5 chr14 69965297 69965597 + 6 NA intron (NM_001034852, intron 3 of 11) L3|LINE|CR1 -12686 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 1195 chr20 32412621 32413079 + 6 NA intron (NM_015338, intron 3 of 11) AluJo|SINE|Alu 53785 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 860-2 chr11 13676121 13676354 + 6 NA intron (NM_032228, intron 1 of 11) intron (NM_032228, intron 1 of 11) 7569 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 793 chr1 72109690 72109890 + 6 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 172749 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 1279.5 chr2 189689981 189690316 + 6 NA intron (NM_144708, intron 3 of 22) intron (NM_144708, intron 3 of 22) 14163 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 753.5-6 chr9 26936037 26936234 + 6 NA intron (NM_001321546, intron 1 of 12) HAL1|LINE|L1 -10855 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 600-3 chr1 111547111 111547243 + 6 NA intron (NM_001370216, intron 1 of 7) L1MB7|LINE|L1 5168 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 756-2 chr1 110132358 110132573 + 6 NA Intergenic L2|LINE|L2 -18029 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 2127.5 chr4 49154446 49154990 + 6 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 168076 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1000-2 chr8 57317798 57318152 + 6 NA Intergenic Intergenic -25812 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 588-27 chr4 91608719 91608850 + 6 NA Intergenic MamGypsy2-I|LTR|Gypsy 668518 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 963-3 chr5 132882762 132883028 + 6 NA intron (NM_014423, intron 20 of 20) intron (NM_014423, intron 20 of 20) 9227 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 852-9 chr8 48294829 48295036 + 6 NA Intergenic L1MD1|LINE|L1 -256635 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 978-3 chr8 92505729 92506076 + 6 NA Intergenic Intergenic 149592 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 1112 chr11 9066764 9066989 + 6 NA intron (NM_001367977, intron 5 of 22) intron (NM_001367977, intron 5 of 22) 23503 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 1370.5 chr17 67339476 67339752 + 5.5 NA 3' UTR (NM_001316341, exon 13 of 13) 3' UTR (NM_001316341, exon 13 of 13) 26963 NM_002816 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 965.5 chr3 62232238 62232586 + 5.5 NA intron (NM_002841, intron 14 of 29) intron (NM_002841, intron 14 of 29) 86535 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 676.5-6 chr2 126293256 126293433 + 5.5 NA Intergenic L1MC3|LINE|L1 -175359 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 715.5-9 chr4 171222477 171222654 + 5.5 NA Intergenic (ATAAATT)n|Simple_repeat|Simple_repeat 36381 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 695-2 chr11 11840601 11840868 + 5.5 NA promoter-TSS (NM_017944) promoter-TSS (NM_017944) -689 NM_001282659 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 1045-2 chr13 60642198 60642531 + 5.5 NA Intergenic Intergenic -30591 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 919-5 chr5 128421258 128421504 + 5.5 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 116864 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 1349.5 chr4 42269829 42270283 + 5.5 NA Intergenic MIRb|SINE|MIR -117401 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 518.5-2 chr10 59303442 59303607 + 5.5 NA intron (NM_001347852, intron 4 of 12) intron (NM_001347852, intron 4 of 12) 59025 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1526.5 chr15 35288883 35289386 + 5.5 NA Intergenic Intergenic 51808 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 1031.5 chr4 141695782 141696129 + 5.5 NA intron (NM_172175, intron 3 of 9) L1MA6|LINE|L1 59372 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 1290-2 chr18 66803655 66803984 + 5.5 NA Intergenic Intergenic -199729 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 794.5-2 chr17 54343792 54343950 + 5.5 NA Intergenic Intergenic 520944 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 976.5 chr8 132237516 132237940 + 5.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -132463 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 748-13 chr7 18397893 18398098 + 5.5 NA intron (NM_001321896, intron 1 of 12) MIR3|SINE|MIR -97715 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1033-2 chr8 71492672 71492876 + 5.5 NA intron (NM_001370334, intron 2 of 19) L1PA13|LINE|L1 54930 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 1583 chr1 182619646 182620239 + 5.5 NA Intergenic AluSp|SINE|Alu 4802 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LINC01686 - long intergenic non-protein coding RNA 1686 ncRNA 544.5-11 chr6 144637426 144637544 + 5.5 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 231830 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 690 chr1 167756880 167757031 + 5.5 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 34973 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 667.5-3 chr2 132485378 132485587 + 5.5 NA intron (NM_001508, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 51771 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 849-4 chr4 127690272 127690533 + 5.5 NA intron (NM_015693, intron 8 of 15) intron (NM_015693, intron 8 of 15) -39998 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 1507.5 chr17 74513136 74513728 + 5.5 NA Intergenic Intergenic 18043 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 1477.5 chr1 212090198 212090876 + 5.5 NA intron (NM_001286229, intron 11 of 12) intron (NM_001286229, intron 11 of 12) 12924 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 848.5-3 chr2 3654215 3654436 + 5.5 NA Intergenic Intergenic -3875 NM_018436 55821 Hs.97899 NM_018436 ENSG00000151360 ALLC ALC allantoicase protein-coding 867-5 chr8 65520363 65520600 + 5.5 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 42185 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 590.5-9 chr11 93150496 93150700 + 5.5 NA intron (NM_152313, intron 10 of 10) intron (NM_152313, intron 10 of 10) 46828 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 1019-5 chr8 74615234 74615491 + 5.5 NA intron (NR_033830, intron 2 of 5) MIR3|SINE|MIR 15496 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 1165 chr8 55511566 55511878 + 5.5 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 9256 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 1373 chr8 127873996 127874542 + 5.5 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 74454 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 424-25 chr8 140973202 140973349 + 5.5 NA intron (NM_001352719, intron 1 of 32) MER77B|LTR|ERVL 27729 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 948-2 chr11 78536579 78536832 + 5.5 NA intron (NR_120566, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 3529 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 909 chrX 67893113 67893456 + 5.5 NA Intergenic MER4B-int|LTR|ERV1 348661 NM_001348061 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 666.5-2 chr10 30940260 30940410 + 5.5 NA intron (NM_001143771, intron 2 of 7) L2c|LINE|L2 59182 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 971.5-4 chr5 149514100 149514359 + 5.5 NA intron (NM_001271741, intron 4 of 9) intron (NM_001271741, intron 4 of 9) 36136 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 835-3 chr4 74305447 74305758 + 5.5 NA Intergenic Intergenic -2868 NM_001270989 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 772-3 chr12 44985961 44986173 + 5.5 NA Intergenic Intergenic 65032 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 1237.5 chr6 27709464 27709897 + 5.5 NA TTS (NR_038292) TTS (NR_038292) 15601 NR_038292 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 1051.5 chr14 46327230 46327553 + 5.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -143968 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 783.5-8 chrX 93978721 93979012 + 5.5 NA Intergenic Intergenic 304660 NM_001171110 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 824-2 chr2 150689350 150689615 + 5.5 NA Intergenic Intergenic 60585 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 918-3 chr14 60277941 60278530 + 5.5 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 29014 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 1422.5 chr10 81037467 81037837 + 5.5 NA Intergenic L1MDa|LINE|L1 387855 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1671 chr1 89105967 89106433 + 5.5 NA TTS (NM_004120) TTS (NM_004120) 19914 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 702-7 chr8 69494104 69494310 + 5.5 NA intron (NR_156414, intron 1 of 20) intron (NR_156414, intron 1 of 20) 1360 NR_156415 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 749.5-5 chr15 67361195 67361425 + 5.5 NA intron (NM_001031715, intron 8 of 20) MIR|SINE|MIR -106112 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 574.5-10 chr2 103352237 103352342 + 5.5 NA Intergenic Intergenic -367860 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 502.5-8 chr20 933267 933450 + 5.5 NA Intergenic Intergenic -17024 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 838-7 chr4 183282854 183283137 + 5.5 NA intron (NM_024949, intron 18 of 22) intron (NM_024949, intron 18 of 22) 37779 NM_001111319 53842 Hs.333179 NM_001111319 ENSG00000177300 CLDN22 CLDN21 claudin 22 protein-coding 966.5-2 chr18 13318414 13318848 + 5.5 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 40526 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 1257 chr11 39376066 39376347 + 5.5 NA Intergenic Intergenic 727348 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1291.5 chr1 170288949 170289453 + 5.5 NA Intergenic Intergenic -4993 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 582.5-3 chr11 20128823 20128934 + 5.5 NA Intergenic Intergenic 31597 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 875-2 chr3 157058139 157058395 + 5.5 NA Intergenic MER2|DNA|TcMar-Tigger -23574 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 1333.5 chr13 94420015 94420384 + 5.5 NA Intergenic A-rich|Low_complexity|Low_complexity 59483 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 1230 chr6 79885140 79885645 + 5.5 NA Intergenic L1MA2|LINE|L1 62161 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 1042 chr11 9728442 9728648 + 5.5 NA intron (NM_015055, intron 5 of 11) intron (NM_015055, intron 5 of 11) -29748 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 1087 chr14 57707414 57707627 + 5.5 NA intron (NR_159373, intron 1 of 10) THE1D|LTR|ERVL-MaLR 157479 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 947.5 chr11 117451150 117451367 + 5.5 NA intron (NM_020693, intron 19 of 32) intron (NM_020693, intron 19 of 32) 123404 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 780.5-2 chr11 110486034 110486297 + 5.5 NA Intergenic Intergenic 56217 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 583.5-7 chr2 62512674 62512971 + 5.5 NA Intergenic Intergenic -6627 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 687.5-6 chr6 22075203 22075425 + 5.5 NA intron (NR_015410, intron 8 of 11) L2c|LINE|L2 71879 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 765.5-4 chr8 122180747 122181002 + 5.5 NA Intergenic Intergenic 387770 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 748-8 chr4 43111866 43112302 + 5.5 NA Intergenic Intergenic 218818 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 888.5 chr8 106229591 106229889 + 5.5 NA Intergenic L1MC1|LINE|L1 -40438 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 1115.5 chr11 5856257 5856569 + 5.5 NA TTS (NM_001005168) TTS (NM_001005168) 1289 NM_001005168 390079 Hs.553738 NM_001005168 ENSG00000183269 OR52E8 OR11-54 olfactory receptor family 52 subfamily E member 8 protein-coding 1160 chr2 124470513 124470953 + 5.5 NA intron (NM_130773, intron 6 of 23) L1PA11|LINE|L1 445446 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 580.5-11 chr9 91752496 91752715 + 5.5 NA intron (NM_001318204, intron 4 of 7) L1ME2z|LINE|L1 -116260 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 1116.5-3 chr2 172639871 172640276 + 5.5 NA Intergenic Intergenic 83983 NR_103729 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 881 chr1 108895826 108896072 + 5.5 NA intron (NM_013296, intron 2 of 14) MER113A|DNA|hAT-Charlie 18964 NM_001321039 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 1051 chr18 6423396 6423623 + 5.5 NA Intergenic Intergenic -8250 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 801 chr1 247951106 247951292 + 5.5 NA intron (NM_001304535, intron 1 of 1) L1M2|LINE|L1 2341 NM_001001963 391190 Hs.690212 NM_001001963 ENSG00000279263 OR2L8 - olfactory receptor family 2 subfamily L member 8 (gene/pseudogene) protein-coding 1024.5 chr12 25472129 25472397 + 5.5 NA Intergenic Intergenic 81020 NM_001145729 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 941.5-2 chr6 41998458 41998639 + 5.5 NA intron (NM_001136017, intron 1 of 4) AluSq10|SINE|Alu 50346 NM_001136017 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 446.5-11 chr2 142569975 142570104 + 5.5 NA Intergenic Intergenic -307625 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 643-2 chr1 100438345 100438508 + 5.5 NA intron (NM_001319212, intron 5 of 13) intron (NM_001319212, intron 5 of 13) 85920 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 750-6 chr15 38817494 38817682 + 5.5 NA Intergenic Plat_L3|LINE|CR1 120990 NR_160786 1013-3 chr4 100278892 100279169 + 5.5 NA Intergenic Intergenic -88562 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 769.5-5 chr15 77341936 77342222 + 5.5 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 78025 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 882.5-2 chr3 98365540 98365742 + 5.5 NA Intergenic L1M1|LINE|L1 11787 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 783.5-3 chr14 20784869 20785140 + 5.5 NA Intergenic MER5B|DNA|hAT-Charlie 3736 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 607.5-6 chr16 50605700 50605826 + 5.5 NA intron (NM_033119, intron 3 of 9) MER2|DNA|TcMar-Tigger 57367 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 857-4 chr17 65061500 65061823 + 5.5 NA Intergenic Intergenic -4921 NM_006572 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 645.5-8 chr3 60673177 60673337 + 5.5 NA intron (NM_001320900, intron 5 of 9) L1MEf|LINE|L1 -55387 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 1354 chr8 134069325 134069640 + 5.5 NA Intergenic Intergenic 182986 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 552-22 chr8 112856447 112856646 + 5.5 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 213053 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 871.5-2 chr5 84288183 84288385 + 5.5 NA intron (NM_001278642, intron 1 of 9) L2a|LINE|L2 96583 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 986.5 chr10 78828108 78828405 + 5.5 NA Intergenic LTR16|LTR|ERVL 239192 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 592.5-5 chr18 13827131 13827256 + 5.5 NA 3' UTR (NM_005913, exon 2 of 2) 3' UTR (NM_005913, exon 2 of 2) 3044 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 872.5 chr15 23611670 23611853 + 5.5 NA Intergenic L1MA7|LINE|L1 36106 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 992-2 chr8 73613057 73613275 + 5.5 NA intron (NM_001164384, intron 7 of 10) MIR|SINE|MIR 133674 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 1048 chr11 40602367 40602744 + 5.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -309425 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1013.5-2 chr8 103674362 103674672 + 5.5 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -144703 NM_001348504 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1005.5-2 chr11 102087423 102087735 + 5.5 NA Intergenic Intergenic -22868 NM_001130145 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 1089.5-2 chr2 153805759 153806006 + 5.5 NA Intergenic HAL1M8|LINE|L1 -66040 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 753.5 chr1 213822741 213822997 + 5.5 NA intron (NR_037850, intron 5 of 5) L2a|LINE|L2 -101880 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 807.5-4 chr5 43609722 43609892 + 5.5 NA intron (NM_001331026, intron 2 of 20) L2|LINE|L2 -6577 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 1801.5 chr8 120826073 120826821 + 5.5 NA Intergenic THE1B|LTR|ERVL-MaLR -14401 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1052-2 chr14 68667376 68667878 + 5.5 NA intron (NM_001321818, intron 10 of 10) UCON44|Unknown|Unknown -38840 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 858.5-2 chr2 112944610 112944879 + 5.5 NA Intergenic L1MA9|LINE|L1 29551 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 1559.5 chr14 62348469 62348844 + 5.5 NA Intergenic Intergenic -208683 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1433 chrUn_KI270467v1 3036 3565 + 5.5 NA NA SAR|Satellite|Satellite NA NA 1004-3 chr2 130759874 130760088 + 5.5 NA intron (NM_001105195, intron 1 of 1) intron (NM_001105195, intron 1 of 1) 3637 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 639.5-4 chr20 31053893 31054022 + 5.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203707 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 604-19 chr9 95604885 95605032 + 5.5 NA Intergenic Intergenic -87901 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 725-9 chr9 132906869 132907079 + 5.5 NA intron (NM_000368, intron 13 of 22) intron (NM_000368, intron 13 of 22) 28076 NM_001316900 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 999.5-2 chr16 59436399 59436640 + 5.5 NA Intergenic L1MEf|LINE|L1 318672 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 827-2 chr2 37375591 37375859 + 5.5 NA Intergenic Intergenic 31095 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 611-3 chr13 85241120 85241399 + 5.5 NA Intergenic Intergenic -93202 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 1034.5 chr2 176719222 176719559 + 5.5 NA Intergenic Intergenic 81636 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 865-5 chr7 10947148 10947355 + 5.5 NA Intergenic Intergenic -7098 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 693.5-6 chr6 165782415 165782704 + 5.5 NA Intergenic Intergenic -120279 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 842 chr12 4401355 4401556 + 5.5 NA Intergenic L1MEh|LINE|L1 -21743 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 814.5 chr10 47090803 47091024 + 5.5 NA Intergenic Intergenic 179191 NM_001352551 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 653.5-9 chr3 142708557 142708794 + 5.5 NA intron (NM_001145319, intron 14 of 15) intron (NM_001145319, intron 14 of 15) -15359 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 1361 chr6 170015935 170016356 + 5.5 NA Intergenic Intergenic 53522 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 1503.5 chr4 49709097 49710150 + 5.5 NA Intergenic SAR|Satellite|Satellite 722981 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 763.5-3 chr2 196441032 196441310 + 5.5 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -78994 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 696-8 chr3 84446638 84446914 + 5.5 NA Intergenic Intergenic 422799 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 1010.5-4 chr5 41670103 41670444 + 5.5 NA Intergenic Intergenic -159672 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 722.5-2 chr1 200317031 200317197 + 5.5 NA Intergenic Intergenic 56678 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 1026 chr3 97033476 97033715 + 5.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 219001 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 800.5 chr12 121570264 121570425 + 5.5 NA intron (NM_001005366, intron 4 of 22) AluSq2|SINE|Alu 9902 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 1018-2 chr3 130778277 130778510 + 5.5 NA Intergenic AluJb|SINE|Alu -31564 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 1003.5-3 chr8 29989505 29989768 + 5.5 NA Intergenic Intergenic -32288 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 658 chr1 194316991 194317140 + 5.5 NA Intergenic Intergenic 1012320 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 779.5-2 chr20 25351555 25351737 + 5.5 NA intron (NM_001042472, intron 1 of 12) AluSp|SINE|Alu 39189 NM_015600 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12 abhydrolase domain containing 12 protein-coding 688.5-6 chr3 8773107 8773258 + 5.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -3568 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 904-4 chr17 61641450 61641738 + 5.5 NA Intergenic Intergenic -50375 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1222 chr10 110299611 110300044 + 5.5 NA intron (NM_005871, intron 2 of 5) intron (NM_005871, intron 2 of 5) 5093 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 934 chr16 85483061 85483313 + 5.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -128222 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 1057 chr6 15639485 15639842 + 5.5 NA intron (NM_001271669, intron 1 of 7) intron (NM_001271669, intron 1 of 7) 23365 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 657.5-5 chr2 58452974 58453150 + 5.5 NA Intergenic Intergenic -67691 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 648-9 chr2 110173815 110174007 + 5.5 NA intron (NM_001128179, intron 2 of 17) L1MEf|LINE|L1 31102 NM_207181 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 1376 chr3 127475723 127476070 + 5.5 NA Intergenic L1ME3A|LINE|L1 61884 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 1033 chr8 70506933 70507557 + 5.5 NA Intergenic AluSz|SINE|Alu 36111 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 869.5-2 chr10 121317766 121318139 + 5.5 NA Intergenic L1ME5|LINE|L1 213362 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 660.5-8 chr4 68243858 68244001 + 5.5 NA intron (NM_182502, intron 1 of 9) intron (NM_182502, intron 1 of 9) 1765 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 1235.5 chr6 167872301 167872546 + 5.5 NA intron (NM_001207008, intron 4 of 31) intron (NM_001207008, intron 4 of 31) 44788 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 1806.5 chr14 52783634 52784453 + 5.5 NA intron (NM_198066, intron 2 of 5) intron (NM_198066, intron 2 of 5) 7564 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 1082.5-2 chr18 73799984 73800238 + 5.5 NA Intergenic Intergenic 347723 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 727.5-5 chr22 36407050 36407217 + 5.5 NA Intergenic AluSz|SINE|Alu -19066 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 547-10 chr2 155055999 155056142 + 5.5 NA Intergenic Intergenic 357375 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 749.5-4 chr12 103469663 103469868 + 5.5 NA intron (NR_103526, intron 2 of 10) L1ME4a|LINE|L1 26203 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 1133 chr17 61659950 61660320 + 5.5 NA Intergenic Intergenic -68916 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1176 chr7 88130299 88130700 + 5.5 NA intron (NM_001324421, intron 10 of 28) intron (NM_001324421, intron 10 of 28) -86161 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 1081 chr11 110731614 110731958 + 5.5 NA Intergenic L1M6|LINE|L1 -18597 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 755.5-6 chr8 131787480 131787752 + 5.5 NA Intergenic Intergenic -116477 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 772.5-3 chr2 71603056 71603245 + 5.5 NA intron (NM_001130985, intron 36 of 54) L2b|LINE|L2 136451 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 810.5-6 chr8 100139584 100139921 + 5.5 NA intron (NR_036491, intron 2 of 4) intron (NR_036491, intron 2 of 4) 6065 NR_036491 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 1465.5 chr5 49599426 49600020 + 5.5 NA Intergenic BSR/Beta|Satellite|Satellite 841565 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1056-2 chr12 90775987 90776260 + 5.5 NA Intergenic L1MC5a|LINE|L1 -141900 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 715.5-2 chr17 66148539 66148731 + 5.5 NA intron (NM_001353129, intron 4 of 26) L1MB2|LINE|L1 43257 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 605.5-5 chr5 53696854 53697370 + 5.5 NA Intergenic AluSz|SINE|Alu 122570 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 936 chr4 67547152 67547389 + 5.5 NA Intergenic Intergenic -1767 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 928 chr1 42524781 42525256 + 5.5 NA intron (NM_001355227, intron 6 of 18) L1MEf|LINE|L1 -8002 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 976-3 chr4 174077376 174077591 + 5.5 NA Intergenic L1MEg|LINE|L1 142915 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 1088 chr1 19738660 19738894 + 5.5 NA intron (NM_001349112, intron 11 of 14) MLT1J|LTR|ERVL-MaLR 60572 NM_001349115 255104 Hs.466729 NM_181719 ENSG00000162542 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 786.5-3 chr3 121308805 121308989 + 5.5 NA intron (NM_001348343, intron 20 of 27) L1M4b|LINE|L1 237091 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 738.5-4 chr22 45707705 45707873 + 5.5 NA intron (NM_013236, intron 5 of 11) intron (NM_013236, intron 5 of 11) 35955 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 465.5-13 chr2 191506466 191506581 + 5.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -171549 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 670 chr1 218585843 218586085 + 5.5 NA intron (NR_031644, intron 2 of 6) MamRTE1|LINE|RTE-BovB 75869 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 843-4 chr3 54522387 54522624 + 5.5 NA intron (NM_018398, intron 5 of 37) L1MB8|LINE|L1 117352 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 1063 chr4 40224320 40224701 + 5.5 NA intron (NM_001278360, intron 2 of 3) Zaphod3|DNA|hAT-Tip100 27479 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 986-5 chr5 34025159 34025472 + 5.5 NA intron (NR_037951, intron 4 of 8) intron (NR_037951, intron 4 of 8) -17265 NM_001167595 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 679.5-13 chrX 130781307 130781471 + 5.5 NA intron (NM_182314, intron 3 of 15) MamRep434|DNA|TcMar-Tigger -21247 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 847.5-5 chr8 77684399 77684672 + 5.5 NA Intergenic Intergenic 233838 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 1404 chr8 89129461 89130146 + 5.5 NA Intergenic L1MA5A|LINE|L1 627908 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 813-2 chr15 58594172 58594459 + 5.5 NA 3' UTR (NM_001110, exon 16 of 16) 3' UTR (NM_001110, exon 16 of 16) -95580 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 964.5 chr1 175544761 175544995 + 5.5 NA intron (NM_003285, intron 1 of 22) MLT1I|LTR|ERVL-MaLR 198717 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 957.5-3 chr5 114188907 114189115 + 5.5 NA Intergenic L1M5|LINE|L1 -173059 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 787-5 chr3 113137621 113137795 + 5.5 NA Intergenic L1ME4b|LINE|L1 30023 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 908.5-3 chr3 189120807 189121101 + 5.5 NA Intergenic Intergenic -51017 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 679-13 chr5 137855878 137856068 + 5.5 NA Intergenic Intergenic -11883 NM_006790 9499 Hs.84665 NM_006790 ENSG00000120729 MYOT LGMD1|LGMD1A|MFM3|TTID|TTOD myotilin protein-coding 913-3 chr2 13470907 13471182 + 5.5 NA Intergenic Intergenic -464031 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 656.5-5 chr4 41139005 41139127 + 5.5 NA intron (NM_173075, intron 2 of 16) L1M4|LINE|L1 75476 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1001.5 chr14 60242659 60243041 + 5.5 NA Intergenic Intergenic -2900 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 1538.5 chr7 11136530 11137014 + 5.5 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 162900 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 932.5-3 chr8 111713774 111714089 + 5.5 NA Intergenic L1M3|LINE|L1 337292 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 882.5 chr12 20028692 20028911 + 5.5 NA intron (NR_040098, intron 2 of 2) L1MA8|LINE|L1 14116 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 915 chr1 204898224 204898553 + 5.5 NA intron (NM_001160332, intron 1 of 27) L4_C_Mam|LINE|RTE-X -45838 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 863.5-2 chr3 123727266 123727526 + 5.5 NA intron (NM_053026, intron 10 of 32) MIRb|SINE|MIR 37752 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 963.5-2 chr8 115328852 115329229 + 5.5 NA Intergenic Intergenic 338973 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1013-5 chr7 7387485 7387807 + 5.5 NA intron (NM_001037763, intron 27 of 34) L1MC4|LINE|L1 132492 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 792.5 chr2 46251437 46251665 + 5 NA Intergenic Intergenic -45856 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 782 chr6 47028441 47028662 + 5 NA intron (NM_153840, intron 2 of 14) L2|LINE|L2 13781 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 527.5 chr1 178893735 178893871 + 5 NA intron (NM_152663, intron 15 of 19) intron (NM_152663, intron 15 of 19) -22726 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 787.5-6 chr3 69667210 69667447 + 5 NA Intergenic Intergenic -72136 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 424 chr1 97945963 97946054 + 5 NA Intergenic Intergenic -4268 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 449-12 chr15 56253080 56253177 + 5 NA Intergenic Intergenic -8046 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 913 chr1 64654032 64654335 + 5 NA intron (NM_020925, intron 11 of 26) intron (NM_020925, intron 11 of 26) 74336 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 905-3 chr6 79059410 79059703 + 5 NA intron (NM_017934, intron 6 of 39) L1MEg|LINE|L1 18698 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 754 chr10 83643366 83643574 + 5 NA Intergenic L1ME2|LINE|L1 33619 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 834.5-5 chr2 84849337 84849632 + 5 NA intron (NM_001307978, intron 2 of 4) intron (NM_001307978, intron 2 of 4) 31600 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 836.5-3 chr5 18307062 18307319 + 5 NA Intergenic L1ME3E|LINE|L1 499916 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 637 chr10 66038561 66038796 + 5 NA intron (NM_001127384, intron 15 of 17) MIRc|SINE|MIR 467253 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 636-24 chr9 95551462 95551608 + 5 NA Intergenic MIR3|SINE|MIR -34478 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 609-8 chr2 172671493 172671717 + 5 NA Intergenic Intergenic -64240 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 783.5-5 chr2 15580201 15580493 + 5 NA Intergenic AluJo|SINE|Alu -11521 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 564-8 chr13 66321261 66321578 + 5 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 103169 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 898 chr1 91150173 91150529 + 5 NA Intergenic L1M3|LINE|L1 -128096 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 695-4 chr12 15535842 15536084 + 5 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -10648 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 819-3 chr16 24997784 24998093 + 5 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 17431 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 714-5 chr3 120248382 120248660 + 5 NA Intergenic AluSx1|SINE|Alu -4226 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 590-3 chr12 47376435 47376666 + 5 NA Intergenic L1PA16|LINE|L1 -12281 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 766-5 chr14 87541063 87541306 + 5 NA Intergenic Intergenic 114110 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 1159-2 chr7 110812865 110813251 + 5 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -277948 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 752.5-5 chr9 76997715 76997952 + 5 NA Intergenic AluJb|SINE|Alu -21822 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 665-10 chr5 87703512 87703670 + 5 NA Intergenic L1ME4c|LINE|L1 41549 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 1235 chr18 10119234 10119550 + 5 NA Intergenic L1MA7|LINE|L1 205376 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 961.5 chr1 101977139 101977492 + 5 NA intron (NR_110210, intron 1 of 7) intron (NR_110210, intron 1 of 7) 19919 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 552-5 chr12 432948 433124 + 5 NA intron (NM_001130148, intron 6 of 10) AluJo|SINE|Alu -26903 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 627-10 chr20 48778741 48778959 + 5 NA intron (NM_020820, intron 1 of 39) L1ME1|LINE|L1 49149 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 887 chr12 85337057 85337324 + 5 NA Intergenic MIR|SINE|MIR 56970 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 866-4 chr22 25617144 25617333 + 5 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 52563 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 674.5-4 chr2 47182281 47182474 + 5 NA Intergenic Intergenic -5441 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 511-27 chr8 142240233 142240345 + 5 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 41933 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 689-7 chr2 79104243 79104447 + 5 NA Intergenic L1PA15|LINE|L1 -16143 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 831.5-3 chr2 79980725 79980965 + 5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -114262 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 845-4 chr9 98547813 98548110 + 5 NA intron (NM_005458, intron 2 of 18) L1ME4b|LINE|L1 160974 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 762-7 chr9 69921968 69922306 + 5 NA Intergenic MER4E|LTR|ERV1 101320 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 687-9 chr22 29920340 29920541 + 5 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 37266 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 941.5 chr2 55638911 55639128 + 5 NA intron (NM_033109, intron 26 of 27) AluSz|SINE|Alu -21397 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 487.5 chr1 23123805 23123961 + 5 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 44973 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 1341 chr14 61575988 61576287 + 5 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -5484 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 920-2 chr13 112825564 112825868 + 5 NA intron (NM_032189, intron 11 of 28) intron (NM_032189, intron 11 of 28) -70985 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 1065 chr12 46356097 46356559 + 5 NA Intergenic Intergenic 16445 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 946-3 chr7 7232986 7233316 + 5 NA intron (NM_020156, intron 1 of 3) intron (NM_020156, intron 1 of 3) -22003 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 657.5-7 chr22 26777144 26777327 + 5 NA intron (NR_110543, intron 4 of 5) intron (NR_110543, intron 4 of 5) -82976 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 896.5-2 chr2 78826615 78826932 + 5 NA Intergenic Intergenic -198929 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 697 chr1 189808616 189808884 + 5 NA Intergenic L1MB4|LINE|L1 667260 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 932 chr7 1259169 1259497 + 5 NA Intergenic AluJo|SINE|Alu 26461 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 640-6 chr4 58961611 58961819 + 5 NA Intergenic L1MC|LINE|L1 -22567 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 583-14 chr6 168791719 168791913 + 5 NA Intergenic Intergenic 172566 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 472.5 chr1 187268547 187268647 + 5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -175031 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 707.5-6 chr7 2777162 2777480 + 5 NA intron (NM_007353, intron 2 of 3) MER21-int|LTR|ERVL -14181 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 589-5 chr16 17401813 17401955 + 5 NA intron (NM_022166, intron 1 of 11) L1ME4c|LINE|L1 69076 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 888-2 chr2 108540434 108540672 + 5 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 6198 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 1060.5 chr15 63954068 63954358 + 5 NA intron (NM_014326, intron 4 of 11) L1MA3|LINE|L1 25939 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 707.5-4 chr4 111683616 111683803 + 5 NA Intergenic AluSx1|SINE|Alu -461745 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 880.5 chr4 61621418 61621693 + 5 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 419383 NM_001371342 1337 chr8 107106565 107106990 + 5 NA Intergenic MamGypsy2-I|LTR|Gypsy 229738 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 937.5 chr12 20845732 20845928 + 5 NA intron (NM_001349920, intron 1 of 13) L1PB|LINE|L1 23282 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 792-5 chr8 16710413 16710781 + 5 NA Intergenic Intergenic 291748 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 1322 chr3 115396709 115397081 + 5 NA Intergenic Intergenic -226615 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 648.5-7 chrUn_KI270333v1 1923 2150 + 5 NA NA SAR|Satellite|Satellite NA NA 669.5-4 chr16 48084213 48084511 + 5 NA intron (NM_033226, intron 27 of 28) intron (NM_033226, intron 27 of 28) 62408 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 852-8 chr7 38164868 38165126 + 5 NA Intergenic L1MB2|LINE|L1 -13248 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 715-2 chr12 28919443 28919720 + 5 NA Intergenic L1PA16|LINE|L1 -229697 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 537.5-20 chrX 98989239 98989384 + 5 NA Intergenic Intergenic 1420962 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 1451.5 chr11 61382777 61383200 + 5 NA Intergenic L1MEb|LINE|L1 -9372 NM_001330285 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 1160-3 chr8 132189443 132189730 + 5 NA intron (NM_004519, intron 1 of 14) AluSp|SINE|Alu -84321 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 1349.5-2 chr6 130439369 130439764 + 5 NA intron (NM_052913, intron 1 of 1) L2|LINE|L2 2449 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 735.5-3 chr5 82862258 82862657 + 5 NA Intergenic Intergenic -2621 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 1026-4 chr8 130103292 130103721 + 5 NA intron (NM_018482, intron 24 of 29) AluSq2|SINE|Alu -18738 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 676.5 chr1 68434124 68434343 + 5 NA intron (NM_000329, intron 10 of 13) L2a|LINE|L2 15721 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 904-2 chr15 37493394 37493692 + 5 NA Intergenic Intergenic -392232 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 757 chr1 32034587 32034787 + 5 NA intron (NR_073498, intron 4 of 8) intron (NR_073498, intron 4 of 8) 20819 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 637-8 chr4 86220548 86220804 + 5 NA TTS (NR_110879) TTS (NR_110879) 100870 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 1897 chr4 95494330 95495011 + 5 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 54303 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 480-25 chr3 197226503 197226638 + 5 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) -42439 NM_001204388 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 816-7 chr9 107646763 107647021 + 5 NA Intergenic Intergenic -157123 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 732.5-3 chr11 114449470 114449630 + 5 NA intron (NM_015523, intron 6 of 6) MER103C|DNA|hAT-Charlie 10083 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 882.5-4 chr6 118004026 118004311 + 5 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -81735 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 620-6 chr14 61125770 61125980 + 5 NA Intergenic Intergenic -144185 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 529-22 chr8 123153960 123154141 + 5 NA intron (NM_001363151, intron 19 of 19) intron (NM_001363151, intron 19 of 19) -24997 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 839-9 chr8 139333960 139334261 + 5 NA Intergenic L1ME3A|LINE|L1 369013 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 833.5-2 chr5 147758406 147758676 + 5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 24187 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 1011 chr8 47371498 47371907 + 5 NA intron (NR_104581, intron 5 of 16) MIRb|SINE|MIR 110764 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 859.5-6 chr6 152026746 152026946 + 5 NA intron (NM_001122741, intron 6 of 8) L1M8|LINE|L1 141441 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 735-5 chr2 120127818 120128120 + 5 NA intron (NM_001330310, intron 17 of 24) intron (NM_001330310, intron 17 of 24) 95431 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 595-16 chr8 141191711 141191870 + 5 NA intron (NM_001362798, intron 20 of 21) intron (NM_001362798, intron 20 of 21) 36784 NM_001080431 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 549-13 chr5 125583762 125583954 + 5 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 90597 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 706-3 chr12 34457707 34457926 + 5 NA Intergenic ALR/Alpha|Satellite|centr 435320 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 876-2 chr21 14580191 14580516 + 5 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) -1849 NR_046512 100874190 Hs.563053 NR_046512 ENSG00000223662 SAMSN1-AS1 - SAMSN1 antisense RNA 1 ncRNA 967.5-2 chr5 27130485 27130882 + 5 NA Intergenic Intergenic -92097 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 532.5-11 chr3 25353707 25354024 + 5 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) 13063 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 675.5-7 chr2 102590745 102591009 + 5 NA Intergenic Intergenic -28676 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 711.5 chr11 22446236 22446513 + 5 NA intron (NR_120583, intron 3 of 3) MIR|SINE|MIR 45645 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 1013.5 chr11 102656147 102656537 + 5 NA Intergenic Intergenic -31010 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 1104-3 chr6 50509514 50509823 + 5 NA Intergenic HAL1ME|LINE|L1 -203876 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 1124.5 chr4 59736316 59736624 + 5 NA Intergenic Intergenic 722897 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 574.5-14 chr8 72834096 72834255 + 5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 102130 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 1190 chr1 44477578 44477908 + 5 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 53742 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 799-4 chr6 55293378 55293549 + 5 NA Intergenic L4_A_Mam|LINE|RTE-X -34006 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 568-12 chr4 32988862 32989031 + 5 NA Intergenic Intergenic 637908 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 501-21 chr7 12782916 12783108 + 5 NA Intergenic L1ME2|LINE|L1 95379 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 686-6 chr4 65954343 65954515 + 5 NA Intergenic Intergenic -283934 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 1400.5 chr1 182108202 182108773 + 5 NA Intergenic Intergenic -46775 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 659-11 chr4 172255379 172255605 + 5 NA intron (NM_001034845, intron 3 of 12) intron (NM_001034845, intron 3 of 12) 433425 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 879.5-2 chrX 51435695 51436043 + 5 NA Intergenic MIRb|SINE|MIR 28921 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 860-3 chr14 81165123 81165450 + 5 NA Intergenic Intergenic 37548 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 654-4 chr11 63520796 63520961 + 5 NA Intergenic Intergenic 12891 NM_001142538 85329 Hs.502774 NM_033101 ENSG00000133317 LGALS12 GAL12|GRIP1 galectin 12 protein-coding 1187 chr2 129140664 129141079 + 5 NA Intergenic L1M4c|LINE|L1 133020 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 572.5 chr1 53827482 53827605 + 5 NA intron (NR_033142, intron 3 of 16) intron (NR_033142, intron 3 of 16) 10753 NR_033142 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 843-2 chr11 112939984 112940436 + 5 NA Intergenic Intergenic -21210 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 1162 chr12 26374032 26374588 + 5 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 178737 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 1261.5 chr10 69326634 69327095 + 5 NA intron (NM_001322367, intron 1 of 16) L1ME3Cz|LINE|L1 8017 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 852-10 chr8 125123846 125124072 + 5 NA intron (NM_001349486, intron 3 of 7) L1MB8|LINE|L1 32099 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 525-17 chr3 28788885 28789022 + 5 NA Intergenic MER5A|DNA|hAT-Charlie 213675 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 800-7 chr17 60353187 60353467 + 5 NA intron (NM_032582, intron 1 of 33) MLT1A|LTR|ERVL-MaLR 38806 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 790-4 chr14 58082740 58082955 + 5 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 69366 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 615-2 chr10 128790949 128791095 + 5 NA Intergenic L1ME3B|LINE|L1 -121811 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 715-4 chr16 64295890 64296096 + 5 NA Intergenic Intergenic 826070 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 930 chr1 73257305 73257604 + 5 NA Intergenic Intergenic -48716 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 439-20 chr7 140197411 140197520 + 5 NA Intergenic Intergenic 20204 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 KDM7A-DT JHDM1D-AS1 KDM7A divergent transcript ncRNA 649-9 chr4 93687548 93687734 + 5 NA intron (NM_001286838, intron 13 of 14) L2a|LINE|L2 -141112 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 767-7 chr5 25527002 25527221 + 5 NA Intergenic L2|LINE|L2 336158 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 740-12 chr8 121979431 121979693 + 5 NA Intergenic Intergenic -338122 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 686.5-2 chr11 95465150 95465445 + 5 NA Intergenic L1M5|LINE|L1 -232822 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 395-32 chr7 21483841 21483947 + 5 NA intron (NM_003112, intron 5 of 5) intron (NM_003112, intron 5 of 5) 12836 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 858-3 chr18 2601406 2601649 + 5 NA intron (NM_006101, intron 13 of 16) (AATTAA)n|Simple_repeat|Simple_repeat 29970 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 970-2 chr3 185919219 185919544 + 5 NA intron (NM_004593, intron 7 of 8) intron (NM_004593, intron 7 of 8) 18633 NM_004593 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 764-5 chr21 28989034 28989350 + 5 NA intron (NM_015565, intron 1 of 29) Charlie8|DNA|hAT-Charlie 3685 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 672.5-5 chr3 145563250 145563486 + 5 NA Intergenic L1MA9|LINE|L1 505817 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 1075.5-2 chr8 137666112 137666372 + 5 NA Intergenic Intergenic -252654 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 712 chr14 39829816 39830061 + 5 NA Intergenic Intergenic -397438 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 733.5-4 chr3 36068213 36068435 + 5 NA Intergenic Intergenic -312163 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 1052 chr12 32257865 32258476 + 5 NA intron (NR_148725, intron 2 of 9) L1ME3A|LINE|L1 -141388 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 1234 chr6 45003975 45004432 + 5 NA intron (NM_001261823, intron 4 of 9) L1MC4|LINE|L1 193567 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 809.5-2 chr14 45450640 45450886 + 5 NA Intergenic L1MA4A|LINE|L1 -197561 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 684.5-4 chr2 42648163 42648407 + 5 NA intron (NM_001330443, intron 6 of 16) intron (NM_001330443, intron 6 of 16) 79653 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 470-26 chr3 120597875 120598026 + 5 NA intron (NM_004547, intron 1 of 2) MIRb|SINE|MIR 1614 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 1428 chr18 60255385 60255822 + 5 NA Intergenic Intergenic 117172 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 616-3 chr10 104383194 104383380 + 5 NA intron (NM_001008723, intron 9 of 17) L2c|LINE|L2 29454 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 1156 chr17 43928829 43929293 + 5 NA Intergenic LTR46|LTR|ERV1 -9200 NR_136406 107546764 Hs.144950 NR_136406 ENSG00000261514 LINC01976 - long intergenic non-protein coding RNA 1976 ncRNA 427.5-23 chr5 158401979 158402072 + 5 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 7748 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 1180.5-2 chr5 130254218 130254592 + 5 NA Intergenic Intergenic 349940 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 485-8 chr2 22312342 22312491 + 5 NA Intergenic Intergenic -224063 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 713.5-6 chr6 66309720 66309979 + 5 NA Intergenic Intergenic 521970 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 1285 chr5 82887475 82887960 + 5 NA Intergenic Intergenic -27881 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 827 chr17 63075046 63075450 + 5 NA intron (NM_025185, intron 3 of 25) intron (NM_025185, intron 3 of 25) 109013 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 1646 chr10 108443227 108443864 + 5 NA Intergenic Intergenic -374252 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 984 chr20 55971764 55972047 + 5 NA Intergenic Intergenic 33614 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 753-8 chr6 94456073 94456511 + 5 NA Intergenic MER89-int|LTR|ERV1 737989 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 473-11 chr2 23869563 23869734 + 5 NA intron (NR_125717, intron 9 of 28) intron (NR_125717, intron 9 of 28) 57475 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 518-14 chr2 78607039 78607225 + 5 NA Intergenic MER65A|LTR|ERV1 61601 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 1035-3 chr3 121675559 121675842 + 5 NA intron (NM_001256486, intron 17 of 21) L1ME3A|LINE|L1 -14797 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 635.5-11 chr6 62713186 62713316 + 5 NA Intergenic Intergenic -427024 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 441-36 chr7 5104607 5104780 + 5 NA Intergenic MIR|SINE|MIR 32633 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1045-3 chr3 165475847 165476077 + 5 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 269002 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 588-9 chr12 23327947 23328077 + 5 NA Intergenic Intergenic 152376 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 790-3 chr12 38699812 38700032 + 5 NA intron (NM_153634, intron 14 of 19) L1MB8|LINE|L1 205669 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 797.5-5 chr5 41091872 41092060 + 5 NA Intergenic L1M3c|LINE|L1 -20624 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 658-9 chr22 19584069 19584307 + 5 NA Intergenic Intergenic -17349 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 646 chr10 24392727 24392942 + 5 NA intron (NM_019590, intron 3 of 20) intron (NM_019590, intron 3 of 20) -56580 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 697.5-4 chr17 69077747 69077954 + 5 NA TTS (NM_080284) TTS (NM_080284) -16923 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 717-3 chr14 66929381 66929548 + 5 NA intron (NM_020806, intron 8 of 22) L1MA3|LINE|L1 -259976 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 425-21 chr15 78559823 78559951 + 5 NA Intergenic Intergenic -5633 NM_001307945 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 734-6 chr5 159311527 159311825 + 5 NA Intergenic MIR|SINE|MIR 18797 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 895 chr14 48729153 48729515 + 5 NA Intergenic Intergenic 857046 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 488.5-2 chr11 98791384 98791567 + 5 NA Intergenic L1ME2|LINE|L1 -229474 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 827.5-2 chr5 63269976 63270264 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger 691301 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 560-22 chr8 135066613 135066810 + 5 NA Intergenic LTR16A1|LTR|ERVL -167420 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 721-3 chr12 59772657 59772929 + 5 NA intron (NR_073055, intron 5 of 6) intron (NR_073055, intron 5 of 6) 83423 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 662.5-7 chr7 86916036 86916225 + 5 NA intron (NM_001291991, intron 11 of 20) intron (NM_001291991, intron 11 of 20) 49769 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 582-10 chr15 94658902 94659139 + 5 NA Intergenic Intergenic -196343 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 962-6 chr9 105474442 105474720 + 5 NA intron (NM_001287191, intron 4 of 13) intron (NM_001287191, intron 4 of 13) 26547 NM_001287191 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 968-3 chr8 131183233 131183575 + 5 NA Intergenic L1P4|LINE|L1 -142495 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 544.5-5 chr18 9120827 9120994 + 5 NA TTS (NR_110771) TTS (NR_110771) 15810 NR_110772 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 1205-2 chr3 193788309 193788570 + 5 NA Intergenic Intergenic 55570 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 862-4 chr2 158792566 158792836 + 5 NA Intergenic Intergenic -2616 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 609-2 chr14 53941808 53941982 + 5 NA Intergenic L1MA2|LINE|L1 6589 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1167-2 chr16 5303773 5304130 + 5 NA Intergenic Intergenic -206131 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 919 chr13 74802054 74802251 + 5 NA Intergenic L1MA3|LINE|L1 249309 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 1329-2 chr3 68353051 68353572 + 5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -147326 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 697.5-9 chr3 90475234 90475498 + 5 NA Intergenic ALR/Alpha|Satellite|centr 1367745 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 567-14 chr3 48706307 48706517 + 5 NA intron (NM_016291, intron 1 of 5) AluJr|SINE|Alu 10809 NR_027437 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 678.5-6 chr6 41018807 41019079 + 5 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 4337 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 848 chr14 56645900 56646103 + 5 NA intron (NM_017799, intron 15 of 15) AluJr|SINE|Alu 66203 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 952 chr2 80990704 80990959 + 5 NA Intergenic L1MA3|LINE|L1 476115 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 701-4 chr2 116606211 116606442 + 5 NA Intergenic Intergenic -1208365 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 856-12 chr8 79729158 79729400 + 5 NA Intergenic Intergenic 37196 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 757-6 chr4 44547042 44547232 + 5 NA Intergenic MIR|SINE|MIR -98328 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 806-6 chr6 64501233 64501540 + 5 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 694550 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 700-15 chr8 73547847 73548213 + 5 NA intron (NM_001164382, intron 11 of 13) MER2|DNA|TcMar-Tigger 127956 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 690.5-4 chr3 104894179 104894392 + 5 NA Intergenic Intergenic -472428 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 760-2 chr13 75385357 75385580 + 5 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 96700 NM_001286658 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 987-3 chr5 61227637 61227929 + 5 NA intron (NR_109908, intron 3 of 3) L1ME3E|LINE|L1 37146 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 541-11 chr20 58392353 58392527 + 5 NA intron (NR_036633, intron 1 of 3) intron (NR_036633, intron 1 of 3) 3211 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 630-8 chr13 55796998 55797233 + 5 NA Intergenic L1MCc|LINE|L1 622661 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 1296-2 chr4 84112340 84112679 + 5 NA intron (NR_125909, intron 7 of 8) L1ME3A|LINE|L1 186660 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 1162-2 chr8 84027385 84027629 + 5 NA Intergenic L2a|LINE|L2 -155280 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 486-29 chr3 129116316 129116471 + 5 NA intron (NM_001204890, intron 11 of 12) intron (NM_001204890, intron 11 of 12) 5411 NM_001204887 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 580-5 chr17 5600424 5600600 + 5 NA Intergenic Intergenic -16003 NM_033006 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 693.5 chr10 58175053 58175319 + 5 NA Intergenic Intergenic 92708 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 616-6 chr18 2789531 2789716 + 5 NA intron (NM_015295, intron 45 of 47) Tigger5b|DNA|TcMar-Tigger -57383 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 587-12 chr5 106364915 106365059 + 5 NA Intergenic Zaphod|DNA|hAT-Tip100 646027 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 550-13 chr2 51847968 51848107 + 5 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -522611 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 590.5 chr1 23922586 23922730 + 5 NA Intergenic Intergenic -6412 NR_039615 100616492 NR_039615 ENSG00000264926 MIR378F mir-378f microRNA 378f ncRNA 941.5-3 chr8 25512880 25513255 + 5 NA Intergenic Intergenic 53834 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 629-5 chr12 130663432 130663635 + 5 NA intron (NM_001351226, intron 1 of 21) L1MC4|LINE|L1 -29613 NM_001351228 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 656-12 chr7 96137544 96137996 + 5 NA intron (NM_001160210, intron 14 of 17) AluSc|SINE|Alu 81986 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 1108-3 chr8 125075575 125075836 + 5 NA intron (NM_014846, intron 7 of 28) intron (NM_014846, intron 7 of 28) 16087 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 1189-2 chr17 62848303 62848679 + 5 NA Intergenic L2|LINE|L2 39989 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 857.5 chr12 3136690 3136986 + 5 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 59459 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 740-5 chr20 56803295 56803517 + 5 NA Intergenic Intergenic 174100 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 508-12 chr20 14521438 14521549 + 5 NA intron (NM_001351663, intron 4 of 17) L2a|LINE|L2 -32891 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 683-4 chr6 42019558 42019737 + 5 NA intron (NM_001136017, intron 1 of 4) L1ME4a|LINE|L1 29247 NM_001136017 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 1167.5 chr7 27697573 27697998 + 5 NA Intergenic MER45B|DNA|hAT-Tip100 -34902 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 835-6 chr9 122955226 122955513 + 5 NA intron (NM_012197, intron 1 of 25) L2c|LINE|L2 14349 NM_012197 23637 Hs.271341 NM_012197 ENSG00000011454 RABGAP1 GAPCENA|TBC1D11 RAB GTPase activating protein 1 protein-coding 787.5-4 chr2 22465387 22465638 + 5 NA Intergenic Intergenic -70967 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 674-3 chr2 178705297 178705443 + 5 NA intron (NM_001256850, intron 100 of 312) intron (NM_001256850, intron 100 of 312) -71556 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 859.5-5 chr5 144778861 144779122 + 5 NA Intergenic Intergenic 573600 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1511 chr14 51537539 51538060 + 5 NA intron (NM_001042481, intron 1 of 14) L1MC1|LINE|L1 48671 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 865-4 chr5 73991671 73991879 + 5 NA Intergenic Intergenic 178229 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1208 chr4 181953847 181954135 + 5 NA Intergenic L1ME2|LINE|L1 -124018 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 1311 chr12 19152604 19153065 + 5 NA intron (NM_019012, intron 3 of 25) L1M5|LINE|L1 23101 NM_001143821 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 866-2 chr16 7062474 7062826 + 5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -270195 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 716.5-3 chr7 48280182 48280366 + 5 NA intron (NM_152701, intron 18 of 61) intron (NM_152701, intron 18 of 61) 108816 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 1055 chr8 136648356 136648704 + 5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 117732 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 995 chr1 218743161 218743558 + 5 NA intron (NR_031644, intron 4 of 6) AluY|SINE|Alu 175152 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 761 chr1 16249380 16249622 + 5 NA 3' UTR (NM_018994, exon 10 of 10) 3' UTR (NM_018994, exon 10 of 10) -12318 NM_030907 79363 Hs.546430 NM_030907 ENSG00000132881 CPLANE2 C1orf89|RSG1 ciliogenesis and planar polarity effector 2 protein-coding 862 chr1 171034395 171034607 + 5 NA intron (NM_001163629, intron 20 of 21) LTR33A_|LTR|ERVL -56404 NM_006894 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 856-9 chr5 55813876 55814305 + 5 NA intron (NM_024415, intron 19 of 21) intron (NM_024415, intron 19 of 21) -37267 NM_139017 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 707.5 chr14 62412760 62412987 + 5 NA Intergenic Intergenic -272900 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1013-2 chr2 169597017 169597311 + 5 NA intron (NM_004792, intron 1 of 13) intron (NM_004792, intron 1 of 13) 12813 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 1214 chr10 67987613 67988094 + 5 NA intron (NM_001278185, intron 15 of 23) intron (NM_001278185, intron 15 of 23) 23030 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 732.5-5 chr15 61968440 61968717 + 5 NA intron (NM_001018088, intron 28 of 81) intron (NM_001018088, intron 28 of 81) 91869 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 833-6 chr8 88060859 88061095 + 5 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -186962 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 665-6 chr22 41192741 41192903 + 5 NA intron (NR_110514, intron 2 of 2) MIR|SINE|MIR 4679 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 442-8 chr15 63257623 63257723 + 5 NA intron (NM_016530, intron 5 of 7) intron (NM_016530, intron 5 of 7) -19877 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 533-22 chr4 100388456 100388615 + 5 NA Intergenic Intergenic 6712 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 817.5 chr17 60818887 60819166 + 5 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 141175 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 625-19 chr8 105582014 105582232 + 5 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 262580 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 759.5-2 chr14 49336381 49336662 + 5 NA Intergenic Intergenic 249859 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 729-5 chr20 44962605 44962947 + 5 NA Intergenic Intergenic -2379 NM_006809 10953 Hs.517066 NM_006809 ENSG00000025772 TOMM34 HTOM34P|TOM34|URCC3 translocase of outer mitochondrial membrane 34 protein-coding 849-5 chr8 121761871 121762130 + 5 NA Intergenic Intergenic -120560 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 737.5-3 chr3 70224517 70224799 + 5 NA intron (NM_001364677, intron 2 of 3) intron (NM_001364677, intron 2 of 3) 87980 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 657-13 chr7 85155615 85155873 + 5 NA Intergenic Intergenic -33813 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1019-2 chr18 4397360 4397678 + 5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 57747 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 851-4 chr8 27239634 27239884 + 5 NA intron (NM_001283053, intron 6 of 7) intron (NM_001283053, intron 6 of 7) 18645 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 1072.5-2 chr7 123496303 123496707 + 5 NA intron (NR_104244, intron 7 of 13) intron (NR_104244, intron 7 of 13) 36443 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 658-8 chr21 28913634 28913789 + 5 NA Intergenic Intergenic -28338 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 803.5-2 chr4 65431047 65431321 + 5 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 238304 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 1382 chr3 651240 651616 + 5 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 59323 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 1015.5-2 chr8 84544354 84544590 + 5 NA intron (NM_001354308, intron 3 of 9) L1MC5|LINE|L1 128988 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 575.5-3 chr17 3210923 3211246 + 5 NA Intergenic Intergenic -4537 NM_014565 8383 Hs.532688 NM_014565 ENSG00000172146 OR1A1 OR17-7 olfactory receptor family 1 subfamily A member 1 protein-coding 729-7 chr3 166785746 166786006 + 5 NA Intergenic L1MC1|LINE|L1 -112807 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 598.5-13 chr8 90243677 90243942 + 5 NA intron (NR_051989, intron 1 of 3) L1ME3A|LINE|L1 22321 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 1012.5 chr2 211697675 211698017 + 5 NA intron (NM_001042599, intron 12 of 26) L1M5|LINE|L1 728514 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 715 chr12 21845458 21845664 + 5 NA intron (NM_005691, intron 24 of 37) intron (NM_005691, intron 24 of 37) -70855 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 651-11 chr7 124016745 124016935 + 5 NA intron (NR_133947, intron 4 of 4) intron (NR_133947, intron 4 of 4) 16227 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 781.5-7 chr3 35409184 35409465 + 5 NA Intergenic Intergenic -15301 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 920-6 chr8 127910335 127910590 + 5 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 38261 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 664-7 chr5 120247491 120247690 + 5 NA Intergenic L1MEd|LINE|L1 -216688 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 889 chr1 112966280 112966659 + 5 NA Intergenic MIR|SINE|MIR 10054 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 665-8 chr3 127531301 127531454 + 5 NA intron (NR_125397, intron 5 of 6) L1MDa|LINE|L1 6403 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 745-4 chr12 95701533 95701692 + 5 NA intron (NM_001329701, intron 5 of 9) intron (NM_001329701, intron 5 of 9) 52357 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 577.5-13 chr19 39798466 39798643 + 5 NA Intergenic L1MA7|LINE|L1 21960 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 1637 chr15 56985156 56985716 + 5 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 65991 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 766.5-4 chr17 78074203 78074545 + 5 NA intron (NM_018996, intron 8 of 20) Tigger17c|DNA|TcMar-Tigger 37425 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 1054-2 chr5 21128806 21129322 + 5 NA Intergenic L1MB3|LINE|L1 -330416 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 1148 chr6 85500064 85500566 + 5 NA Intergenic Intergenic 50232 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 901-3 chr16 46394267 46394718 + 5 NA Intergenic Intergenic 174605 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 762 chr1 30572829 30573086 + 5 NA Intergenic Intergenic -145815 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 725.5-5 chr10 129923342 129923499 + 5 NA intron (NM_001005463, intron 6 of 15) L1M4|LINE|L1 40854 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 601 chr10 3583089 3583262 + 5 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) -80337 NR_155743 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 510-21 chr7 82880106 82880293 + 5 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 282685 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 521-3 chr12 9868126 9868286 + 5 NA intron (NM_005127, intron 1 of 4) (AT)n|Simple_repeat|Simple_repeat 1653 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 561-17 chr3 38587039 38587180 + 5 NA intron (NM_198056, intron 15 of 27) MIRc|SINE|MIR 62563 NM_000335 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 790-8 chr6 41800669 41800909 + 5 NA intron (NM_001286554, intron 3 of 5) intron (NM_001286554, intron 3 of 5) 13346 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 868-2 chr1 237630123 237630315 + 5 NA intron (NM_001035, intron 41 of 104) intron (NM_001035, intron 41 of 104) 159100 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 756-3 chr1 246278907 246279117 + 5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 138400 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 934.5-4 chr3 32034768 32034995 + 5 NA Intergenic Intergenic -53031 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 1149.5 chr14 61706764 61707083 + 5 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 9301 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 744-10 chr4 101116664 101116819 + 5 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 124131 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 385-3 chr1 235551793 235552039 + 5 NA 3' UTR (NM_001098722, exon 4 of 4) 3' UTR (NM_001098722, exon 4 of 4) -47464 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 893 chr4 77876713 77876911 + 5 NA intron (NM_020236, intron 2 of 8) intron (NM_020236, intron 2 of 8) 13982 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 772-2 chr12 9676608 9676950 + 5 NA intron (NM_001197319, intron 1 of 2) L1MC1|LINE|L1 7066 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 645-15 chr8 137472496 137472665 + 5 NA Intergenic Intergenic -58992 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1320.5 chr8 37160776 37161253 + 5 NA Intergenic Intergenic 332899 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 975-7 chr9 26821752 26821987 + 5 NA Intergenic AluJb|SINE|Alu 70933 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 423-2 chr11 119922815 119922999 + 5 NA Intergenic L2a|LINE|L2 193324 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 556-6 chr14 98896963 98897088 + 5 NA Intergenic L1MB7|LINE|L1 185412 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 1257-2 chr2 190204288 190204731 + 5 NA 3' UTR (NM_014362, exon 14 of 14) 3' UTR (NM_014362, exon 14 of 14) 23646 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 615.5-9 chr4 123951972 123952221 + 5 NA Intergenic Intergenic 177832 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 579-27 chr8 118766303 118766518 + 5 NA Intergenic MER58B|DNA|hAT-Charlie -144447 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 964.5-3 chr3 106914632 106915079 + 5 NA Intergenic Intergenic 325783 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 654.5-7 chr8 78929947 78930094 + 5 NA Intergenic Intergenic 92491 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 784-4 chr22 41224287 41224524 + 5 NA intron (NM_031488, intron 9 of 16) MIRb|SINE|MIR -6778 NR_148200 100506544 Hs.627409 NR_148200 ENSG00000235513 LOC100506544 - uncharacterized LOC100506544 ncRNA 685.5-4 chr2 230941836 230942031 + 5 NA Intergenic Intergenic -16691 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 572-10 chr2 210884827 210885055 + 5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 267370 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 833-5 chr4 143518484 143518778 + 5 NA intron (NM_003601, intron 2 of 23) (TA)n|Simple_repeat|Simple_repeat -3794 NR_104027 100128055 Hs.707570 NR_104027 ENSG00000245112 SMARCA5-AS1 - SMARCA5 antisense RNA 1 ncRNA 1135 chr12 39605666 39605999 + 5 NA intron (NM_005164, intron 3 of 9) intron (NM_005164, intron 3 of 9) 13971 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 1008.5 chr5 108216188 108216415 + 5 NA intron (NM_001163315, intron 5 of 8) L1MB5|LINE|L1 165797 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 866.5 chr17 3379547 3379746 + 5 NA Intergenic Intergenic 18764 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 682.5-16 chrX 75111392 75111601 + 5 NA intron (NM_001271696, intron 3 of 15) MIR|SINE|MIR 44787 NM_001271699 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 685-6 chr2 14698482 14698710 + 5 NA Intergenic Intergenic 65879 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 758.5-3 chr7 14320626 14320988 + 5 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -329382 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 843 chr1 174187644 174188073 + 5 NA intron (NM_001366445, intron 1 of 13) intron (NM_001366445, intron 1 of 13) 28338 NM_001366447 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 864-7 chr7 84486565 84486848 + 5 NA Intergenic Intergenic -45770 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 992.5 chr2 238214219 238214604 + 5 NA Intergenic L1M1|LINE|L1 -10716 NM_030768 80895 Hs.92033 NM_030768 ENSG00000132323 ILKAP ILKAP2|ILKAP3|PP2C-DELTA|PPM1O ILK associated serine/threonine phosphatase protein-coding 778.5-4 chr2 165091717 165091950 + 5 NA intron (NM_006922, intron 27 of 27) intron (NM_006922, intron 27 of 27) 112217 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 1233-2 chr8 86622737 86623149 + 5 NA intron (NM_019098, intron 13 of 17) L3|LINE|CR1 108508 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 651-10 chr6 19072011 19072141 + 5 NA intron (NR_110860, intron 10 of 10) HAL1b|LINE|L1 108404 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 895.5 chr12 32969439 32969746 + 5 NA Intergenic Intergenic -72746 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 476-29 chr5 42015003 42015131 + 5 NA Intergenic Zaphod3|DNA|hAT-Tip100 89786 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 502-4 chr13 102432557 102432741 + 5 NA Intergenic L1M2|LINE|L1 -30206 NM_001321945 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 839-7 chr8 84884940 84885257 + 5 NA intron (NM_001354323, intron 7 of 7) intron (NM_001354323, intron 7 of 7) 179171 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 915.5 chr12 12027290 12027559 + 5 NA Intergenic L1MEg|LINE|L1 -22437 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 1222-3 chr8 123325809 123326089 + 5 NA exon (NM_014109, exon 26 of 28) exon (NM_014109, exon 26 of 28) -22085 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 507-31 chr6 93601649 93601771 + 5 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat -102307 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 801-7 chr22 42885547 42885810 + 5 NA intron (NM_001184970, intron 5 of 10) intron (NM_001184970, intron 5 of 10) -28405 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 648-10 chr3 72763313 72763499 + 5 NA intron (NM_018130, intron 10 of 10) intron (NM_018130, intron 10 of 10) 85039 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 601.5-8 chr2 30265216 30265358 + 5 NA Intergenic L1ME4c|LINE|L1 33753 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 1075 chr10 123532905 123533320 + 5 NA Intergenic L1PA16|LINE|L1 -133243 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 858-5 chrX 95993332 95993559 + 5 NA Intergenic Intergenic 344457 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 595-13 chr4 30848374 30848531 + 5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 128083 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 468-3 chr1 239191936 239192118 + 5 NA Intergenic Intergenic -194541 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 787.5-3 chr13 44653033 44653249 + 5 NA intron (NR_149082, intron 2 of 3) intron (NR_149082, intron 2 of 3) 12772 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 745.5-9 chr2 59742658 59742983 + 5 NA Intergenic Intergenic 525112 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 1022-3 chr7 96771800 96772082 + 5 NA Intergenic Intergenic -62050 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 659-2 chr11 22872423 22872601 + 5 NA Intergenic Intergenic -12038 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 887-3 chrX 52796173 52796474 + 5 NA 3' UTR (NM_001009616, exon 2 of 2) 3' UTR (NM_001009616, exon 2 of 2) 1104 NM_001009616 494197 Hs.535218 NM_001009616 ENSG00000204363 SPANXN5 CT11.10|SPANX-N5 SPANX family member N5 protein-coding 796.5 chr2 39190958 39191253 + 5 NA intron (NM_001009565, intron 4 of 7) MLT1C|LTR|ERVL-MaLR 38483 NM_001346911 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 744-9 chr21 17776844 17777040 + 5 NA TTS (NR_038870) TTS (NR_038870) 15567 NR_038871 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 972-2 chr3 4395001 4395258 + 5 NA intron (NM_001164674, intron 6 of 7) MIRc|SINE|MIR 72140 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 581-2 chr1 205575951 205576156 + 5 NA intron (NM_181644, intron 1 of 9) intron (NM_181644, intron 1 of 9) -6748 NR_027086 284578 Hs.537020 NR_027086 MFSD4A-AS1 - MFSD4A antisense RNA 1 ncRNA 717-8 chr4 27644251 27644441 + 5 NA Intergenic Intergenic 426867 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 633-6 chr3 182108654 182108818 + 5 NA Intergenic L3|LINE|CR1 156372 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 556.5-18 chr6 50210480 50210703 + 5 NA Intergenic L1MDa|LINE|L1 -160662 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 967 chr11 104246967 104247263 + 5 NA Intergenic Intergenic -82968 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 745-5 chr13 107004322 107004529 + 5 NA Intergenic Intergenic 316538 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 554-7 chr11 26695973 26696221 + 5 NA intron (NM_178498, intron 8 of 14) L2a|LINE|L2 25963 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 410-25 chr5 38362459 38362556 + 5 NA intron (NM_152403, intron 5 of 21) intron (NM_152403, intron 5 of 21) 40964 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 806-3 chr14 68880970 68881218 + 5 NA intron (NM_001102, intron 16 of 20) intron (NM_001102, intron 16 of 20) -84851 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 1149 chr6 141534849 141535165 + 5 NA Intergenic L1MD2|LINE|L1 553792 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 1164 chr8 65001676 65001924 + 5 NA Intergenic MER90a|LTR|ERV1 178540 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 611-5 chr2 14291104 14291322 + 5 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 109745 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 474-22 chr4 106664565 106664732 + 5 NA Intergenic L1ME1|LINE|L1 231024 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 977 chr3 95474837 95475207 + 5 NA Intergenic MER101-int|LTR|ERV1 208171 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 471-11 chr14 25479757 25479923 + 5 NA Intergenic Intergenic -429543 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 550.5-11 chr4 30779344 30779563 + 5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 59084 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 957.5 chr2 45525490 45525719 + 5 NA intron (NM_018079, intron 14 of 20) L1MA8|LINE|L1 85663 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 518-10 chr16 47288041 47288262 + 5 NA intron (NM_030790, intron 10 of 17) L1MA5|LINE|L1 144083 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 911-4 chr8 127077682 127078014 + 5 NA intron (NR_119373, intron 2 of 3) L1MA10|LINE|L1 -2026 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 846.5-2 chr20 23942105 23942313 + 5 NA Intergenic L1PB4|LINE|L1 44666 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 1265 chr2 32557530 32557878 + 5 NA non-coding (NR_125793, exon 2 of 2) non-coding (NR_125793, exon 2 of 2) 17114 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 1067.5-2 chr5 72334797 72335175 + 5 NA intron (NM_001284405, intron 4 of 8) intron (NM_001284405, intron 4 of 8) 14613 NM_001284403 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 661-3 chr12 28863129 28863369 + 5 NA Intergenic L1M5|LINE|L1 -286029 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 707-9 chr3 76089985 76090164 + 5 NA Intergenic L1MC1|LINE|L1 -304525 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 649-8 chr3 64879887 64880072 + 5 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -191979 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 519.5-3 chr10 11265542 11265787 + 5 NA intron (NM_001326333, intron 5 of 11) intron (NM_001326333, intron 5 of 11) 79010 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 557-26 chrX 49979398 49979568 + 5 NA intron (NM_001127899, intron 3 of 14) intron (NM_001127899, intron 3 of 14) -23665 NR_030241 693124 NR_030241 ENSG00000207758 MIR532 MIRN532|hsa-mir-532|mir-532 microRNA 532 ncRNA 598.5-2 chr13 111298992 111299152 + 5 NA intron (NM_001354049, intron 19 of 21) intron (NM_001354049, intron 19 of 21) -17113 NM_001303133 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 943-4 chr6 130150900 130151218 + 5 NA intron (NM_001277185, intron 8 of 10) intron (NM_001277185, intron 8 of 10) 64826 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 558-4 chr13 85517913 85518130 + 5 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 154418 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 607-26 chr9 90975736 90975967 + 5 NA Intergenic Intergenic 99281 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 514-22 chr8 120773508 120773635 + 5 NA intron (NR_125419, intron 3 of 4) L2c|LINE|L2 12318 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 630.5-9 chr5 63326091 63326251 + 5 NA Intergenic L1M5|LINE|L1 636121 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1427.5 chr4 60825958 60826355 + 5 NA Intergenic Intergenic -96463 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 897 chr11 105632783 105633204 + 5 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 22287 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 797.5-4 chr3 109873792 109874097 + 5 NA Intergenic Intergenic 271116 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 826-3 chr3 95500370 95500712 + 5 NA Intergenic L1MC|LINE|L1 182652 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 574.5-2 chr1 191730902 191731141 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR -427441 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 1138 chr2 153985942 153986322 + 5 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 41738 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 751-2 chr2 40443346 40443527 + 5 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 8248 NM_001351489 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 651-12 chr8 95101048 95101296 + 5 NA intron (NR_148914, intron 9 of 11) intron (NR_148914, intron 9 of 11) -27990 NR_132986 105375650 Hs.665518 NR_132986 ENSG00000245080 MIR3150BHG - MIR3150B host gene ncRNA 1360 chr3 79284502 79284889 + 5 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -127032 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 898.5-5 chr8 114679235 114679424 + 5 NA Intergenic Intergenic 988684 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 947-2 chr5 40046073 40046304 + 5 NA Intergenic Intergenic -6103 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 713-7 chr8 86912897 86913169 + 5 NA intron (NM_173538, intron 3 of 10) Tigger3b|DNA|TcMar-Tigger 46618 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1090 chr2 34182589 34182974 + 5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 115555 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 837.5 chr14 42929500 42929755 + 5 NA Intergenic Intergenic 1322771 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 671-12 chr4 142579976 142580278 + 5 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 266408 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 999.5 chr16 24703471 24703759 + 5 NA intron (NM_001351850, intron 2 of 23) L1MB8|LINE|L1 -26036 NM_001330520 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 913-4 chr2 174251524 174251828 + 5 NA Intergenic Intergenic -3144 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 748-2 chr13 71885286 71885553 + 5 NA Intergenic L1M5|LINE|L1 -18215 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 1104 chr10 67290303 67290558 + 5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 112980 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 756.5-4 chr4 69908348 69908646 + 5 NA Intergenic Intergenic -22571 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 658-6 chr2 208703833 208704077 + 5 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 161313 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 765-11 chr9 95771049 95771262 + 5 NA Intergenic Intergenic -104536 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 745-6 chr15 67679909 67680194 + 5 NA intron (NM_001206804, intron 13 of 21) L1MB7|LINE|L1 130957 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 612-11 chr5 90221529 90221760 + 5 NA intron (NR_120601, intron 3 of 5) intron (NR_120601, intron 3 of 5) 68427 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 1075-2 chr8 115375534 115375830 + 5 NA Intergenic MLT1F|LTR|ERVL-MaLR 292331 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1036.5-3 chr4 74589190 74589426 + 5 NA Intergenic AluSz|SINE|Alu 144172 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 604-15 chr3 115056060 115056223 + 5 NA intron (NM_015642, intron 1 of 9) L1M5|LINE|L1 15273 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 753-12 chr8 131396679 131396929 + 5 NA Intergenic MLT1L|LTR|ERVL-MaLR -355895 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 748-5 chr21 31311042 31311215 + 5 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 33226 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 930-2 chr2 27274800 27275113 + 5 NA promoter-TSS (NR_130126) promoter-TSS (NR_130126) 390 NM_001318951 7781 Hs.467981 NM_003459 ENSG00000115194 SLC30A3 ZNT3 solute carrier family 30 member 3 protein-coding 1263-2 chr13 36722586 36723139 + 4.5 NA Intergenic Intergenic 48842 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 475-24 chr6 38627407 38627568 + 4.5 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 12442 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 678.5-7 chr7 17078857 17079108 + 4.5 NA Intergenic Intergenic -196999 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 796.5-3 chr3 31537787 31537985 + 4.5 NA intron (NM_178862, intron 1 of 15) intron (NM_178862, intron 1 of 15) 4961 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 810.5-2 chr16 72466852 72467238 + 4.5 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 197925 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 907 chr3 111906725 111907022 + 4.5 NA intron (NM_001134437, intron 3 of 17) intron (NM_001134437, intron 3 of 17) 47046 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 814-4 chr6 48401793 48402077 + 4.5 NA Intergenic Intergenic -333246 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 380.5-4 chr10 117155731 117155953 + 4.5 NA intron (NR_121651, intron 2 of 2) MIR3|SINE|MIR 11932 NR_037436 100500893 NR_037436 ENSG00000266782 MIR3663 - microRNA 3663 ncRNA 478.5-29 chr9 91734562 91734686 + 4.5 NA intron (NM_001318204, intron 5 of 7) intron (NM_001318204, intron 5 of 7) -98279 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 657.5-2 chr10 121040345 121040927 + 4.5 NA Intergenic L1ME4b|LINE|L1 189274 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 478.5-26 chr8 135535385 135535524 + 4.5 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 77998 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 769.5-9 chr5 41956056 41956390 + 4.5 NA Intergenic L1MEc|LINE|L1 30942 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 505-21 chr5 131751588 131751782 + 4.5 NA intron (NM_133372, intron 1 of 17) L1MB7|LINE|L1 45332 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 382.5-17 chr5 168493794 168493894 + 4.5 NA intron (NM_002887, intron 3 of 14) intron (NM_002887, intron 3 of 14) 7373 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 739.5 chr12 33416301 33416486 + 4.5 NA intron (NM_198992, intron 2 of 6) L2a|LINE|L2 23426 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 869.5-4 chr21 29274111 29274520 + 4.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -24607 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 828-5 chr8 100250607 100250966 + 4.5 NA Intergenic L1M5|LINE|L1 51407 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 1072.5 chr7 34279989 34280398 + 4.5 NA Intergenic Charlie2a|DNA|hAT-Charlie 374654 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 427.5-3 chr1 223405440 223405542 + 4.5 NA Intergenic L1MDa|LINE|L1 12076 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 917 chr11 18501357 18501730 + 4.5 NA intron (NM_006292, intron 7 of 9) L1MA4A|LINE|L1 25399 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 742.5-8 chr5 7727177 7727433 + 4.5 NA intron (NM_020546, intron 14 of 24) intron (NM_020546, intron 14 of 24) 123828 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 1198 chr17 58401393 58401779 + 4.5 NA intron (NM_001305544, intron 2 of 9) A-rich|Low_complexity|Low_complexity 1135 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 1048-3 chr15 67952429 67952712 + 4.5 NA Intergenic L1MC1|LINE|L1 -101609 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 700-13 chr6 67694819 67695009 + 4.5 NA Intergenic Intergenic -360437 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 922.5 chr7 11824924 11825348 + 4.5 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 7062 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 588.5-13 chr5 65092282 65092496 + 4.5 NA Intergenic L1ME3A|LINE|L1 323459 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 912.5 chr17 47247959 47248261 + 4.5 NA Intergenic FLAM_C|SINE|Alu -5732 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 656.5 chr1 200852597 200852799 + 4.5 NA intron (NM_001297707, intron 13 of 17) intron (NM_001297707, intron 13 of 17) -20283 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 579-13 chr20 53661612 53661857 + 4.5 NA Intergenic Intergenic 53380 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 975-5 chr5 3852382 3853025 + 4.5 NA Intergenic Intergenic 256871 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 877.5 chr10 62934457 62934798 + 4.5 NA Intergenic Intergenic -115460 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 1114.5 chr14 61545426 61545908 + 4.5 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 24527 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 868.5-2 chr19 20317541 20317784 + 4.5 NA Intergenic L1M4|LINE|L1 81692 NR_036053 100302179 NR_036053 ENSG00000238517 MIR1270 MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270 microRNA 1270 ncRNA 975-8 chr9 82297331 82297583 + 4.5 NA Intergenic HAL1|LINE|L1 308685 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1163 chr6 123287454 123287979 + 4.5 NA intron (NM_006073, intron 24 of 40) intron (NM_006073, intron 24 of 40) -151888 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 391.5-23 chr20 8820255 8820350 + 4.5 NA intron (NM_182734, intron 32 of 32) L1ME3E|LINE|L1 -10883 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 498-22 chr4 27409269 27409384 + 4.5 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat 191847 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 867 chr1 34689008 34689356 + 4.5 NA Intergenic MIRb|SINE|MIR -19488 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 445.5-21 chr5 23497190 23497376 + 4.5 NA Intergenic Intergenic -10326 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 469.5-3 chr1 222776968 222777128 + 4.5 NA Intergenic L1MEc|LINE|L1 37364 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 596-3 chr12 10317781 10317956 + 4.5 NA TTS (NM_007334) TTS (NM_007334) 9998 NR_147040 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 683.5 chr13 74644237 74644603 + 4.5 NA Intergenic L2|LINE|L2 91577 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 454.5-2 chr13 109855394 109855526 + 4.5 NA Intergenic L1M8|LINE|L1 -68877 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 836-5 chr3 182109708 182110117 + 4.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 157548 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 797.5-6 chr8 117610430 117610717 + 4.5 NA Intergenic MIR|SINE|MIR 89860 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 1010-3 chr8 129814293 129814767 + 4.5 NA Intergenic L1PA16|LINE|L1 -27906 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 823.5 chr11 31260368 31260696 + 4.5 NA intron (NM_001367979, intron 8 of 38) intron (NM_001367979, intron 8 of 38) 109207 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1003.5 chr10 100258374 100258673 + 4.5 NA intron (NM_001303406, intron 1 of 10) intron (NM_001303406, intron 1 of 10) 9115 NM_001303406 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 1054 chr16 83553352 83553604 + 4.5 NA intron (NM_001220489, intron 6 of 12) L1ME4a|LINE|L1 45132 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 817.5-3 chr6 129813942 129814220 + 4.5 NA Intergenic Intergenic 47234 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 580-2 chr10 104780738 104780989 + 4.5 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -114647 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 801-4 chr16 822590 822801 + 4.5 NA Intergenic Intergenic 17252 NM_001013638 388199 Hs.528461 NM_001013638 PRR25 gs64 proline rich 25 protein-coding 732-8 chr22 32430257 32430450 + 4.5 NA intron (NM_174932, intron 11 of 14) MIR3|SINE|MIR -18106 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 632.5-7 chr7 53454589 53454762 + 4.5 NA Intergenic Intergenic 357256 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 385.5 chr1 85880536 85880666 + 4.5 NA intron (NM_152890, intron 32 of 59) L1MC2|LINE|L1 -172168 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 952.5-3 chr2 28901944 28902312 + 4.5 NA intron (NM_015131, intron 2 of 17) intron (NM_015131, intron 2 of 17) 7461 NM_015131 23160 Hs.622982 NM_015131 ENSG00000163811 WDR43 NET12|UTP5 WD repeat domain 43 protein-coding 874-3 chr2 4593245 4593696 + 4.5 NA Intergenic Intergenic 62752 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 856-11 chr7 45409829 45410183 + 4.5 NA Intergenic LTR69|LTR|ERVL -164134 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 998.5 chr1 212905338 212905722 + 4.5 NA Intergenic L1M3c|LINE|L1 -45011 NM_001136475 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 707-2 chr10 93659823 93660059 + 4.5 NA intron (NM_006204, intron 18 of 21) intron (NM_006204, intron 18 of 21) 42631 NM_001347713 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 740.5-2 chr10 56787298 56787570 + 4.5 NA Intergenic Intergenic -426161 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 694-7 chr2 230274594 230274760 + 4.5 NA intron (NM_001278453, intron 12 of 23) intron (NM_001278453, intron 12 of 23) 48941 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 1036.5 chr15 70997554 70997980 + 4.5 NA intron (NM_017691, intron 11 of 15) L1M4|LINE|L1 105324 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 645-8 chr18 72497400 72497573 + 4.5 NA Intergenic Intergenic 46856 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 1042-2 chr4 94596419 94596765 + 4.5 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 144650 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 811.5-3 chr6 46086938 46087303 + 4.5 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -6772 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 782.5 chr14 66215532 66215856 + 4.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -270677 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 754.5 chr1 194804905 194805210 + 4.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 1283658 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 815.5-2 chr3 57834020 57834318 + 4.5 NA intron (NM_001304420, intron 2 of 21) L1M2|LINE|L1 -55745 NM_001311178 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 783-2 chr10 36565912 36566236 + 4.5 NA Intergenic Intergenic -559783 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 600-4 chr1 117903481 117903686 + 4.5 NA intron (NM_001135589, intron 6 of 12) L1MB7|LINE|L1 26038 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 1748.5 chr10 30334109 30334822 + 4.5 NA intron (NM_018109, intron 4 of 8) AluSx|SINE|Alu 14873 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 557.5-7 chr19 1870673 1870796 + 4.5 NA Intergenic AluSx|SINE|Alu -7155 NM_031918 83855 Hs.136280 NM_031918 ENSG00000129911 KLF16 BTEB4|DRRF|NSLP2 Kruppel like factor 16 protein-coding 699-12 chr6 115934156 115934446 + 4.5 NA 3' UTR (NM_002031, exon 8 of 8) 3' UTR (NM_002031, exon 8 of 8) -104430 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 745-11 chr7 36140546 36140792 + 4.5 NA Intergenic L1MB8|LINE|L1 -12585 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 989-2 chr16 49465301 49465598 + 4.5 NA Intergenic CpG 53136 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 667-2 chr17 52434965 52435249 + 4.5 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 44585 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 1003.5-2 chr3 187446158 187446606 + 4.5 NA promoter-TSS (NR_146716) promoter-TSS (NR_146716) -664 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 888 chr10 350348 350578 + 4.5 NA intron (NM_014974, intron 24 of 36) intron (NM_014974, intron 24 of 36) 170469 NM_001202468 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 602 chr1 39853205 39853364 + 4.5 NA intron (NM_001312692, intron 1 of 8) intron (NM_001312692, intron 1 of 8) 30220 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 643.5-3 chr17 70886560 70886868 + 4.5 NA Intergenic Intergenic 315465 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 559-11 chr2 52133304 52133519 + 4.5 NA intron (NR_135237, intron 7 of 10) L1MEf|LINE|L1 -237237 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 847.5-6 chr9 76440457 76440796 + 4.5 NA Intergenic Intergenic -1040 NM_001097634 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 1188 chr5 56756219 56756516 + 4.5 NA Intergenic L1MC1|LINE|L1 16504 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 660-18 chr8 87382063 87382322 + 4.5 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 491823 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 641.5-6 chr4 136596085 136596316 + 4.5 NA Intergenic L1PREC2|LINE|L1 -597556 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 927-4 chr8 110316999 110317344 + 4.5 NA Intergenic Intergenic -341400 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 565.5-3 chr1 231459720 231459900 + 4.5 NA Intergenic L1MA6|LINE|L1 16715 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 643.5-7 chr2 221181571 221181727 + 4.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 390655 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 914.5 chr2 22351244 22351520 + 4.5 NA Intergenic L2b|LINE|L2 -185097 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1177.5 chr3 20028747 20029173 + 4.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -11486 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 669.5-3 chr12 2646950 2647213 + 4.5 NA intron (NM_001129836, intron 31 of 46) intron (NM_001129836, intron 31 of 46) 25139 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 797-2 chr10 16704970 16705205 + 4.5 NA intron (NM_152724, intron 6 of 7) L1MB3|LINE|L1 112337 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 772.5 chr11 21233376 21233706 + 4.5 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 563955 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 848.5-4 chr22 27414362 27414767 + 4.5 NA Intergenic Intergenic 103913 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 1227 chr10 50867516 50868020 + 4.5 NA intron (NM_001198818, intron 1 of 13) intron (NM_001198818, intron 1 of 13) 17859 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 686-8 chr8 129293570 129293790 + 4.5 NA Intergenic Intergenic -52440 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 691.5-6 chr2 57755650 57755876 + 4.5 NA Intergenic Intergenic -151888 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 1069 chr14 43178133 43178522 + 4.5 NA Intergenic L2a|LINE|L2 1328956 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 454.5-11 chr20 13329561 13329786 + 4.5 NA Intergenic L1MEf|LINE|L1 -89986 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 669-12 chr21 24187740 24187920 + 4.5 NA Intergenic MLT2C1|LTR|ERVL 133547 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 838-5 chr17 21292140 21292419 + 4.5 NA intron (NM_002756, intron 1 of 11) intron (NM_002756, intron 1 of 11) 4243 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 630 chr1 28210645 28210845 + 4.5 NA intron (NM_014280, intron 3 of 8) intron (NM_014280, intron 3 of 8) -16809 NM_001164721 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 1034.5-2 chr7 11570911 11571266 + 4.5 NA intron (NM_015204, intron 4 of 26) L4_A_Mam|LINE|RTE-X 261110 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 1120 chr18 46570559 46570886 + 4.5 NA intron (NM_144612, intron 15 of 39) MER30|DNA|hAT-Charlie -11410 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 1049.5 chr12 40338189 40338627 + 4.5 NA intron (NM_198578, intron 40 of 50) intron (NM_198578, intron 40 of 50) -54986 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 597-5 chr14 58767708 58768003 + 4.5 NA Intergenic L3|LINE|CR1 -60433 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 491-15 chr3 40035344 40035496 + 4.5 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -64591 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 613.5-12 chr9 132941259 132941405 + 4.5 NA intron (NM_000368, intron 1 of 22) intron (NM_000368, intron 1 of 22) 3284 NM_001162427 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 713-4 chr3 30076162 30076326 + 4.5 NA Intergenic Intergenic -142088 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 796.5-4 chr7 48252973 48253400 + 4.5 NA intron (NM_152701, intron 15 of 61) intron (NM_152701, intron 15 of 61) 81728 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 592.5-14 chr6 65086366 65086510 + 4.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -214980 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 935.5-2 chr5 156842916 156843367 + 4.5 NA Intergenic L2|LINE|L2 -7154 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 895-3 chr6 151908353 151908618 + 4.5 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 99378 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 642-18 chr8 121575879 121576163 + 4.5 NA Intergenic Intergenic -63325 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 841-4 chr7 98070997 98071350 + 4.5 NA Intergenic LTR33|LTR|ERVL -35689 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 813 chr14 20579637 20579980 + 4.5 NA Intergenic Intergenic -8416 NR_122043 254028 Hs.652569 NR_122043 ENSG00000258573 LOC254028 - uncharacterized LOC254028 ncRNA 586.5-5 chr12 58247554 58247753 + 4.5 NA Intergenic L2b|LINE|L2 159761 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 611-8 chr3 83862960 83863188 + 4.5 NA Intergenic Intergenic 1006501 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 913.5 chr14 39087489 39087804 + 4.5 NA intron (NM_006364, intron 5 of 19) intron (NM_006364, intron 5 of 19) -15494 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 593-3 chr14 50437629 50437838 + 4.5 NA intron (NM_198794, intron 24 of 31) MER5A|DNA|hAT-Charlie -40435 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 615-13 chr3 182498164 182498334 + 4.5 NA TTS (NR_134941) TTS (NR_134941) 8875 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 581.5-4 chr12 14187180 14187370 + 4.5 NA Intergenic Intergenic -178357 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 566.5-5 chr2 114237234 114237466 + 4.5 NA Intergenic Intergenic -205291 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 591-14 chr9 28420145 28420295 + 4.5 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 299085 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1158 chr1 73756792 73757220 + 4.5 NA Intergenic Intergenic 82327 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 477.5-26 chr8 121548424 121548556 + 4.5 NA Intergenic Intergenic -90856 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 1146-2 chr22 17540852 17541159 + 4.5 NA intron (NM_001290046, intron 14 of 18) AluJr4|SINE|Alu -22434 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 686-7 chr5 123304660 123304932 + 4.5 NA Intergenic Intergenic 118796 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 455.5 chr1 14643112 14643253 + 4.5 NA intron (NM_201628, intron 1 of 14) L1PA14|LINE|L1 44465 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 720.5-3 chr10 76343512 76343720 + 4.5 NA intron (NM_001305581, intron 6 of 6) L1MC4|LINE|L1 -544428 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 521-16 chr6 53708543 53708720 + 4.5 NA Intergenic L1MEd|LINE|L1 -42875 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 609-16 chr5 31314333 31314607 + 4.5 NA intron (NM_001362435, intron 8 of 10) intron (NM_001362435, intron 8 of 10) 120784 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 462.5-19 chr5 158042984 158043178 + 4.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -183936 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 542-25 chr9 28130348 28130751 + 4.5 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 -556683 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 566-5 chr15 37109060 37109310 + 4.5 NA Intergenic Intergenic -7874 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 1310-2 chr2 51046453 51047036 + 4.5 NA intron (NR_135237, intron 1 of 10) MER5B|DNA|hAT-Charlie 14143 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 856-4 chr2 112862144 112862427 + 4.5 NA Intergenic MER4-int|LTR|ERV1 -25506 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 704.5-7 chr9 89249305 89249505 + 4.5 NA Intergenic MER31A|LTR|ERV1 -61790 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 594.5-9 chr7 87344113 87344390 + 4.5 NA intron (NR_015381, intron 1 of 2) intron (NR_015381, intron 1 of 2) 1241 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 859-2 chr12 3885248 3885596 + 4.5 NA Intergenic Intergenic -11974 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 598.5-11 chr7 32148459 32148725 + 4.5 NA intron (NM_001322059, intron 3 of 17) Charlie5|DNA|hAT-Charlie -77156 NM_005020 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 946-2 chr2 39866240 39866520 + 4.5 NA Intergenic MER70B|LTR|ERVL -51254 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 530-3 chr1 113239635 113239850 + 4.5 NA Intergenic MIRb|SINE|MIR -33489 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 832.5-2 chr19 28400770 28401002 + 4.5 NA Intergenic MIRb|SINE|MIR -205802 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 675-3 chr15 89969377 89969613 + 4.5 NA Intergenic L1M3|LINE|L1 -31829 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 553.5-14 chr5 50710149 50710423 + 4.5 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 42872 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 593.5-7 chr4 31156836 31157003 + 4.5 NA Intergenic Intergenic -14225 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 625-4 chr15 92373324 92373548 + 4.5 NA Intergenic (CTTTT)n|Simple_repeat|Simple_repeat -20445 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 1218.5 chr2 238582559 238582931 + 4.5 NA Intergenic L1MCa|LINE|L1 -27246 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 783.5 chr10 91983475 91983785 + 4.5 NA intron (NM_003972, intron 18 of 37) intron (NM_003972, intron 18 of 37) 59860 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 885.5-2 chr2 143069691 143069951 + 4.5 NA Intergenic Intergenic -59598 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 913-6 chr5 61881955 61882321 + 4.5 NA Intergenic Intergenic -146440 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 682.5-4 chr13 66518395 66518633 + 4.5 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 300264 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 507-3 chr10 67724801 67725058 + 4.5 NA Intergenic Intergenic -28734 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 767.5-4 chr4 35815209 35815488 + 4.5 NA Intergenic Intergenic 428591 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 972-3 chr5 109284524 109284811 + 4.5 NA intron (NR_149040, intron 3 of 3) L1PBa|LINE|L1 41702 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 969-2 chr20 61751777 61752106 + 4.5 NA intron (NM_001252339, intron 2 of 14) L1ME3B|LINE|L1 -32193 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 625-17 chr6 75986751 75986924 + 4.5 NA intron (NM_001563, intron 12 of 16) intron (NM_001563, intron 12 of 16) 85825 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 825-3 chr5 170058106 170058389 + 4.5 NA intron (NR_156756, intron 45 of 52) intron (NR_156756, intron 45 of 52) 29759 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 546-2 chr10 46269037 46269177 + 4.5 NA intron (NR_103827, intron 1 of 4) intron (NR_103827, intron 1 of 4) 501 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 1027.5 chr2 60668833 60669155 + 4.5 NA Intergenic Intergenic -87274 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 880.5-2 chr8 130406783 130407239 + 4.5 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 36649 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 1178.5 chr14 52415100 52415432 + 4.5 NA Intergenic Intergenic 100954 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 634.5-3 chr15 76516911 76517075 + 4.5 NA intron (NR_148227, intron 23 of 32) MIRb|SINE|MIR -69654 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 394.5-17 chr22 26460511 26460657 + 4.5 NA intron (NR_146315, intron 12 of 14) intron (NR_146315, intron 12 of 14) 18904 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 778.5-6 chr8 92169055 92169441 + 4.5 NA Intergenic Intergenic -65863 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 946.5 chr14 66696078 66696443 + 4.5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 188853 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 1018 chr2 189387355 189387654 + 4.5 NA Intergenic L1M5|LINE|L1 -53929 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 539.5-13 chr2 179961748 179961941 + 4.5 NA intron (NM_020943, intron 13 of 19) intron (NM_020943, intron 13 of 19) 45453 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 486-30 chr3 180801876 180802032 + 4.5 NA intron (NR_109986, intron 3 of 13) L1MA7|LINE|L1 68224 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 726.5-3 chr19 16161756 16162053 + 4.5 NA intron (NM_054113, intron 5 of 5) AluSz|SINE|Alu 11621 NM_001300922 117286 Hs.255432 NM_054113 ENSG00000141977 CIB3 KIP3 calcium and integrin binding family member 3 protein-coding 516-2 chr10 31466678 31466855 + 4.5 NA intron (NM_001323678, intron 2 of 6) L1M2|LINE|L1 -67011 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 597.5-4 chr2 54840035 54840221 + 4.5 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 115116 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 982.5 chr5 57834627 57834913 + 4.5 NA Intergenic Intergenic 64392 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 727.5-7 chr5 30257202 30257511 + 4.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 376796 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 882-2 chr3 28783249 28783509 + 4.5 NA Intergenic Intergenic 208101 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 1039.5-2 chr11 44116296 44116550 + 4.5 NA intron (NM_207122, intron 4 of 13) L1MB7|LINE|L1 20226 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 984.5 chr3 124047120 124047423 + 4.5 NA Intergenic L2c|LINE|L2 -47410 NM_001322988 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 466.5-4 chr13 113498093 113498326 + 4.5 NA intron (NR_146222, intron 2 of 11) intron (NR_146222, intron 2 of 11) 7188 NM_001349741 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 859.5-2 chr15 98552363 98552609 + 4.5 NA Intergenic UCON54|Unknown|Unknown -38150 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 1141.5 chr1 150242956 150243248 + 4.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -6990 NM_030920 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 812 chr1 89072306 89072700 + 4.5 NA Intergenic L1PA8|LINE|L1 -7295 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 878 chr10 59670192 59670734 + 4.5 NA intron (NM_194298, intron 3 of 5) MIR|SINE|MIR 39428 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 423-4 chr13 25532232 25532366 + 4.5 NA exon (NM_001313741, exon 5 of 36) exon (NM_001313741, exon 5 of 36) 63525 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 609.5-5 chr7 40415380 40415572 + 4.5 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 280500 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 493.5-4 chr11 4433719 4433925 + 4.5 NA Intergenic Intergenic -15473 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 665-5 chr15 69668107 69668456 + 4.5 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 76081 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 508.5-3 chr12 4454033 4454257 + 4.5 NA Intergenic L1MC1|LINE|L1 -8531 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 956-3 chr15 58629915 58630301 + 4.5 NA intron (NM_001320570, intron 8 of 14) intron (NM_001320570, intron 8 of 14) 63499 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 656.5-6 chr6 56230165 56230336 + 4.5 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 17330 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 775 chr11 81356516 81356689 + 4.5 NA Intergenic Intergenic 534234 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 809-2 chr15 50907643 50907909 + 4.5 NA promoter-TSS (NM_007347) promoter-TSS (NM_007347) -907 NM_007347 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 527.5-5 chr15 96147202 96147364 + 4.5 NA intron (NR_125738, intron 3 of 4) MIR3|SINE|MIR -19442 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 526.5-13 chr21 14990494 14990653 + 4.5 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) -71905 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 829.5-3 chr18 77414518 77414798 + 4.5 NA Intergenic Intergenic 164810 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 609-7 chr2 119148517 119148718 + 4.5 NA Intergenic MIRb|SINE|MIR 10134 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 629-7 chr18 65904952 65905091 + 4.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 154009 NM_001317214 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 471-8 chr10 118306874 118307008 + 4.5 NA 3' UTR (NM_001134672, exon 8 of 8) 3' UTR (NM_001134672, exon 8 of 8) 35383 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 463.5-5 chr12 83319504 83319719 + 4.5 NA Intergenic Intergenic 632456 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 660-16 chr7 18302833 18303054 + 4.5 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 12851 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 754-5 chr3 107994720 107995023 + 4.5 NA Intergenic Intergenic 96217 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 305-40 chr5 114101233 114101330 + 4.5 NA Intergenic Intergenic -260789 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 905-2 chr3 193817136 193817557 + 4.5 NA Intergenic Intergenic 26663 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 741.5 chr15 34198472 34198748 + 4.5 NA intron (NM_024713, intron 1 of 9) intron (NM_024713, intron 1 of 9) 11486 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 697.5-10 chr8 130170885 130171175 + 4.5 NA intron (NM_001362925, intron 9 of 29) intron (NM_001362925, intron 9 of 29) -86262 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 580-18 chr7 132855096 132855341 + 4.5 NA intron (NR_133671, intron 6 of 10) intron (NR_133671, intron 6 of 10) 96248 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 471-27 chr6 25139517 25139667 + 4.5 NA Intergenic Intergenic -1200 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 736.5-5 chr2 70072999 70073329 + 4.5 NA intron (NR_033872, intron 4 of 10) L3|LINE|CR1 13851 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 764-6 chr3 30205109 30205561 + 4.5 NA Intergenic Intergenic -271179 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 455-31 chr7 28178696 28178821 + 4.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -1699 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 575.5-6 chr3 128225410 128225651 + 4.5 NA intron (NM_021937, intron 1 of 6) MIRb|SINE|MIR -71616 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 653.5-4 chr16 23201033 23201273 + 4.5 NA intron (NM_001039, intron 6 of 12) intron (NM_001039, intron 6 of 12) 18408 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 1396.5 chr19 46976319 46976683 + 4.5 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) -43336 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 547.5 chr1 201061051 201061292 + 4.5 NA intron (NM_000069, intron 25 of 43) intron (NM_000069, intron 25 of 43) -37457 NM_001252100 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 592-9 chr2 66269540 66269693 + 4.5 NA Intergenic Intergenic 88712 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 513-24 chr4 163564677 163564830 + 4.5 NA intron (NM_017923, intron 2 of 3) intron (NM_017923, intron 2 of 3) 48781 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 640.5-5 chr16 77054070 77054294 + 4.5 NA Intergenic Intergenic -137008 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 787-3 chr20 59890825 59891208 + 4.5 NA intron (NM_014258, intron 24 of 44) intron (NM_014258, intron 24 of 44) 42621 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 537.5-16 chr8 83601471 83601664 + 4.5 NA Intergenic L1MA3|LINE|L1 197809 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 727-8 chr4 14558793 14559063 + 4.5 NA intron (NR_126435, intron 5 of 6) intron (NR_126435, intron 5 of 6) 329241 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 411-25 chr3 39066026 39066194 + 4.5 NA intron (NM_001303403, intron 3 of 18) L1ME3A|LINE|L1 13818 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 659.5-3 chr16 63295848 63296043 + 4.5 NA Intergenic Intergenic -1259507 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 908-5 chr8 110110562 110110810 + 4.5 NA Intergenic Intergenic -134915 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 680.5-2 chr14 52061703 52062011 + 4.5 NA intron (NM_007361, intron 2 of 21) intron (NM_007361, intron 2 of 21) 7202 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1220-2 chr4 33380178 33380572 + 4.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 659518 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 668.5-7 chr7 107597684 107597876 + 4.5 NA intron (NR_163936, intron 5 of 6) intron (NR_163936, intron 5 of 6) 17534 NR_163928 755-6 chr5 88065239 88065681 + 4.5 NA Intergenic L1MA4A|LINE|L1 203385 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 789-2 chr2 64752164 64752430 + 4.5 NA Intergenic Intergenic -98384 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 400.5-32 chr9 92932014 92932202 + 4.5 NA Intergenic L1MEd|LINE|L1 -15415 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 942-4 chr6 122147072 122147502 + 4.5 NA Intergenic Intergenic -252264 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 777-10 chrX 49767757 49768095 + 4.5 NA Intergenic Intergenic -61334 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 971.5-2 chr16 24962038 24962365 + 4.5 NA intron (NM_001006634, intron 7 of 19) L1MEd|LINE|L1 53168 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 591-7 chr2 114812120 114812272 + 4.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 21352 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 740.5-4 chr16 76697762 76698077 + 4.5 NA Intergenic L1MD|LINE|L1 62921 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 558.5-15 chr8 18220849 18221090 + 4.5 NA promoter-TSS (NM_001160174) promoter-TSS (NM_001160174) -699 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 766.5-2 chr1 240000773 240000949 + 4.5 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -6663 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 1016-2 chr4 175837044 175837321 + 4.5 NA intron (NR_048571, intron 1 of 5) MLT1D|LTR|ERVL-MaLR -24068 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 744-2 chr1 167729524 167729898 + 4.5 NA intron (NM_024569, intron 1 of 4) intron (NM_024569, intron 1 of 4) 7729 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 861.5 chr5 147097092 147097510 + 4.5 NA Intergenic Intergenic -15781 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 459-6 chr11 110317463 110317632 + 4.5 NA Intergenic Intergenic -20835 NM_001260493 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 1075.5 chr4 83902889 83903166 + 4.5 NA Intergenic HAL1M8|LINE|L1 366919 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 480-6 chr13 101631123 101631377 + 4.5 NA intron (NM_001271754, intron 6 of 10) intron (NM_001271754, intron 6 of 10) 141298 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 951-3 chr7 82707140 82707498 + 4.5 NA Intergenic Intergenic -263363 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 555-28 chr7 13434495 13434650 + 4.5 NA Intergenic Intergenic 551942 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 861-2 chr5 18623507 18623727 + 4.5 NA Intergenic Intergenic 816343 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 792-3 chr7 77295346 77295653 + 4.5 NA TTS (NM_020879) TTS (NM_020879) -95680 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 474.5 chr1 35988245 35988435 + 4.5 NA intron (NM_024852, intron 5 of 18) L1MA9|LINE|L1 57235 NM_177422 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 682.5-9 chr5 100123652 100123885 + 4.5 NA Intergenic Intergenic 264486 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 862.5 chr16 52756872 52757287 + 4.5 NA Intergenic Intergenic -150104 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 639-14 chr7 135194835 135195043 + 4.5 NA exon (NM_001362736, exon 9 of 16) exon (NM_001362736, exon 9 of 16) 12139 NR_106764 102465254 NR_106764 ENSG00000277138 MIR6509 hsa-mir-6509 microRNA 6509 ncRNA 631-5 chr15 69454675 69454943 + 4.5 NA intron (NM_001003, intron 2 of 3) intron (NM_001003, intron 2 of 3) 1991 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 650.5-9 chr2 153261642 153261821 + 4.5 NA Intergenic L1M1|LINE|L1 217031 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 501.5-13 chr2 55976690 55976902 + 4.5 NA intron (NR_126406, intron 2 of 2) LTR103_Mam|LTR|ERV1? 6280 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 1135.5-2 chr20 53037148 53037508 + 4.5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 64970 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 567-10 chr2 35263606 35263785 + 4.5 NA Intergenic L1ME2|LINE|L1 -207710 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 769.5-7 chr22 19541727 19541968 + 4.5 NA Intergenic L1MB3|LINE|L1 -16510 NM_003277 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 635-11 chr5 104775157 104775339 + 4.5 NA Intergenic LTR1D1|LTR|ERV1 -324226 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 549.5-13 chr8 117480270 117480495 + 4.5 NA Intergenic Intergenic -40331 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 494.5-17 chr8 106160988 106161152 + 4.5 NA Intergenic L2c|LINE|L2 -100567 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 707-3 chr10 103427703 103427895 + 4.5 NA intron (NM_014976, intron 21 of 35) intron (NM_014976, intron 21 of 35) 24571 NR_046344 51063 Hs.241545 NM_015916 ENSG00000138172 CALHM2 FAM26B calcium homeostasis modulator family member 2 protein-coding 887.5 chr1 116175549 116175918 + 4.5 NA Intergenic L2a|LINE|L2 63978 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 711-7 chr9 83559702 83559895 + 4.5 NA Intergenic Charlie17|DNA|hAT-Charlie -21397 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 732.5-4 chr14 63465662 63465911 + 4.5 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 42452 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 641-13 chr8 84827444 84827758 + 4.5 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 121674 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 876.5-2 chr7 92316928 92317248 + 4.5 NA intron (NM_019004, intron 3 of 19) intron (NM_019004, intron 3 of 19) -70988 NM_001350689 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 486-14 chr14 86136346 86136509 + 4.5 NA Intergenic L1MA4|LINE|L1 201749 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 571-5 chr14 64500059 64500310 + 4.5 NA 5' UTR (NM_001354684, exon 1 of 4) 5' UTR (NM_001354684, exon 1 of 4) 269 NM_001354683 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 1135.5 chr2 181695098 181695479 + 4.5 NA Intergenic Tigger6b|DNA|TcMar-Tigger -14623 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 702-8 chr8 86127314 86127548 + 4.5 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 28521 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 672-2 chr11 38370211 38370503 + 4.5 NA Intergenic L1ME2|LINE|L1 275999 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 539.5-11 chr15 95848431 95848751 + 4.5 NA Intergenic L1MA8|LINE|L1 279250 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 580-11 chr2 206202048 206202320 + 4.5 NA intron (NM_001098199, intron 2 of 2) intron (NM_001098199, intron 2 of 2) -1192 NR_104359 101669764 Hs.574781 NR_104359 GPR1-AS GPR1-AS1|GPR1AS GPR1 antisense RNA ncRNA 649.5-3 chr10 3780512 3780791 + 4.5 NA intron (NR_027653, intron 2 of 3) intron (NR_027653, intron 2 of 3) 4558 NM_001160124 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 567-12 chr2 201811785 201811970 + 4.5 NA intron (NM_001366386, intron 3 of 13) L2|LINE|L2 5298 NM_001261436 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 819.5-2 chr2 103247672 103248147 + 4.5 NA Intergenic LTR40a|LTR|ERVL -263480 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 839.5 chr2 148894721 148894932 + 4.5 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) 19599 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 898.5-3 chr3 74330974 74331227 + 4.5 NA intron (NM_020872, intron 12 of 21) Tigger3b|DNA|TcMar-Tigger 190040 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 1028-2 chr4 31146207 31146656 + 4.5 NA 3' UTR (NM_001173523, exon 3 of 3) 3' UTR (NM_001173523, exon 3 of 3) -24713 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 674-5 chr4 37031580 37031872 + 4.5 NA Intergenic Intergenic 29947 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 734-2 chr12 117505947 117506170 + 4.5 NA intron (NM_173598, intron 14 of 19) L2c|LINE|L2 -144256 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 891.5 chr15 88445959 88446335 + 4.5 NA Intergenic L1ME2|LINE|L1 21241 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 686.5-3 chr14 45009922 45010189 + 4.5 NA intron (NM_001308120, intron 6 of 19) intron (NM_001308120, intron 6 of 19) 47865 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 827-6 chr8 118382122 118382463 + 4.5 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -238709 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 664-5 chr3 111374956 111375242 + 4.5 NA Intergenic L1PB1|LINE|L1 -167098 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 561.5-6 chr18 12858905 12859083 + 4.5 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) -18032 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 571-12 chr22 27863927 27864074 + 4.5 NA intron (NM_001284278, intron 8 of 11) intron (NM_001284278, intron 8 of 11) 55214 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 1190.5 chr14 57464149 57464665 + 4.5 NA Intergenic Intergenic 29450 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 554.5-3 chr1 44573663 44573821 + 4.5 NA intron (NM_001319957, intron 1 of 13) L2b|LINE|L2 28249 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 758-4 chr17_KI270729v1_random 3778 4222 + 4.5 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 671.5-7 chr8 119689636 119689949 + 4.5 NA Intergenic MIRb|SINE|MIR -16402 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 1056 chr1 102694549 102694868 + 4.5 NA Intergenic Intergenic 413788 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 676-2 chr5 27053552 27053888 + 4.5 NA Intergenic MER5B|DNA|hAT-Charlie -15134 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 990.5 chr3 25519384 25519658 + 4.5 NA intron (NR_110892, intron 3 of 6) L1ME2|LINE|L1 61211 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 985.5 chr2 104381338 104381621 + 4.5 NA intron (NR_037885, intron 2 of 2) intron (NR_037885, intron 2 of 2) 26853 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 626.5-9 chr8 111636825 111636977 + 4.5 NA Intergenic Intergenic 260262 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 657.5 chr10 28260045 28260323 + 4.5 NA intron (NM_173496, intron 2 of 18) intron (NM_173496, intron 2 of 18) 21939 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 743-2 chr10 128889958 128890226 + 4.5 NA Intergenic L1M5|LINE|L1 -22741 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 816-2 chr10 14489295 14489631 + 4.5 NA Intergenic MER49|LTR|ERV1 43251 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 952.5-5 chr7 46382834 46383143 + 4.5 NA Intergenic L1MCa|LINE|L1 314134 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 742.5-3 chr15 95424357 95424564 + 4.5 NA Intergenic L1ME2|LINE|L1 -8633 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 963-2 chr12 76955068 76955411 + 4.5 NA Intergenic AluYb8|SINE|Alu -76220 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 723-6 chr20 13348890 13349111 + 4.5 NA Intergenic Intergenic -109313 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 441-32 chr5 125779187 125779366 + 4.5 NA Intergenic Intergenic 286015 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 558.5-9 chr15 45697802 45698078 + 4.5 NA Intergenic AluSz|SINE|Alu -7255 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 819.5-3 chr7 39226060 39226315 + 4.5 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 102947 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 576-18 chr8 81253604 81253795 + 4.5 NA Intergenic MER5A|DNA|hAT-Charlie -26837 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 395.5-34 chrX 99004118 99004205 + 4.5 NA Intergenic Intergenic 1406112 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 1384 chr1 100696712 100697111 + 4.5 NA Intergenic L1M1|LINE|L1 -22729 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 777-9 chr9 117380108 117380337 + 4.5 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 34835 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 739-7 chr5 19315827 19316009 + 4.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 570354 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 441-17 chr19 38998435 38998630 + 4.5 NA Intergenic AluSx1|SINE|Alu -22790 NR_104026 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 460.5-15 chr2 67776592 67776729 + 4.5 NA Intergenic Intergenic 48902 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 762-3 chr15 57280846 57281097 + 4.5 NA intron (NM_207038, intron 18 of 19) intron (NM_207038, intron 18 of 19) -2314 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 655.5-13 chr8 102383887 102384070 + 4.5 NA intron (NM_001282873, intron 1 of 58) HAL1|LINE|L1 28711 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 806-8 chrX 87505612 87506110 + 4.5 NA Intergenic L1MEf|LINE|L1 -11941 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 804-8 chr5 102585228 102585531 + 4.5 NA intron (NR_047462, intron 1 of 1) intron (NR_047462, intron 1 of 1) 4011 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 490.5-9 chr2 163981987 163982143 + 4.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -246057 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 838.5-7 chr6 12826745 12826940 + 4.5 NA intron (NM_001322308, intron 3 of 13) L4_A_Mam|LINE|RTE-X 108143 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 689-12 chr3 71553637 71553805 + 4.5 NA intron (NR_146142, intron 2 of 19) BLACKJACK|DNA|hAT-Blackjack -10164 NM_001244816 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 592.5-15 chr6 123384033 123384517 + 4.5 NA intron (NM_001251987, intron 14 of 20) intron (NM_001251987, intron 14 of 20) -55329 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 697.5-6 chr20 22812431 22812713 + 4.5 NA Intergenic Intergenic -127228 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 611.5-9 chr6 124212445 124212710 + 4.5 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -70428 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 960.5 chr11 17171219 17171521 + 4.5 NA intron (NM_002645, intron 1 of 32) intron (NM_002645, intron 1 of 32) 36616 NM_001321378 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 631.5-5 chr4 73426259 73426577 + 4.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 -9803 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 591 chr1 21211680 21211853 + 4.5 NA Intergenic Tigger5b|DNA|TcMar-Tigger -34869 NM_001198802 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 496.5-10 chr20 34624518 34624670 + 4.5 NA intron (NM_080476, intron 6 of 11) intron (NM_080476, intron 6 of 11) 52691 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 610-4 chr12 55418466 55418641 + 4.5 NA Intergenic L1PA14|LINE|L1 -7701 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 683.5-4 chr2 219843681 219843891 + 4.5 NA Intergenic L1ME3G|LINE|L1 61103 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 916.5 chr16 8640131 8640488 + 4.5 NA intron (NR_134608, intron 5 of 9) L2c|LINE|L2 18611 NM_024109 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 586.5-14 chr7 80854986 80855146 + 4.5 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 63985 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 639-11 chr21 27464492 27464665 + 4.5 NA Intergenic MIRb|SINE|MIR -257801 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 928.5-3 chr7 8043455 8043821 + 4.5 NA intron (NM_138426, intron 3 of 7) L1ME1|LINE|L1 74842 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 438-16 chr2 25606631 25606755 + 4.5 NA intron (NM_001351393, intron 4 of 17) intron (NM_001351393, intron 4 of 17) 43529 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 570-5 chr12 45056072 45056208 + 4.5 NA Intergenic L1PB1|LINE|L1 -5041 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 458.5-9 chr18 4919323 4919463 + 4.5 NA Intergenic L1MB3|LINE|L1 -161789 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 854.5 chr10 54133210 54133525 + 4.5 NA intron (NM_001354411, intron 15 of 34) intron (NM_001354411, intron 15 of 34) -352863 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 989 chr11 38106273 38106597 + 4.5 NA Intergenic Intergenic 167834 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 526-6 chr2 81372531 81372674 + 4.5 NA Intergenic Intergenic 94344 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1030.5 chr17 64213257 64213736 + 4.5 NA exon (NM_001288733, exon 2 of 12) exon (NM_001288733, exon 2 of 12) 17238 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 952.5-4 chr21 28726593 28727009 + 4.5 NA Intergenic AluSz6|SINE|Alu 158566 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 1073 chr1 76082958 76083286 + 4.5 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 8376 NM_001349105 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 416.5-14 chr2 52610911 52611072 + 4.5 NA Intergenic MIRb|SINE|MIR 91624 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 753 chr1 218413024 218413211 + 4.5 NA intron (NR_138148, intron 2 of 6) AluSz|SINE|Alu -24516 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 813.5-4 chr17 57489754 57489968 + 4.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 33736 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 1147.5-2 chr3 182929965 182930513 + 4.5 NA Intergenic L1MB2|LINE|L1 50299 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 972.5 chr8 88642773 88643011 + 4.5 NA Intergenic Intergenic -315409 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1051.5-3 chr3 12832687 12833144 + 4.5 NA intron (NM_001162499, intron 14 of 14) MER46C|DNA|TcMar-Tigger 7535 NM_001007074 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 459.5-10 chr18 50123382 50123572 + 4.5 NA intron (NM_001080467, intron 1 of 39) AluJr|SINE|Alu 3086 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 943-7 chr9 37899118 37899355 + 4.5 NA intron (NM_033412, intron 2 of 2) L1M5|LINE|L1 4891 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 810.5-4 chr4 146767655 146768001 + 4.5 NA intron (NR_133922, intron 12 of 13) intron (NR_133922, intron 12 of 13) 128935 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 1353 chr11 31672233 31672555 + 4.5 NA intron (NM_019040, intron 9 of 9) intron (NM_019040, intron 9 of 9) 128267 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 362-13 chr16 89418608 89418745 + 4.5 NA intron (NR_045839, intron 1 of 9) intron (NR_045839, intron 1 of 9) -12242 NR_110931 101927817 Hs.667942 NR_110931 LOC101927817 - uncharacterized LOC101927817 ncRNA 1167-3 chr5 131024500 131024847 + 4.5 NA Intergenic Intergenic 140583 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 641.5-7 chr5 32163602 32163810 + 4.5 NA intron (NM_022130, intron 1 of 3) intron (NM_022130, intron 1 of 3) 10613 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 1153.5 chr8 92645264 92645570 + 4.5 NA intron (NR_125827, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 10077 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 412.5-5 chr11 133278386 133278510 + 4.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 254053 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 528-25 chr3 74638693 74638863 + 4.5 NA Intergenic Intergenic -117638 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 646.5-11 chr3 191932757 191933116 + 4.5 NA Intergenic Intergenic -305694 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 1238.5 chr2 63038122 63038631 + 4.5 NA intron (NM_001142615, intron 20 of 22) intron (NM_001142615, intron 20 of 22) 9335 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 627-6 chr19 15454539 15454746 + 4.5 NA TTS (NM_001348027) TTS (NM_001348027) -4686 NM_021241 58525 Hs.442138 NM_021241 ENSG00000011451 WIZ ZNF803 WIZ zinc finger protein-coding 650-14 chr7 49950536 49950780 + 4.5 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 142588 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 595-5 chr14 63806565 63806724 + 4.5 NA Intergenic L1PREC2|LINE|L1 -46321 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 866.5-2 chr18 7843447 7843703 + 4.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 276259 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 513.5 chr1 46725377 46725531 + 4.5 NA Intergenic Intergenic -6340 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 779 chr12 81778240 81778461 + 4.5 NA Intergenic Intergenic -19000 NM_003625 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 799.5-3 chr11 21667272 21667698 + 4.5 NA Intergenic Intergenic -525600 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 967.5-3 chr8 134264932 134265395 + 4.5 NA Intergenic L1ME3F|LINE|L1 -332908 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 886.5 chr12 24366417 24366702 + 4.5 NA intron (NM_152989, intron 3 of 17) MLT1K|LTR|ERVL-MaLR 143288 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 529.5-19 chr6 24239213 24239358 + 4.5 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) 113070 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 1022.5-2 chr15 26578093 26578451 + 4.5 NA intron (NM_001191320, intron 4 of 6) intron (NM_001191320, intron 4 of 6) 50818 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 786.5-4 chr8 34381705 34381941 + 4.5 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -402098 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 643.5-10 chr3 55838234 55838406 + 4.5 NA intron (NR_132749, intron 13 of 17) L1MEf|LINE|L1 14274 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 801.5-2 chr3 80652265 80652515 + 4.5 NA Intergenic Intergenic -112507 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 776.5-4 chr4 88193359 88193681 + 4.5 NA intron (NM_001257386, intron 1 of 15) Charlie15b|DNA|hAT-Charlie -34197 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 612.5-11 chr3 132625725 132625949 + 4.5 NA intron (NR_037804, intron 34 of 44) MIR3|SINE|MIR 25700 NM_178445 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 837-3 chr14 78764576 78764986 + 4.5 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 361062 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 898.5-4 chr4 12824587 12824859 + 4.5 NA Intergenic Intergenic 601272 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 1023.5 chr5 175527313 175527778 + 4.5 NA 3' UTR (NM_022754, exon 11 of 11) 3' UTR (NM_022754, exon 11 of 11) 48985 NM_001322983 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 660-17 chr7 35432591 35432821 + 4.5 NA Intergenic L1P4d|LINE|L1 118851 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 607-16 chr18 62199377 62199574 + 4.5 NA intron (NR_144409, intron 1 of 31) L2a|LINE|L2 12220 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 759.5 chr10 70863696 70863975 + 4.5 NA intron (NM_003901, intron 7 of 14) L1MEd|LINE|L1 24046 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 747-4 chr5 133243473 133243786 + 4.5 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 184077 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 426.5-24 chr6 123839856 123840023 + 4.5 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 36074 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 805-2 chr2 103874393 103874706 + 4.5 NA Intergenic Intergenic 533783 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 570-22 chr7 5440750 5440912 + 4.5 NA Intergenic L1MB5|LINE|L1 -11904 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 483-14 chr2 28514430 28514559 + 4.5 NA intron (NM_001170585, intron 1 of 56) MER58B|DNA|hAT-Charlie 18423 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 534-29 chr9 122683934 122684230 + 4.5 NA Intergenic L1M2|LINE|L1 8952 NM_001005234 26735 Hs.626839 NM_001005234 ENSG00000171481 OR1L3 OR9-28|OR9-D olfactory receptor family 1 subfamily L member 3 protein-coding 1010.5 chr11 14728741 14729133 + 4.5 NA intron (NM_000922, intron 1 of 15) L5|LINE|RTE-X 85133 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 587.5-18 chr5 63138786 63139022 + 4.5 NA Intergenic L1MCb|LINE|L1 560085 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 706-2 chr10 113379481 113379783 + 4.5 NA Intergenic Intergenic -171199 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 423-22 chr2 206548106 206548240 + 4.5 NA intron (NM_003812, intron 7 of 25) intron (NM_003812, intron 7 of 25) -96054 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 728-4 chr2 53038703 53038927 + 4.5 NA Intergenic Intergenic -336200 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 547.5-11 chr5 145777078 145777287 + 4.5 NA intron (NM_205846, intron 5 of 6) intron (NM_205846, intron 5 of 6) 58160 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 1363.5 chr4 39755000 39755549 + 4.5 NA intron (NM_001312646, intron 3 of 4) intron (NM_001312646, intron 3 of 4) 57138 NM_001111112 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 564-7 chr13 58156761 58156995 + 4.5 NA Intergenic Intergenic -8949 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 754-7 chr6 37335753 37336043 + 4.5 NA Intergenic AluSx1|SINE|Alu -18085 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 557.5 chr11 74763523 74763709 + 4.5 NA intron (NM_001098638, intron 1 of 5) L1ME3C|LINE|L1 14767 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 1073-2 chr5 64361515 64361997 + 4.5 NA intron (NM_001113561, intron 7 of 7) intron (NM_001113561, intron 7 of 7) -144259 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 391.5-41 chr8 106486519 106486679 + 4.5 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 38675 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 748-10 chr5 155841274 155841629 + 4.5 NA Intergenic L1MC5|LINE|L1 -485306 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 787-6 chr5 82813767 82814012 + 4.5 NA Intergenic Intergenic -26266 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 810-3 chr8 25484324 25484591 + 4.5 NA intron (NM_001317906, intron 9 of 13) L1M5|LINE|L1 25224 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 581.5-5 chr12 108113912 108114088 + 4.5 NA Intergenic MIR|SINE|MIR -15288 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 664.5-9 chr5 42548634 42548874 + 4.5 NA promoter-TSS (NM_001242404) promoter-TSS (NM_001242404) 541 NM_001242403 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 1160-2 chr20 21492902 21493495 + 4.5 NA Intergenic Intergenic 20866 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 994.5 chr12 2731021 2731424 + 4.5 NA Intergenic L1MB3|LINE|L1 -40065 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 580-4 chr14 84947553 84947770 + 4.5 NA Intergenic L1ME4a|LINE|L1 -324271 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 832.5-3 chr2 25663526 25663841 + 4.5 NA intron (NM_033147, intron 1 of 19) Charlie7|DNA|hAT-Charlie 9894 NM_001320937 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 962-7 chrX 95666854 95667404 + 4.5 NA Intergenic L1PA10|LINE|L1 -603903 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 541-18 chr6 51048746 51048898 + 4.5 NA Intergenic Intergenic 229951 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 843-3 chr19 11399426 11399661 + 4.5 NA intron (NM_001035223, intron 16 of 18) AluJb|SINE|Alu -15229 NM_000121 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 522-23 chr3 100227531 100227692 + 4.5 NA Intergenic Intergenic -33381 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 440.5-12 chr19 28655576 28655730 + 4.5 NA intron (NR_110759, intron 5 of 9) L1M2|LINE|L1 48965 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 496-27 chr8 126278883 126279040 + 4.5 NA Intergenic Intergenic -46534 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 743-3 chr17 27988663 27988916 + 4.5 NA non-coding (NR_146896, exon 2 of 5) non-coding (NR_146896, exon 2 of 5) 2918 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 662-5 chr2 127709016 127709387 + 4.5 NA intron (NM_018383, intron 20 of 21) Charlie1a|DNA|hAT-Charlie 7704 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 853.5 chr12 75326547 75326804 + 4.5 NA intron (NM_001355027, intron 1 of 16) intron (NM_001355027, intron 1 of 16) 3649 NM_001355024 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 785-3 chr3 156872471 156872773 + 4.5 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 46269 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 536.5-6 chr11 30528723 30528863 + 4.5 NA intron (NM_001584, intron 2 of 5) MARNA|DNA|TcMar-Mariner 51700 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 574.5-8 chr2 21778575 21778753 + 4.5 NA Intergenic Intergenic -68012 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 838-3 chr12 80920933 80921372 + 4.5 NA intron (NM_004664, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR 14681 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 694.5-5 chr6 146315416 146315613 + 4.5 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -228319 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 1083 chr13 44772489 44772908 + 4.5 NA Intergenic AluJb|SINE|Alu 36932 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 692-5 chr14 47991935 47992138 + 4.5 NA Intergenic Intergenic -197022 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 465-34 chr8 31314285 31314455 + 4.5 NA Intergenic L2a|LINE|L2 -281014 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 1046.5 chr3 97203391 97203927 + 4.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -235948 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 689-10 chr2 217976276 217976472 + 4.5 NA Intergenic Intergenic -2333 NR_135524 105373878 Hs.630709 NR_135524 ENSG00000223923 LOC105373878 - uncharacterized LOC105373878 ncRNA 929.5 chr10 51904995 51905371 + 4.5 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -205588 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 643.5-15 chr8 125469982 125470187 + 4.5 NA Intergenic AluSz|SINE|Alu 37875 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 1123 chr1 21287453 21287851 + 4.5 NA intron (NM_001113348, intron 2 of 18) intron (NM_001113348, intron 2 of 18) 2563 NM_001113349 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 716 chr11 44495652 44495954 + 4.5 NA Intergenic MIRb|SINE|MIR -69860 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 969.5-3 chr8 82409039 82409451 + 4.5 NA Intergenic Intergenic -502859 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 711-3 chr4 87518719 87518967 + 4.5 NA intron (NM_001128310, intron 1 of 11) MamGypsy2-LTR|LTR|Gypsy 10660 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 634.5-17 chr8 56095845 56096170 + 4.5 NA Intergenic HAL1|LINE|L1 17975 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 883.5-4 chr6 140347220 140347608 + 4.5 NA Intergenic Intergenic 142162 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 671.5-4 chr3 197259165 197259405 + 4.5 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) 34663 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 829.5-2 chr14 68249641 68250156 + 4.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 378889 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 899 chr4 116911526 116911755 + 4.5 NA Intergenic Intergenic 173936 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 455.5-20 chr6 87050106 87050234 + 4.5 NA Intergenic Intergenic 44936 NM_001252383 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 583.5-10 chr3 89376370 89376611 + 4.5 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 268869 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1043.5-2 chr8 118636607 118637094 + 4.5 NA intron (NR_038210, intron 2 of 4) Charlie26a|DNA|hAT-Charlie -14887 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 397.5-5 chr10 86518078 86518180 + 4.5 NA intron (NM_001318328, intron 1 of 18) intron (NM_001318328, intron 1 of 18) 3655 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 694.5-6 chr7 17460403 17460602 + 4.5 NA intron (NR_110015, intron 2 of 2) LTR9B|LTR|ERV1 85585 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 888-4 chr4 63394376 63394638 + 4.5 NA Intergenic Intergenic 1014943 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 640.5-2 chr1 163781996 163782289 + 4.5 NA Intergenic L1MC2|LINE|L1 -358951 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 571.5-13 chr9 100088288 100088503 + 4.5 NA intron (NM_015051, intron 1 of 11) L2a|LINE|L2 10605 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 1483 chr3 119841643 119842132 + 4.5 NA intron (NM_001354596, intron 9 of 9) intron (NM_001354596, intron 9 of 9) 59177 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 422-16 chr2 148459802 148459978 + 4.5 NA intron (NM_018328, intron 6 of 14) intron (NM_018328, intron 6 of 14) -184861 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 1238 chr11 114038947 114039299 + 4.5 NA Intergenic Intergenic -20588 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 652-5 chr17 62039055 62039404 + 4.5 NA intron (NM_005121, intron 3 of 29) intron (NM_005121, intron 3 of 29) 26049 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 649-6 chr17 76094052 76094276 + 4.5 NA intron (NM_001282313, intron 5 of 18) intron (NM_001282313, intron 5 of 18) 3912 NR_106928 102466753 NR_106928 ENSG00000275360 MIR6868 hsa-mir-6868 microRNA 6868 ncRNA 934.5 chr12 14527776 14528138 + 4.5 NA intron (NM_024829, intron 6 of 10) L1M4a1|LINE|L1 -39775 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 879-2 chr2 61031900 61032135 + 4.5 NA exon (NM_002618, exon 2 of 4) exon (NM_002618, exon 2 of 4) -13758 NM_001322127 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 669-7 chr14 36285885 36286099 + 4.5 NA Intergenic Intergenic 34645 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 701.5-4 chr8 118442479 118442720 + 4.5 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -178402 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 669-11 chr2 102079261 102079432 + 4.5 NA intron (NM_001320978, intron 1 of 11) L1MB7|LINE|L1 8956 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 315-24 chr3 143114563 143114721 + 4.5 NA Intergenic Intergenic -5129 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 534-22 chr3 71040899 71041054 + 4.5 NA intron (NR_146142, intron 11 of 19) intron (NR_146142, intron 11 of 19) 23948 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 817.5-2 chr4 47412346 47412719 + 4.5 NA intron (NM_000812, intron 8 of 8) intron (NM_000812, intron 8 of 8) 51170 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 902-4 chr9 27205864 27206263 + 4.5 NA intron (NM_001290077, intron 13 of 21) intron (NM_001290077, intron 13 of 21) 76730 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 634.5 chr10 95857389 95857690 + 4.5 NA intron (NM_001098175, intron 7 of 9) intron (NM_001098175, intron 7 of 9) -50426 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 528-36 chrX 25835019 25835180 + 4.5 NA Intergenic Intergenic -303244 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 920.5 chr4 109172423 109172683 + 4.5 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 130105 NM_001256074 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 1379 chr2 33932199 33932730 + 4.5 NA intron (NR_126403, intron 3 of 5) intron (NR_126403, intron 3 of 5) -134762 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 1130 chr1 102441004 102441333 + 4.5 NA Intergenic L1M4|LINE|L1 -443934 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 1105.5 chr14 52634296 52634761 + 4.5 NA intron (NM_001353361, intron 7 of 7) MIRb|SINE|MIR 61030 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 526-3 chr15 76139002 76139192 + 4.5 NA intron (NM_152335, intron 3 of 10) intron (NM_152335, intron 3 of 10) 42389 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 769.5-3 chr11 80825082 80825362 + 4.5 NA Intergenic L1M5|LINE|L1 -62419 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 837.5-2 chr18 1881041 1881258 + 4.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -521520 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1074.5 chr12 108630567 108630975 + 4.5 NA intron (NM_003006, intron 1 of 1) L2b|LINE|L2 1310 NM_001206609 6404 Hs.591014 NM_003006 ENSG00000110876 SELPLG CD162|CLA|PSGL-1|PSGL1 selectin P ligand protein-coding 569.5-16 chr7 48753620 48753815 + 4.5 NA Intergenic Intergenic -170830 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1224 chr14 81654600 81655128 + 4.5 NA Intergenic Intergenic -31803 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 559.5-3 chr12 17517192 17517366 + 4.5 NA Intergenic Intergenic 71799 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 837-4 chr2 42270641 42270869 + 4.5 NA intron (NM_001145076, intron 5 of 21) intron (NM_001145076, intron 5 of 21) 89283 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 612-3 chr10 53387830 53388061 + 4.5 NA Intergenic Intergenic -616245 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 461-12 chr2 70344769 70344970 + 4.5 NA Intergenic LTR85a|LTR|Gypsy? -42802 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 726.5-5 chr8 113406317 113406614 + 4.5 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -29313 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 626.5 chr14 87924348 87924604 + 4.5 NA Intergenic Intergenic 68706 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 486-43 chr8 144885374 144885564 + 4.5 NA intron (NM_001363105, intron 4 of 4) intron (NM_001363105, intron 4 of 4) 14836 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 884.5 chr2 177690464 177690826 + 4.5 NA intron (NM_001077197, intron 16 of 20) intron (NM_001077197, intron 16 of 20) 17323 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 911 chr1 234085453 234085682 + 4.5 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -128644 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 816.5 chr6 162251823 162252058 + 4.5 NA intron (NM_004562, intron 3 of 11) L1ME4a|LINE|L1 -475192 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 419.5-22 chrX 66704856 66705103 + 4.5 NA Intergenic L1MA5|LINE|L1 -65681 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 675-13 chr8 132557746 132557986 + 4.5 NA Intergenic L1M5|LINE|L1 3613 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 594.5-3 chr12 39217280 39217445 + 4.5 NA Intergenic HAL1|LINE|L1 225758 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 510-2 chr10 62140407 62140605 + 4.5 NA Intergenic AluJr|SINE|Alu 91149 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 836-2 chr11 63948034 63948368 + 4.5 NA intron (NM_024771, intron 3 of 7) MIR3|SINE|MIR 8870 NM_001300800 79829 Hs.523753 NM_024771 ENSG00000110583 NAA40 NAT11|NatD|PATT1|hNatD N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding 765.5-3 chr4 113345247 113345549 + 4.5 NA intron (NM_001354275, intron 34 of 43) L1MB4|LINE|L1 52559 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 677-11 chr4 48996587 48996868 + 4.5 NA intron (NM_001286791, intron 5 of 15) intron (NM_001286791, intron 5 of 15) 10085 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1169.5 chr14 67808014 67808524 + 4.5 NA intron (NM_015346, intron 4 of 41) intron (NM_015346, intron 4 of 41) 8321 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 1221 chr18 38704019 38704416 + 4.5 NA Intergenic Intergenic 917958 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 1099.5 chr14 29266600 29266937 + 4.5 NA Intergenic Intergenic -480981 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 939-4 chr2 199294101 199294504 + 4.5 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 163637 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 876-5 chr8 101544319 101544524 + 4.5 NA intron (NM_024915, intron 2 of 15) intron (NM_024915, intron 2 of 15) 51982 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 757.5 chr12 126651850 126652114 + 4.5 NA TTS (NR_110034) TTS (NR_110034) 38336 NR_110034 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 787.5 chr10 66727510 66727814 + 4.5 NA intron (NM_001127384, intron 9 of 17) Tigger12|DNA|TcMar-Tigger -198374 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 732-5 chr16 73328689 73328922 + 4.5 NA Intergenic Intergenic -58000 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 600.5-6 chr4 128725488 128725656 + 4.5 NA Intergenic Intergenic -84128 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 1028.5 chr11 91479398 91479823 + 4.5 NA Intergenic L1PA15|LINE|L1 -610408 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 352-7 chr15 58468202 58468371 + 4.5 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 30449 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 629.5 chr10 93946447 93946734 + 4.5 NA Intergenic Intergenic 15325 NR_002319 266971 Hs.149255 NR_002319 ENSG00000180764 PIPSL PIP5K1L1|PIP5K1P3|PSMD4P2|bA429H9.1 PIP5K1A and PSMD4 like (pseudogene) pseudo 969-4 chr7 44774283 44774621 + 4.5 NA Intergenic L1MA5A|LINE|L1 18264 NM_174929 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 644.5-4 chr2 105621687 105621854 + 4.5 NA Intergenic MER5A|DNA|hAT-Charlie -11211 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 868-3 chr3 136551980 136552371 + 4.5 NA intron (NM_005862, intron 5 of 33) intron (NM_005862, intron 5 of 33) 200203 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 536.5-18 chr7 107996374 107996604 + 4.5 NA intron (NM_002291, intron 4 of 33) intron (NM_002291, intron 4 of 33) 6672 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 579-19 chr5 55756941 55757206 + 4.5 NA intron (NM_024415, intron 3 of 21) intron (NM_024415, intron 3 of 21) -9812 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 839-8 chr8 126773425 126773764 + 4.5 NA Intergenic Intergenic -215116 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 721.5 chr1 231802095 231802419 + 4.5 NA intron (NM_001164544, intron 8 of 8) THE1D|LTR|ERVL-MaLR 16260 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 464-10 chr18 879013 879149 + 4.5 NA Intergenic ERVL-B4-int|LTR|ERVL -25790 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 1013-4 chr4 157943082 157943453 + 4.5 NA Intergenic Intergenic -227485 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 837-5 chr4 152609609 152609914 + 4.5 NA Intergenic Intergenic 70236 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 822.5-5 chr21 30437062 30437301 + 4.5 NA Intergenic Intergenic -3098 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 511.5-25 chr8 138099360 138099504 + 4.5 NA Intergenic Intergenic -15887 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 427.5-11 chr15 57487025 57487143 + 4.5 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -104820 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 803-7 chr17 64098336 64098634 + 4.5 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 31659 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 813-5 chr3 79305736 79306001 + 4.5 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -105859 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 735 chr12 3794309 3794635 + 4.5 NA Intergenic Intergenic -41363 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 931 chr14 64436438 64436795 + 4.5 NA intron (NM_005956, intron 16 of 27) intron (NM_005956, intron 16 of 27) -28883 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 1046-2 chr2 227269036 227269510 + 4.5 NA intron (NR_102371, intron 4 of 13) L1ME4a|LINE|L1 55891 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 511.5-21 chr7 81799740 81799872 + 4.5 NA Intergenic Intergenic -29759 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 610.5-14 chr6 136919680 136919884 + 4.5 NA Intergenic Intergenic -2519 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 735-3 chr14 67896163 67896428 + 4.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 72703 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1242 chrX 99453023 99453487 + 4.5 NA Intergenic Intergenic 957018 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 642-12 chr4 184262528 184262769 + 4.5 NA Intergenic L1ME4a|LINE|L1 -44775 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 621-20 chrX 72322919 72323121 + 4.5 NA Intergenic L1MB5|LINE|L1 -15863 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 342-10 chr13 46042842 46042990 + 4.5 NA intron (NM_001330566, intron 4 of 19) intron (NM_001330566, intron 4 of 19) 9830 NM_001330566 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 463-4 chr10 59226356 59226458 + 4.5 NA intron (NM_001143774, intron 1 of 4) MER76|LTR|ERVL 48940 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 395.5-8 chr14 78229706 78229858 + 4.5 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 59409 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 651.5-9 chr8 118011018 118011267 + 4.5 NA intron (NM_000127, intron 1 of 10) L2a|LINE|L2 -90229 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 616.5 chr1 96387469 96387659 + 4.5 NA Intergenic Intergenic -13439 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 756.5-6 chr8 78937183 78937508 + 4.5 NA Intergenic MLT2C1|LTR|ERVL 99816 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 577.5-18 chr9 29289768 29289925 + 4.5 NA Intergenic Intergenic -76245 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1113 chr2 76264644 76264992 + 4.5 NA Intergenic Intergenic -553903 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 679-4 chr13 25012912 25013176 + 4.5 NA Intergenic Intergenic -44575 NR_026730 646405 Hs.620592 NM_001126062 TPTE2P1 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudo 978-2 chr4 31252839 31253138 + 4.5 NA Intergenic LTR67B|LTR|ERVL 81844 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 689.5-8 chr8 125743937 125744202 + 4.5 NA Intergenic Intergenic 207128 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 607.5-9 chr2 44736582 44736837 + 4.5 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 202179 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 779-5 chr8 70573919 70574185 + 4.5 NA 3' UTR (NM_001317805, exon 11 of 11) 3' UTR (NM_001317805, exon 11 of 11) 33617 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 586-19 chr9 105211413 105211774 + 4.5 NA Intergenic MIR|SINE|MIR -33012 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 574-18 chr8 63892910 63893353 + 4.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 123701 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 869-5 chr5 17952582 17952853 + 4.5 NA Intergenic Charlie11|DNA|hAT-Charlie 145443 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 786 chr1 32036719 32037022 + 4.5 NA intron (NR_073498, intron 4 of 8) intron (NR_073498, intron 4 of 8) 23002 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 605.5-2 chr11 22983367 22983632 + 4.5 NA Intergenic Intergenic -123025 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 462.5-7 chr14 65460414 65460593 + 4.5 NA intron (NM_004480, intron 2 of 9) LTR40a|LTR|ERVL -10599 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 389.5-17 chr3 40653714 40653847 + 4.5 NA Intergenic Intergenic 128820 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 879.5 chr2 73477700 73477910 + 4.5 NA intron (NM_015120, intron 9 of 22) L1MB2|LINE|L1 20702 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 553.5-7 chr16 60563358 60563561 + 4.5 NA Intergenic Intergenic -203666 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 874-2 chr15 70093506 70093810 + 4.5 NA intron (NM_020908, intron 4 of 19) intron (NM_020908, intron 4 of 19) 1131 NM_001282982 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 756.5-3 chr22 40072308 40072620 + 4.5 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 27647 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 584.5 chr13 31471638 31471879 + 4.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -267768 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 1127 chr6 129939818 129940107 + 4.5 NA Intergenic L2c|LINE|L2 -78407 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 835 chr17 53459877 53460179 + 4.5 NA Intergenic L1M1|LINE|L1 -362899 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 339-32 chr7 7759673 7759802 + 4.5 NA intron (NM_001302350, intron 3 of 4) L2c|LINE|L2 -41130 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 606-9 chr5 166484701 166484935 + 4.5 NA Intergenic AluSz6|SINE|Alu 441552 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 1262 chr1 227197154 227197696 + 4.5 NA intron (NM_001366019, intron 4 of 36) intron (NM_001366019, intron 4 of 36) 121067 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 542.5-9 chr16 918246 918392 + 4.5 NA intron (NR_147885, intron 2 of 11) intron (NR_147885, intron 2 of 11) -2714 NR_110946 101929387 Hs.737087 NR_110945 ENSG00000260439 LMF1-AS1 LA16c-366D3.1 LMF1 antisense RNA 1 ncRNA 804-7 chr5 75171765 75172025 + 4.5 NA intron (NM_001164443, intron 10 of 24) L1MEf|LINE|L1 64983 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 807-11 chr6 68011030 68011273 + 4.5 NA Intergenic Intergenic -44200 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 534-19 chr22 26855098 26855270 + 4.5 NA Intergenic Intergenic -5027 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 1206 chr14 62125570 62125995 + 4.5 NA intron (NR_015358, intron 2 of 3) intron (NR_015358, intron 2 of 3) 8425 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 410.5-21 chr7 117190046 117190198 + 4.5 NA intron (NM_001369606, intron 12 of 16) intron (NM_001369606, intron 12 of 16) 7441 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 926-2 chr17 61171374 61171743 + 4.5 NA intron (NM_001330413, intron 23 of 25) L1MEc|LINE|L1 196146 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 837.5-3 chr18 31606094 31606409 + 4.5 NA Intergenic Intergenic 14484 NM_000371 7276 Hs.427202 NM_000371 ENSG00000118271 TTR ATTR|CTS|CTS1|HEL111|HsT2651|PALB|TBPA transthyretin protein-coding 965-2 chr17 72985658 72985895 + 4.5 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 106912 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 660.5-4 chr17 63852845 63853148 + 4.5 NA Intergenic AluJr|SINE|Alu -4020 NR_002947 146771 Hs.629177 NR_002947 ENSG00000240280 TCAM1P TCAM1 testicular cell adhesion molecule 1, pseudogene pseudo 360-7 chr1 226496320 226496418 + 4.5 NA Intergenic Intergenic -52395 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 282-23 chr7 132559851 132559916 + 4.5 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 16587 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 699-7 chr18 65762176 65762486 + 4.5 NA intron (NM_001362438, intron 1 of 11) intron (NM_001362438, intron 1 of 11) 11319 NM_001317214 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 1206.5 chr4 31279103 31279426 + 4.5 NA Intergenic L1MC4|LINE|L1 108120 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 957 chr12 72547677 72548029 + 4.5 NA intron (NM_013381, intron 7 of 18) LTR101_Mam|LTR|ERVL -274344 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 928.5-4 chr7 70525340 70525588 + 4.5 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -606680 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1114.5-2 chr16 65008124 65008495 + 4.5 NA intron (NM_001797, intron 2 of 12) intron (NM_001797, intron 2 of 12) 113754 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 613-2 chr10 41883740 41883923 + 4.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 484214 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 612.5-2 chr11 85896035 85896227 + 4.5 NA intron (NM_001286159, intron 6 of 10) Tigger4a|DNA|TcMar-Tigger 41030 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 1197 chr4 73758123 73758518 + 4.5 NA Intergenic L1MB3|LINE|L1 17751 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 759 chr1 204786656 204786915 + 4.5 NA Intergenic L1M4|LINE|L1 -41867 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 1125.5 chr4 684322 684614 + 4.5 NA intron (NM_001294342, intron 4 of 7) intron (NM_001294342, intron 4 of 7) 4683 NM_001294341 84179 Hs.567612 NM_032219 ENSG00000169026 SLC49A3 LP2561|MFSD7 solute carrier family 49 member 3 protein-coding 968.5 chr14 34254854 34255114 + 4.5 NA Intergenic Intergenic 207256 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 490-21 chr3 148708597 148708732 + 4.5 NA intron (NM_000685, intron 2 of 2) intron (NM_000685, intron 2 of 2) 10793 NM_031850 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 567.5-3 chr12 27690560 27690752 + 4.5 NA intron (NM_003622, intron 27 of 29) intron (NM_003622, intron 27 of 29) -5791 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 715.5-11 chr5 126342526 126342728 + 4.5 NA Intergenic Intergenic -17493 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 869-3 chr2 175831085 175831372 + 4.5 NA Intergenic L1MEc|LINE|L1 171039 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 637-11 chr7 17873841 17874106 + 4.5 NA intron (NM_001350862, intron 7 of 25) intron (NM_001350862, intron 7 of 25) 66521 NM_001350867 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 508.5-13 chr3 22546313 22546440 + 4.5 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 589237 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 632.5 chr12 109346192 109346410 + 4.5 NA Intergenic MER2|DNA|TcMar-Tigger 13187 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 680-2 chr20 38134970 38135241 + 4.5 NA intron (NM_004613, intron 10 of 12) intron (NM_004613, intron 10 of 12) 30165 NM_001323317 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 646-6 chr8 30372459 30372746 + 4.5 NA Intergenic AluJr|SINE|Alu -11899 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 444-33 chr8 125172769 125172914 + 4.5 NA intron (NR_146191, intron 5 of 8) ERVL-E-int|LTR|ERVL 80981 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 548.5-15 chr5 44826530 44826719 + 4.5 NA Intergenic L3|LINE|CR1 17677 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 829.5-6 chr8 114145486 114145693 + 4.5 NA Intergenic Intergenic -708650 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 395.5-9 chr14 98141176 98141263 + 4.5 NA Intergenic L2a|LINE|L2 -163095 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 596.5-8 chr5 51826487 51826708 + 4.5 NA Intergenic L2a|LINE|L2 -181434 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 737-2 chr1 92121468 92121712 + 4.5 NA intron (NM_183242, intron 4 of 8) L1ME1|LINE|L1 41245 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 1110-2 chr4 41123870 41124274 + 4.5 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 90470 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 434.5-18 chr7 91409617 91409780 + 4.5 NA Intergenic Intergenic 145265 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 633-3 chr16 69672512 69672716 + 4.5 NA intron (NM_173215, intron 9 of 13) intron (NM_173215, intron 9 of 13) 36061 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 930-3 chr2 43909552 43909946 + 4.5 NA intron (NM_133259, intron 30 of 37) L1MA10|LINE|L1 70778 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 826.5-4 chr20 43631336 43631884 + 4.5 NA intron (NM_001323578, intron 10 of 13) intron (NM_001323578, intron 10 of 13) -35409 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 566-15 chr8 30630984 30631270 + 4.5 NA intron (NM_001348353, intron 3 of 6) AluSz|SINE|Alu -7453 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 593.5-2 chr10 51598511 51598666 + 4.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 101007 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 685.5-7 chr5 26806590 26807033 + 4.5 NA Intergenic L1MCa|LINE|L1 231775 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1004-4 chr7 28117995 28118307 + 4.5 NA intron (NM_175061, intron 1 of 4) U6|snRNA|snRNA -62306 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 880-2 chr14 69156723 69157034 + 4.5 NA Intergenic AluJr|SINE|Alu -3681 NM_001284206 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 778 chr14 62527911 62528200 + 4.5 NA Intergenic L1MC1|LINE|L1 -388082 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1002.5 chr7 110228482 110228934 + 4.5 NA Intergenic Intergenic -268495 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 709.5-3 chr2 223625516 223625823 + 4.5 NA Intergenic Intergenic -23308 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 612-12 chr9 28093889 28094117 + 4.5 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 -520137 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 696-2 chr12 43779712 43780021 + 4.5 NA intron (NM_001351343, intron 7 of 10) L2c|LINE|L2 20922 NM_001351338 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 893.5-3 chr5 159696039 159696642 + 4.5 NA Intergenic Intergenic 175044 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 865.5-3 chr14 68402639 68402883 + 4.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 226026 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 534.5-6 chr3 76380185 76380338 + 4.5 NA Intergenic Intergenic -594712 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 664.5-14 chr7 145368805 145369057 + 4.5 NA Intergenic Intergenic -532878 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 918.5 chr1 201673581 201673809 + 4.5 NA intron (NM_020443, intron 1 of 29) intron (NM_020443, intron 1 of 29) 25373 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 961.5-2 chr2 178717830 178718062 + 4.5 NA exon (NM_001267550, exon 86 of 363) exon (NM_001267550, exon 86 of 363) -58980 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 961 chr13 74626996 74627396 + 4.5 NA Intergenic L2c|LINE|L2 74353 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 586.5-10 chr3 192785950 192786136 + 4.5 NA Intergenic L1M8|LINE|L1 -58502 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 742.5-9 chr5 43832935 43833211 + 4.5 NA Intergenic Intergenic -229843 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 841-3 chr20 56236800 56237128 + 4.5 NA Intergenic MIR|SINE|MIR -11768 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 559.5-16 chr5 26919997 26920173 + 4.5 NA intron (NM_016279, intron 2 of 11) L1M1|LINE|L1 118501 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 252-13 chr2 52212586 52212652 + 4.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -158029 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 637-16 chr8 91293115 91293339 + 4.5 NA intron (NM_134266, intron 3 of 18) intron (NM_134266, intron 3 of 18) 43908 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 999.5-4 chr8 106676532 106677051 + 4.5 NA intron (NM_181354, intron 1 of 13) intron (NM_181354, intron 1 of 13) 18983 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 778.5-3 chr14 72090978 72091326 + 4.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 157625 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 610.5-6 chr17 61326138 61326346 + 4.5 NA intron (NM_001330413, intron 23 of 25) L2c|LINE|L2 41462 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 878.5 chr8 31108012 31108371 + 4.5 NA intron (NM_000553, intron 18 of 34) intron (NM_000553, intron 18 of 34) -74835 NM_001323312 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 906-2 chr1 157850126 157850351 + 4.5 NA Intergenic Intergenic -8430 NM_005894 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 487.5-17 chr2 199464796 199465008 + 4.5 NA 5' UTR (NM_001172517, exon 1 of 12) 5' UTR (NM_001172517, exon 1 of 12) 206 NM_001172517 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 1158-2 chr21 26676585 26676959 + 4.5 NA Intergenic Intergenic -103486 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 1208.5 chr3 88440332 88440884 + 4.5 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 102152 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 709-8 chr2 238012252 238012661 + 4.5 NA intron (NR_037904, intron 4 of 18) Charlie2a|DNA|hAT-Charlie 43663 NM_001278305 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 664.5-8 chr3 147421929 147422101 + 4.5 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 688 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 619-4 chr10 72120799 72121121 + 4.5 NA intron (NM_001369103, intron 8 of 9) L1MCa|LINE|L1 -31928 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 864.5-3 chr2 63209845 63210202 + 4.5 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -90481 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 969-3 chr5 20255059 20255311 + 4.5 NA intron (NM_001291956, intron 2 of 14) L1PA16|LINE|L1 -50366 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 1045.5 chr1 238864895 238865171 + 4.5 NA Intergenic LTR1D|LTR|ERV1 -379016 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 808-3 chr12 7535719 7536037 + 4.5 NA Intergenic Intergenic -32060 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 548.5-10 chr2 127338369 127338573 + 4.5 NA intron (NM_006609, intron 2 of 15) L1PA13|LINE|L1 4758 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 679.5-4 chr2 15312747 15312929 + 4.5 NA intron (NR_052013, intron 38 of 50) intron (NR_052013, intron 38 of 50) 248496 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1290 chr1 109579361 109579824 + 4.5 NA intron (NM_006496, intron 4 of 8) intron (NM_006496, intron 4 of 8) -19301 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 625-10 chr3 98787531 98787848 + 4.5 NA intron (NM_001323367, intron 6 of 9) intron (NM_001323367, intron 6 of 9) 24382 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 1147.5 chr2 221695819 221696152 + 4.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -121783 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 889.5 chr2 9061609 9061879 + 4.5 NA Intergenic MIRb|SINE|MIR -58060 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 579-23 chr7 20362911 20363084 + 4.5 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -31235 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 868.5-4 chr8 56859793 56860143 + 4.5 NA Intergenic Intergenic 133899 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 1049.5-2 chr8 115082470 115083101 + 4.5 NA Intergenic Intergenic 585228 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 888-5 chr6 27360341 27360661 + 4.5 NA intron (NR_024553, intron 4 of 4) intron (NR_024553, intron 4 of 4) 11024 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 632-2 chr1 117910466 117910691 + 4.5 NA intron (NM_001135589, intron 5 of 12) intron (NM_001135589, intron 5 of 12) 19043 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 911-2 chr4 30465649 30466003 + 4.5 NA Intergenic Intergenic -254543 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 770.5-2 chr14 64168589 64168821 + 4.5 NA intron (NM_015180, intron 92 of 114) intron (NM_015180, intron 92 of 114) -45439 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 761-5 chr4 106184218 106184451 + 4.5 NA intron (NM_001290768, intron 23 of 26) intron (NM_001290768, intron 23 of 26) -131276 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 931.5 chr7 105171115 105171520 + 4.5 NA intron (NM_182692, intron 3 of 15) intron (NM_182692, intron 3 of 15) 97760 NM_001350739 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 1089-2 chr9 92211661 92212030 + 4.5 NA intron (NR_073446, intron 32 of 32) L1MC5|LINE|L1 -20689 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 371.5-22 chr4 130835935 130836221 + 4.5 NA Intergenic Intergenic 459717 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 588-33 chr8 121531010 121531180 + 4.5 NA Intergenic MIRb|SINE|MIR -108251 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 588-28 chr5 110479449 110479618 + 4.5 NA intron (NM_001039763, intron 12 of 13) L1ME3A|LINE|L1 34382 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 712-4 chr2 240028937 240029340 + 4.5 NA TTS (NM_001005853) TTS (NM_001005853) 1291 NM_001005853 389090 Hs.531343 NM_001005853 ENSG00000182083 OR6B2 OR2-1|OR6B2P olfactory receptor family 6 subfamily B member 2 protein-coding 694-9 chr4 91286339 91286598 + 4.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 990834 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 1179 chr5 156307222 156307691 + 4.5 NA Intergenic L1MB3|LINE|L1 -19301 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 973.5 chr2 104421129 104421430 + 4.5 NA Intergenic Intergenic -7248 NR_135589 101927331 Hs.352254 NR_135589 ENSG00000225765 LINC01831 - long intergenic non-protein coding RNA 1831 ncRNA 685.5-8 chr5 104971083 104971354 + 4.5 NA Intergenic Intergenic -128256 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 615-3 chr11 39845039 39845226 + 4.5 NA Intergenic Intergenic 447998 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 529.5-18 chr5 50766360 50766504 + 4.5 NA intron (NM_024615, intron 7 of 25) A-rich|Low_complexity|Low_complexity 99018 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 641-9 chr5 84876804 84877135 + 4.5 NA Intergenic L1MA3|LINE|L1 -492089 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 587-13 chr6 20461947 20462120 + 4.5 NA intron (NM_001243076, intron 1 of 6) L1M5|LINE|L1 58354 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 856-8 chr5 40037202 40037514 + 4.5 NA Intergenic Intergenic -14933 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 738.5-3 chr2 81461845 81462214 + 4.5 NA intron (NR_110161, intron 2 of 2) intron (NR_110161, intron 2 of 2) 4917 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 674.5-5 chr2 63476639 63476860 + 4.5 NA intron (NR_148704, intron 7 of 18) intron (NR_148704, intron 7 of 18) -38742 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 1029.5 chr14 35727447 35728017 + 4.5 NA intron (NM_014990, intron 13 of 40) intron (NM_014990, intron 13 of 40) 35199 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 641-5 chr2 194626561 194626723 + 4.5 NA Intergenic L1ME3|LINE|L1 -103953 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 862-9 chr8 124135934 124136221 + 4.5 NA intron (NR_103547, intron 1 of 4) L1MB3|LINE|L1 35445 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 767-3 chr12 12143079 12143317 + 4.5 NA intron (NM_002336, intron 15 of 22).2 L1M5|LINE|L1 31246 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 1629 chr1 18039058 18039666 + 4.5 NA Intergenic Intergenic -26295 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 772.5-2 chr12 72690767 72690959 + 4.5 NA Intergenic Intergenic -417354 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 661.5-5 chr2 76470197 76470403 + 4.5 NA Intergenic L1MC5a|LINE|L1 -515665 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 546-15 chr8 117699759 117699931 + 4.5 NA Intergenic Intergenic 179132 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 797-7 chr8 67306962 67307227 + 4.5 NA intron (NM_006421, intron 1 of 38) MARNA|DNA|TcMar-Mariner 36687 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 896-3 chr5 8194442 8194797 + 4.5 NA Intergenic MSTA|LTR|ERVL-MaLR 262945 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 473-29 chr9 110694998 110695128 + 4.5 NA intron (NM_001166281, intron 3 of 11) intron (NM_001166281, intron 3 of 11) 26272 NM_005592 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 499.5-21 chr6 17204740 17204950 + 4.5 NA Intergenic Intergenic -76516 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 1004-5 chr8 124494051 124494346 + 4.5 NA intron (NM_001146160, intron 8 of 9) intron (NM_001146160, intron 8 of 9) 14378 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 591-10 chr4 54979840 54980011 + 4.5 NA Intergenic L1MA2|LINE|L1 145670 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 749.5-8 chr6 68050700 68051026 + 4.5 NA Intergenic L1MC2|LINE|L1 -4488 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 566-4 chr13 92738675 92738888 + 4.5 NA intron (NM_004466, intron 7 of 7) MER103C|DNA|hAT-Charlie -17167 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 514.5-13 chr20 20457769 20457956 + 4.5 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 89758 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 675.5-11 chr8 28228149 28228398 + 4.5 NA Intergenic Intergenic -88995 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 636-11 chr16 53434004 53434196 + 4.5 NA promoter-TSS (NM_005611) promoter-TSS (NM_005611) -371 NM_001323610 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 989.5-2 chr8 85387645 85388007 + 4.5 NA Intergenic AluSx1|SINE|Alu -9713 NM_001128831 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 610-12 chr4 89592824 89592991 + 4.5 NA Intergenic L1M4|LINE|L1 -243494 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 551-24 chr5 9851602 9851770 + 4.5 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -2691 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 501-18 chr5 44682740 44682876 + 4.5 NA Intergenic Intergenic 125985 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 380-14 chr4 118934985 118935086 + 4.5 NA intron (NM_001128934, intron 1 of 4) L3|LINE|CR1 46181 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 819-6 chr3 136688161 136688489 + 4.5 NA intron (NM_005862, intron 1 of 33) ERV24B_Prim-int|LTR|ERV1 64053 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 473-20 chr6 46353759 46353933 + 4.5 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) -27954 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 814.5-2 chr11 42960539 42960759 + 4.5 NA Intergenic Intergenic 308720 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 869-7 chr7 7512586 7512957 + 4.5 NA intron (NM_001037763, intron 8 of 34) intron (NM_001037763, intron 8 of 34) 23102 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 445.5-28 chr8 126300511 126300718 + 4.5 NA Intergenic Intergenic -24881 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1102 chr4 39088855 39089130 + 4.5 NA intron (NM_199039, intron 4 of 9) L2c|LINE|L2 26760 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 839.5-2 chr2 168128912 168129334 + 4.5 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) 118472 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 1254 chr9 91212894 91213327 + 4.5 NA TTS (NM_001351433) TTS (NM_001351433) 94048 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 1029.5-2 chr17 63251920 63252194 + 4.5 NA intron (NM_025185, intron 7 of 25) intron (NM_025185, intron 7 of 25) 188210 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 783-6 chr3 95358863 95359084 + 4.5 NA Intergenic L1MDa|LINE|L1 324220 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 522-30 chr8 62084452 62084583 + 4.5 NA Intergenic L1P1|LINE|L1 -164337 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 634.5-2 chr12 86881997 86882177 + 4.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 -43087 NM_001351286 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 669-4 chr11 84263755 84264061 + 4.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 9372 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1275 chr11 78337618 78338055 + 4.5 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 4044 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 1158.5 chr8 87355099 87355639 + 4.5 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 488954 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 594.5-2 chr11 11911435 11911691 + 4.5 NA intron (NM_001282659, intron 8 of 27) L1MD2|LINE|L1 70140 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 603-7 chr2 54839339 54839525 + 4.5 NA intron (NM_001039753, intron 6 of 40) intron (NM_001039753, intron 6 of 40) 114420 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 953-3 chr3 128034053 128034508 + 4.5 NA Intergenic AluSz6|SINE|Alu -18157 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 611.5-10 chr7 143879935 143880269 + 4.5 NA intron (NM_001206938, intron 1 of 8) (TAG)n|Simple_repeat|Simple_repeat 5268 NM_001206941 9747 Hs.735149 NM_014719 ENSG00000198420 TCAF1 FAM115A TRPM8 channel associated factor 1 protein-coding 967-2 chr2 74004827 74005130 + 4.5 NA intron (NM_001287491, intron 3 of 11) intron (NM_001287491, intron 3 of 11) 2286 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 413-10 chr12 13764610 13764728 + 4.5 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 215687 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 1195.5 chr8 85181109 85181431 + 4.5 NA intron (NM_001083588, intron 1 of 7) intron (NM_001083588, intron 1 of 7) 4116 NM_001083588 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 725 chr10 80318933 80319214 + 4.5 NA Intergenic L1MC3|LINE|L1 -25672 NR_070308 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 1085.5 chr7 53948249 53948675 + 4.5 NA Intergenic Intergenic -136531 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1054-4 chr6 3085027 3085461 + 4.5 NA intron (NM_001354930, intron 5 of 10) intron (NM_001354930, intron 5 of 10) 16750 NM_001354930 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 IMD57|RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 724-8 chr20 14866867 14867145 + 4.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 62512 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 808-7 chr3 34576328 34576659 + 4.5 NA Intergenic X8_LINE|LINE|CR1 777863 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 553-15 chr9 29881708 29881867 + 4.5 NA Intergenic Intergenic 526667 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 607.5-15 chr6 102442346 102442592 + 4.5 NA Intergenic Intergenic 1043484 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 940 chr14 30630053 30630501 + 4.5 NA intron (NM_001283032, intron 2 of 23) intron (NM_001283032, intron 2 of 23) 7958 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 488-3 chr12 39560535 39560665 + 4.5 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 59203 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 928.5-2 chr16 2766640 2766912 + 4.5 NA exon (NM_016333, exon 11 of 15) exon (NM_016333, exon 11 of 15) 10504 NM_207013 6923 Hs.172772 NM_007108 ENSG00000103363 ELOB SIII|TCEB2 elongin B protein-coding 919.5-2 chr6 90834176 90834512 + 4.5 NA Intergenic Intergenic -247272 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 426.5-13 chr2 13436124 13436236 + 4.5 NA Intergenic Intergenic -429167 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 649.5-5 chr18 13026536 13026784 + 4.5 NA intron (NM_032142, intron 9 of 44) L1MB2|LINE|L1 35298 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 594-14 chr7 17375168 17375339 + 4.5 NA intron (NR_110015, intron 1 of 2) L4_A_Mam|LINE|RTE-X 336 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 831.5 chr1 79567393 79567646 + 4.5 NA Intergenic Intergenic -560789 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 456-16 chr21 30709424 30709543 + 4.5 NA Intergenic Intergenic 9294 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 499.5-17 chr4 117536317 117536511 + 4.5 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 108016 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 745.5-8 chr2 48139462 48139724 + 4.5 NA Intergenic LTR81A|LTR|Gypsy -175089 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 620.5-5 chr3 178490838 178491085 + 4.5 NA Intergenic Intergenic -45475 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 625-8 chr2 107578708 107578957 + 4.5 NA Intergenic Intergenic 49413 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 856.5-2 chr12 33737814 33738031 + 4.5 NA Intergenic Intergenic -284574 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 749-4 chr3 182974401 182974637 + 4.5 NA intron (NM_001308101, intron 1 of 6) intron (NM_001308101, intron 1 of 6) 6019 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 575-12 chr5 124083487 124083667 + 4.5 NA intron (NR_125774, intron 4 of 5) FLAM_C|SINE|Alu 354943 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 619-6 chr14 69860819 69861185 + 4.5 NA Intergenic Intergenic -18414 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 717-9 chr7 87829955 87830162 + 4.5 NA 3' UTR (NM_001134405, exon 11 of 11) 3' UTR (NM_001134405, exon 11 of 11) 46302 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 536-10 chr2 229680992 229681141 + 4.5 NA intron (NM_139072, intron 1 of 12) MER63A|DNA|hAT-Blackjack 33489 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 443-21 chr2 182889806 182889926 + 4.5 NA Intergenic L1MA7|LINE|L1 -23229 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 741-6 chr8 130116419 130116592 + 4.5 NA intron (NM_001362925, intron 23 of 29) intron (NM_001362925, intron 23 of 29) -31737 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 535.5-13 chr3 74150795 74150926 + 4.5 NA Intergenic L1MB4|LINE|L1 341616 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 870.5 chr1 168213442 168213748 + 4.5 NA Intergenic MLT2B4|LTR|ERVL -12409 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 907.5-2 chr5 99191300 99191703 + 4.5 NA Intergenic Intergenic -261787 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 795.5-2 chr12 128638135 128638408 + 4.5 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 185687 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 598-4 chr19 35241074 35241231 + 4.5 NA Intergenic L1MB4|LINE|L1 -7504 NM_001260490 51599 Hs.466507 NM_015925 ENSG00000105699 LSR ILDR3|LISCH7 lipolysis stimulated lipoprotein receptor protein-coding 1089.5 chr10 60321310 60321589 + 4.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 68426 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 660-9 chr2 152716904 152717157 + 4.5 NA promoter-TSS (NM_152522) promoter-TSS (NM_152522) 431 NM_001365600 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 780-3 chr7 85829162 85829493 + 4.5 NA Intergenic Intergenic 408205 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 716-6 chr5 22400986 22401312 + 4.5 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -187299 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 743.5-5 chrX 51278149 51278551 + 4.5 NA Intergenic L2c|LINE|L2 -53881 NM_153183 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 854.5-2 chr6 139858826 139859164 + 4.5 NA intron (NR_138542, intron 2 of 2) intron (NR_138542, intron 2 of 2) 4145 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 429-34 chr7 8776613 8776733 + 4.5 NA Intergenic L1PA16|LINE|L1 343064 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 472.5-2 chr10 106863990 106864145 + 4.5 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 300639 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 730.5-2 chr15 62610049 62610379 + 4.5 NA Intergenic Intergenic 34967 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 412.5-11 chr15 42233257 42233389 + 4.5 NA intron (NM_015497, intron 10 of 19) intron (NM_015497, intron 10 of 19) -25019 NM_015289 23339 Hs.88025 NM_015289 ENSG00000166887 VPS39 TLP|VAM6|hVam6p VPS39 subunit of HOPS complex protein-coding 719.5-2 chr2 56409937 56410279 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -224338 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 812-5 chr3 27092207 27092535 + 4 NA Intergenic Intergenic 124152 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 556.5-5 chr14 46897972 46898188 + 4 NA intron (NM_001113498, intron 10 of 16) L1MD2|LINE|L1 -246299 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 800.5-5 chr8 130201315 130201613 + 4 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 95069 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 700-5 chr14 63289707 63290006 + 4 NA intron (NM_020663, intron 4 of 4) intron (NM_020663, intron 4 of 4) 29079 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 363-20 chr19 42411937 42412043 + 4 NA intron (NM_005357, intron 1 of 9) MIRb|SINE|MIR -11765 NR_073179 100996307 Hs.466840 NR_073179 ENSG00000213904 LIPE-AS1 - LIPE antisense RNA 1 ncRNA 528-18 chr2 174137486 174137737 + 4 NA intron (NM_001011708, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 110921 NM_013341 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 502-3 chr11 82760997 82761242 + 4 NA Intergenic L1MD2|LINE|L1 -27255 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 605-4 chr14 83190514 83190696 + 4 NA Intergenic L1P3|LINE|L1 547973 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 558-12 chr3 99033410 99033622 + 4 NA Intergenic L1PA15|LINE|L1 -131821 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 975.5 chr10 7300845 7301306 + 4 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 108266 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 723.5 chr14 59184537 59184796 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -4001 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1006 chr1 112449416 112449816 + 4 NA intron (NM_018704, intron 4 of 5) intron (NM_018704, intron 4 of 5) 12217 NR_036210 100422976 NR_036210 ENSG00000283296 MIR4256 - microRNA 4256 ncRNA 883.5 chr12 133147245 133147489 + 4 NA intron (NM_015394, intron 2 of 4) L1ME1|LINE|L1 16740 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 532-16 chr7 113508928 113509119 + 4 NA Intergenic MIRb|SINE|MIR -390441 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 801.5 chr14 30917495 30917998 + 4 NA intron (NM_014574, intron 7 of 15) intron (NM_014574, intron 7 of 15) -27938 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 845-3 chr4 36806606 36807077 + 4 NA Intergenic L1MA3|LINE|L1 -164941 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 616-8 chr2 1199838 1200121 + 4 NA intron (NM_018968, intron 8 of 16) L1MA4A|LINE|L1 -213482 NM_175719 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 471.5-17 chr8 141726710 141726984 + 4 NA Intergenic MIR3|SINE|MIR 59466 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 819 chr10 90168336 90168665 + 4 NA Intergenic Intergenic -211127 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 899.5-4 chr19 56163328 56163680 + 4 NA Intergenic L1ME3G|LINE|L1 -12504 NM_033106 85569 Hs.283915 NM_033106 ENSG00000197487 GALP - galanin like peptide protein-coding 613-7 chr2 206985145 206985316 + 4 NA Intergenic Intergenic 45712 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 343-5 chr10 98280853 98280989 + 4 NA Intergenic L1MDa|LINE|L1 -12727 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 579.5-3 chr10 64418531 64418706 + 4 NA Intergenic L1MEc|LINE|L1 -406910 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 827-5 chr5 97145848 97146222 + 4 NA Intergenic MIR3|SINE|MIR -3424 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 391.5-24 chr20 37895251 37895366 + 4 NA Intergenic Intergenic -7819 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 702-2 chr10 81188127 81188462 + 4 NA Intergenic Intergenic 538497 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 458-31 chr8 82136252 82136439 + 4 NA Intergenic Intergenic -294059 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 626-5 chr16 47674044 47674316 + 4 NA intron (NM_001031835, intron 27 of 31) intron (NM_001031835, intron 27 of 31) -184401 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 847 chr6 48472020 48472392 + 4 NA Intergenic Intergenic -403517 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 729-6 chr3 130422133 130422363 + 4 NA intron (NM_001278298, intron 27 of 40) intron (NM_001278298, intron 27 of 40) 76732 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 1036.5-2 chr21 25010693 25011328 + 4 NA intron (NR_046198, intron 2 of 3) MLT1C|LTR|ERVL-MaLR 170460 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 678.5-3 chr12 129971305 129971636 + 4 NA Intergenic L1MA6|LINE|L1 -67445 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 514.5-16 chr5 2721963 2722352 + 4 NA Intergenic Intergenic 9566 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 737-4 chr10 70547720 70548002 + 4 NA intron (NM_014431, intron 18 of 19) MamRep38|DNA|hAT 54880 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 644-6 chr3 106648184 106648447 + 4 NA Intergenic L2|LINE|L2 592323 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 617-6 chr4 176386937 176387214 + 4 NA Intergenic Intergenic 67109 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 557-10 chr18 65320825 65320975 + 4 NA Intergenic Intergenic -429352 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 386-20 chr2 231280595 231280749 + 4 NA intron (NM_001352757, intron 15 of 19) L1ME3G|LINE|L1 -82036 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 347-17 chr3 69208735 69208861 + 4 NA intron (NM_015123, intron 11 of 22) MLT1J|LTR|ERVL-MaLR -86203 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 846-4 chr2 62448757 62449168 + 4 NA Intergenic Intergenic 57233 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 669-14 chr8 135324448 135324650 + 4 NA Intergenic Intergenic 90418 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 387-21 chr3 16070631 16070749 + 4 NA Intergenic Intergenic -103990 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 868.5 chr10 62929522 62929833 + 4 NA Intergenic Charlie5|DNA|hAT-Charlie -110510 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 906-3 chr4 185586607 185587090 + 4 NA 3' UTR (NM_001145673, exon 23 of 23) 3' UTR (NM_001145673, exon 23 of 23) -51290 NR_047562 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 349.5-18 chr2 99818582 99818811 + 4 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 286887 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 475-28 chr6 118413422 118413619 + 4 NA Intergenic L1PA13|LINE|L1 -87853 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 538-8 chr19 57539645 57539826 + 4 NA 3' UTR (NM_153263, exon 3 of 3) 3' UTR (NM_153263, exon 3 of 3) 12379 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 674.5 chr11 76472747 76472957 + 4 NA intron (NM_001300942, intron 9 of 21) intron (NM_001300942, intron 9 of 21) 27827 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 699-10 chr2 196375377 196375663 + 4 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -13343 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 788-4 chr10 74153601 74153919 + 4 NA intron (NM_001369123, intron 1 of 9) intron (NM_001369123, intron 1 of 9) 2539 NM_001369123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 607.5-2 chr10 54111685 54111910 + 4 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -374433 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 661.5-11 chr6 79236942 79237107 + 4 NA TTS (NR_040671) TTS (NR_040671) -2342 NM_001201363 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 625-11 chr4 40966911 40967140 + 4 NA intron (NM_004307, intron 6 of 17) MER52A|LTR|ERV1 -109833 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 311-28 chr7 15894827 15894997 + 4 NA Intergenic L1MC1|LINE|L1 206534 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 1073-3 chr5 103493038 103493362 + 4 NA Intergenic L1M5|LINE|L1 48785 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 1535 chr5 54916638 54917335 + 4 NA Intergenic L1M4|LINE|L1 68607 NM_001135604 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 946 chr12 5939327 5939633 + 4 NA intron (NM_001278597, intron 1 of 25) intron (NM_001278597, intron 1 of 25) 5779 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 668-12 chr7 89929895 89930071 + 4 NA intron (NR_110029, intron 2 of 2) LTR16B2|LTR|ERVL -189417 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 578-21 chr5 55954743 55954968 + 4 NA non-coding (NR_120480, exon 12 of 18) non-coding (NR_120480, exon 12 of 18) 40108 NM_175767 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 748-11 chr6 38853202 38853435 + 4 NA exon (NM_001206927, exon 41 of 93) exon (NM_001206927, exon 41 of 93) 99789 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 616-2 chr1 210319626 210319905 + 4 NA Intergenic Charlie9|DNA|hAT-Charlie -8487 NM_001122834 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 769.5-10 chr8 57732878 57733251 + 4 NA Intergenic Intergenic -13085 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 451-17 chr3 60141323 60141502 + 4 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -60503 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 349.5-32 chr8 141838608 141838724 + 4 NA Intergenic L1MEf|LINE|L1 -52353 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 423-16 chr17 57516223 57516394 + 4 NA intron (NM_001322250, intron 6 of 13) L1MD2|LINE|L1 7289 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 602-6 chr10 118167918 118168290 + 4 NA intron (NR_026940, intron 3 of 3) L1MC5a|LINE|L1 -121163 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 462-19 chr2 78881900 78882081 + 4 NA Intergenic Intergenic -143712 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 750-10 chr22 27137426 27138018 + 4 NA Intergenic Intergenic -49794 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 498-28 chr9 122459580 122459776 + 4 NA Intergenic Intergenic 18248 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 540-19 chr6 68925608 68925911 + 4 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 290477 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 388-19 chr2 59561903 59562149 + 4 NA Intergenic Intergenic 344318 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 736-8 chr2 222779159 222779393 + 4 NA Intergenic Intergenic -81760 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 728-9 chr8 113607881 113608088 + 4 NA Intergenic Intergenic -171045 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 626.5-5 chr20 3569154 3569400 + 4 NA intron (NM_001207047, intron 11 of 24) Tigger3|DNA|TcMar-Tigger 94122 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 672 chr1 231445790 231446029 + 4 NA Intergenic AluSz|SINE|Alu -20865 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 640-3 chr2 64274669 64274890 + 4 NA Intergenic Intergenic 46378 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 626-18 chr8 17385655 17385861 + 4 NA intron (NM_004686, intron 1 of 13) MSTA|LTR|ERVL-MaLR 27593 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 919-6 chr7 96837074 96837338 + 4 NA Intergenic AluSx|SINE|Alu -127315 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 397-29 chr5 153551538 153551700 + 4 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 59447 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 500-10 chr3 178357266 178357491 + 4 NA Intergenic L1MA7|LINE|L1 -61823 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 630-16 chr6 135147315 135147558 + 4 NA Intergenic Intergenic -33872 NR_134960 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 492-5 chr11 27966713 27966865 + 4 NA Intergenic Intergenic -90026 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 598 chr10 22751278 22751461 + 4 NA Intergenic Intergenic -36791 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 492-9 chr14 81036615 81036778 + 4 NA intron (NM_001142626, intron 1 of 8) L1MA6|LINE|L1 81075 NM_001142626 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 601-6 chr9 30082289 30082482 + 4 NA Intergenic Intergenic 326069 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 483-31 chr7 10243999 10244285 + 4 NA Intergenic Intergenic -458534 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 546-10 chr3 20998550 20998820 + 4 NA Intergenic Intergenic -407041 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 640-5 chr4 47537599 47537901 + 4 NA intron (NM_020453, intron 9 of 22) intron (NM_020453, intron 9 of 22) 52475 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 691-10 chr7 43728457 43728831 + 4 NA intron (NM_001371314, intron 1 of 7) L2|LINE|L2 879 NR_146940 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 614-12 chr8 112563447 112563755 + 4 NA intron (NM_001363185, intron 22 of 66) intron (NM_001363185, intron 22 of 66) -79892 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 1200-2 chr3 48550733 48551089 + 4 NA promoter-TSS (NR_106881) promoter-TSS (NR_106881) -890 NR_106881 102465494 NR_106881 ENSG00000278799 MIR6823 hsa-mir-6823 microRNA 6823 ncRNA 606.5-7 chr6 165297207 165297400 + 4 NA intron (NM_144980, intron 5 of 8) AluSz|SINE|Alu 12302 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 489-32 chr7 109743276 109743722 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 216714 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 664.5-4 chr17 58136740 58137025 + 4 NA Intergenic L1MEf|LINE|L1 -18272 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 649-12 chr6 155926008 155926385 + 4 NA Intergenic L1MB8|LINE|L1 -20601 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 852 chr1 70686622 70686965 + 4 NA Intergenic L1PB4|LINE|L1 -19660 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 930.5-2 chr5 37498418 37498768 + 4 NA intron (NM_001345998, intron 8 of 17) L2|LINE|L2 119275 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 411.5-21 chr3 164652899 164653029 + 4 NA Intergenic Intergenic 178516 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 670-8 chr20 47135194 47135523 + 4 NA intron (NM_172110, intron 9 of 13) MIR|SINE|MIR -31609 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 639-12 chr3 131573688 131574110 + 4 NA intron (NM_130808, intron 10 of 15) intron (NM_130808, intron 10 of 15) -70928 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 1085 chr14 90899441 90899819 + 4 NA intron (NM_182398, intron 11 of 12) intron (NM_182398, intron 11 of 12) -83200 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 424.5-11 chr2 116268091 116268242 + 4 NA Intergenic LTR6A|LTR|ERV1 924351 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 450-11 chr2 221696321 221696737 + 4 NA Intergenic MER77B|LTR|ERVL -122327 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 1018-3 chr6 48673468 48673759 + 4 NA Intergenic Intergenic -604924 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 554-4 chr1 229201737 229201916 + 4 NA Intergenic LTR33B|LTR|ERVL -27025 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 356.5-29 chr3 45417280 45417479 + 4 NA intron (NM_001368263, intron 3 of 20) intron (NM_001368263, intron 3 of 20) 28803 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 339-15 chr2 3028632 3028718 + 4 NA intron (NR_110228, intron 3 of 6) MIRb|SINE|MIR 97351 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 659-12 chr5 41763774 41763980 + 4 NA intron (NR_157114, intron 12 of 15) intron (NR_157114, intron 12 of 15) 79780 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 837-2 chr12 3103843 3104276 + 4 NA intron (NM_006675, intron 2 of 8) L2a|LINE|L2 26680 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 582-2 chr11 54807512 54807757 + 4 NA Intergenic ALR/Alpha|Satellite|centr 100802 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 832-5 chr2 215955869 215956278 + 4 NA intron (NM_018000, intron 2 of 4) L3|LINE|CR1 57478 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 419-21 chr21 28320816 28320968 + 4 NA Intergenic L1M3d|LINE|L1 -92225 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1168.5-2 chr3 109722385 109722739 + 4 NA Intergenic Intergenic 119734 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 297.5-28 chr4 113503960 113504034 + 4 NA intron (NM_001321589, intron 13 of 18) intron (NM_001321589, intron 13 of 18) 211158 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 478-30 chr8 86976162 86976341 + 4 NA intron (NM_173538, intron 4 of 10) L1MA7|LINE|L1 109836 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 336-26 chr18 12690177 12690301 + 4 NA intron (NM_001271989, intron 6 of 10) intron (NM_001271989, intron 6 of 10) 12484 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 898-3 chr7 27835821 27836254 + 4 NA intron (NM_175061, intron 4 of 4) MIRb|SINE|MIR 95942 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 610-18 chr9 1909019 1909316 + 4 NA Intergenic LTR16E1|LTR|ERVL -106180 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 633-14 chrX 99450180 99450416 + 4 NA Intergenic L1M4c|LINE|L1 959975 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 491-33 chrX 16495379 16495567 + 4 NA Intergenic Charlie10a|DNA|hAT-Charlie 131612 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 696.5-3 chr14 83625247 83625692 + 4 NA Intergenic Intergenic 982837 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 856-5 chr2 226776312 226776665 + 4 NA intron (NM_005544, intron 1 of 1) L1MC3|LINE|L1 22302 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 486-4 chr10 55465792 55465977 + 4 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -133158 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 736-9 chr3 41224896 41225160 + 4 NA exon (NM_001330729, exon 5 of 17) exon (NM_001330729, exon 5 of 17) 25523 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 1094 chr11 112020375 112020882 + 4 NA 3' UTR (NM_033425, exon 16 of 16) 3' UTR (NM_033425, exon 16 of 16) -4186 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 730-2 chr1 213147440 213147656 + 4 NA intron (NM_001136138, intron 5 of 13) L1MA1|LINE|L1 96307 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 684-11 chr8 99654483 99654663 + 4 NA intron (NM_017890, intron 34 of 61) intron (NM_017890, intron 34 of 61) -117712 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 542.5-20 chr3 193965597 193965853 + 4 NA intron (NR_033944, intron 1 of 2) intron (NR_033944, intron 1 of 2) 28513 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 655-11 chr3 31348003 31348230 + 4 NA Intergenic MIR3|SINE|MIR -184809 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 563-9 chr20 44383187 44383428 + 4 NA intron (NR_109949, intron 3 of 3) MIR|SINE|MIR 12399 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 674 chr14 51347146 51347511 + 4 NA intron (NR_038358, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 13935 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 702.5-4 chr3 80997705 80998021 + 4 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 3995 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 741.5-3 chr5 114064611 114064898 + 4 NA Intergenic Intergenic -297316 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 360.5-12 chr2 198240853 198241055 + 4 NA Intergenic MER5B|DNA|hAT-Charlie 134143 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 619-7 chr19 48279694 48280002 + 4 NA intron (NM_001369812, intron 4 of 5) intron (NM_001369812, intron 4 of 5) 8561 NM_001369812 163071 Hs.511883 NM_153608 ENSG00000178150 ZNF114 - zinc finger protein 114 protein-coding 509.5-14 chr7 106472122 106472316 + 4 NA Intergenic L1MEc|LINE|L1 -187236 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 630-13 chr2 182777912 182778143 + 4 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 61770 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 617.5 chr1 178425141 178425331 + 4 NA intron (NM_004841, intron 3 of 15) intron (NM_004841, intron 3 of 15) 83785 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 382-35 chr4 43869806 43869940 + 4 NA Intergenic Intergenic -146988 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 689.5-4 chr4 20529965 20530228 + 4 NA intron (NM_001289135, intron 15 of 35) intron (NM_001289135, intron 15 of 35) 1821 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 387.5-2 chr11 56669203 56669364 + 4 NA Intergenic Intergenic 5597 NM_001004730 219493 Hs.553633 NM_001004730 ENSG00000172459 OR5AR1 OR11-209 olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene) protein-coding 780.5 chr1 158550969 158551269 + 4 NA Intergenic Intergenic -3014 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 851.5-2 chr2 219132316 219132686 + 4 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 28364 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 858-2 chr13 80605252 80605588 + 4 NA Intergenic Intergenic -264294 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 567-7 chr17 75274766 75274916 + 4 NA TTS (NR_036520) TTS (NR_036520) 3542 NR_036520 100287042 Hs.514470 NR_036520 ENSG00000263843 LOC100287042 - uncharacterized LOC100287042 ncRNA 597.5 chr10 121517079 121517298 + 4 NA intron (NM_001144914, intron 5 of 14) intron (NM_001144914, intron 5 of 14) 14126 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 688-3 chr18 7631606 7631852 + 4 NA intron (NM_002845, intron 1 of 30) MER30|DNA|hAT-Charlie 64413 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 652-11 chr20 35928820 35929106 + 4 NA intron (NM_016436, intron 14 of 17) intron (NM_016436, intron 14 of 17) 25663 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 827.5-4 chr8 41505369 41505654 + 4 NA intron (NM_001002296, intron 2 of 4) intron (NM_001002296, intron 2 of 4) 14899 NM_001362980 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 752-3 chr18 12574550 12574893 + 4 NA intron (NM_020148, intron 2 of 15) L2c|LINE|L2 82011 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 451-7 chr10 126660888 126661090 + 4 NA intron (NM_001350922, intron 1 of 8) intron (NM_001350922, intron 1 of 8) 9521 NM_001350922 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 662-2 chr17 79362555 79362762 + 4 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 153490 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 786.5-2 chr2 39876400 39876696 + 4 NA Intergenic MIRb|SINE|MIR -41086 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 430-23 chr4 115476650 115476861 + 4 NA Intergenic L1PREC2|LINE|L1 -363135 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 899-2 chr5 122818768 122819127 + 4 NA exon (NM_001278199, exon 11 of 15) exon (NM_001278199, exon 11 of 15) -26502 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 749-7 chr7 85231902 85232114 + 4 NA Intergenic Intergenic -110077 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 668-5 chr12 61363856 61364067 + 4 NA Intergenic MER58A|DNA|hAT-Charlie 828878 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 931-2 chr14 68144522 68145059 + 4 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 321198 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 570.5-7 chr2 200875815 200875996 + 4 NA intron (NM_130906, intron 6 of 6) intron (NM_130906, intron 6 of 6) -11247 NM_004071 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 770-3 chr10 104378873 104379169 + 4 NA intron (NM_001008723, intron 8 of 17) intron (NM_001008723, intron 8 of 17) 25188 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 452-18 chr3 13979939 13980097 + 4 NA intron (NR_002223, intron 1 of 2) intron (NR_002223, intron 1 of 2) 42711 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 744-4 chr12 59076323 59076728 + 4 NA Intergenic Intergenic -155987 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 695-11 chr8 82892608 82892843 + 4 NA Intergenic Intergenic -19379 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 695-8 chr2 168665422 168665819 + 4 NA intron (NM_001256126, intron 4 of 10) L2a|LINE|L2 82677 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 1032 chr12 11692773 11693130 + 4 NA intron (NM_001987, intron 1 of 7) AluJb|SINE|Alu 43097 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 702.5-5 chr8 76907503 76907770 + 4 NA Intergenic Intergenic 59214 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 469.5-21 chr8 123405980 123406163 + 4 NA Intergenic L1ME3A|LINE|L1 -9624 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 836.5 chr11 6251181 6251572 + 4 NA Intergenic Intergenic -8462 NM_176875 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 570-23 chr7 35795692 35795931 + 4 NA intron (NR_120512, intron 1 of 4) Charlie1b|DNA|hAT-Charlie 4814 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 681-8 chr7 8168601 8168836 + 4 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 93334 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 314-3 chr10 104905512 104905666 + 4 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -239373 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 658.5-12 chr7 3531414 3531707 + 4 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 230308 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 673-3 chr3 196415068 196415270 + 4 NA intron (NM_015562, intron 1 of 10) AluSc|SINE|Alu -16216 NR_046745 100874034 Hs.617990 NR_046745 UBXN7-AS1 - UBXN7 antisense RNA 1 ncRNA 680.5-5 chr9 30591718 30591960 + 4 NA Intergenic Intergenic -183385 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 530.5-3 chr12 39067896 39068086 + 4 NA Intergenic Intergenic -162400 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 533.5-5 chr18 40241990 40242249 + 4 NA Intergenic L1ME3C|LINE|L1 175833 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 723-7 chr3 123063428 123063950 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -3336 NR_028444 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 1072-2 chr9 79154534 79154933 + 4 NA Intergenic Intergenic -9067 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 736-13 chr9 98814798 98815181 + 4 NA intron (NM_024642, intron 1 of 9) intron (NM_024642, intron 1 of 9) 7319 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 961-5 chrX 70632381 70632865 + 4 NA intron (NM_001003811, intron 18 of 30) L1ME1|LINE|L1 -176629 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 656-15 chr9 89620675 89620929 + 4 NA Intergenic Intergenic 15790 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 790 chr10 20998511 20998972 + 4 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -101139 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 644.5 chr13 77644065 77644417 + 4 NA intron (NM_003843, intron 31 of 31) intron (NM_003843, intron 31 of 31) 18562 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 428-16 chr2 156596616 156596750 + 4 NA Intergenic Intergenic 160304 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 422-20 chr3 113280668 113280829 + 4 NA intron (NM_001301861, intron 14 of 19) intron (NM_001301861, intron 14 of 19) 68632 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 1035 chr12 47364660 47365244 + 4 NA promoter-TSS (NR_039715) promoter-TSS (NR_039715) -683 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 757-5 chr3 28614781 28615064 + 4 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 39644 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 602-18 chr5 175214620 175214835 + 4 NA Intergenic MIRb|SINE|MIR -218996 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 526-10 chr21 36949354 36949573 + 4 NA intron (NM_001242784, intron 2 of 11) MLT1G1|LTR|ERVL-MaLR 12895 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 850-6 chr2 63394542 63394762 + 4 NA intron (NR_148704, intron 11 of 18) L1PA15|LINE|L1 43355 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 528-6 chr11 21810318 21810568 + 4 NA Intergenic Intergenic -382642 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 620-2 chr1 162525126 162525313 + 4 NA 3' UTR (NM_001184763, exon 8 of 8) 3' UTR (NM_001184763, exon 8 of 8) 27401 NM_175866 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 560-15 chr4 87827382 87827601 + 4 NA intron (NM_001184694, intron 1 of 3) intron (NM_001184694, intron 1 of 3) -5478 NM_001184695 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 635 chr1 78438974 78439156 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -51909 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 528-24 chr3 7363346 7363561 + 4 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 171831 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 533-8 chr12 1901260 1901498 + 4 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 17273 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 389-2 chr1 30759196 30759345 + 4 NA Intergenic Intergenic -1496 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 873-2 chr10 130401398 130401640 + 4 NA Intergenic Intergenic 265110 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 822.5-2 chr11 115499672 115500006 + 4 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 4576 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 669-6 chr13 69209458 69209670 + 4 NA Intergenic Intergenic -12782 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 752-6 chr8 76407051 76407425 + 4 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 584 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 1065.5 chr1 42096493 42097008 + 4 NA Intergenic MSTB1|LTR|ERVL-MaLR -56660 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 551-6 chr10 74611987 74612215 + 4 NA intron (NM_001369124, intron 8 of 9) L1PA17|LINE|L1 -82777 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 1010 chr12 99375884 99376195 + 4 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -220949 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 502-21 chr9 112086831 112087130 + 4 NA intron (NM_022486, intron 10 of 16) L1MC4|LINE|L1 88317 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 528.5-5 chr13 66601798 66602152 + 4 NA intron (NM_001318373, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger -223194 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 818 chr1 55636197 55636425 + 4 NA Intergenic Intergenic 308652 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 613.5 chr10 70746852 70747132 + 4 NA intron (NM_080722, intron 15 of 21) intron (NM_080722, intron 15 of 21) 35581 NR_134532 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 734 chr10 57942520 57942924 + 4 NA Intergenic HAL1|LINE|L1 325172 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 588.5-11 chr4 28608492 28608704 + 4 NA Intergenic Intergenic -210984 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 1062-3 chr8 116991776 116992126 + 4 NA intron (NM_001172811, intron 2 of 9) UCON18|Unknown|Unknown 40976 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 409-36 chr9 93309293 93309412 + 4 NA intron (NM_006648, intron 27 of 28) L1ME2z|LINE|L1 36951 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 828.5 chr10 109055775 109056125 + 4 NA Intergenic Intergenic 867296 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 883 chr10 17291209 17291590 + 4 NA Intergenic Intergenic -61414 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 396-2 chr1 215967984 215968102 + 4 NA intron (NM_206933, intron 36 of 71) intron (NM_206933, intron 36 of 71) -104422 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 798-2 chr3 116883659 116883976 + 4 NA Intergenic L1ME2|LINE|L1 -33450 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 604-9 chr15 57943792 57944004 + 4 NA Intergenic Intergenic 70125 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 842.5-2 chr12 39533018 39533373 + 4 NA Intergenic Intergenic 86608 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 724.5 chr1 166952953 166953297 + 4 NA intron (NM_199351, intron 3 of 9) intron (NM_199351, intron 3 of 9) 22415 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 444-9 chr16 59580673 59580788 + 4 NA Intergenic L1M2|LINE|L1 174461 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 464-9 chr16 86543910 86544123 + 4 NA intron (NR_027490, intron 5 of 7) MER1A|DNA|hAT-Charlie 11219 NR_027489 64779 Hs.343627 NM_022764 ENSG00000103248 MTHFSD - methenyltetrahydrofolate synthetase domain containing protein-coding 807-12 chr7 42948913 42949192 + 4 NA Intergenic AluSx|SINE|Alu 16676 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 816 chr1 78710454 78710905 + 4 NA Intergenic AluSp|SINE|Alu 60848 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 1348 chr15 99606944 99607526 + 4 NA intron (NM_001352615, intron 3 of 12) L1ME3G|LINE|L1 -25743 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 467.5 chr10 21449128 21449382 + 4 NA Intergenic Intergenic 47386 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 789.5-9 chr6 126962165 126962419 + 4 NA Intergenic L1M7|LINE|L1 -156379 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 602-4 chr1 221718457 221718805 + 4 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 18269 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 689.5 chr10 10978130 10978392 + 4 NA intron (NM_001326319, intron 4 of 16) intron (NM_001326319, intron 4 of 16) -26098 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 601-3 chr2 16105801 16106202 + 4 NA Intergenic Intergenic 55574 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 550.5-3 chr10 73540586 73540747 + 4 NA intron (NR_146997, intron 9 of 21) FAM|SINE|Alu 12674 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 576-10 chr21 17121160 17121393 + 4 NA Intergenic L1MC5|LINE|L1 -317614 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 718.5-8 chr2 215298669 215298903 + 4 NA Intergenic Intergenic -13273 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 698-11 chr4 74447973 74448311 + 4 NA intron (NM_001657, intron 2 of 5) intron (NM_001657, intron 2 of 5) 3006 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 700-14 chr8 40810473 40810797 + 4 NA intron (NM_024645, intron 2 of 6) L1ME5|LINE|L1 87191 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 807-10 chr6 24994470 24994692 + 4 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 47707 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 452.5-16 chr5 75628492 75628650 + 4 NA intron (NM_001276713, intron 5 of 13) intron (NM_001276713, intron 5 of 13) 17095 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 518.5-5 chr12 17271820 17271970 + 4 NA Intergenic Intergenic 283148 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 426.5-29 chr9 100645227 100645425 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 67247 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 771-4 chr12 47483727 47484062 + 4 NA Intergenic Intergenic 68886 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 573-17 chr7 6258876 6259154 + 4 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 13609 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 675.5-3 chr12 8465664 8465948 + 4 NA intron (NM_001007033, intron 4 of 5) L1MB2|LINE|L1 9844 NM_001007033 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 1013 chr16 22897106 22897486 + 4 NA intron (NM_006043, intron 1 of 1) L2b|LINE|L2 83134 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 532.5-22 chr9 28616049 28616376 + 4 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 103093 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 433-12 chr17 58651287 58651448 + 4 NA intron (NM_031272, intron 2 of 31) intron (NM_031272, intron 2 of 31) 40688 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 495-8 chr19 45249036 45249245 + 4 NA Intergenic Intergenic -2131 NM_001199867 57787 Hs.34314 NM_031417 ENSG00000007047 MARK4 MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D microtubule affinity regulating kinase 4 protein-coding 921.5 chr2 67016661 67017027 + 4 NA Intergenic Intergenic -69602 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 675-7 chr4 52569717 52569949 + 4 NA Intergenic Intergenic 86706 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 442-5 chr10 73314359 73314537 + 4 NA intron (NM_001367801, intron 10 of 27) MER104|DNA|TcMar-Tc2 44306 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 732.5-7 chr20 57825926 57826208 + 4 NA Intergenic Intergenic -114531 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 659-3 chr12 9711375 9711625 + 4 NA Intergenic Intergenic 21799 NM_001267701 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 498-13 chr18 22188069 22188254 + 4 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 18724 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 656-8 chr4 59626255 59626465 + 4 NA Intergenic MIR|SINE|MIR 612787 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 350-6 chr12 42412518 42412679 + 4 NA intron (NM_016488, intron 9 of 12) L1PB3|LINE|L1 71017 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 804-4 chr2 49736075 49736284 + 4 NA Intergenic Intergenic 238024 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 408-30 chr4 159591899 159592048 + 4 NA Intergenic MER34B-int|LTR|ERV1 185811 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 372-33 chr5 113800752 113800915 + 4 NA Intergenic MIR|SINE|MIR 287139 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 867-2 chr2 150355202 150355546 + 4 NA Intergenic MER41B|LTR|ERV1 -98367 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 580.5-4 chr2 224361380 224361563 + 4 NA Intergenic MER91B|DNA|hAT-Tip100 40523 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 855.5 chr2 60947165 60947515 + 4 NA intron (NM_144709, intron 16 of 17) intron (NM_144709, intron 16 of 17) 65766 NM_002908 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 758-3 chr15 51269901 51270206 + 4 NA intron (NM_000103, intron 1 of 9) L1ME1|LINE|L1 8089 NM_001347252 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 550-24 chr9 131648972 131649146 + 4 NA intron (NM_198679, intron 3 of 23) AluSx1|SINE|Alu 60783 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 690-5 chr17 59812261 59812633 + 4 NA intron (NM_001329400, intron 7 of 9) intron (NM_001329400, intron 7 of 9) -28819 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 584-7 chr14 71726411 71726723 + 4 NA intron (NM_001354286, intron 20 of 24) intron (NM_001354286, intron 20 of 24) 140269 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 750-9 chr22 26823074 26823554 + 4 NA Intergenic MER33|DNA|hAT-Charlie -36897 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 486-17 chr15 79597757 79597984 + 4 NA Intergenic Intergenic 165354 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 730-5 chr8 122580934 122581172 + 4 NA Intergenic Intergenic -12409 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 771-10 chr8 89040832 89041026 + 4 NA Intergenic Intergenic -713446 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 824 chr2 49681453 49681832 + 4 NA Intergenic Intergenic 292561 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 737.5-6 chr7 35536754 35536991 + 4 NA Intergenic Intergenic 158263 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 1001 chr5 106371771 106372324 + 4 NA Intergenic L1M4|LINE|L1 638967 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 352-34 chr5 123694451 123694621 + 4 NA Intergenic Intergenic 149119 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 662-7 chr6 1790515 1790781 + 4 NA intron (NM_001253846, intron 7 of 10) (TA)n|Simple_repeat|Simple_repeat 180733 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 1092 chr1 171875525 171875938 + 4 NA intron (NM_001278252, intron 1 of 14) MIR|SINE|MIR 11539 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 835-5 chr8 130130347 130130713 + 4 NA intron (NM_001362925, intron 16 of 29) intron (NM_001362925, intron 16 of 29) -45762 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 405.5-18 chr5 105405993 105406124 + 4 NA Intergenic L1MA9|LINE|L1 306584 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 706-4 chr4 23792184 23792408 + 4 NA non-coding (NR_148981, exon 14 of 14) non-coding (NR_148981, exon 14 of 14) 88996 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 1006-3 chr11 19091197 19091593 + 4 NA Intergenic Intergenic -25750 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 699-9 chr2 26065087 26065547 + 4 NA intron (NM_016131, intron 1 of 5) BLACKJACK|DNA|hAT-Blackjack 31233 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 560-20 chr6 72193672 72193855 + 4 NA intron (NM_014989, intron 6 of 33) intron (NM_014989, intron 6 of 33) -19130 NM_001350446 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 1117.5 chr5 38818372 38818806 + 4 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 27240 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 588-18 chr2 30036517 30036725 + 4 NA Intergenic MIR3|SINE|MIR -110386 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 740-8 chr5 30763066 30763349 + 4 NA Intergenic Intergenic -430479 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 647.5-8 chr5 24808943 24809130 + 4 NA Intergenic Intergenic 31547 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 826-2 chr14 53333057 53333354 + 4 NA Intergenic L1MC1|LINE|L1 179851 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 527.5-6 chr18 42391253 42391476 + 4 NA intron (NR_046174, intron 4 of 9) MIR|SINE|MIR 204696 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 627-5 chr18 12310035 12310256 + 4 NA intron (NM_001303526, intron 2 of 2) intron (NM_001303526, intron 2 of 2) 1904 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 883-4 chr2 14553528 14553981 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -78963 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1140 chr2 171792931 171793296 + 4 NA intron (NR_047549, intron 13 of 16) intron (NR_047549, intron 13 of 16) 101131 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 504.5-3 chr14 50622149 50622354 + 4 NA intron (NM_015915, intron 10 of 13) FLAM_A|SINE|Alu 46055 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 590-5 chr17 19263153 19263386 + 4 NA intron (NM_001102664, intron 1 of 7) MLT1I|LTR|ERVL-MaLR -8124 NR_046824 100874309 Hs.733657 NR_046824 EPN2-IT1 - EPN2 intronic transcript 1 ncRNA 561.5 chr1 157345319 157345579 + 4 NA Intergenic Intergenic -206858 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 525-8 chr15 54041901 54042046 + 4 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 29325 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 1026-3 chr7 81802559 81803028 + 4 NA Intergenic Intergenic -32746 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 525-4 chr12 41534681 41534885 + 4 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 97044 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 694-11 chr6 142203422 142203690 + 4 NA intron (NM_001286371, intron 6 of 6) intron (NM_001286371, intron 6 of 6) 56293 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 521-8 chr22 24975620 24975797 + 4 NA Intergenic Intergenic -29013 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 1028.5-2 chr3 121082280 121082973 + 4 NA intron (NR_145517, intron 5 of 8) MER45B|DNA|hAT-Tip100 32986 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 774-4 chr4 178403241 178403597 + 4 NA Intergenic L1ME1|LINE|L1 -495483 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 1133-2 chr4 91959630 91960193 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 317391 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 574-11 chr2 203997270 203997516 + 4 NA Intergenic Intergenic 60645 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 466-18 chr21 22353699 22353899 + 4 NA Intergenic L1ME1|LINE|L1 255182 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 522-13 chr17 32792011 32792180 + 4 NA intron (NM_015194, intron 1 of 21) L1ME4b|LINE|L1 85029 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 496-30 chrX 11784939 11785143 + 4 NA Intergenic Intergenic 25394 NM_006800 10943 Hs.655288 NM_006800 ENSG00000005302 MSL3 MSL3L1 MSL complex subunit 3 protein-coding 1137 chr2 220878951 220879349 + 4 NA Intergenic Intergenic 693154 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 536-16 chr4 89927916 89928153 + 4 NA intron (NM_001371403, intron 6 of 8) intron (NM_001371403, intron 6 of 8) 33180 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 497.5-17 chr8 89065776 89066047 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger 691800 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 801-5 chr16 82559965 82560239 + 4 NA Intergenic Intergenic -66867 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 700-6 chr16 7506974 7507253 + 4 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 174268 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 400-5 chr10 81545421 81545565 + 4 NA Intergenic Intergenic -329701 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 1187-2 chr4 78554219 78554662 + 4 NA 5' UTR (NM_005139, exon 2 of 13) 5' UTR (NM_005139, exon 2 of 13) 2670 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 777.5 chr1 74622507 74622826 + 4 NA non-coding (NR_121671, exon 3 of 3) non-coding (NR_121671, exon 3 of 3) 32931 NR_121670 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 670.5-2 chr14 24454053 24454399 + 4 NA intron (NR_110032, intron 2 of 2) L1MEd|LINE|L1 11273 NR_110032 101927045 Hs.637772 NR_110032 LOC101927045 - uncharacterized LOC101927045 ncRNA 902 chr14 50353112 50353433 + 4 NA intron (NM_001282236, intron 3 of 8) intron (NM_001282236, intron 3 of 8) 40948 NM_015684 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 593-19 chr8 105146304 105146550 + 4 NA Intergenic Intergenic -172011 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 348-23 chr3 97778451 97778613 + 4 NA intron (NR_136602, intron 2 of 7) intron (NR_136602, intron 2 of 7) 13774 NR_136595 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 863.5-3 chr5 113176946 113177308 + 4 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 117811 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 405.5-7 chr2 22566043 22566241 + 4 NA Intergenic Intergenic 29663 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 772-11 chr6 121976611 121976982 + 4 NA Intergenic HAL1M8|LINE|L1 -422755 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 1310 chr14 72392991 72393651 + 4 NA intron (NM_001370288, intron 3 of 16) MER5B|DNA|hAT-Charlie -123499 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 599-11 chr20 57964178 57964464 + 4 NA Intergenic Intergenic -39583 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 988-2 chr8 121868200 121868561 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger -226940 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 397-36 chr8 129968891 129969004 + 4 NA intron (NM_001353256, intron 2 of 13) L1MEd|LINE|L1 -29136 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 473-10 chr17 73534971 73535253 + 4 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 21429 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 662-11 chr9 96549777 96550040 + 4 NA intron (NR_147239, intron 5 of 14) intron (NR_147239, intron 5 of 14) 16923 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 924.5 chr17 70153568 70154208 + 4 NA Intergenic MER96B|DNA|hAT-Tip100 15514 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 623.5-4 chr3 164508239 164508448 + 4 NA Intergenic Intergenic 323137 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 420-32 chr5 38483765 38483939 + 4 NA intron (NM_001127671, intron 18 of 19) intron (NM_001127671, intron 18 of 19) 38306 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 502.5-3 chr11 87683669 87684078 + 4 NA Intergenic L1MEd|LINE|L1 35538 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 362-29 chr7 137313613 137313745 + 4 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) 30054 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 697-8 chr8 84556908 84557091 + 4 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 141515 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 566-6 chr17 52022770 52023039 + 4 NA intron (NM_001082533, intron 3 of 9) L1P4|LINE|L1 135810 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 584-3 chr10 36086472 36086724 + 4 NA Intergenic Intergenic 308296 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 639-3 chr11 28900093 28900257 + 4 NA Intergenic Intergenic -422627 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 614.5-6 chr3 87123028 87123380 + 4 NA intron (NR_104153, intron 1 of 2) MIR|SINE|MIR 33924 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 656.5-2 chr10 24757919 24758189 + 4 NA Intergenic L1M6|LINE|L1 -34167 NM_001367447 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 630-6 chr11 107355762 107355996 + 4 NA intron (NM_152434, intron 12 of 17) L1M4|LINE|L1 101967 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 659 chr11 5811543 5811792 + 4 NA Intergenic L1MB2|LINE|L1 -8669 NM_001005174 390077 Hs.553737 NM_001005174 ENSG00000180988 OR52N2 OR11-57 olfactory receptor family 52 subfamily N member 2 protein-coding 542.5-11 chr2 76755505 76755983 + 4 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -230221 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1063.5 chr5 45154413 45154976 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 345747 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 647-2 chr1 210051757 210051975 + 4 NA intron (NM_153262, intron 4 of 7) intron (NM_153262, intron 4 of 7) 113649 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 492-19 chr2 176571459 176571614 + 4 NA Intergenic Intergenic 29516 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 812.5 chr15 88938767 88939040 + 4 NA Intergenic MER4-int|LTR|ERV1 -25524 NM_001310320 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 569.5-13 chr5 12831262 12831415 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 163479 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 406-12 chr2 69694755 69694876 + 4 NA intron (NM_001320698, intron 2 of 14) FLAM_C|SINE|Alu -47319 NM_001365496 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 780 chr19 27661465 27661705 + 4 NA Intergenic ALR/Alpha|Satellite|centr -131846 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 470.5-5 chr14 84093281 84093404 + 4 NA Intergenic Intergenic -1178590 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 808 chr10 129198920 129199250 + 4 NA Intergenic Intergenic -268156 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 820-8 chr8 133400904 133401286 + 4 NA Intergenic MIR1_Amn|SINE|MIR -103791 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 762-5 chr2 31604255 31604604 + 4 NA Intergenic L1MA2|LINE|L1 -23491 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 647.5-4 chr19 43808286 43808630 + 4 NA intron (NM_182573, intron 1 of 4) Zaphod2|DNA|hAT-Tip100 -6011 NM_001031749 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 920-3 chr18 2674977 2675592 + 4 NA intron (NM_015295, intron 5 of 47) AluSx3|SINE|Alu 19397 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 582-17 chr5 33020561 33020742 + 4 NA Intergenic Intergenic 73208 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 551.5-11 chr8 97812802 97813048 + 4 NA intron (NM_018407, intron 2 of 6) intron (NM_018407, intron 2 of 6) 37137 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 486.5-13 chr22 50539607 50539771 + 4 NA Intergenic MER57F|LTR|ERV1 -6210 NM_138433 113730 Hs.137007 NM_138433 ENSG00000130487 KLHDC7B - kelch domain containing 7B protein-coding 348.5-9 chr19 28635096 28635234 + 4 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 28477 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 469.5-13 chr3 114448758 114449024 + 4 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -4702 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 728-10 chr8 114566630 114566952 + 4 NA Intergenic L1MA3|LINE|L1 1101222 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 724.5-7 chr4 88075236 88075591 + 4 NA intron (NR_156488, intron 13 of 13) intron (NR_156488, intron 13 of 13) 67778 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 689-5 chr15 98402090 98402377 + 4 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) 18765 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 588-4 chr10 89006985 89007232 + 4 NA intron (NR_028034, intron 2 of 5) MIRc|SINE|MIR -14133 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 765 chr10 21052187 21052550 + 4 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -121622 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 765-6 chr5 15410091 15410473 + 4 NA Intergenic MER3|DNA|hAT-Charlie -89898 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 520-15 chr2 104200697 104200955 + 4 NA Intergenic Intergenic 207506 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 326-34 chr6 121845454 121845566 + 4 NA Intergenic Intergenic 409864 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 1233 chr12 75144714 75145261 + 4 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 64761 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 769-6 chr9 119061684 119062088 + 4 NA Intergenic L1MDa|LINE|L1 307549 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 708-4 chr2 51160188 51160438 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 127712 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 803.5 chr4 48022188 48022552 + 4 NA intron (NM_207330, intron 1 of 5) intron (NM_207330, intron 1 of 5) 5598 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 690-10 chr2 214466333 214466680 + 4 NA intron (NM_001080500, intron 3 of 3) L1ME1|LINE|L1 -43676 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 374-18 chr2 172061226 172061394 + 4 NA intron (NM_001322279, intron 1 of 9) intron (NM_001322279, intron 1 of 9) -24197 NM_178120 1745 Hs.407015 NM_178120 ENSG00000144355 DLX1 - distal-less homeobox 1 protein-coding 643-4 chr1 114479214 114479414 + 4 NA intron (NM_015906, intron 1 of 19) L1M4a1|LINE|L1 31889 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 920 chr12 66388331 66388628 + 4 NA intron (NM_001366722, intron 19 of 24) intron (NM_001366722, intron 19 of 24) 85934 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 649.5 chr1 45033158 45033355 + 4 NA intron (NM_020883, intron 11 of 13) L1ME4b|LINE|L1 21002 NR_158184 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 491.5-17 chr5 27488946 27489152 + 4 NA intron (NR_038848, intron 3 of 4) intron (NR_038848, intron 3 of 4) 16757 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 746-4 chr3 162266732 162267028 + 4 NA Intergenic Intergenic 770072 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 632-5 chr13 96302613 96302857 + 4 NA intron (NM_153456, intron 1 of 1) (ATAAT)n|Simple_repeat|Simple_repeat -124494 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 697.5-5 chr20 12900211 12900460 + 4 NA intron (NR_109868, intron 8 of 11) intron (NR_109868, intron 8 of 11) 36628 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 1142 chr6 62890691 62891178 + 4 NA Intergenic Intergenic 429043 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 651.5-8 chr7 49429052 49429508 + 4 NA Intergenic Intergenic -344358 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 415-7 chr10 62575445 62575618 + 4 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 55083 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 460.5-14 chr2 54934221 54934370 + 4 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 75977 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 1078.5-2 chr5 44246702 44247094 + 4 NA Intergenic Intergenic -141834 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 701-2 chr10 24031722 24032276 + 4 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -176792 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 424-19 chr5 41216348 41216491 + 4 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) -2887 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 540-15 chr22 26590512 26590665 + 4 NA promoter-TSS (NM_001362922) promoter-TSS (NM_001362922) -456 NM_003595 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 643-14 chr6 49221109 49221290 + 4 NA Intergenic L1MA9|LINE|L1 242054 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 624 chr1 179298510 179298959 + 4 NA intron (NR_045530, intron 1 of 13) MER47A|DNA|TcMar-Tigger 4937 NR_045530 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 618-18 chr8 131462179 131462409 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -421385 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 598-15 chr8 114220092 114220255 + 4 NA Intergenic Intergenic -783234 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 648.5-2 chr14 42607066 42607307 + 4 NA Intergenic L1PB4|LINE|L1 1000330 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 854-9 chr5 27549895 27550258 + 4 NA Intergenic L1PA13|LINE|L1 77784 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 509.5 chr1 108866071 108866229 + 4 NA Intergenic Intergenic -7906 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 705.5-3 chr13 68303347 68303696 + 4 NA Intergenic Intergenic 581804 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 819-4 chr2 15408007 15408427 + 4 NA intron (NR_052013, intron 25 of 50) intron (NR_052013, intron 25 of 50) 153117 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 897-6 chr6 109980576 109980879 + 4 NA TTS (NM_001286099) TTS (NM_001286099) 2416 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 506-24 chr6 61861992 61862239 + 4 NA intron (NM_001350622, intron 6 of 9) L1PA12|LINE|L1 287985 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 499-11 chr3 4210316 4210529 + 4 NA Intergenic L1M5|LINE|L1 -92882 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 592-11 chr3 75060584 75060771 + 4 NA Intergenic MER3|DNA|hAT-Charlie -153799 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 1101 chr2 76359566 76360013 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -626176 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 783-10 chr5 106567886 106568289 + 4 NA Intergenic Intergenic 442927 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 578.5-5 chr15 57849372 57849558 + 4 NA Intergenic MER45B|DNA|hAT-Tip100 142751 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 781.5-8 chr4 72762785 72763207 + 4 NA Intergenic Intergenic -193775 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 857-6 chr4 125343874 125344235 + 4 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 27642 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 1022.5 chr14 92082088 92082547 + 4 NA exon (NM_030660, exon 7 of 10) exon (NM_030660, exon 7 of 10) 24265 NM_004993 4287 Hs.532632 NM_004993 ENSG00000066427 ATXN3 AT3|ATX3|JOS|MJD|MJD1|SCA3 ataxin 3 protein-coding 685-5 chr17 74672793 74673138 + 4 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 1834 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 551-23 chr4 61379224 61379496 + 4 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 177188 NM_001371342 825-4 chr6 147757725 147758041 + 4 NA Intergenic Intergenic 249193 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 457-4 chr15 62201116 62201327 + 4 NA intron (NR_148210, intron 1 of 3) L1M4|LINE|L1 2097 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 1223 chr17 61733220 61733720 + 4 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 130089 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 621.5-5 chr2 205750744 205750985 + 4 NA intron (NM_018534, intron 11 of 15) intron (NM_018534, intron 11 of 15) 68363 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 1045 chr11 34986950 34987268 + 4 NA intron (NM_003477, intron 9 of 10) MIRb|SINE|MIR 45272 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 695-7 chr16 52919627 52919969 + 4 NA Intergenic Tigger4b|DNA|TcMar-Tigger 133075 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 729.5-4 chr5 12121521 12121755 + 4 NA Intergenic UCON105|Unknown|Unknown -217192 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 435-13 chr2 132969984 132970107 + 4 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 54488 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 528-33 chr8 112868770 112869069 + 4 NA intron (NM_001363185, intron 8 of 66) L1M3|LINE|L1 225426 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 470-29 chr4 65594401 65594576 + 4 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 75000 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 482-9 chr2 15743553 15743730 + 4 NA Intergenic L1MD2|LINE|L1 52859 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 657.5-6 chr2 66837730 66837932 + 4 NA Intergenic Intergenic -66605 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 615.5-7 chr22 20848890 20849172 + 4 NA intron (NM_058004, intron 1 of 54) L1MB8|LINE|L1 9780 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 555-10 chr19 47157933 47158091 + 4 NA intron (NM_005500, intron 5 of 8) intron (NM_005500, intron 5 of 8) 27177 NM_001145713 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 778-3 chr15 97454387 97454728 + 4 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 67254 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 701-7 chr5 52080282 52080491 + 4 NA Intergenic Intergenic 72355 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 842.5-4 chr2 111007738 111007995 + 4 NA intron (NM_001371254, intron 15 of 18) L1MC4a|LINE|L1 107722 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 633.5-3 chr11 73708556 73708846 + 4 NA intron (NM_198896, intron 5 of 7) intron (NM_198896, intron 5 of 7) 51392 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 564-2 chr10 44708017 44708251 + 4 NA Intergenic Intergenic -203182 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 997-4 chr9 95281909 95282271 + 4 NA intron (NM_001243744, intron 1 of 13) L1M1|LINE|L1 35164 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 772-12 chr8 118620708 118621108 + 4 NA promoter-TSS (NR_038210) promoter-TSS (NR_038210) -93 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 732.5-8 chr7 27876504 27876865 + 4 NA intron (NM_175061, intron 3 of 4) intron (NM_175061, intron 3 of 4) 136589 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 630.5-6 chr2 212569825 212570118 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR -31169 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 650-11 chr5 34580994 34581203 + 4 NA Intergenic L2a|LINE|L2 -75230 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 709-5 chr16 12963890 12964217 + 4 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 62455 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 885 chr13 62630009 62630273 + 4 NA Intergenic Intergenic 166551 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 538.5-4 chr12 15672879 15673074 + 4 NA intron (NM_004447, intron 3 of 20) intron (NM_004447, intron 3 of 20) 116412 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 856-7 chr5 26688297 26688560 + 4 NA Intergenic Intergenic 350158 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 758-7 chr7 34076339 34076577 + 4 NA intron (NM_133468, intron 12 of 15) L1ME4a|LINE|L1 170919 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 854-3 chr18 69304236 69304539 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -96501 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 560-3 chr13 83826525 83826797 + 4 NA Intergenic Intergenic 55732 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 510-26 chr9 115370556 115370721 + 4 NA intron (NR_163556, intron 4 of 7) MLT1J2|LTR|ERVL-MaLR 228820 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 729-4 chr2 52238067 52238306 + 4 NA intron (NR_135237, intron 7 of 10) Tigger4b|DNA|TcMar-Tigger -132462 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 766.5-5 chr2 115539932 115540280 + 4 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 196291 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 414-44 chr8 88691706 88691828 + 4 NA Intergenic Intergenic -364284 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 781-6 chr5 17182123 17182418 + 4 NA intron (NR_027253, intron 1 of 2) AluSx3|SINE|Alu -26278 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 794.5-6 chr9 76753333 76753671 + 4 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -10934 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 1107.5 chr1 41829486 41829862 + 4 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 89248 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 626-16 chr5 134212901 134213201 + 4 NA intron (NM_002715, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 12503 NR_149151 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 698-10 chr4 66005532 66005903 + 4 NA Intergenic L1MA5|LINE|L1 -271107 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 651.5-5 chr3 144723213 144723618 + 4 NA Intergenic Intergenic 750334 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 766-9 chr9 128948194 128948478 + 4 NA promoter-TSS (NM_014908) promoter-TSS (NM_014908) -603 NM_014908 22845 Hs.531563 NM_014908 ENSG00000175283 DOLK CDG1M|DK|DK1|SEC59|TMEM15 dolichol kinase protein-coding 634-5 chr14 40655472 40655787 + 4 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -299082 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 631-10 chr22 35184619 35184801 + 4 NA intron (NR_126356, intron 2 of 5) L1MEf|LINE|L1 46346 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 713.5-5 chr4 57929806 57930092 + 4 NA Intergenic Intergenic 504077 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 733-2 chr2 180693451 180693662 + 4 NA intron (NR_104323, intron 1 of 5) intron (NR_104323, intron 1 of 5) 1452 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 552-8 chr16 78165530 78165883 + 4 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 66052 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 927-2 chr16 11456558 11457027 + 4 NA intron (NM_001370704, intron 28 of 66) L2b|LINE|L2 -8468 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 860 chr11 11705736 11706019 + 4 NA Intergenic Intergenic -49155 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 840-2 chr19 46974553 46974828 + 4 NA intron (NM_004491, intron 3 of 6) MER21C|LTR|ERVL -45147 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 738-5 chr3 57930727 57931052 + 4 NA TTS (NM_001311178) TTS (NM_001311178) 40887 NM_001304422 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 705-8 chr5 176556076 176556468 + 4 NA intron (NM_017675, intron 1 of 31) FRAM|SINE|Alu 6930 NM_017675 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 305-2 chr1 74083972 74084074 + 4 NA intron (NM_001105659, intron 5 of 7) intron (NM_001105659, intron 5 of 7) 114153 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 977-2 chr3 120091417 120091917 + 4 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 2780 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 554.5-8 chr2 75937666 75937916 + 4 NA Intergenic L1P4|LINE|L1 -226876 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 508 chr1 236113527 236113730 + 4 NA Intergenic Intergenic -28911 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 570-3 chr11 125186370 125186608 + 4 NA intron (NM_022062, intron 1 of 12) AluJo|SINE|Alu 21738 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 724-6 chr18 4002005 4002265 + 4 NA intron (NR_102696, intron 4 of 4) L1M8|LINE|L1 39782 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 558.5-12 chr5 147781879 147782134 + 4 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 722 NM_001282282 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 991-2 chr2 176205491 176205965 + 4 NA Intergenic AluJo|SINE|Alu -16770 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 614.5-10 chr5 27345779 27346041 + 4 NA Intergenic AluJo|SINE|Alu -126382 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 822-2 chr1 174772754 174773158 + 4 NA intron (NM_001366451, intron 3 of 12) intron (NM_001366451, intron 3 of 12) -26782 NM_001243765 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 570.5-6 chr17 34198166 34198385 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger -14643 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 770-6 chr3 43331270 43331676 + 4 NA intron (NM_001100594, intron 2 of 5) L3|LINE|CR1 20489 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 516-9 chr14 22067018 22067220 + 4 NA Intergenic Intergenic 365634 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 691-3 chr14 77222054 77222420 + 4 NA intron (NM_020431, intron 5 of 23) L2|LINE|L2 40439 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 600-13 chr18 65016060 65016279 + 4 NA Intergenic Intergenic -734083 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 627.5-6 chr2 19984502 19984711 + 4 NA intron (NM_001006657, intron 2 of 27) intron (NM_001006657, intron 2 of 27) 5499 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 885.5 chr12 106411386 106411784 + 4 NA intron (NM_001160708, intron 12 of 27) L2a|LINE|L2 53503 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 600-7 chr11 81000589 81000763 + 4 NA Intergenic Intergenic -237873 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 550-10 chr17 77817157 77817369 + 4 NA Intergenic AluJb|SINE|Alu 66824 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 544-21 chr8 138146870 138147175 + 4 NA intron (NM_015912, intron 14 of 19) intron (NM_015912, intron 14 of 19) -63477 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 455-24 chr3 75181435 75181627 + 4 NA Intergenic L1MEg|LINE|L1 -32945 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 597-24 chr8 123787874 123788270 + 4 NA intron (NM_144963, intron 14 of 23) intron (NM_144963, intron 14 of 23) 19633 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 660-3 chr10 89579030 89579295 + 4 NA TTS (NM_148978) TTS (NM_148978) 13665 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 514 chr1 49036839 49037250 + 4 NA intron (NM_001323575, intron 5 of 12) L1PA4|LINE|L1 -220367 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 873-5 chr7 49583292 49583558 + 4 NA Intergenic LTR62|LTR|ERVL -190213 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 463.5-18 chr5 40134699 40134929 + 4 NA Intergenic MIR3|SINE|MIR 82523 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 582.5 chr1 76359458 76359809 + 4 NA intron (NM_001349111, intron 3 of 5) MLT1C|LTR|ERVL-MaLR 284887 NM_001349105 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 726.5 chr11 13081957 13082157 + 4 NA Intergenic Intergenic 72741 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 451.5 chr1 98040235 98040446 + 4 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 5011 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 597-11 chr18 54899167 54899564 + 4 NA Intergenic L1MA9|LINE|L1 58683 NM_001143829 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 875-3 chr4 54308557 54308813 + 4 NA Intergenic Intergenic -24207 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 369-24 chr20 21530237 21530333 + 4 NA Intergenic Intergenic -16221 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 335.5-8 chr14 48843840 48843994 + 4 NA Intergenic L1M5|LINE|L1 742463 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 664-6 chr5 113046468 113046644 + 4 NA intron (NM_001085377, intron 16 of 18) intron (NM_001085377, intron 16 of 18) 69758 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 561-10 chr18 6602768 6603058 + 4 NA Intergenic Intergenic 91497 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 364.5-5 chr12 87116754 87116962 + 4 NA Intergenic Intergenic -213881 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 615-9 chr2 116601297 116601570 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -1213258 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 957.5-5 chr6 80443344 80443853 + 4 NA Intergenic Intergenic 336927 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 715.5-4 chr18 69132710 69133134 + 4 NA Intergenic LTR8B|LTR|ERV1 -267966 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 1116.5 chr2 66563207 66563695 + 4 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -10579 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 481.5-5 chr11 83706910 83707105 + 4 NA intron (NM_001142699, intron 18 of 27) MIRc|SINE|MIR -24582 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 506.5-11 chr5 35466388 35466606 + 4 NA Intergenic Intergenic -151366 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 729.5 chr13 46809164 46809458 + 4 NA Intergenic MIR|SINE|MIR -12150 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 583-12 chr5 52298499 52298776 + 4 NA Intergenic Intergenic 290606 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 944.5 chr2 171682143 171682445 + 4 NA Intergenic Intergenic -5175 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 425-33 chr5 24633049 24633233 + 4 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 11837 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 592-13 chr6 154850003 154850234 + 4 NA Intergenic Intergenic -3242 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 502-15 chr4 90024174 90024352 + 4 NA Intergenic Intergenic -103270 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1123.5 chr20 21171870 21172233 + 4 NA intron (NM_018474, intron 6 of 12) MLT1H1|LTR|ERVL-MaLR 45969 NM_001352436 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 695-6 chr15 50694145 50694428 + 4 NA Intergenic AluSq2|SINE|Alu -7489 NM_017672 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 564-12 chr18 72808771 72809010 + 4 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 44492 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 583-19 chr9 6025366 6025602 + 4 NA Intergenic L1ME1|LINE|L1 -9860 NM_001243202 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 968.5-2 chr5 42272113 42272505 + 4 NA Intergenic MER5B|DNA|hAT-Charlie -96964 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 891-2 chr5 5692197 5692577 + 4 NA Intergenic Intergenic 269710 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 710-8 chr2 177441949 177442169 + 4 NA intron (NM_003659, intron 6 of 19) intron (NM_003659, intron 6 of 19) 49286 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 468-6 chr11 115490814 115491025 + 4 NA intron (NM_001098517, intron 1 of 8) MIRb|SINE|MIR 13496 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 502.5-5 chr13 98982914 98983163 + 4 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) -4974 NM_001366683 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 862.5-4 chr3 179676430 179676745 + 4 NA intron (NM_003940, intron 1 of 20) intron (NM_003940, intron 1 of 20) 23547 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 802-3 chr18 7588009 7588279 + 4 NA intron (NM_002845, intron 1 of 30) Charlie2a|DNA|hAT-Charlie 20828 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 1091 chr1 11871770 11872292 + 4 NA Intergenic LTR50|LTR|ERVL -13086 NM_002521 4879 Hs.219140 NM_002521 ENSG00000120937 NPPB BNP natriuretic peptide B protein-coding 777-6 chr3 128957292 128957519 + 4 NA intron (NM_001348520, intron 8 of 14) L1MDa|LINE|L1 34492 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 537.5-7 chr14 76016958 76017169 + 4 NA intron (NM_001102564, intron 2 of 8) L1M2|LINE|L1 31300 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 1168.5 chr2 224536805 224537419 + 4 NA intron (NM_001257197, intron 1 of 14) intron (NM_001257197, intron 1 of 14) 32843 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 950 chr6 69431363 69431722 + 4 NA Intergenic Intergenic 364924 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 1064-2 chr2 47113024 47113512 + 4 NA intron (NM_001163561, intron 5 of 6) intron (NM_001163561, intron 5 of 6) 42040 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 472-18 chr5 57879482 57879704 + 4 NA Intergenic (ACT)n|Simple_repeat|Simple_repeat 19569 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 567.5-2 chr12 27498021 27498235 + 4 NA intron (NM_001145010, intron 8 of 8) intron (NM_001145010, intron 8 of 8) -26078 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 659-10 chr4 83780767 83781256 + 4 NA Intergenic Intergenic 244903 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 1028 chr10 29082401 29083063 + 4 NA Intergenic Intergenic -206338 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 1116 chr4 30478528 30479075 + 4 NA Intergenic Intergenic -241568 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 259-20 chr4 65373905 65373998 + 4 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 295537 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 696-7 chr3 81177207 81177513 + 4 NA Intergenic MIR|SINE|MIR 183492 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 544 chr1 172381103 172381490 + 4 NA intron (NR_146559, intron 18 of 20) intron (NR_146559, intron 18 of 20) -39389 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 519.5-19 chr8 105909086 105909375 + 4 NA intron (NR_125796, intron 2 of 7) MLT1C|LTR|ERVL-MaLR 151273 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 732-6 chr2 126293781 126293972 + 4 NA Intergenic L1PA7|LINE|L1 -175891 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 801-3 chr15 91933495 91933755 + 4 NA intron (NR_135775, intron 2 of 10) MIR|SINE|MIR 79321 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 568 chr1 93855606 93855781 + 4 NA Intergenic AluSx|SINE|Alu -8474 NM_001261408 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 418-4 chr10 21435542 21435766 + 4 NA Intergenic Intergenic 60987 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 647.5-9 chr5 45489303 45489494 + 4 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 206982 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 729-3 chr18 67645939 67646205 + 4 NA intron (NR_033921, intron 1 of 4) L1PA16|LINE|L1 -129352 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 425.5-13 chr2 112582072 112582227 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger -2298 NR_163920 807-3 chr11 106075041 106075363 + 4 NA intron (NM_152433, intron 1 of 2) intron (NM_152433, intron 1 of 2) 2145 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 407.5-20 chr7 46586717 46586835 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR 110346 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 607-24 chr8 13201447 13201756 + 4 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -68312 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 462-20 chr2 175475287 175475439 + 4 NA Intergenic Intergenic -293653 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 830-7 chrX 46739087 46739445 + 4 NA intron (NM_001257291, intron 1 of 16) intron (NM_001257291, intron 1 of 16) 19852 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 756-7 chr18 8236999 8237330 + 4 NA intron (NM_002845, intron 14 of 30) L1MC1|LINE|L1 129870 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 838.5-8 chr8 87564302 87564600 + 4 NA Intergenic Intergenic 309564 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 453.5-7 chr14 60124758 60124903 + 4 NA exon (NM_022495, exon 8 of 10) exon (NM_022495, exon 8 of 10) 32907 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 669-8 chr14 54302454 54302700 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -94291 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 702 chr1 69030149 69030352 + 4 NA Intergenic L1MA4A|LINE|L1 -25648 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 856-3 chr18 13096019 13096369 + 4 NA exon (NM_032142, exon 36 of 45) exon (NM_032142, exon 36 of 45) 104832 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 304-28 chr4 39548843 39548989 + 4 NA 3' UTR (NM_001317897, exon 5 of 5) 3' UTR (NM_001317897, exon 5 of 5) 21077 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 555-27 chr6 135757063 135757323 + 4 NA Intergenic (CATA)n|Simple_repeat|Simple_repeat -94508 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 597-6 chr14 69983168 69983397 + 4 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 5149 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 650-2 chr10 19327045 19327234 + 4 NA intron (NM_001142308, intron 22 of 39) intron (NM_001142308, intron 22 of 39) 278338 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 434-16 chr4 145911336 145911478 + 4 NA intron (NM_178835, intron 1 of 14) intron (NM_178835, intron 1 of 14) 27416 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 542-2 chr1 212279144 212279368 + 4 NA intron (NR_125984, intron 1 of 3) L1MA9|LINE|L1 5765 NR_125984 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 454.5-8 chr2 35797412 35797533 + 4 NA Intergenic Intergenic 326067 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 759-4 chr2 217274731 217274966 + 4 NA Intergenic Intergenic -7885 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 916-2 chr14 58153940 58154266 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -1890 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 764-3 chr2 59244427 59244825 + 4 NA intron (NR_110219, intron 1 of 2) intron (NR_110219, intron 1 of 2) 26918 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 767.5-8 chr9 79834349 79834628 + 4 NA intron (NR_121213, intron 1 of 2) MSTB1-int|LTR|ERVL-MaLR 9958 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1132.5 chr6 165556162 165556523 + 4 NA intron (NM_001130690, intron 1 of 21) intron (NM_001130690, intron 1 of 21) 105758 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 980-3 chr4 126108703 126109080 + 4 NA Intergenic Intergenic 601632 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 771-9 chr8 74483272 74483492 + 4 NA intron (NM_001362931, intron 5 of 5) MADE1|DNA|TcMar-Mariner -65161 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 937 chr16 11660230 11660480 + 4 NA Intergenic AluJr|SINE|Alu -8100 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 493-8 chr15 24713584 24713803 + 4 NA Intergenic Intergenic 38299 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 418-35 chr9 33989040 33989162 + 4 NA exon (NM_018449, exon 5 of 29) exon (NM_018449, exon 5 of 29) -36247 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 955 chr4 123529113 123529652 + 4 NA Intergenic Intergenic -120609 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 703.5-5 chr4 75172115 75172410 + 4 NA Intergenic Intergenic -87554 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 561.5-3 chr13 103673958 103674188 + 4 NA Intergenic Intergenic 248873 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1097.5 chr5 41788086 41788498 + 4 NA intron (NR_157114, intron 12 of 15) L1MEc|LINE|L1 55365 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 953-2 chr2 150285268 150285716 + 4 NA Intergenic MIRb|SINE|MIR -28485 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 1104.5 chr6 107556464 107556949 + 4 NA intron (NM_018013, intron 4 of 6) intron (NM_018013, intron 4 of 6) 66589 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 556-14 chr7 101727907 101728151 + 4 NA Intergenic AluJr|SINE|Alu -87978 NM_001913 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 1052-3 chr2 74403331 74403952 + 4 NA Intergenic AluJr|SINE|Alu -11554 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 556-4 chr11 42508422 42508618 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger -254830 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 745.5-7 chr17 77146259 77146640 + 4 NA intron (NM_001143999, intron 3 of 16) intron (NM_001143999, intron 3 of 16) 5480 NM_001143999 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 640.5-8 chr2 181654035 181654320 + 4 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 2928 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 796 chr12 122879356 122879584 + 4 NA intron (NM_024667, intron 1 of 3) LTR33|LTR|ERVL 16654 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 728.5-8 chr6 119641801 119642038 + 4 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 92111 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 906-4 chr5 87885736 87886078 + 4 NA Intergenic Intergenic 223865 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 709 chr1 17361478 17361878 + 4 NA intron (NM_012387, intron 15 of 15).2 MIRb|SINE|MIR -10518 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 575-15 chr8 19290349 19290543 + 4 NA Intergenic Intergenic -23124 NM_001363110 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 694.5-2 chr4 45133164 45133476 + 4 NA Intergenic L1ME3F|LINE|L1 -406686 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 386-7 chr10 81152151 81152309 + 4 NA Intergenic L1M4a1|LINE|L1 502433 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 577.5-15 chr20 31459594 31459764 + 4 NA Intergenic Intergenic 13334 NM_001037500 245937 Hs.381373 NM_001037500 ENSG00000180383 DEFB124 DEFB-24 defensin beta 124 protein-coding 824-7 chr9 76140081 76140468 + 4 NA intron (NM_006200, intron 10 of 20) intron (NM_006200, intron 10 of 20) 249601 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 464-3 chr10 98577116 98577286 + 4 NA intron (NM_021828, intron 9 of 11) MER110A|LTR|ERV1 -130238 NM_001322477 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 533-7 chr11 115725276 115725489 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR 9380 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 684.5 chr11 79430595 79430901 + 4 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR -8522 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 453-27 chr7 15719309 15719515 + 4 NA Intergenic Intergenic 31034 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 705 chr1 177214465 177214752 + 4 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 43650 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 479.5-17 chr7 94234148 94234399 + 4 NA Intergenic L1MEg|LINE|L1 157919 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 562-2 chr14 60397185 60397413 + 4 NA Intergenic Intergenic 74103 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 785 chr1 151227991 151228283 + 4 NA intron (NM_001135637, intron 3 of 13) AluJr4|SINE|Alu -26597 NM_002810 5710 Hs.505059 NM_002810 ENSG00000159352 PSMD4 AF|AF-1|ASF|MCB1|Rpn10|S5A|pUB-R5 proteasome 26S subunit, non-ATPase 4 protein-coding 998-3 chr6 132106175 132106616 + 4 NA Intergenic Intergenic 8868 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 443-8 chr11 18749270 18749383 + 4 NA intron (NM_001278236, intron 3 of 14) MIRb|SINE|MIR -23138 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 898.5-2 chr2 81799427 81800384 + 4 NA Intergenic Intergenic -332959 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 561-19 chr4 52609098 52609337 + 4 NA intron (NM_001286768, intron 6 of 9) intron (NM_001286768, intron 6 of 9) 47322 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 537-9 chr17 64717490 64717678 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -55277 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 890-7 chr6 168155181 168155573 + 4 NA Intergenic Intergenic 71140 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 354-19 chr20 41593591 41593722 + 4 NA intron (NM_032221, intron 1 of 36) MLT1B|LTR|ERVL-MaLR 24721 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 922-2 chr7 7786002 7786504 + 4 NA intron (NM_001302350, intron 3 of 4) L1MC4|LINE|L1 -67646 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 1035-4 chr5 135636269 135636795 + 4 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 17403 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 685-4 chr15 58068659 58068956 + 4 NA intron (NR_147215, intron 2 of 2) AluSq2|SINE|Alu -2884 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 929.5-2 chr5 88407101 88407437 + 4 NA intron (NR_105020, intron 1 of 2) L1ME1|LINE|L1 15074 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 543.5-8 chr2 25171791 25171973 + 4 NA Intergenic L1M5|LINE|L1 -3031 NM_001035256 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 642-7 chr2 134644055 134644329 + 4 NA intron (NM_030923, intron 2 of 7) L1ME1|LINE|L1 74808 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 360-32 chr3 132574426 132574575 + 4 NA intron (NR_132427, intron 15 of 17) intron (NR_132427, intron 15 of 17) -22770 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 590.5-12 chr2 57641773 57642083 + 4 NA Intergenic Intergenic -265723 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 424-17 chr4 97224090 97224313 + 4 NA Intergenic Intergenic -142725 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 667.5-4 chr7 6567359 6567632 + 4 NA Intergenic AluSz|SINE|Alu -9939 NM_001134388 55146 Hs.5268 NM_018106 ENSG00000136247 ZDHHC4 ZNF374 zinc finger DHHC-type containing 4 protein-coding 542.5-27 chr8 117985679 117986077 + 4 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -64965 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 432-25 chr6 80280375 80280522 + 4 NA intron (NR_134945, intron 10 of 10) Tigger3d|DNA|TcMar-Tigger 173777 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 481-5 chr12 58798642 58798828 + 4 NA intron (NR_126341, intron 1 of 1) L1PA8|LINE|L1 -17019 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 915-2 chr13 29979241 29979660 + 4 NA Intergenic Intergenic 42919 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 692-8 chr3 78059760 78060000 + 4 NA Intergenic Intergenic -10917 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 728-11 chr8 122589603 122589873 + 4 NA Intergenic L2b|LINE|L2 -21094 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 404.5 chr1 10105708 10105848 + 4 NA intron (NM_006048, intron 6 of 26) intron (NM_006048, intron 6 of 26) 72820 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 252-34 chrX 53128518 53128624 + 4 NA intron (NR_145974, intron 2 of 2) L1MEd|LINE|L1 34414 NR_110456 102723508 Hs.633244 NR_110456 KANTR LINC01155|Spasm KDM5C adjacent transcript ncRNA 825.5 chr1 46059642 46059994 + 4 NA intron (NR_137329, intron 5 of 8) AluSx|SINE|Alu 70855 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 527-17 chr2 217769601 217769773 + 4 NA Intergenic L1ME1|LINE|L1 -13094 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 604.5-10 chr4 79264211 79264444 + 4 NA intron (NR_038342, intron 4 of 5) L2a|LINE|L2 61734 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 535-13 chr2 45384114 45384276 + 4 NA Intergenic AluSc|SINE|Alu -129254 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 642-9 chr4 21876417 21876594 + 4 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) -23317 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 679-15 chr7 41727832 41728242 + 4 NA intron (NR_027118, intron 2 of 3) MLT1J|LTR|ERVL-MaLR -24947 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 841.5 chr8 132851030 132851614 + 4 NA Intergenic L1MC|LINE|L1 -15636 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 664.5-2 chr1 113178538 113178849 + 4 NA Intergenic L1PA17|LINE|L1 27560 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 784-2 chr2 76828596 76828915 + 4 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -157210 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 337-19 chr3 133360609 133360704 + 4 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -39400 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 1167 chr13 80476447 80476996 + 4 NA Intergenic Intergenic -135595 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 438-23 chr3 87004294 87004409 + 4 NA Intergenic Intergenic -13202 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 631-6 chr17 51213179 51213366 + 4 NA intron (NM_017643, intron 6 of 16) AluJb|SINE|Alu 46550 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 464-15 chr2 223711733 223711881 + 4 NA Intergenic Intergenic -109446 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 522 chr1 55409219 55409371 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR 183654 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 928-2 chr10 75636201 75636465 + 4 NA intron (NM_001305581, intron 2 of 6) MIRb|SINE|MIR -11176 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 473-12 chr2 64689141 64689373 + 4 NA Intergenic Intergenic -35344 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 771.5-2 chr3 196962983 196963395 + 4 NA intron (NM_025163, intron 1 of 2) L1MB7|LINE|L1 5644 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 600-12 chr18 11699028 11699231 + 4 NA intron (NM_182978, intron 1 of 11) intron (NM_182978, intron 1 of 11) 9865 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 1016 chr18 64503296 64503649 + 4 NA Intergenic L2a|LINE|L2 -243417 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 441-29 chr4 41296869 41297000 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 40006 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 626.5-10 chrX 44577654 44578062 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -34999 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 833.5 chr1 239298169 239298440 + 4 NA Intergenic Intergenic -88264 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 703.5-3 chr17 60291768 60292179 + 4 NA intron (NM_032582, intron 4 of 33) L2a|LINE|L2 -60328 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 997-2 chr7 46546543 46547030 + 4 NA Intergenic Intergenic 150336 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 673.5-4 chr15 78027852 78028038 + 4 NA intron (NM_144572, intron 4 of 12) intron (NM_144572, intron 4 of 12) -33720 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 669.5-11 chr8 106300047 106300322 + 4 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 30006 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 577-10 chr7 86555691 86555883 + 4 NA Intergenic L1ME1|LINE|L1 -88122 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 702.5-3 chr21 20525415 20525779 + 4 NA Intergenic L1ME4a|LINE|L1 -266912 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 836-4 chr20 58814434 58814720 + 4 NA Intergenic L1MC3|LINE|L1 3117 NR_029844 407022 NR_029844 ENSG00000284040 MIR296 MIRN296|miRNA296|mir-296 microRNA 296 ncRNA 484-30 chr6 51540103 51540293 + 4 NA Intergenic Intergenic -81672 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 1222-2 chr2 57139209 57139764 + 4 NA Intergenic Intergenic -768165 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 336-43 chr4 137716953 137717122 + 4 NA Intergenic Intergenic 171306 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 568-17 chr8 87065088 87065355 + 4 NA intron (NM_173538, intron 4 of 10) L1MEg|LINE|L1 198806 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 338-6 chr11 64055778 64055911 + 4 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) -48046 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding 577.5-5 chr10 88561222 88561401 + 4 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 22007 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 1122 chr8 113181502 113181905 + 4 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 195449 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 471.5-7 chr11 37883314 37883675 + 4 NA Intergenic Intergenic -55107 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 320-25 chr6 51747047 51747161 + 4 NA intron (NM_138694, intron 58 of 66) intron (NM_138694, intron 58 of 66) 125234 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 638-2 chr10 44069606 44069923 + 4 NA Intergenic L1MB3|LINE|L1 157362 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 943-6 chr8 50346935 50347349 + 4 NA intron (NR_135797, intron 2 of 20) Tigger1|DNA|TcMar-Tigger 183011 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 408.5-9 chr18 12994583 12994758 + 4 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 3308 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 862-8 chr7 39221716 39221952 + 4 NA intron (NM_001370959, intron 4 of 9) L1ME3Cz|LINE|L1 107300 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 771-5 chr12 105999529 105999973 + 4 NA Intergenic Intergenic 140282 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 1020.5 chr13 44293669 44294090 + 4 NA Intergenic Intergenic -79771 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 356.5-15 chr14 50475082 50475253 + 4 NA intron (NM_198794, intron 8 of 31) intron (NM_198794, intron 8 of 31) 57402 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 526.5-4 chr11 56603305 56603742 + 4 NA Intergenic Intergenic 9979 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 529.5-20 chr6 53393204 53393438 + 4 NA Intergenic L1MA10|LINE|L1 -44142 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 747.5-2 chr12 2266392 2266811 + 4 NA intron (NM_199460, intron 3 of 49).2 MIRc|SINE|MIR -3175 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 540-8 chr12 10008521 10008770 + 4 NA Intergenic Intergenic -1982 NM_205852 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 547.5-6 chr22 24709543 24709805 + 4 NA Intergenic L1MB1|LINE|L1 -50527 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 892-4 chr8 129046975 129047272 + 4 NA Intergenic L1MA8|LINE|L1 -81122 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 614-10 chr3 118796160 118796446 + 4 NA intron (NR_135547, intron 1 of 3) L3|LINE|CR1 14530 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 406-13 chr2 168990709 168990865 + 4 NA intron (NM_003742, intron 9 of 27) intron (NM_003742, intron 9 of 27) 40537 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 436.5-15 chr7 7082364 7082578 + 4 NA non-coding (NR_034022, exon 1 of 1) non-coding (NR_034022, exon 1 of 1) 14315 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 520-17 chr2 204017371 204017638 + 4 NA Intergenic Intergenic 80756 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 404-24 chr2 240072806 240072954 + 4 NA Intergenic Intergenic -26808 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 509.5-12 chr5 171388276 171388417 + 4 NA intron (NM_001355010, intron 1 of 6) CpG 497 NM_001355009 4869 Hs.557550 NM_002520 ENSG00000181163 NPM1 B23|NPM nucleophosmin 1 protein-coding 865 chr1 19011339 19011603 + 4 NA Intergenic MIRc|SINE|MIR -54795 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 659-13 chr6 45650751 45651011 + 4 NA Intergenic Intergenic 228606 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 838.5 chr14 40132693 40132953 + 4 NA Intergenic Intergenic -700323 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 823-2 chr2 148529545 148529935 + 4 NA Intergenic Intergenic -115011 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 551-7 chr10 116898805 116899076 + 4 NA intron (NM_018330, intron 14 of 14) intron (NM_018330, intron 14 of 14) -49218 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 619-8 chr2 137277528 137277787 + 4 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 512112 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 839-6 chr7 1778786 1779045 + 4 NA Intergenic AluJb|SINE|Alu -36605 NR_120509 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 739-8 chr5 27603240 27603496 + 4 NA Intergenic L1ME2|LINE|L1 131076 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 849-2 chr18 41580903 41581130 + 4 NA Intergenic Tigger20a|DNA|TcMar-Tigger -60339 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 734-5 chr5 19819052 19819320 + 4 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 67086 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 443-24 chr21 31185259 31185448 + 4 NA intron (NM_001353686, intron 14 of 27) intron (NM_001353686, intron 14 of 27) -24413 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 681-13 chrUn_KI270466v1 907 1198 + 4 NA NA SAR|Satellite|Satellite NA NA 425.5-23 chr9 38447552 38447743 + 4 NA Intergenic L1MA6|LINE|L1 -23193 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 575-11 chr4 31301482 31301698 + 4 NA Intergenic Intergenic 130446 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 1242.5 chr2 131410042 131410418 + 4 NA Intergenic L1MB4|LINE|L1 7329 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 389-26 chr21 17019278 17019471 + 4 NA Intergenic L1MC3|LINE|L1 -419516 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 609-10 chr22 30734320 30734601 + 4 NA intron (NM_030758, intron 1 of 13) intron (NM_030758, intron 1 of 13) 2903 NR_036171 100422912 NR_036171 ENSG00000264661 MIR3200 mir-3200 microRNA 3200 ncRNA 656-14 chr9 28682897 28683239 + 4 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 36237 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 521.5-10 chr8 81393833 81394009 + 4 NA Intergenic Intergenic 53518 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 630.5-5 chr15 64274589 64274836 + 4 NA intron (NM_001329607, intron 2 of 11) intron (NM_001329607, intron 2 of 11) 81461 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 634.5-7 chr2 98321611 98321878 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -24411 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 761-3 chr14 101874975 101875384 + 4 NA intron (NM_001161725, intron 4 of 15) intron (NM_001161725, intron 4 of 15) 65316 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 618-10 chr2 33416836 33417150 + 4 NA Intergenic L3|LINE|CR1 -1523 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 650-13 chr6 91445343 91445716 + 4 NA Intergenic AluJb|SINE|Alu -76131 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 555-26 chr6 124951851 124952111 + 4 NA intron (NR_026876, intron 1 of 6) intron (NR_026876, intron 1 of 6) -10564 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 836.5-2 chr12 52990269 52990685 + 4 NA Intergenic Intergenic -15979 NM_001330654 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 627-7 chr2 20289477 20289736 + 4 NA intron (NM_001282790, intron 9 of 18) intron (NM_001282790, intron 9 of 18) 37780 NM_001282791 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 657-3 chr17 74726630 74726860 + 4 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) -9815 NM_001330471 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 422.5-3 chr11 100949379 100949516 + 4 NA intron (NM_001367945, intron 13 of 25) MER5C|DNA|hAT-Charlie 15173 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 490-14 chr2 35035137 35035301 + 4 NA Intergenic MER52A|LTR|ERV1 357662 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 753-3 chr12 102478932 102479247 + 4 NA promoter-TSS (NM_001111284) promoter-TSS (NM_001111284) -539 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 702-5 chr3 106558901 106559098 + 4 NA Intergenic L1MEc|LINE|L1 681639 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 829 chr10 13748200 13748580 + 4 NA intron (NM_001318336, intron 7 of 23) Tigger4a|DNA|TcMar-Tigger -40823 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 778.5-2 chr14 43875303 43875781 + 4 NA Intergenic MER66C|LTR|ERV1 631741 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 915.5-2 chr6 4984248 4984961 + 4 NA Intergenic AluY|SINE|Alu -19212 NR_126015 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 345 chr1 59390111 59390261 + 4 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 80154 NM_001350794 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 1357 chr9 37334102 37334796 + 4 NA intron (NR_110317, intron 5 of 7) intron (NR_110317, intron 5 of 7) -88247 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 849.5 chrX 9779846 9780337 + 4 NA Intergenic Intergenic -6338 NM_001649 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 704-6 chr2 123153453 123153664 + 4 NA Intergenic Intergenic -80077 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1125 chr12 9157098 9157439 + 4 NA exon (NM_002864, exon 28 of 36) exon (NM_002864, exon 28 of 36) -41039 NM_001347423 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 648-2 chr11 124350453 124350691 + 4 NA Intergenic L1MA5|LINE|L1 -30375 NM_001002918 283160 Hs.504212 NM_001002918 ENSG00000279116 OR8D2 JCG2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding 826.5-5 chr8 121806127 121806385 + 4 NA Intergenic Intergenic -164816 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 942-2 chr12 110505123 110505653 + 4 NA intron (NM_152442, intron 2 of 11) intron (NM_152442, intron 2 of 11) 3057 NM_001368051 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 694-4 chr18 14036368 14036558 + 4 NA Intergenic Intergenic 95972 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 803-8 chr3 83381140 83381424 + 4 NA Intergenic Intergenic 1395140 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 449-26 chr5 156575699 156575908 + 4 NA intron (NM_001128209, intron 3 of 7) MER103C|DNA|hAT-Charlie 248639 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 548-13 chr2 164191945 164192125 + 4 NA Intergenic Intergenic 376460 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 475.5-16 chr6 125312665 125312821 + 4 NA Intergenic Intergenic -10776 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 621-9 chr2 103512488 103512666 + 4 NA Intergenic L1ME1|LINE|L1 -528148 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 1189 chr12 14519669 14520198 + 4 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -47799 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 987 chr16 17661273 17661692 + 4 NA Intergenic MIRb|SINE|MIR -190522 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 556.5-6 chr14 56884180 56884404 + 4 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 71134 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 662-10 chr7 122800246 122800501 + 4 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 86087 NM_001363399 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 910-2 chr3 28925122 28925535 + 4 NA Intergenic Intergenic 350050 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 529.5-17 chr4 120516535 120516715 + 4 NA Intergenic L2a|LINE|L2 406241 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 1080 chr5 58880693 58880986 + 4 NA Intergenic L2b|LINE|L2 119059 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 824-4 chr4 49022395 49022720 + 4 NA intron (NM_001286791, intron 9 of 15) L1PB1|LINE|L1 35915 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 456-6 chr10 35386450 35386618 + 4 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 49660 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 674.5-7 chr3 67380291 67380506 + 4 NA intron (NM_003848, intron 10 of 10) intron (NM_003848, intron 10 of 10) 154934 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 883.5-3 chr5 115659487 115659818 + 4 NA intron (NR_104674, intron 3 of 4) L1ME3|LINE|L1 13000 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 962 chr14 51913716 51914165 + 4 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 4631 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 573-9 chr2 64811487 64811635 + 4 NA Intergenic Intergenic 52070 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 409-11 chr2 28095206 28095418 + 4 NA intron (NM_199193, intron 7 of 13) L2b|LINE|L2 98945 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 658-5 chr16 80306386 80306613 + 4 NA intron (NR_120307, intron 2 of 5) MER4D|LTR|ERV1 -234235 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 728-7 chr6 99050356 99050582 + 4 NA Intergenic Intergenic -74140 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 688.5-3 chr14 80830712 80830921 + 4 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 110922 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 712-6 chr4 56895151 56895432 + 4 NA Intergenic Intergenic -12609 NM_005612 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 559-2 chr10 50620605 50620811 + 4 NA intron (NM_147156, intron 1 of 10) intron (NM_147156, intron 1 of 10) 3248 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 851 chr14 78648969 78649291 + 4 NA intron (NR_073547, intron 5 of 20) intron (NR_073547, intron 5 of 20) 245411 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 668-9 chr2 234539938 234540202 + 4 NA Intergenic L2|LINE|L2 -42989 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 880-3 chr7 107832514 107832841 + 4 NA Intergenic L2c|LINE|L2 -29444 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 788-8 chr5 91826989 91827307 + 4 NA Intergenic Intergenic -443831 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 419-4 chr1 64179684 64179815 + 4 NA 3' UTR (NM_005012, exon 9 of 9) 3' UTR (NM_005012, exon 9 of 9) -23874 NM_001366233 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 474.5-11 chr6 36525395 36525573 + 4 NA intron (NM_007271, intron 3 of 13) intron (NM_007271, intron 3 of 13) 21995 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 412-5 chr10 77606154 77606347 + 4 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 31558 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 801-11 chr8 95284010 95284249 + 4 NA intron (NR_038206, intron 1 of 4) L1ME3A|LINE|L1 -14928 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 604-7 chr12 22521058 22521366 + 4 NA intron (NM_001286173, intron 7 of 27) intron (NM_001286173, intron 7 of 27) 22985 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 952-2 chr2 103512833 103513125 + 4 NA Intergenic L1ME1|LINE|L1 -528550 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 535.5-10 chr20 6248682 6248861 + 4 NA Intergenic L1MCa|LINE|L1 -125227 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 737.5-5 chr4 113528244 113528592 + 4 NA intron (NM_001221, intron 8 of 18) MIR|SINE|MIR 233320 NM_001321586 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 613-4 chr15 41422569 41422786 + 4 NA intron (NM_015138, intron 1 of 17) intron (NM_015138, intron 1 of 17) 5573 NM_015138 23168 Hs.511096 NM_015138 ENSG00000137815 RTF1 GTL7|KIAA0252 RTF1 homolog, Paf1/RNA polymerase II complex component protein-coding 752-5 chr3 8104154 8104366 + 4 NA Intergenic Intergenic -87953 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 444-23 chr5 110165776 110165908 + 4 NA Intergenic L1ME1|LINE|L1 282660 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 705.5 chr1 43729961 43730212 + 4 NA intron (NM_001270459, intron 1 of 11) L3|LINE|CR1 -2743 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 542-4 chr11 32813955 32814159 + 4 NA Intergenic L1ME4a|LINE|L1 -15870 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 1323.5 chr10 43755135 43755877 + 4 NA Intergenic L1M7|LINE|L1 23319 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 367.5-36 chr7 47970823 47970991 + 4 NA intron (NM_004507, intron 5 of 7) L1M8|LINE|L1 8708 NM_001363683 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 1159 chr5 163789463 163790273 + 4 NA Intergenic L1MA4|LINE|L1 284249 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 672-8 chr18 56144273 56144508 + 4 NA intron (NR_148972, intron 3 of 8) intron (NR_148972, intron 3 of 8) -6854 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 724-10 chr5 35071436 35071811 + 4 NA intron (NR_037910, intron 4 of 7) AluSq2|SINE|Alu -23674 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 371.5-18 chr2 185912260 185912395 + 4 NA Intergenic Intergenic -112176 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 418.5-9 chr12 73999859 74000044 + 4 NA Intergenic Intergenic 292680 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 1010-2 chr16 74681271 74681694 + 4 NA intron (NM_152649, intron 6 of 10) intron (NM_152649, intron 6 of 10) -14605 NM_001370542 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 732.5 chr10 13738775 13738980 + 4 NA intron (NM_001318336, intron 10 of 23) AluSx|SINE|Alu -31310 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 583-3 chr12 57489686 57489936 + 4 NA promoter-TSS (NM_001319850) promoter-TSS (NM_001319850) -987 NM_001319850 64333 Hs.437126 NM_032496 ENSG00000123329 ARHGAP9 10C|RGL1 Rho GTPase activating protein 9 protein-coding 557.5-10 chr2 201563869 201564304 + 4 NA intron (NM_001168221, intron 9 of 15) MER96|DNA|hAT-Tip100 55092 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 647-12 chr22 35489663 35490128 + 4 NA Intergenic MIR|SINE|MIR -50599 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 656-6 chr18 5360687 5361009 + 4 NA Intergenic MER104|DNA|TcMar-Tc2 -63795 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 834.5 chr1 35281717 35282109 + 4 NA intron (NM_005095, intron 1 of 29) L1MB4|LINE|L1 13204 NM_001350138 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 426.5-14 chr2 139003030 139003246 + 4 NA Intergenic Intergenic 105814 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 672-7 chr17 72205329 72205504 + 4 NA Intergenic Intergenic 84396 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 691-7 chr3 99632223 99632402 + 4 NA Intergenic Intergenic -6282 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 1387 chr3 113813618 113814179 + 4 NA Intergenic Intergenic -24890 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 925.5 chr10 25285840 25286244 + 4 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -109766 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 425-17 chr13 60511692 60511857 + 4 NA intron (NM_030794, intron 10 of 13) MLT1E1A|LTR|ERVL-MaLR 114554 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 674-11 chrX 8320029 8320345 + 4 NA Intergenic Intergenic -144643 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 491-27 chr7 92274621 92274859 + 4 NA intron (NM_019004, intron 1 of 19) AluJb|SINE|Alu -28640 NM_001350689 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 774-6 chr8 120877235 120877634 + 4 NA Intergenic L1MA7|LINE|L1 -65388 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 767 chr10 106688736 106688988 + 4 NA intron (NM_001206569, intron 9 of 25) MIRb|SINE|MIR 475844 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 539-4 chr1 190808016 190808241 + 4 NA Intergenic Intergenic 183238 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 366-3 chr12 74372909 74373071 + 4 NA Intergenic L1MEd|LINE|L1 -80359 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 652-6 chr2 9763798 9764027 + 4 NA Intergenic Plat_L3|LINE|CR1 -79530 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 642-4 chr19 30240830 30241035 + 4 NA Intergenic L2a|LINE|L2 -131452 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 342.5-9 chr13 58931467 58931573 + 4 NA Intergenic Intergenic -698403 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 586.5-17 chr8 129070856 129071035 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -104944 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 776.5-2 chr18 7882968 7883272 + 4 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 315804 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 640-4 chr3 125202026 125202325 + 4 NA intron (NM_001195483, intron 1 of 12) AluSx1|SINE|Alu 9224 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 862-5 chr21 29988173 29988441 + 4 NA Intergenic L1MD2|LINE|L1 -48255 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 607.5-18 chrX 54286938 54287167 + 4 NA intron (NM_001002838, intron 10 of 22) MIR|SINE|MIR 70953 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 554.5 chr1 12692707 12692860 + 4 NA Intergenic LTR102_Mam|LTR|ERVL -23327 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 640-9 chr5 118230396 118230627 + 4 NA intron (NR_104997, intron 2 of 2) L2a|LINE|L2 -52063 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 787-4 chr3 5657921 5658391 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -407901 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 939-3 chr19 36947196 36947510 + 4 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 31021 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 586-18 chr8 81305744 81305968 + 4 NA Intergenic Intergenic 25320 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 937.5-2 chr5 59490166 59490675 + 4 NA intron (NM_001349242, intron 1 of 16) MIRb|SINE|MIR 96078 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 468.5-12 chr7 2098562 2098755 + 4 NA intron (NM_001013837, intron 11 of 18) intron (NM_001013837, intron 11 of 18) -9606 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 639-5 chr16 79085260 79085586 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 515314 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 876-3 chr5 133269835 133270228 + 4 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 157675 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 596.5-10 chr8 28566243 28566546 + 4 NA 3' UTR (NM_145866, exon 7 of 7) 3' UTR (NM_145866, exon 7 of 7) -61212 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 906.5 chr12 14216350 14216611 + 4 NA Intergenic Intergenic -149152 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 578-11 chr16 25734879 25735062 + 4 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 43011 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 422-33 chr8 135288577 135288765 + 4 NA intron (NR_120395, intron 2 of 5) MIRb|SINE|MIR 54540 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 570-14 chr2 12537295 12537556 + 4 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -179447 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 720 chr1 118493117 118493460 + 4 NA Intergenic L1MDa|LINE|L1 -308060 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 554-18 chr3 79522279 79522569 + 4 NA intron (NM_002941, intron 2 of 30) L2c|LINE|L2 14537 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 681.5-4 chr3 174020630 174020845 + 4 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -99941 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 1090-2 chr7 52130905 52131241 + 4 NA Intergenic L1MB7|LINE|L1 -737817 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1014.5 chr18 66479716 66480038 + 4 NA Intergenic Intergenic 124213 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 908 chr1 8492334 8492737 + 4 NA intron (NM_001042681, intron 10 of 22) AluJb|SINE|Alu 2378 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 626 chr1 112733228 112733498 + 4 NA Intergenic Intergenic 12796 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 374-30 chr5 78257867 78257994 + 4 NA intron (NM_003664, intron 2 of 26) L1MA1|LINE|L1 36768 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 755-7 chr6 68033057 68033301 + 4 NA Intergenic Intergenic -22172 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 480-35 chrX 71304859 71305096 + 4 NA exon (NM_001303277, exon 8 of 8) exon (NM_001303277, exon 8 of 8) 3227 NM_012278 26548 Hs.109999 NM_012278 ENSG00000147166 ITGB1BP2 CHORDC3|ITGB1BP|MELUSIN|MSTP015 integrin subunit beta 1 binding protein 2 protein-coding 754.5-2 chr17 29751046 29751546 + 4 NA intron (NM_033389, intron 2 of 14) AluSp|SINE|Alu 10136 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 986-3 chr13 39599779 39600119 + 4 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 3244 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 507-34 chr9 28664052 28664210 + 4 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 55174 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 581.5-2 chr10 84674397 84674589 + 4 NA Intergenic MSTB1|LTR|ERVL-MaLR 249324 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 440-32 chr5 122200280 122200503 + 4 NA Intergenic Intergenic 40215 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 716-8 chr9 35935338 35935652 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger 22659 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 947 chr5 8376423 8376702 + 4 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 81002 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 791 chr10 62777095 62777456 + 4 NA Intergenic MARNA|DNA|TcMar-Mariner -27445 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 511-10 chr18 59644746 59644939 + 4 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 52581 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 660.5-7 chr4 20709421 20709662 + 4 NA intron (NR_047661, intron 4 of 7) intron (NR_047661, intron 4 of 7) 9083 NR_047661 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 1007.5 chr2 155682323 155682819 + 4 NA Intergenic Intergenic 572360 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 712.5-2 chr15 57189523 57189871 + 4 NA intron (NM_001322154, intron 6 of 20) L1MB5|LINE|L1 -29733 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 850-7 chr5 134720897 134721224 + 4 NA exon (NM_021982, exon 21 of 23) exon (NM_021982, exon 21 of 23) -17488 NM_001745 819 Hs.529846 NM_001745 ENSG00000164615 CAMLG CAML|GET2 calcium modulating ligand protein-coding 525-15 chr20 47254183 47254397 + 4 NA intron (NM_001281784, intron 11 of 20) L1ME4b|LINE|L1 -64212 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 404-32 chr7 48312785 48312906 + 4 NA intron (NM_152701, intron 24 of 61) intron (NM_152701, intron 24 of 61) 141387 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 806-4 chr17 48218740 48219136 + 4 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -62427 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 508-13 chr20 32591933 32592077 + 4 NA intron (NR_034152, intron 1 of 2) intron (NR_034152, intron 1 of 2) 4526 NR_034152 149950 Hs.516980 NM_001010976 ENSG00000204393 NOL4L-DT - NOL4L divergent transcript ncRNA 681 chr3 73177197 73177396 + 4 NA Intergenic (CTCTCT)n|Simple_repeat|Simple_repeat 115637 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 830-2 chr13 100359796 100360145 + 4 NA intron (NR_148031, intron 18 of 22) L1ME2|LINE|L1 121045 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 833.5-3 chr8 96438026 96438299 + 4 NA Intergenic Intergenic -50724 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 600.5-5 chr22 42320586 42320858 + 4 NA Intergenic Intergenic -36795 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|DDVIBA|SPBP|TCF-20 transcription factor 20 protein-coding 1025 chr10 12737949 12738303 + 4 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -12773 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 454.5-3 chr15 68370926 68371108 + 4 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 61146 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 550-18 chr3 147619294 147619510 + 4 NA Intergenic Intergenic 198075 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 816-4 chr2 161652278 161652637 + 4 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 28041 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 704-5 chr16 7943706 7943935 + 4 NA Intergenic Tigger15a|DNA|TcMar-Tigger 610975 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 600-10 chr13 73537506 73537733 + 4 NA Intergenic Intergenic -26625 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 411-40 chr8 77241233 77241543 + 4 NA Intergenic L1MEi|LINE|L1 -209309 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 682-17 chrX 5647944 5648579 + 4 NA Intergenic Intergenic -578097 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 704 chr1 28995872 28996056 + 4 NA intron (NM_203343, intron 3 of 16) intron (NM_203343, intron 3 of 16) 81388 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 717.5-4 chr3 173375555 173375820 + 4 NA Intergenic L1MEi|LINE|L1 -20265 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 505-10 chr17 63001311 63001441 + 4 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 35141 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 458-19 chr20 45254860 45254987 + 4 NA promoter-TSS (NM_003064) promoter-TSS (NM_003064) -359 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 692-7 chr3 6330611 6330820 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 474734 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 978.5 chr4 44348454 44348909 + 4 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 100128 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 540-7 chr11 11851173 11851458 + 4 NA intron (NM_017944, intron 1 of 26) HAL1|LINE|L1 9892 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 766 chr1 183701877 183702090 + 4 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -48667 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 806-7 chr8 106982680 106983243 + 4 NA Intergenic Intergenic -212717 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 588.5-5 chr15 70374997 70375204 + 4 NA Intergenic Intergenic 130828 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 582-3 chr11 95234153 95234429 + 4 NA non-coding (NR_110295, exon 6 of 6) non-coding (NR_110295, exon 6 of 6) -1816 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 424-24 chr8 134268912 134269062 + 4 NA Intergenic Intergenic -329084 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 872-2 chr2 77883162 77883480 + 4 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -32613 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 468-32 chr5 16929392 16929544 + 4 NA intron (NM_012334, intron 1 of 40) MIR|SINE|MIR 6820 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 589-6 chr17 51977582 51977831 + 4 NA intron (NM_001082533, intron 3 of 9) L1ME2|LINE|L1 181008 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 460.5-7 chr14 54408770 54408944 + 4 NA intron (NM_001330173, intron 4 of 8) intron (NM_001330173, intron 4 of 8) 11850 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 957-3 chr4 33712983 33713279 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 326762 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 466-28 chr7 13035691 13035822 + 4 NA Intergenic MER1B|DNA|hAT-Charlie 348123 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 809-3 chr15 56973411 56973937 + 4 NA intron (NM_207038, intron 3 of 19) L1MC4|LINE|L1 54229 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 644.5-6 chr3 189342173 189342670 + 4 NA Intergenic Intergenic -101827 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 580 chr1 111350459 111350626 + 4 NA intron (NM_181643, intron 5 of 5) MIRc|SINE|MIR 3920 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 658.5-11 chr5 151734063 151734366 + 4 NA Intergenic L1MD3|LINE|L1 24417 NM_004045 475 Hs.125213 NM_004045 ENSG00000177556 ATOX1 ATX1|HAH1 antioxidant 1 copper chaperone protein-coding 599-9 chr2 142210709 142210908 + 4 NA Intergenic Intergenic -79107 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 386-25 chr4 60219116 60219252 + 4 NA Intergenic L4_C_Mam|LINE|RTE-X -703435 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 388-17 chr16 47530529 47530716 + 4 NA intron (NM_001031835, intron 7 of 31) L1M5|LINE|L1 69291 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 521-4 chr12 131186021 131186258 + 4 NA intron (NR_026670, intron 1 of 4) L1MA6|LINE|L1 21128 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 904 chr11 91622130 91622529 + 4 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat -602705 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 775-5 chr4 57256673 57257044 + 4 NA Intergenic Intergenic -146473 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 916 chr11 17676035 17676431 + 4 NA Intergenic L1MC1|LINE|L1 20706 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 818-2 chr18 5537973 5538413 + 4 NA intron (NM_001330557, intron 1 of 21) Kanga1d|DNA|TcMar-Tc2 2363 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 603-10 chr7 109601298 109601531 + 4 NA Intergenic L1M6|LINE|L1 358799 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 503-21 chr4 166325168 166325371 + 4 NA Intergenic L1MCa|LINE|L1 452032 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 453-12 chr18 1939762 1940000 + 4 NA Intergenic L1MA9|LINE|L1 -580252 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 608-3 chr10 36274591 36274870 + 4 NA Intergenic L1P3b|LINE|L1 496428 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 663.5-4 chr20 21799624 21799892 + 4 NA Intergenic Intergenic 94094 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 550-16 chr22 24467364 24467505 + 4 NA intron (NR_028483, intron 3 of 7) MIR3|SINE|MIR 27640 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 604-2 chr1 165931980 165932212 + 4 NA Intergenic L2a|LINE|L2 24175 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 751 chr14 21692367 21692753 + 4 NA Intergenic MER89-int|LTR|ERV1 -21543 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 785.5-2 chr12 4964478 4964736 + 4 NA Intergenic L2b|LINE|L2 54702 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 767-5 chr4 48046670 48046989 + 4 NA Intergenic Intergenic 30057 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 455-28 chr6 64632211 64632377 + 4 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -669124 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 527-24 chr5 153202386 153202563 + 4 NA Intergenic Intergenic -230125 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 470 chr1 56983019 56983162 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -16950 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 670-4 chr11 36304408 36304606 + 4 NA intron (NM_001160167, intron 1 of 8) L1ME3G|LINE|L1 8219 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 636-4 chr11 112861661 112862005 + 4 NA Intergenic L1MEi|LINE|L1 -99587 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 399.5-9 chr2 17669058 17669238 + 4 NA intron (NM_024624, intron 25 of 26) L2a|LINE|L2 84662 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 458-20 chr20 59699110 59699619 + 4 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -21846 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 487.5-12 chr17 67740642 67740867 + 4 NA promoter-TSS (NR_003706) promoter-TSS (NR_003706) 84 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 524.5-14 chr5 141817748 141817890 + 4 NA Intergenic AluSz6|SINE|Alu 48383 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 566-12 chr20 55820300 55820483 + 4 NA Intergenic Intergenic 185128 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 650-9 chr3 158447954 158448156 + 4 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -78653 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 854-5 chr19 47901178 47901536 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -6321 NR_024216 100169959 Hs.723093 NR_024216 SNAR-A13 - small NF90 (ILF3) associated RNA A13 snRNA 655 chr1 203177792 203178060 + 4 NA Intergenic Intergenic -2100 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 613.5-11 chr7 117864172 117864339 + 4 NA intron (NM_001363351, intron 1 of 22) intron (NM_001363351, intron 1 of 22) 7965 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 525.5-11 chr3 182079847 182079993 + 4 NA Intergenic Intergenic 127556 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 699-3 chr12 17006299 17006701 + 4 NA Intergenic L1ME3Cz|LINE|L1 17753 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 1010.5-2 chr11 18554786 18555107 + 4 NA intron (NM_001040697, intron 7 of 11) intron (NM_001040697, intron 7 of 11) 24572 NM_001261385 55293 Hs.407991 NM_018314 ENSG00000151116 UEVLD ATTP|UEV3 UEV and lactate/malate dehyrogenase domains protein-coding 347.5-26 chr7 26019489 26019611 + 4 NA Intergenic Intergenic -69564 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 845 chr11 42184997 42185392 + 4 NA Intergenic MIRb|SINE|MIR 68496 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 531.5-4 chr16 83449319 83449526 + 4 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -58924 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 1120-2 chr7 56216742 56217114 + 4 NA Intergenic LTR104_Mam|LTR|Gypsy -100511 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 531-19 chr2 154275618 154275865 + 4 NA intron (NM_052917, intron 8 of 12) THE1C-int|LTR|ERVL-MaLR 181697 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 403.5-18 chr5 23106774 23106876 + 4 NA Intergenic L1MA4A|LINE|L1 -253481 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 537.5-6 chr14 71623348 71623740 + 4 NA intron (NM_001354286, intron 7 of 24) intron (NM_001354286, intron 7 of 24) 37246 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 670-3 chr10 90221381 90221666 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -264150 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 470-12 chr13 34758879 34759132 + 4 NA Intergenic Intergenic -118320 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 660-8 chr2 13150881 13151192 + 4 NA Intergenic L1ME3D|LINE|L1 -144023 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 655-7 chr17 46979717 46979914 + 4 NA promoter-TSS (NM_203400) promoter-TSS (NM_203400) -562 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 438-7 chr11 33259830 33259951 + 4 NA intron (NM_001278162, intron 1 of 15) intron (NM_001278162, intron 1 of 15) 1559 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 450-17 chr6 94439634 94439773 + 4 NA Intergenic Intergenic 721400 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 944-2 chr6 115824192 115824662 + 4 NA Intergenic Intergenic -180592 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 487-8 chr10 98396217 98396381 + 4 NA promoter-TSS (NR_031619) promoter-TSS (NR_031619) -992 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 711 chr11 111069484 111069974 + 4 NA Intergenic Intergenic 27589 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 1223-2 chrUn_GL000216v2 68 752 + 4 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 739-9 chr7 40307598 40307878 + 4 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 172762 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 726-6 chr5 101407639 101407838 + 4 NA Intergenic L1PB2|LINE|L1 -504456 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 1050 chr9 26056365 26056730 + 4 NA Intergenic Intergenic -10128 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 690-3 chr13 87134978 87135313 + 4 NA Intergenic Intergenic 223225 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 511.5-17 chr3 87976953 87977201 + 4 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -5499 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 754.5-3 chr18 3836216 3836462 + 4 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 9019 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1068 chr3 148799449 148799934 + 4 NA Intergenic Intergenic -28120 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 448-13 chr17 50444709 50444853 + 4 NA intron (NM_001288968, intron 2 of 16) L1ME3G|LINE|L1 18623 NM_001288970 80221 Hs.288959 NM_025149 ENSG00000167107 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 1062 chr2 58608407 58608812 + 4 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 87856 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 1105 chr2 55406073 55406448 + 4 NA intron (NM_001254943, intron 2 of 33) intron (NM_001254943, intron 2 of 33) 13596 NM_001365480 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 511-2 chr1 237774569 237774770 + 4 NA intron (NM_001035, intron 87 of 104) intron (NM_001035, intron 87 of 104) -87506 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 554-24 chr7 79624735 79624881 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 170848 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 851-3 chr2 200913359 200913651 + 4 NA non-coding (NR_033915, exon 16 of 17) non-coding (NR_033915, exon 16 of 17) 21587 NM_001142356 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 626-15 chr5 103821092 103821342 + 4 NA Intergenic L1ME3A|LINE|L1 -258428 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 558 chr1 174580816 174581044 + 4 NA intron (NM_001366446, intron 13 of 25) L1MB8|LINE|L1 -119609 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 554-5 chr10 43117059 43117312 + 4 NA intron (NM_020630, intron 12 of 18) intron (NM_020630, intron 12 of 18) 12453 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 616.5-9 chr2 95136305 95136682 + 4 NA Intergenic AluSx|SINE|Alu -14466 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 605.5-6 chr6 153052948 153053258 + 4 NA intron (NM_012419, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR -50288 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 430.5-19 chr3 191832087 191832264 + 4 NA Intergenic L1MEg|LINE|L1 371012 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 584-15 chr3 140039498 140039712 + 4 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 104420 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1125-2 chr8 122265299 122265782 + 4 NA Intergenic Intergenic 303104 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 877.5-2 chr17 60346288 60346713 + 4 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 45633 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 500-9 chr20 34790252 34790438 + 4 NA intron (NM_001318240, intron 3 of 15) (ATTT)n|Simple_repeat|Simple_repeat -7941 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 515-22 chrX 25523340 25523500 + 4 NA Intergenic Intergenic -507455 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 578.5 chr1 101866833 101867076 + 4 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) -5058 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 1200 chr19 32225769 32226271 + 4 NA Intergenic L1ME4a|LINE|L1 -119590 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 580-15 chr6 168635792 168635988 + 4 NA intron (NM_001166412, intron 9 of 12) intron (NM_001166412, intron 9 of 12) 194706 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 587-6 chr16 72874944 72875134 + 4 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) 173089 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 435-34 chr7 45956367 45956517 + 4 NA Intergenic Intergenic -35170 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 468-18 chr2 160275069 160275263 + 4 NA intron (NM_002897, intron 13 of 13) intron (NM_002897, intron 13 of 13) -3271 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 677 chr1 84871082 84871267 + 4 NA intron (NM_012152, intron 1 of 2) intron (NM_012152, intron 1 of 2) 22032 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 440-26 chr3 128778073 128778265 + 4 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) 52033 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 647.5-6 chr2 129265560 129265874 + 4 NA intron (NR_122042, intron 1 of 3) intron (NR_122042, intron 1 of 3) 8174 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 573-18 chr8 16931809 16932024 + 4 NA Intergenic L1MEf|LINE|L1 70429 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 877 chr1 61176985 61177351 + 4 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 76350 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 582-19 chr7 34022807 34023034 + 4 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 117381 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 454-31 chr8 78570898 78571128 + 4 NA intron (NM_181839, intron 1 of 2) intron (NM_181839, intron 1 of 2) -12510 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 683.5-5 chr22 47086814 47087069 + 4 NA intron (NM_001284305, intron 11 of 12) L1MC5a|LINE|L1 -170899 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 473.5-6 chr16 53907877 53908090 + 4 NA intron (NM_001363894, intron 8 of 9) intron (NM_001363894, intron 8 of 9) -131410 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 481-13 chr3 113987557 113987760 + 4 NA intron (NR_148531, intron 11 of 14) AluJo|SINE|Alu 39645 NM_001320468 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 972 chr11 78237422 78237821 + 4 NA intron (NM_012296, intron 3 of 9) intron (NM_012296, intron 3 of 9) 48702 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 624-4 chr19 52651185 52651462 + 4 NA intron (NM_001348018, intron 3 of 5) HERVIP10F-int|LTR|ERV1 -12932 NM_018300 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 930-4 chr21 33946986 33947324 + 4 NA intron (NR_134558, intron 2 of 2) intron (NR_134558, intron 2 of 2) 15941 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 440-13 chr18 3485823 3486073 + 4 NA Intergenic Intergenic 19698 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 709.5-6 chr4 45937708 45937931 + 4 NA Intergenic Intergenic 186235 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 499-25 chr8 134404403 134404594 + 4 NA Intergenic Intergenic -193573 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 642-5 chr2 67158045 67158234 + 4 NA intron (NR_038844, intron 4 of 7) intron (NR_038844, intron 4 of 7) -55269 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 529-14 chr20 31242929 31243190 + 4 NA Intergenic Intergenic -14605 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 788-9 chr5 146858680 146859020 + 4 NA intron (NM_181678, intron 2 of 10) intron (NM_181678, intron 2 of 10) 19935 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 696.5-4 chr2 103723737 103724326 + 4 NA Intergenic L1MA4A|LINE|L1 684301 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 730-4 chr6 105685122 105685318 + 4 NA Intergenic Intergenic -282138 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 524-15 chr3 82413222 82413502 + 4 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 427220 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 1255-2 chrX 122696668 122697006 + 4 NA Intergenic L1M4b|LINE|L1 -487406 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 455-25 chr4 64518150 64518313 + 4 NA Intergenic Intergenic -108771 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 571-13 chr22 29768305 29768637 + 4 NA intron (NM_001003684, intron 1 of 1) intron (NM_001003684, intron 1 of 1) 1102 NM_013387 29796 Hs.284292 NM_013387 ENSG00000184076 UQCR10 HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 476-17 chr2 45185048 45185200 + 4 NA intron (NR_033831, intron 4 of 5) intron (NR_033831, intron 4 of 5) 69817 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 1109 chr17 15691948 15692276 + 4 NA Intergenic L1MDa|LINE|L1 -7640 NM_001288644 57335 Hs.585799 NM_020652 ENSG00000187607 ZNF286A ZNF286 zinc finger protein 286A protein-coding 506-16 chr2 236756067 236756232 + 4 NA Intergenic L1MEg|LINE|L1 186324 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 500-2 chr1 193785772 193785978 + 4 NA Intergenic Intergenic 481130 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 743-6 chr6 12189842 12190242 + 4 NA Intergenic L1ME4b|LINE|L1 -100319 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 516-26 chr7 36136849 36137106 + 4 NA Intergenic Intergenic -16277 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 458 chr1 232420451 232420666 + 4 NA intron (NM_020808, intron 16 of 20) AluYk2|SINE|Alu 95050 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 608-8 chr2 22076691 22076963 + 4 NA Intergenic L1MB7|LINE|L1 -366175 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 776-4 chr6 132499169 132499504 + 4 NA intron (NM_001326579, intron 2 of 9) MLT1J|LTR|ERVL-MaLR 13447 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 850 chr11 114870827 114871105 + 4 NA Intergenic Intergenic 192439 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 537-2 chr10 115419789 115420008 + 4 NA intron (NM_207303, intron 20 of 28) L1MA6|LINE|L1 326533 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 1060 chr7 1754287 1754666 + 4 NA Intergenic L1MD2|LINE|L1 -12166 NR_120509 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 753-5 chr18 59124854 59125084 + 4 NA Intergenic Intergenic -14915 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 248-17 chr3 105667086 105667150 + 4 NA intron (NR_135809, intron 18 of 18) intron (NR_135809, intron 18 of 18) 200473 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 501.5-23 chr5 59154370 59154495 + 4 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -114956 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 446-15 chr15 62200605 62200825 + 4 NA intron (NR_148210, intron 1 of 3) L1M4|LINE|L1 2603 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 608-15 chr6 147079891 147080151 + 4 NA intron (NR_034115, intron 4 of 10) intron (NR_034115, intron 4 of 10) -78904 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 641 chr12 110276160 110276327 + 4 NA Intergenic MamRep137|DNA|TcMar-Tigger -5004 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 461-14 chr2 232973202 232973417 + 4 NA intron (NM_019850, intron 2 of 14) intron (NM_019850, intron 2 of 14) -39305 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 311-24 chr3 188058770 188058847 + 4 NA Intergenic Intergenic -82401 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 874.5-4 chr6 85153621 85154009 + 4 NA Intergenic L1MC3|LINE|L1 236371 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 500.5-14 chr4 105824332 105824485 + 4 NA intron (NR_125927, intron 1 of 3) intron (NR_125927, intron 1 of 3) 2764 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 1061 chr2 156808660 156809122 + 4 NA Intergenic Intergenic 372512 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 863-2 chr2 32984971 32985341 + 4 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 38203 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 621-16 chr5 146174446 146174607 + 4 NA intron (NM_001317965, intron 1 of 30) (AT)n|Simple_repeat|Simple_repeat 8124 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 498.5-7 chr19 45755357 45755494 + 4 NA intron (NM_001310124, intron 7 of 14) AluSx|SINE|Alu -12371 NR_147193 109729182 Hs.664071 NR_147193 ENSG00000267395 DM1-AS - DM1 locus antisense RNA ncRNA 566-7 chr2 23474989 23475223 + 4 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 89927 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 863-7 chr6 162565577 162565937 + 4 NA intron (NM_004562, intron 1 of 11) L1MA1|LINE|L1 -161375 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 783-4 chr14 53052685 53052898 + 4 NA intron (NM_001160148, intron 11 of 12) intron (NM_001160148, intron 11 of 12) 100532 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 574.5-4 chr11 133220176 133220407 + 4 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -276523 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 479-11 chr2 41757944 41758099 + 4 NA Intergenic L1MC3|LINE|L1 -119534 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 746-7 chr9 18463946 18464214 + 4 NA Intergenic (GTT)n|Simple_repeat|Simple_repeat -10073 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 641.5-8 chr6 53198043 53198268 + 4 NA Intergenic Intergenic -49314 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 1024 chr14 50897761 50898205 + 4 NA intron (NM_001206673, intron 9 of 12) intron (NM_001206673, intron 9 of 12) 25823 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 605.5-7 chr8 3896603 3896754 + 4 NA intron (NM_033225, intron 5 of 69) AluY|SINE|Alu 1098236 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 956 chr10 75677966 75678308 + 4 NA intron (NR_131178, intron 1 of 7) (ACATAT)n|Simple_repeat|Simple_repeat 30628 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 764-7 chr4 33087376 33087738 + 4 NA Intergenic Intergenic 736519 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 690.5 chr10 33452127 33452332 + 4 NA Intergenic L1MEc|LINE|L1 -117324 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 522-34 chr8 120972312 120972504 + 4 NA Intergenic Intergenic -160362 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 986-2 chr11 17782717 17783072 + 4 NA 3' UTR (NM_001112741, exon 4 of 4) 3' UTR (NM_001112741, exon 4 of 4) 46946 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 874.5-5 chr8 81606224 81606613 + 4 NA non-coding (NR_146081, exon 8 of 8) non-coding (NR_146081, exon 8 of 8) 24859 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 792-2 chr6 7978631 7979012 + 4 NA intron (NR_037616, intron 4 of 12) MER65A|LTR|ERV1 -7281 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 448-35 chr9 4683752 4683940 + 4 NA intron (NM_017913, intron 1 of 6) intron (NM_017913, intron 1 of 6) 4277 NM_017913 55664 Hs.666439 NM_017913 ENSG00000106993 CDC37L1 CDC37B|HARC cell division cycle 37 like 1 protein-coding 552.5-16 chr5 33985679 33985922 + 4 NA TTS (NM_014324) TTS (NM_014324) -1107 NM_016180 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 502-10 chr2 141014050 141014200 + 4 NA intron (NM_018557, intron 13 of 90) intron (NM_018557, intron 13 of 90) -427440 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 564-4 chr10 77577990 77578193 + 4 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 59717 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 258.5-26 chr7 27932801 27932888 + 4 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 192749 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 426-2 chr1 109944674 109944838 + 4 NA Intergenic Intergenic 33907 NM_000757 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 965 chr10 25332870 25333438 + 4 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -156878 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 631-15 chr7 107617563 107617766 + 4 NA intron (NR_163926, intron 9 of 9) intron (NR_163926, intron 9 of 9) 37418 NR_163928 1313.5 chr14 53251868 53252388 + 4 NA Intergenic MER34A1|LTR|ERV1 98774 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 840-3 chr8 122225615 122225938 + 4 NA Intergenic L1MD|LINE|L1 342868 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1178 chr3 3227168 3227484 + 4 NA Intergenic AluJb|SINE|Alu -47609 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 1037.5 chr4 103181113 103181446 + 4 NA intron (NM_001813, intron 12 of 48) intron (NM_001813, intron 12 of 48) 17064 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 893-2 chr7 4402144 4402619 + 4 NA Intergenic MER77|LTR|ERVL -267544 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 724-9 chr21 46073305 46073629 + 4 NA Intergenic L1M5|LINE|L1 -24645 NM_058174 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 605 chr1 48370950 48371232 + 4 NA intron (NM_019073, intron 9 of 12) L1MEd|LINE|L1 101113 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 594-18 chr8 140132928 140133304 + 4 NA intron (NM_001160372, intron 17 of 22) L1MB4|LINE|L1 -32581 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 326-30 chr5 88720700 88720814 + 4 NA 3' UTR (NM_001364347, exon 11 of 11) 3' UTR (NM_001364347, exon 11 of 11) -29716 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 732.5-6 chr2 202466757 202467053 + 4 NA intron (NM_001204, intron 2 of 12) L1ME4a|LINE|L1 90578 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 918.5-2 chr14 58684693 58685046 + 4 NA Intergenic L1MB7|LINE|L1 46032 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 288-21 chr2 149032216 149032306 + 4 NA Intergenic L2a|LINE|L2 -6206 NM_001317006 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 507-26 chr4 143599620 143599907 + 4 NA intron (NM_001168235, intron 6 of 7) intron (NM_001168235, intron 6 of 7) 40291 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 820-7 chr8 132049480 132049734 + 4 NA intron (NM_001080399, intron 2 of 13) intron (NM_001080399, intron 2 of 13) 9775 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 944.5-3 chr7 158179225 158179589 + 4 NA intron (NM_130843, intron 5 of 21) L1PB3|LINE|L1 324822 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 558-10 chr2 164204016 164204269 + 4 NA Intergenic Intergenic 364353 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 533 chr1 118799376 118799615 + 4 NA Intergenic L1MA7|LINE|L1 188848 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 625-12 chr4 169893358 169893670 + 4 NA Intergenic Intergenic 82388 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 448-26 chr4 22158804 22158939 + 4 NA Intergenic L1PREC2|LINE|L1 180795 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 812-8 chr8 133522588 133522895 + 4 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 49146 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 532-3 chr12 47712023 47712211 + 4 NA intron (NM_001172440, intron 6 of 7) intron (NM_001172440, intron 6 of 7) -6056 NM_001146075 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 420-14 chr17 52812066 52812279 + 4 NA Intergenic Intergenic -49949 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 502-14 chr4 61360212 61360368 + 4 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 158118 NM_001371342 377.5-12 chr3 20738857 20738968 + 4 NA Intergenic Intergenic 396444 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 437-5 chr1 204816358 204816545 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -12201 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 462-18 chr2 70423928 70424138 + 4 NA Intergenic Intergenic 57607 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 518.5 chr1 201291220 201291416 + 4 NA intron (NM_001005337, intron 1 of 13) intron (NM_001005337, intron 1 of 13) 7812 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 1150 chr10 24260804 24261263 + 4 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -14652 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 750.5-6 chr21 32522021 32522224 + 4 NA Intergenic Intergenic 63401 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 700-8 chr18 21740155 21740658 + 4 NA promoter-TSS (NM_020774) promoter-TSS (NM_020774) -923 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 493-6 chr13 93737849 93738028 + 4 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 120535 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 468-45 chr8 135736480 135736805 + 4 NA Intergenic L1ME3|LINE|L1 279186 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 588-24 chr20 8361150 8361479 + 4 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 112610 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 533.5-14 chrUn_KI270438v1 103917 104270 + 4 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 526-11 chr3 52337255 52337448 + 4 NA intron (NM_015512, intron 8 of 77) L1MC4|LINE|L1 21032 NM_015512 25981 Hs.655469 NM_015512 ENSG00000114841 DNAH1 CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1 dynein axonemal heavy chain 1 protein-coding 471-17 chr17 14164370 14164546 + 4 NA intron (NM_001303, intron 5 of 6) Ricksha|DNA|MULE-MuDR 72404 NM_001348781 146822 Hs.447556 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 470-28 chr4 59654514 59654788 + 4 NA Intergenic Intergenic 641078 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1244.5 chrX 51557418 51558011 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -50273 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 610-3 chr12 12154366 12154575 + 4 NA intron (NM_002336, intron 12 of 22).2 L2a|LINE|L2 42518 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 940-3 chr21 18610089 18610554 + 4 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 75843 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 622-6 chr2 239045357 239045552 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 23460 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 414-24 chr22 47913314 47913488 + 4 NA Intergenic L1ME3Cz|LINE|L1 281727 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 542.5-3 chr10 23024373 23024533 + 4 NA intron (NM_001282745, intron 16 of 18) L1MDa|LINE|L1 -71126 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 723 chr1 94123525 94123813 + 4 NA Intergenic L1MB3|LINE|L1 -2521 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 816-3 chr2 45908932 45909147 + 4 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 257364 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 567-13 chr21 34044659 34044838 + 4 NA Intergenic L2-1_AMi|LINE|L2 -28830 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 971.5-3 chr18 36701150 36701522 + 4 NA intron (NM_001281740, intron 17 of 28) intron (NM_001281740, intron 17 of 28) -37918 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 571-18 chr5 95394474 95394722 + 4 NA intron (NM_152548, intron 2 of 9) intron (NM_152548, intron 2 of 9) 3232 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 389-13 chr15 57400914 57401097 + 4 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 24500 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 885-3 chr3 145239295 145239572 + 4 NA Intergenic Intergenic 829752 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 850-8 chr8 87112737 87113092 + 4 NA intron (NM_173538, intron 4 of 10) LTR16A1|LTR|ERVL 246499 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 636-22 chr8 117247534 117247735 + 4 NA Intergenic Intergenic 112639 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 548-20 chr8 133424056 133424231 + 4 NA Intergenic Intergenic -126839 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 420-15 chr18 35586978 35587108 + 4 NA Intergenic L1MD1|LINE|L1 -4694 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 594.5-5 chr22 50316672 50316907 + 4 NA intron (NM_001001794, intron 5 of 19) intron (NM_001001794, intron 5 of 19) -9143 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 442.5-22 chr7 33878725 33878943 + 4 NA Intergenic L1MB8|LINE|L1 -26081 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 481.5-3 chr10 111696051 111696297 + 4 NA Intergenic Intergenic 487591 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1191.5-2 chr3 15728868 15729419 + 4 NA intron (NM_001349280, intron 5 of 26) MLT1I|LTR|ERVL-MaLR 27404 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 894-2 chr21 22632702 22633002 + 4 NA Intergenic L1PA16|LINE|L1 -446432 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 364-20 chr20 8248561 8248655 + 4 NA promoter-TSS (NR_046809) promoter-TSS (NR_046809) -96 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 517.5-2 chr1 92725173 92725412 + 4 NA intron (NM_001350198, intron 2 of 19) L1MEc|LINE|L1 59816 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 613-5 chr17 48207672 48207960 + 4 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -51305 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 693-16 chr8 27249534 27249725 + 4 NA intron (NM_001283053, intron 1 of 7) intron (NM_001283053, intron 1 of 7) 8775 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 912 chr6 165179449 165179769 + 4 NA Intergenic Intergenic 129996 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 523-22 chr4 120415621 120415814 + 4 NA Intergenic Charlie15a|DNA|hAT-Charlie -348869 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 819-8 chr6 41463458 41463966 + 4 NA Intergenic MIRc|SINE|MIR -38732 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 727-9 chr4 105004218 105004561 + 4 NA Intergenic Intergenic -141486 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 630.5-2 chr10 35802106 35802365 + 4 NA Intergenic HAL1|LINE|L1 23933 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 462-6 chr10 51441172 51441388 + 4 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 141707 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 853.5-3 chr7 14219470 14219971 + 4 NA intron (NM_001350717, intron 22 of 24) L1MB8|LINE|L1 -228295 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 637-3 chr2 63405850 63406057 + 4 NA intron (NR_148704, intron 10 of 18) L1MC4a|LINE|L1 32054 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 862-2 chr10 111752181 111752472 + 4 NA Intergenic L1ME1|LINE|L1 431439 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 844-5 chr6 163063605 163063955 + 4 NA intron (NM_001080379, intron 3 of 4) intron (NM_001080379, intron 3 of 4) -9619 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 509-5 chr12 46560692 46560981 + 4 NA intron (NR_125380, intron 3 of 3) L1M4|LINE|L1 176729 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 791-2 chr11 26470829 26471077 + 4 NA intron (NM_031418, intron 4 of 26) intron (NM_031418, intron 4 of 26) -2949 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 478-5 chr11 27737657 27737887 + 4 NA Intergenic Intergenic -15742 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 881-3 chr20 38541612 38541922 + 4 NA intron (NM_001282917, intron 18 of 29) L2c|LINE|L2 25204 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 671-14 chr8 91227212 91227623 + 4 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) 17921 NM_001282356 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 991 chr13 91085311 91085629 + 4 NA Intergenic Intergenic 4147 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 986-4 chr15 89075847 89076205 + 4 NA Intergenic Intergenic -12430 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 668-3 chr10 89342086 89342268 + 4 NA Intergenic Intergenic 9648 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 282-7 chr1 195365340 195365414 + 4 NA Intergenic L1MC1|LINE|L1 723338 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 635.5-9 chr4 49711597 49711871 + 4 NA Intergenic SAR|Satellite|Satellite 725092 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 630-20 chr8 111175243 111175563 + 4 NA intron (NR_125418, intron 1 of 3) AluSx3|SINE|Alu 60800 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 726 chr10 60507191 60507524 + 4 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 65599 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 361-13 chr15 26778496 26778618 + 4 NA Intergenic L1ME2|LINE|L1 -4794 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 844-2 chr10 64079869 64080261 + 4 NA Intergenic Intergenic -558175 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 657.5-11 chr8 134003015 134003237 + 4 NA Intergenic Intergenic 116630 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1274 chr1 203156327 203156840 + 4 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 19243 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 310-15 chr17 35185685 35185825 + 4 NA intron (NM_001033576, intron 19 of 19) MIRb|SINE|MIR 8638 NM_152462 146861 Hs.514814 NM_152462 ENSG00000164729 SLC35G3 AMAC1|TMEM21A solute carrier family 35 member G3 protein-coding 740-9 chr6 77073456 77073795 + 4 NA Intergenic Intergenic 390397 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 762-4 chr15 57701907 57702215 + 4 NA intron (NR_104371, intron 13 of 16) MLT1F2|LTR|ERVL-MaLR -4460 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 457-33 chr9 120701297 120701464 + 4 NA intron (NM_001080497, intron 1 of 5) intron (NM_001080497, intron 1 of 5) 13090 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 447-20 chr4 42906943 42907064 + 4 NA intron (NM_001080476, intron 1 of 3) LTR16A1|LTR|ERVL 13737 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 751-3 chr2 107374906 107375093 + 4 NA Intergenic L1MC3|LINE|L1 -25474 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 484-7 chr1 224473086 224473321 + 4 NA intron (NM_001322302, intron 2 of 6) L1M1|LINE|L1 38354 NM_001322302 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 588.5-14 chr6 35374924 35375144 + 4 NA intron (NM_001171819, intron 2 of 6) L1MEi|LINE|L1 32476 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 513.5-8 chr2 48480073 48480343 + 4 NA intron (NR_024188, intron 13 of 21) intron (NR_024188, intron 13 of 21) 39439 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 320.5-35 chr9 29245427 29245526 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -31875 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 486.5-4 chr12 5629950 5630104 + 4 NA intron (NM_001278596, intron 17 of 25) intron (NM_001278596, intron 17 of 25) 135895 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 365-4 chr10 126176509 126176699 + 4 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) -203331 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 576.5-9 chrX 84900329 84900524 + 4 NA Intergenic Intergenic -33725 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 827.5 chr4 77422192 77422463 + 4 NA Intergenic AluSz6|SINE|Alu -89426 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 731.5-2 chr6 24861624 24861861 + 4 NA intron (NM_001286445, intron 7 of 21) L1MC4|LINE|L1 15528 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 681-11 chr7 95148934 95149246 + 4 NA intron (NM_017650, intron 4 of 15) L1MC1|LINE|L1 175442 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 684.5-5 chr2 79945402 79945661 + 4 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -78948 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 453.5-6 chr14 52871417 52871576 + 4 NA intron (NM_006832, intron 10 of 14) intron (NM_006832, intron 10 of 14) 79554 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 397-12 chr15 67623501 67623682 + 4 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 74497 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 302-34 chr8 87178096 87178200 + 4 NA intron (NM_173538, intron 4 of 10) L2a|LINE|L2 311733 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 475-6 chr14 67937933 67938168 + 4 NA intron (NM_133509, intron 7 of 10) MamGypsy2-I|LTR|Gypsy 114458 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 457-10 chr2 56688440 56688653 + 4 NA Intergenic (ATTTTA)n|Simple_repeat|Simple_repeat -502776 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 705-2 chr10 118096718 118096992 + 4 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -49914 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 1290-3 chr3 18803307 18803975 + 4 NA Intergenic Intergenic -344869 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 762-2 chr10 81850110 81850419 + 4 NA Intergenic L1MB7|LINE|L1 -24930 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 881.5 chr17 62366511 62366859 + 4 NA Intergenic L2a|LINE|L2 -3533 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 1131 chr11 37960792 37961296 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 22443 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 831-7 chrX 25098024 25098465 + 4 NA Intergenic L1MC4a|LINE|L1 -82279 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 460-6 chr10 127750604 127750743 + 4 NA Intergenic Cheshire|DNA|hAT-Charlie 13488 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 833-4 chr3 89176748 89177199 + 4 NA intron (NM_182644, intron 2 of 6) (AC)n|Simple_repeat|Simple_repeat 69352 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 506-32 chr9 77157750 77157980 + 4 NA Intergenic Intergenic -19580 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 456-7 chr11 79514227 79514451 + 4 NA Intergenic Intergenic -73309 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 482-11 chr2 86537188 86537366 + 4 NA intron (NM_001005753, intron 1 of 4) L1MB3|LINE|L1 26166 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 736-7 chr19 29924261 29924519 + 4 NA intron (NM_001252641, intron 1 of 10) intron (NM_001252641, intron 1 of 10) 733 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 408-36 chr7 24960997 24961108 + 4 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 19126 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 658-11 chr3 178086121 178086335 + 4 NA Intergenic Intergenic 269363 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 969.5 chr4 104559793 104560401 + 4 NA intron (NR_125926, intron 1 of 9) L1PA16|LINE|L1 -65203 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 447-24 chr6 35981194 35981377 + 4 NA intron (NM_001193476, intron 8 of 19) intron (NM_001193476, intron 8 of 19) 43215 NM_138718 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 527-6 chr10 111402707 111402889 + 4 NA Intergenic L1ME1|LINE|L1 288507 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 1208-2 chr9 88406449 88406769 + 4 NA intron (NM_006717, intron 1 of 5) intron (NM_006717, intron 1 of 5) 18165 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 579-4 chr13 39617469 39617668 + 4 NA Intergenic L1MD3|LINE|L1 -14375 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 848.5-2 chr14 70122099 70122387 + 4 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -42026 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 509-15 chr3 101870427 101870581 + 4 NA Intergenic L1ME2|LINE|L1 20990 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 518-12 chr2 55306480 55306667 + 4 NA intron (NM_001254943, intron 25 of 33) intron (NM_001254943, intron 25 of 33) 24254 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 582.5-8 chr4 59560691 59560881 + 4 NA Intergenic L1PA7|LINE|L1 547213 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 832-3 chr2 13501824 13502118 + 4 NA Intergenic L1MEc|LINE|L1 -494958 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 588-6 chr10 104886906 104887065 + 4 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -220769 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 426-19 chr2 234963226 234963370 + 4 NA intron (NM_014521, intron 1 of 5) intron (NM_014521, intron 1 of 5) -2041 NM_001371302 902-2 chr2 102417586 102417977 + 4 NA Intergenic Intergenic -1009 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 628 chr1 43856605 43856875 + 4 NA intron (NM_001270466, intron 4 of 4) intron (NM_001270466, intron 4 of 4) 18118 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 633-4 chr2 62795576 62795784 + 4 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 88783 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 555-2 chr1 87289402 87289761 + 4 NA Intergenic L1MB3|LINE|L1 -39299 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 873.5-2 chr4 86581089 86581509 + 4 NA Intergenic Intergenic -13016 NM_006264 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 536-5 chr12 40510335 40510535 + 4 NA intron (NM_173600, intron 81 of 173) intron (NM_173600, intron 81 of 173) 117041 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 738-8 chr5 147247510 147247868 + 4 NA intron (NM_001112724, intron 2 of 12) MER58B|DNA|hAT-Charlie 12663 NM_001287740 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 1146 chr13 65815702 65816176 + 4 NA Intergenic L1MEf|LINE|L1 -50108 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 434.5-5 chr14 25352599 25352764 + 4 NA Intergenic Intergenic -302384 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 646.5-2 chr12 964050 964430 + 4 NA intron (NM_001297419, intron 1 of 11) L2a|LINE|L2 -14518 NM_001297421 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 492-28 chr7 85772152 85772386 + 4 NA Intergenic Intergenic 351147 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 569.5-17 chr8 142308568 142308825 + 4 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 94486 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 563-20 chr9 102849078 102849301 + 4 NA Intergenic Intergenic -146144 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 677-14 chr8 28732071 28732348 + 4 NA intron (NM_001440, intron 4 of 6) intron (NM_001440, intron 4 of 6) 30708 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 626.5-4 chr2 53813572 53813806 + 4 NA intron (NM_001127397, intron 11 of 12) intron (NM_001127397, intron 11 of 12) 26645 NM_015701 27248 Hs.438336 NM_015701 ENSG00000068912 ERLEC1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB endoplasmic reticulum lectin 1 protein-coding 685.5-3 chr18 59507157 59507450 + 4 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -148038 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 999 chr5 62716704 62716994 + 4 NA Intergenic Intergenic 138030 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 920-5 chr3 187080166 187080521 + 4 NA Intergenic Intergenic 41625 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 493-22 chr5 33035573 33035810 + 4 NA Intergenic Intergenic 88248 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 794-6 chr6 62249184 62249490 + 4 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 36888 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 607.5 chr1 100623615 100623824 + 4 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 23285 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 777-5 chr2 29652455 29652725 + 4 NA intron (NM_004304, intron 3 of 28) MER21B|LTR|ERVL -177213 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 574-12 chr3 23530865 23531138 + 4 NA intron (NM_001370225, intron 4 of 5) L1MEd|LINE|L1 -274954 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 886 chr17 70881711 70882017 + 4 NA Intergenic Intergenic 320315 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 386-27 chr5 13806609 13806730 + 4 NA intron (NM_001369, intron 47 of 78) intron (NM_001369, intron 47 of 78) 137811 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 645.5-3 chr11 118529171 118529406 + 4 NA intron (NM_001080441, intron 2 of 2) MIR|SINE|MIR -1170 NM_001346098 143941 Hs.653449 NM_001080441 ENSG00000172425 TTC36 HBP21 tetratricopeptide repeat domain 36 protein-coding 773-3 chr3 70171433 70171664 + 4 NA Intergenic Intergenic 141090 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 381-3 chr1 200231434 200231568 + 4 NA Intergenic Intergenic 142291 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 910 chr15 91007363 91007637 + 4 NA exon (NM_018668, exon 8 of 23) exon (NM_018668, exon 8 of 23) -12965 NM_003981 9055 Hs.366401 NM_003981 ENSG00000198901 PRC1 ASE1 protein regulator of cytokinesis 1 protein-coding 410.5-11 chr2 217096799 217096945 + 4 NA Intergenic Intergenic -185861 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 544-10 chr4 100354185 100354392 + 4 NA Intergenic Intergenic 40959 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 772-7 chr4 62259728 62260071 + 4 NA Intergenic Intergenic -98134 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 726-3 chr14 42802423 42802800 + 4 NA Intergenic MIR1_Amn|SINE|MIR 1195755 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 497.5-11 chr3 23201057 23201308 + 4 NA intron (NR_136176, intron 1 of 1) L2a|LINE|L2 1396 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 947.5-2 chr14 62600063 62600428 + 4 NA Intergenic L1MA8|LINE|L1 445213 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1140.5 chr11 24613404 24613932 + 4 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 116615 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 311-5 chr1 196261060 196261211 + 4 NA intron (NR_146058, intron 26 of 29) intron (NR_146058, intron 26 of 29) -172420 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 913-5 chr20 40217918 40218269 + 4 NA Intergenic Intergenic 213632 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 524.5-3 chr14 31043172 31043394 + 4 NA intron (NM_001254728, intron 1 of 5) intron (NM_001254728, intron 1 of 5) 16640 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 954.5 chr7 53297004 53297394 + 4 NA Intergenic MER1A|DNA|hAT-Charlie 261566 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 608-10 chr2 124423082 124423290 + 4 NA intron (NM_130773, intron 4 of 23) MIR|SINE|MIR 397899 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 765.5 chr10 49615265 49615525 + 4 NA intron (NM_001142929, intron 1 of 14) intron (NM_001142929, intron 1 of 14) 1358 NM_020549 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 921-4 chr8 125926327 125926736 + 4 NA intron (NR_038447, intron 3 of 3) intron (NR_038447, intron 3 of 3) 24666 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 567.5-7 chr16 81675441 81675694 + 4 NA intron (NM_030629, intron 9 of 20) MER5A1|DNA|hAT-Charlie 10213 NR_045112 100129617 Hs.657151 NR_045112 LOC100129617 - uncharacterized LOC100129617 ncRNA 659.5 chr11 64069694 64069976 + 4 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) -34055 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding 651-8 chr5 2970434 2970632 + 4 NA Intergenic Intergenic 52679 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 740-11 chr7 40582122 40582424 + 4 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 397666 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 462-9 chr11 25331632 25331764 + 4 NA Intergenic Intergenic 834645 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 593.5-8 chr5 3843334 3843586 + 4 NA Intergenic Intergenic 247628 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 873-3 chr3 94890590 94890850 + 4 NA Intergenic ERV24_Prim-int|LTR|ERV1 -47543 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 690-6 chr18 10382445 10382701 + 4 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 31797 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 722-5 chr9 102858599 102859050 + 4 NA Intergenic HERV16-int|LTR|ERVL -136509 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 696.5-7 chrX 72035062 72035242 + 4 NA intron (NM_001013627, intron 1 of 7) L1MEf|LINE|L1 -9257 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 490-24 chr4 67397665 67397855 + 4 NA Intergenic Intergenic 24240 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 394-25 chr8 29443906 29444038 + 4 NA Intergenic Intergenic -93288 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 704-3 chr12 14432168 14432470 + 4 NA intron (NM_001286515, intron 2 of 12) Tigger20a|DNA|TcMar-Tigger 47038 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 571.5-7 chr5 9589693 9589996 + 4 NA Intergenic Intergenic 40507 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 949.5 chr2 136222602 136223079 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -104685 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 1168 chr2 25508805 25509357 + 4 NA intron (NM_033147, intron 9 of 19) L1MEd|LINE|L1 141141 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 612.5 chr10 14284106 14284427 + 4 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 46618 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 869 chr12 45001880 45002334 + 4 NA Intergenic L2a|LINE|L2 48992 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 594-2 chr10 76860331 76860614 + 4 NA Intergenic L1ME1|LINE|L1 -27572 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 581-12 chr3 147304981 147305183 + 4 NA Intergenic Intergenic 87348 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 856-6 chr20 40740050 40740427 + 4 NA Intergenic MIRc|SINE|MIR -25615 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 1096 chr1 217656063 217656465 + 4 NA intron (NM_138796, intron 3 of 10) MARNA|DNA|TcMar-Mariner 24920 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 537.5-12 chr2 183407920 183408153 + 4 NA Intergenic L3|LINE|CR1 283593 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 753-10 chr8 25700735 25701054 + 4 NA Intergenic MER72B|LTR|ERV1 241661 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 653.5-13 chr5 149408337 149408640 + 4 NA intron (NR_105060, intron 1 of 4) MIRb|SINE|MIR 1643 NR_105060 728264 Hs.519666 NR_027180 CARMN CARMEN|MIR143HG cardiac mesoderm enhancer-associated non-coding RNA ncRNA 637.5-4 chr20 35694180 35694551 + 4 NA intron (NR_037570, intron 4 of 13) AluSq2|SINE|Alu 4987 NR_037570 9054 Hs.194692 NM_021100 ENSG00000244005 NFS1 HUSSY-08|IscS|NIFS NFS1 cysteine desulfurase protein-coding 663-11 chr9 27237577 27237884 + 4 NA Intergenic L1MA8|LINE|L1 45063 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 1269.5 chr17 33027941 33028305 + 4 NA intron (NM_183377, intron 4 of 9) intron (NM_183377, intron 4 of 9) 35272 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 1051.5-4 chr4 100664133 100664576 + 4 NA intron (NR_046811, intron 3 of 3) intron (NR_046811, intron 3 of 3) 10759 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 1092.5 chr7 83689592 83689879 + 4 NA Intergenic Intergenic -40596 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 386-3 chr1 109306421 109306535 + 4 NA intron (NM_001265613, intron 1 of 8) intron (NM_001265613, intron 1 of 8) 533 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 570-24 chr8 68153241 68153437 + 4 NA intron (NM_024870, intron 34 of 39) intron (NM_024870, intron 34 of 39) -177034 NM_001349477 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 643.5-13 chr6 145643179 145643364 + 4 NA intron (NM_001368131, intron 2 of 3) intron (NM_001368131, intron 2 of 3) 43606 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 785.5-3 chr19 24337542 24337864 + 4 NA Intergenic ALR/Alpha|Satellite|centr -174256 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 820 chr21 26874747 26875026 + 4 NA Intergenic MLT1H1|LTR|ERVL-MaLR -29477 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 531-6 chr13 77810037 77810321 + 4 NA Intergenic L4_A_Mam|LINE|RTE-X -8758 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 658.5-8 chr4 30818476 30818765 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 98251 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 850.5 chr2 52348771 52349107 + 4 NA intron (NR_135237, intron 8 of 10) L2a|LINE|L2 -21709 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 738-10 chr9 119321745 119322203 + 4 NA intron (NM_014618, intron 1 of 7) intron (NM_014618, intron 1 of 7) 47461 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 447.5-6 chr18 43441002 43441113 + 4 NA Intergenic LTR16A1|LTR|ERVL -163567 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 687.5-4 chr22 29410211 29410443 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21744 NM_145730 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 636-16 chr3 127004387 127004650 + 4 NA intron (NM_032242, intron 3 of 30) intron (NM_032242, intron 3 of 30) 15924 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 623.5 chr1 62440046 62440452 + 4 NA intron (NM_001017415, intron 2 of 8) MamSINE1|SINE|tRNA-RTE 3200 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 608-11 chr2 143423338 143423638 + 4 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 294069 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 706 chr1 115155643 115155901 + 4 NA Intergenic Intergenic -66269 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 698-6 chr14 55848262 55848588 + 4 NA Intergenic Intergenic -51751 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 528-19 chr2 222875683 222875905 + 4 NA intron (NM_001354159, intron 1 of 14) intron (NM_001354159, intron 1 of 14) 14758 NM_001354158 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 748-6 chr3 125230565 125230942 + 4 NA 3' UTR (NM_021964, exon 9 of 9) 3' UTR (NM_021964, exon 9 of 9) -17988 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 771-11 chr8 129405087 129405432 + 4 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 78883 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 960-2 chr21 29449548 29449921 + 4 NA Intergenic Intergenic -46313 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 796-5 chr4 78983036 78983425 + 4 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 11482 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 499-12 chr3 49504286 49504446 + 4 NA intron (NM_001177641, intron 2 of 3) L1MD1|LINE|L1 34234 NM_001165928 1605 Hs.76111 NM_004393 ENSG00000173402 DAG1 156DAG|A3a|AGRNR|DAG|LGMDR16|MDDGA9|MDDGC7|MDDGC9 dystroglycan 1 protein-coding 852-7 chr4 42446668 42447007 + 4 NA intron (NM_001105529, intron 29 of 35) intron (NM_001105529, intron 29 of 35) 49349 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 955.5 chr15 70952835 70953286 + 4 NA intron (NM_017691, intron 8 of 15) L1PA16|LINE|L1 60617 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 934-3 chr8 135801540 135801898 + 4 NA Intergenic Intergenic 344263 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 619.5-8 chr3 67569176 67569455 + 4 NA intron (NM_001177599, intron 2 of 10) L2b|LINE|L2 85299 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 516-8 chr13 33173249 33173498 + 4 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) 12718 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 592.5-2 chr1 214226600 214226889 + 4 NA Intergenic Tigger5b|DNA|TcMar-Tigger -54415 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 846.5 chr1 246436461 246436743 + 4 NA intron (NM_001167740, intron 1 of 11) L1MC4a|LINE|L1 -19190 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 467-16 chr2 179995751 179996039 + 4 NA intron (NM_020943, intron 1 of 19) L1MEb|LINE|L1 11402 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 732-4 chr16 27023192 27023534 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -43564 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 466-3 chr1 68440445 68440589 + 4 NA intron (NM_000329, intron 6 of 13) L2a|LINE|L2 9437 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 1210 chr6 44446936 44447342 + 4 NA 3' UTR (NM_001253, exon 16 of 16) 3' UTR (NM_001253, exon 16 of 16) 11498 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 618-7 chr12 41515781 41516055 + 4 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 78179 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 740-10 chr6 87833880 87834366 + 4 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 49263 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 578-25 chr6 125151623 125151854 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -2035 NM_003287 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 800.5-3 chr22 17556012 17556377 + 4 NA 3' UTR (NM_001290047, exon 19 of 19) 3' UTR (NM_001290047, exon 19 of 19) -7245 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 640-11 chr5 144618883 144619160 + 4 NA Intergenic L1MEf|LINE|L1 413630 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 985 chr5 27338622 27339113 + 4 NA Intergenic Intergenic -133425 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 813-6 chr6 63577215 63577670 + 3.5 NA intron (NM_003463, intron 2 of 5) intron (NM_003463, intron 2 of 5) 5430 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 803-11 chr5 102507568 102507862 + 3.5 NA Intergenic Intergenic -8714 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 828-3 chr6 127168894 127169271 + 3.5 NA intron (NM_032784, intron 4 of 4) L1PA11|LINE|L1 50411 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 576-6 chr17 66273471 66273842 + 3.5 NA Intergenic AluJr4|SINE|Alu -28957 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 549.5-10 chr6 82160994 82161229 + 3.5 NA Intergenic Intergenic -59346 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 820-6 chr7 13962224 13962498 + 3.5 NA intron (NM_001163148, intron 5 of 12) MIR|SINE|MIR 24153 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 766-7 chr4 133506416 133506734 + 3.5 NA Intergenic L1PA8A|LINE|L1 357281 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 753-6 chr2 102391787 102392068 + 3.5 NA intron (NM_003855, intron 9 of 10) L1MC5|LINE|L1 -26863 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 554-12 chr18 40080817 40081046 + 3.5 NA intron (NR_110791, intron 2 of 3) intron (NR_110791, intron 2 of 3) 14645 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 630.5-12 chr7 43955059 43955300 + 3.5 NA 3' UTR (NM_015983, exon 7 of 7) 3' UTR (NM_015983, exon 7 of 7) 28743 NM_015983 51619 Hs.19196 NM_015983 ENSG00000078967 UBE2D4 HBUCE1 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding 430-3 chr1 169952905 169953098 + 3.5 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -59042 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 618-9 chr16 68480581 68480902 + 3.5 NA Intergenic L2b|LINE|L2 -32233 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 337-14 chr18 71931266 71931457 + 3.5 NA Intergenic Intergenic -149135 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 587.5-6 chr11 75873330 75873706 + 3.5 NA intron (NM_003369, intron 3 of 14) intron (NM_003369, intron 3 of 14) 58308 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 462-27 chr3 178944454 178944691 + 3.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -84167 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 371.5-2 chr1 114668196 114668335 + 3.5 NA intron (NM_001256404, intron 1 of 20) intron (NM_001256404, intron 1 of 20) 1784 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 424.5-8 chr14 84983415 84983629 + 3.5 NA Intergenic Intergenic -288410 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 496-19 chr4 67575116 67575339 + 3.5 NA intron (NM_012108, intron 2 of 8) intron (NM_012108, intron 2 of 8) 16500 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 610-8 chr2 84576200 84576498 + 3.5 NA intron (NM_001370, intron 12 of 76) MIRc|SINE|MIR 59894 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 635.5-10 chr4 109438021 109438292 + 3.5 NA intron (NM_001042734, intron 1 of 22) L2a|LINE|L2 -4339 NR_039978 100533182 Hs.518927 NR_039978 ENSG00000247950 SEC24B-AS1 1/2-SBSRNA4 SEC24B antisense RNA 1 ncRNA 438.5-10 chr3 51643272 51643454 + 3.5 NA intron (NM_001322257, intron 14 of 21) intron (NM_001322257, intron 14 of 21) -27812 NM_001278195 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 616.5-18 chr8 88217704 88218015 + 3.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 109624 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 387.5-14 chr2 223900583 223900780 + 3.5 NA intron (NM_020830, intron 5 of 11) intron (NM_020830, intron 5 of 11) 44654 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 606.5-3 chr11 116179645 116179983 + 3.5 NA Intergenic Intergenic -419614 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 900-2 chr16 72602493 72602952 + 3.5 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 62248 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 643-8 chr18 36710662 36711003 + 3.5 NA intron (NM_001281740, intron 18 of 28) intron (NM_001281740, intron 18 of 28) -47414 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 445.5-2 chr11 28906198 28906416 + 3.5 NA Intergenic Intergenic -428759 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 674.5-3 chr15 62450501 62450933 + 3.5 NA Intergenic AluJo|SINE|Alu 107688 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 352 chr1 68644141 68644294 + 3.5 NA Intergenic MIR|SINE|MIR -147135 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 603.5-3 chr2 39624282 39624458 + 3.5 NA Intergenic Intergenic -41128 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 519-12 chr2 75969418 75969582 + 3.5 NA Intergenic L1PB1|LINE|L1 -258585 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 442-19 chr7 3591385 3591608 + 3.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 290244 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1118 chr17 52643227 52643644 + 3.5 NA Intergenic Intergenic -218686 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 607 chr1 30811245 30811590 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X -13235 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 883-3 chr15 94760557 94760967 + 3.5 NA Intergenic Intergenic -94601 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 506-34 chrX 14211493 14211726 + 3.5 NA Intergenic Intergenic -32656 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 867-4 chr7 53493876 53494268 + 3.5 NA Intergenic L1MB8|LINE|L1 317859 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 381-5 chr10 21151832 21151969 + 3.5 NA intron (NM_001173484, intron 2 of 6) L2a|LINE|L2 -22090 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 500.5-11 chr3 95968751 95968972 + 3.5 NA Intergenic Intergenic -285668 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 698-4 chr11 79165327 79165673 + 3.5 NA intron (NM_001098816, intron 3 of 33) L1PB1|LINE|L1 236609 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 544.5-4 chr14 70376811 70377072 + 3.5 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -17258 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 671.5-2 chr18 38226926 38227300 + 3.5 NA Intergenic L1MEf|LINE|L1 569978 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 902.5 chr11 48270643 48271040 + 3.5 NA Intergenic MER41B|LTR|ERV1 6980 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 442-23 chr8 136432260 136432490 + 3.5 NA Intergenic L1M1|LINE|L1 -98423 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 810 chr11 27393202 27393602 + 3.5 NA intron (NM_001346432, intron 1 of 16) intron (NM_001346432, intron 1 of 16) -30154 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 302-36 chr8 134212518 134212649 + 3.5 NA Intergenic THE1A|LTR|ERVL-MaLR 326087 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 602.5-7 chr22 45047575 45048046 + 3.5 NA Intergenic Intergenic -37805 NM_138415 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 631.5 chr1 175877093 175877380 + 3.5 NA promoter-TSS (NR_125964) promoter-TSS (NR_125964) -107 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 460.5-29 chr7 47075975 47076157 + 3.5 NA Intergenic Intergenic -378944 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 598-3 chr16 64729131 64729562 + 3.5 NA Intergenic MER5A1|DNA|hAT-Charlie 392717 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 442-4 chr10 68257965 68258192 + 3.5 NA Intergenic L1MC4|LINE|L1 -25965 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 820-5 chr5 13631333 13631736 + 3.5 NA Intergenic L1PA15|LINE|L1 312946 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 807.5-2 chr2 33844197 33844608 + 3.5 NA intron (NR_126403, intron 1 of 5) L1M5|LINE|L1 -116185 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 1199.5 chr16 7863821 7864373 + 3.5 NA Intergenic L1PA16|LINE|L1 531252 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 501.5-20 chr4 54200952 54201242 + 3.5 NA Intergenic L1MC2|LINE|L1 -28196 NM_001347828 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 563.5-8 chr7 68913713 68914049 + 3.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 683743 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 412-24 chr4 28596956 28597115 + 3.5 NA Intergenic Intergenic -222547 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 652-14 chr8 55008065 55008357 + 3.5 NA Intergenic MamRep605|LTR?|LTR? -93817 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 463 chr1 53909854 53910087 + 3.5 NA exon (NM_000792, exon 4 of 4) exon (NM_000792, exon 4 of 4) 15783 NM_001039715 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 328.5-9 chr12 52739673 52739805 + 3.5 NA Intergenic L1MC5|LINE|L1 -36215 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 656-2 chr1 51453770 51454025 + 3.5 NA intron (NM_001981, intron 8 of 24) AluSx1|SINE|Alu -31802 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 588.5-18 chr9 18656805 18657212 + 3.5 NA intron (NM_052866, intron 7 of 12) intron (NM_052866, intron 7 of 12) 83702 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 624-11 chr6 135490817 135491059 + 3.5 NA intron (NM_017651, intron 3 of 27) L2b|LINE|L2 6802 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 557.5-12 chr5 13559582 13559827 + 3.5 NA Intergenic Intergenic 384776 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 606-2 chr1 185289720 185289940 + 3.5 NA intron (NM_017673, intron 18 of 18) L1MA8|LINE|L1 27413 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 405.5-17 chr4 153387383 153387576 + 3.5 NA intron (NR_045605, intron 6 of 9) AluJr|SINE|Alu 42791 NM_032117 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 648.5-6 chr6 165330668 165331026 + 3.5 NA 3' UTR (NM_001130690, exon 22 of 22) 3' UTR (NM_001130690, exon 22 of 22) -21242 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 430-15 chr18 367319 367517 + 3.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -99371 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 548.5-12 chr20 52572294 52572484 + 3.5 NA Intergenic AluSx|SINE|Alu -48449 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 442.5-11 chr18 76808362 76808529 + 3.5 NA intron (NR_040024, intron 2 of 2) AluJb|SINE|Alu 13850 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 767.5-3 chr2 42026060 42026434 + 3.5 NA Intergenic MIR|SINE|MIR -21774 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 403 chr1 63391805 63391938 + 3.5 NA intron (NM_013339, intron 2 of 14) intron (NM_013339, intron 2 of 14) 24244 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 359-24 chr2 152912453 152912555 + 3.5 NA Intergenic L1PA15|LINE|L1 193867 NR_146429 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 360.5-19 chr4 145663953 145664147 + 3.5 NA Intergenic L1MCb|LINE|L1 -16154 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 573.5-6 chr4 36140358 36140536 + 3.5 NA intron (NR_146894, intron 19 of 32) intron (NR_146894, intron 19 of 32) 103492 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 864.5-2 chr17 68943325 68943673 + 3.5 NA intron (NM_001288986, intron 1 of 38) L1MCc|LINE|L1 11893 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 332.5-16 chr6 132795257 132795421 + 3.5 NA intron (NM_052831, intron 2 of 13) intron (NM_052831, intron 2 of 13) 3298 NM_052831 116843 Hs.347144 NM_052831 ENSG00000146409 SLC18B1 C6orf192|dJ55C23.6 solute carrier family 18 member B1 protein-coding 756-6 chr13 31617185 31617663 + 3.5 NA Intergenic Intergenic -122102 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 595.5 chr1 43739635 43739952 + 3.5 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -12450 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 474-18 chr3 125255408 125255601 + 3.5 NA intron (NM_001348434, intron 6 of 7) AluSz|SINE|Alu -42739 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 588-31 chr6 80061721 80061949 + 3.5 NA Intergenic Intergenic -44775 NM_000056 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 586.5-18 chr8 137150920 137151132 + 3.5 NA Intergenic Intergenic 262562 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 296.5-7 chr10 52870834 52870937 + 3.5 NA Intergenic Intergenic -99185 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 401-16 chr15 94703224 94703468 + 3.5 NA Intergenic Intergenic -152017 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 695 chr10 86551913 86552300 + 3.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -30314 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 541.5-22 chr9 26471160 26471383 + 3.5 NA Intergenic Intergenic 404596 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 375.5-10 chr15 64544457 64544580 + 3.5 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 45098 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 447.5-7 chr2 34102382 34102615 + 3.5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 35272 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 390-11 chr18 11245677 11245853 + 3.5 NA Intergenic Intergenic -97003 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 768.5-3 chr6 168791089 168791374 + 3.5 NA Intergenic Intergenic 173151 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 499-4 chr15 71498469 71498667 + 3.5 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -48668 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 767-6 chr4 153683358 153683624 + 3.5 NA promoter-TSS (NM_001318796) promoter-TSS (NM_001318796) -789 NM_001318789 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 242-34 chr8 136364633 136364781 + 3.5 NA Intergenic ERVL-E-int|LTR|ERVL -166091 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 364-33 chr6 27022099 27022236 + 3.5 NA intron (NR_026775, intron 2 of 2) LTR82A|LTR|ERVL -1861 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 516-6 chr11 105057363 105057749 + 3.5 NA Intergenic Intergenic -12221 NM_001017534 114769 Hs.348365 NM_052889 ENSG00000204397 CARD16 COP|COP1|PSEUDO-ICE caspase recruitment domain family member 16 protein-coding 533.5 chr1 35046033 35046245 + 3.5 NA Intergenic AluJo|SINE|Alu -13647 NM_001289088 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 546-19 chrX 98023602 98023799 + 3.5 NA Intergenic Intergenic -459165 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 699-4 chr13 88511451 88511751 + 3.5 NA Intergenic Intergenic -29228 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 510.5-11 chr7 34291815 34291981 + 3.5 NA Intergenic L1MDa|LINE|L1 -366320 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 1043.5 chr4 30739383 30739831 + 3.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 19238 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 700.5-3 chr9 10346583 10346918 + 3.5 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 266252 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 296.5-24 chr3 197233140 197233264 + 3.5 NA intron (NM_001366216, intron 4 of 23) L1M4|LINE|L1 -49071 NM_001204388 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 736.5-4 chr2 25197868 25198182 + 3.5 NA Intergenic Intergenic -6288 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 502.5-11 chr5 11807873 11808109 + 3.5 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 96455 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 325.5-20 chr21 18249495 18249647 + 3.5 NA intron (NM_001204174, intron 1 of 5) intron (NM_001204174, intron 1 of 5) 3696 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 723.5-3 chr6 56237103 56237481 + 3.5 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 10288 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 664.5-12 chr5 167350104 167350401 + 3.5 NA intron (NM_001122679, intron 2 of 29) intron (NM_001122679, intron 2 of 29) -181851 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 772-4 chr12 72681207 72681607 + 3.5 NA Intergenic LTR37A|LTR|ERV1 -407898 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 728.5 chr13 32310711 32311168 + 3.5 NA intron (NM_001136571, intron 1 of 3) L2|LINE|L2 1015 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 990 chr20 63716868 63717178 + 3.5 NA intron (NM_181485, intron 2 of 6) AluSx|SINE|Alu 8995 NM_032527 84619 Hs.590868 NM_032527 ENSG00000197114 ZGPAT GPATC6|GPATCH6|KIAA1847|ZC3H9|ZC3HDC9|ZIP zinc finger CCCH-type and G-patch domain containing protein-coding 558.5-11 chr2 4480397 4480761 + 3.5 NA Intergenic MSTA|LTR|ERVL-MaLR 175643 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 397-3 chr10 79232773 79232986 + 3.5 NA intron (NM_020338, intron 7 of 24) MIRb|SINE|MIR -114590 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 339.5-27 chr6 161935756 161935901 + 3.5 NA intron (NM_004562, intron 6 of 11) HSMAR2|DNA|TcMar-Mariner 464851 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 354.5-21 chr20 17243368 17243499 + 3.5 NA intron (NM_001201529, intron 1 of 10) AluJo|SINE|Alu 16393 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 518.5-4 chr11 63777641 63777942 + 3.5 NA Intergenic Intergenic -9016 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 535-6 chr11 110688397 110688697 + 3.5 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 23278 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 528-14 chr2 15869220 15869489 + 3.5 NA Intergenic THE1D|LTR|ERVL-MaLR -51045 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 559.5-13 chr22 34606014 34606442 + 3.5 NA Intergenic L2c|LINE|L2 391688 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 376-6 chr14 88879979 88880177 + 3.5 NA non-coding (NR_159362, exon 15 of 15) non-coding (NR_159362, exon 15 of 15) 55427 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 414-39 chr7 103483329 103483550 + 3.5 NA intron (NM_005045, intron 62 of 64) intron (NM_005045, intron 62 of 64) -37232 NM_001321787 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 786.5 chr11 106020491 106020846 + 3.5 NA intron (NM_001318750, intron 1 of 2) intron (NM_001318750, intron 1 of 2) 1572 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 520-9 chr13 53348802 53349181 + 3.5 NA Intergenic MIR|SINE|MIR -197091 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 908-3 chr17 27236159 27236441 + 3.5 NA Intergenic Intergenic 57696 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 963.5 chr4 111511887 111512286 + 3.5 NA Intergenic L1MC5|LINE|L1 -633368 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 767-8 chr9 130441291 130441678 + 3.5 NA Intergenic L1M4|LINE|L1 -3223 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 717.5-2 chr18 2299360 2299708 + 3.5 NA Intergenic L1MEc|LINE|L1 271971 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 772.5-5 chr5 40231380 40231775 + 3.5 NA Intergenic L1M5|LINE|L1 179286 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 705.5-4 chr4 92629403 92629715 + 3.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 325160 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 328.5-34 chr8 119828181 119828331 + 3.5 NA intron (NM_003184, intron 2 of 25) ERVL-B4-int|LTR|ERVL 4585 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 540 chr1 194187525 194187713 + 3.5 NA Intergenic Intergenic 882874 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 335.5-25 chr22 41541731 41541917 + 3.5 NA intron (NM_001018050, intron 1 of 5) intron (NM_001018050, intron 1 of 5) 2646 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 748-4 chr2 78942432 78942709 + 3.5 NA Intergenic L1ME3D|LINE|L1 -83132 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 437-15 chr15 71238144 71238273 + 3.5 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -49149 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 669.5-7 chr22 39284562 39284926 + 3.5 NA Intergenic MIR|SINE|MIR 29167 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 520.5-5 chr10 76737443 76737710 + 3.5 NA Intergenic Intergenic -150468 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 781.5 chr10 9235876 9236289 + 3.5 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -39531 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 627.5-7 chr2 33115413 33115629 + 3.5 NA intron (NM_206943, intron 4 of 33) intron (NM_206943, intron 4 of 33) -19076 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 556-10 chr22 17980948 17981233 + 3.5 NA promoter-TSS (NR_030378) promoter-TSS (NR_030378) -129 NR_030378 693233 NR_030378 ENSG00000207780 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 511.5-23 chr8 75842410 75842631 + 3.5 NA Intergenic L2|LINE|L2 302552 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 588.5-3 chr14 46668610 46668863 + 3.5 NA Intergenic Intergenic -16955 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 760-5 chr4 45728260 45728655 + 3.5 NA Intergenic MER20|DNA|hAT-Charlie 395597 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 700.5-4 chr9 93766125 93766376 + 3.5 NA Intergenic L1MC2|LINE|L1 -53107 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 783-12 chr9 31346944 31347345 + 3.5 NA Intergenic Intergenic 34346 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 567.5-16 chr9 127640060 127640222 + 3.5 NA intron (NM_001032221, intron 1 of 18) AluSx1|SINE|Alu 27864 NM_001032221 6812 Hs.288229 NM_003165 ENSG00000136854 STXBP1 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 syntaxin binding protein 1 protein-coding 454-14 chr2 125929843 125930049 + 3.5 NA Intergenic Intergenic 188039 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 704-7 chr20 31726909 31727263 + 3.5 NA Intergenic AluJb|SINE|Alu -3123 NM_001317921 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 814-5 chr8 126608994 126609381 + 3.5 NA Intergenic L1MB2|LINE|L1 -50709 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 712.5-11 chr7 127475910 127476186 + 3.5 NA promoter-TSS (NR_110024) promoter-TSS (NR_110024) -835 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 642-3 chr18 70538495 70538859 + 3.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 112277 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 649.5-2 chr1 112745089 112745491 + 3.5 NA Intergenic AluSx1|SINE|Alu 24723 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 870.5-2 chr7 28670430 28670823 + 3.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -15507 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 306-26 chr5 150775308 150775404 + 3.5 NA Intergenic LTR37-int|LTR|ERV1 -2590 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 508-4 chr14 50373592 50373857 + 3.5 NA intron (NM_001282236, intron 2 of 8) L1MC3|LINE|L1 23157 NM_004196 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 453 chr1 23804611 23804853 + 3.5 NA intron (NM_000191, intron 7 of 8) L2c|LINE|L2 -3978 NM_001008216 2582 Hs.632380 NM_000403 ENSG00000117308 GALE SDR1E1 UDP-galactose-4-epimerase protein-coding 755.5-2 chr12 26271005 26271337 + 3.5 NA Intergenic MIR3|SINE|MIR 75598 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 511-20 chr5 102212651 102212879 + 3.5 NA Intergenic Intergenic 83519 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 373.5-5 chr11 111165842 111166046 + 3.5 NA Intergenic Intergenic -68626 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 567-11 chr2 54472890 54473111 + 3.5 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 16673 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 564-19 chr4 114573715 114573908 + 3.5 NA Intergenic Intergenic -24591 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 629-2 chr1 244748477 244748751 + 3.5 NA Intergenic LTR56|LTR|ERV1 -86692 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 510-22 chr8 125337201 125337420 + 3.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -93048 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 511-30 chrX 68191111 68191489 + 3.5 NA intron (NM_002547, intron 15 of 24) Charlie17a|DNA|hAT-Charlie 242195 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 578-22 chr5 171150102 171150291 + 3.5 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -159052 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 305.5-2 chr1 78526191 78526340 + 3.5 NA intron (NM_001039585, intron 3 of 3) intron (NM_001039585, intron 3 of 3) 35291 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 477.5-10 chr12 116924218 116924421 + 3.5 NA intron (NM_153348, intron 1 of 10) L1MA5|LINE|L1 13363 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 696.5 chr1 80421887 80422171 + 3.5 NA Intergenic Intergenic -113726 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 507-23 chr4 39085412 39085638 + 3.5 NA intron (NM_199039, intron 3 of 9) intron (NM_199039, intron 3 of 9) 23293 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 374-33 chr6 3773454 3773678 + 3.5 NA Intergenic Intergenic -21554 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 484.5-12 chr2 83570163 83570321 + 3.5 NA Intergenic L1MC|LINE|L1 47428 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 779.5 chr1 175537395 175537688 + 3.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 206054 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 428.5-7 chr12 28648964 28649286 + 3.5 NA Intergenic L1MCa|LINE|L1 -458387 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 663.5-2 chr15 52761752 52762168 + 3.5 NA intron (NM_004498, intron 1 of 1) L2|LINE|L2 18924 NR_073510 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 280.5-16 chr2 121422345 121422514 + 3.5 NA intron (NM_015282, intron 22 of 38) intron (NM_015282, intron 22 of 38) -108451 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 579.5-7 chr20 43315645 43315977 + 3.5 NA Intergenic L2c|LINE|L2 -125905 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 474 chr1 68250327 68250563 + 3.5 NA Intergenic L1ME2z|LINE|L1 -17899 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 1275.5 chr8 139178433 139179296 + 3.5 NA Intergenic LTR2B|LTR|ERV1 -264823 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 493-25 chr7 47070664 47070853 + 3.5 NA Intergenic Intergenic -373636 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 583 chr1 26300129 26300368 + 3.5 NA intron (NM_145345, intron 4 of 14) MIRb|SINE|MIR 6456 NM_001077262 91544 Hs.145061 NM_145345 ENSG00000158062 UBXN11 COA-1|PP2243|SOC|SOCI|UBXD5 UBX domain protein 11 protein-coding 442-15 chr3 145338878 145339089 + 3.5 NA Intergenic Intergenic 730202 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 342.5-33 chr8 92511781 92511889 + 3.5 NA Intergenic Intergenic 143659 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 897.5 chr13 50046121 50046633 + 3.5 NA intron (NR_152566, intron 6 of 13) AluSx1|SINE|Alu 2684 NR_029486 406950 NR_029486 ENSG00000208006 MIR16-1 MIRN16-1|miRNA16-1|mir-16-1 microRNA 16-1 ncRNA 535.5-14 chr3 123800487 123800805 + 3.5 NA intron (NM_001321309, intron 3 of 32) intron (NM_001321309, intron 3 of 32) 83686 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 520-7 chr11 104814890 104815143 + 3.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 83654 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 636-5 chr11 115613473 115613706 + 3.5 NA Intergenic L2a|LINE|L2 -109174 NM_001301044 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 502.5-4 chr12 15457220 15457450 + 3.5 NA intron (NM_030667, intron 1 of 26) MLT2B3|LTR|ERVL -89276 NM_030669 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 762.5-3 chr2 208131527 208131989 + 3.5 NA intron (NR_038437, intron 1 of 2) AluSx|SINE|Alu -1930 NM_020989 1420 Hs.72910 NM_020989 ENSG00000163254 CRYGC CCL|CRYG3|CTRCT2 crystallin gamma C protein-coding 620.5 chr1 35697577 35697854 + 3.5 NA Intergenic L1MB8|LINE|L1 19196 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 899.5-2 chr14 86898700 86899200 + 3.5 NA Intergenic MER20B|DNA|hAT-Charlie -6828 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 677.5-2 chr20 20974596 20974965 + 3.5 NA Intergenic L2b|LINE|L2 131578 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 682-8 chr2 42103716 42103937 + 3.5 NA Intergenic MER39|LTR|ERV1 55805 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 951.5 chr2 69900286 69900688 + 3.5 NA intron (NR_037862, intron 4 of 6) intron (NR_037862, intron 4 of 6) 6531 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 570.5-8 chr3 158693288 158693556 + 3.5 NA TTS (NM_024996) TTS (NM_024996) -20774 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 658-13 chr7 81042265 81042866 + 3.5 NA Intergenic LTR12C|LTR|ERV1 -120176 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 442.5-3 chr10 44983724 44983878 + 3.5 NA intron (NM_032023, intron 4 of 10) intron (NM_032023, intron 4 of 10) -4992 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 385-21 chr3 1701409 1701579 + 3.5 NA Intergenic Intergenic -397309 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 476-15 chr2 22743555 22743819 + 3.5 NA Intergenic L2|LINE|L2 207208 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 673.5-2 chr10 63409049 63409294 + 3.5 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -21404 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 496-3 chr10 76546535 76546764 + 3.5 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -341395 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 555-14 chr20 8550621 8550913 + 3.5 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -280418 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 418.5-7 chr12 22014763 22014956 + 3.5 NA Intergenic Intergenic -31315 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 358.5-24 chr5 81101753 81101887 + 3.5 NA intron (NM_006909, intron 12 of 26) intron (NM_006909, intron 12 of 26) -131500 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 459-18 chr21 29679504 29679757 + 3.5 NA intron (NM_001320621, intron 1 of 13) L2a|LINE|L2 -68545 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 355.5-7 chr14 49447599 49447736 + 3.5 NA Intergenic Intergenic 138713 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 355.5-9 chr18 11332733 11332917 + 3.5 NA Intergenic L1MCa|LINE|L1 -121653 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 531-26 chr4 85811680 85811963 + 3.5 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) -16116 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 579.5-13 chr4 67839010 67839320 + 3.5 NA intron (NM_004262, intron 4 of 9) intron (NM_004262, intron 4 of 9) 44837 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 634.5-15 chr7 113091707 113092033 + 3.5 NA Intergenic Intergenic -4092 NM_001146265 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 345.5-20 chr2 205751288 205751485 + 3.5 NA intron (NM_018534, intron 11 of 15) intron (NM_018534, intron 11 of 15) 68885 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 678-7 chr5 155011922 155012289 + 3.5 NA Intergenic L1ME2|LINE|L1 -1650 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 649-11 chr5 112737071 112737263 + 3.5 NA promoter-TSS (NM_001354898) promoter-TSS (NM_001354898) -718 NM_001354900 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 334-17 chr20 208830 208937 + 3.5 NA Intergenic Intergenic -18375 NM_080831 140881 Hs.112087 NM_080831 ENSG00000125903 DEFB129 C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29 defensin beta 129 protein-coding 460-7 chr11 77101231 77101379 + 3.5 NA intron (NM_004055, intron 3 of 12) L2a|LINE|L2 -1535 NM_006189 4975 Hs.673853 NM_006189 ENSG00000254550 OMP - olfactory marker protein protein-coding 662 chr1 176905103 176905551 + 3.5 NA intron (NM_207108, intron 16 of 21) intron (NM_207108, intron 16 of 21) 124118 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 686.5-5 chr3 107243866 107244206 + 3.5 NA intron (NR_028302, intron 1 of 3) L1M4a1|LINE|L1 3344 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 577-8 chr4 32730139 32730524 + 3.5 NA Intergenic L1MA5|LINE|L1 379293 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 297.5-3 chr1 72952298 72952403 + 3.5 NA Intergenic L1MC1|LINE|L1 -353820 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 599.5-7 chr3 88408371 88408651 + 3.5 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 70055 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 533.5-9 chr2 238400725 238400942 + 3.5 NA TTS (NM_015650) TTS (NM_015650) -26094 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 665-9 chr5 52758589 52758992 + 3.5 NA Intergenic Intergenic -29126 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 405-22 chr4 46331282 46331435 + 3.5 NA intron (NM_001286827, intron 3 of 9) intron (NM_001286827, intron 3 of 9) 58021 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 549-12 chr4 72994443 72994745 + 3.5 NA Intergenic Intergenic 75122 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 377.5-10 chr2 58667264 58667453 + 3.5 NA intron (NR_033873, intron 2 of 13) L2b|LINE|L2 146605 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 745.5-5 chr11 113735775 113736075 + 3.5 NA intron (NM_004724, intron 15 of 15) intron (NM_004724, intron 15 of 15) -29552 NR_110046 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 682-13 chr4 32179921 32180159 + 3.5 NA Intergenic L1M4c|LINE|L1 -157618 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 590 chr11 81788058 81788352 + 3.5 NA Intergenic Intergenic 102631 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 457-20 chr4 46177714 46177944 + 3.5 NA Intergenic L1PA11|LINE|L1 -53775 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 444-3 chr10 32773681 32773872 + 3.5 NA intron (NM_001321115, intron 29 of 43) L1M3b|LINE|L1 127696 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 403-4 chr1 196610687 196610849 + 3.5 NA Intergenic Intergenic -2328 NM_198503 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 406.5-14 chr2 45632787 45632952 + 3.5 NA Intergenic AluJb|SINE|Alu -18806 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 769-3 chr2 31358848 31359249 + 3.5 NA intron (NM_000379, intron 24 of 35) L1MDa|LINE|L1 55694 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 624.5-3 chr10 82794062 82794326 + 3.5 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -561274 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 487.5-20 chr3 72747283 72747452 + 3.5 NA Intergenic L1MEc|LINE|L1 -83118 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 709.5-2 chr2 103578565 103578845 + 3.5 NA Intergenic L1MB7|LINE|L1 -594276 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 419-24 chr4 123060101 123060293 + 3.5 NA intron (NM_001345856, intron 13 of 15) THE1B-int|LTR|ERVL-MaLR 137119 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 647.5 chr11 42513054 42513412 + 3.5 NA Intergenic L1PA15|LINE|L1 -259543 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 916.5-2 chr16 68880818 68881365 + 3.5 NA intron (NM_024562, intron 7 of 17) intron (NM_024562, intron 7 of 17) 37560 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 800-5 chr16 13741783 13742260 + 3.5 NA Intergenic Intergenic -178136 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 564.5 chr1 44184632 44184831 + 3.5 NA Intergenic AluJo|SINE|Alu -28740 NM_019100 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 456-10 chr14 62847629 62847793 + 3.5 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 197747 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 343-29 chr6 131270310 131270533 + 3.5 NA intron (NM_138633, intron 2 of 2) L1ME1|LINE|L1 20017 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 579-22 chr6 69554275 69554579 + 3.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 242039 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 397.5-9 chr14 62017418 62017554 + 3.5 NA intron (NM_001367661, intron 4 of 8) L2a|LINE|L2 89791 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 363-15 chr14 66180962 66181113 + 3.5 NA Intergenic Intergenic -305334 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 635-3 chr1 160664338 160664629 + 3.5 NA Intergenic L2|LINE|L2 -17172 NM_001330754 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 558.5-6 chr12 32503441 32503683 + 3.5 NA intron (NM_001370297, intron 1 of 14) intron (NM_001370297, intron 1 of 14) 1399 NM_001370297 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 1416 chr14 70185619 70186378 + 3.5 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -1110 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 811.5-2 chr2 198671602 198671847 + 3.5 NA Intergenic L1PB4|LINE|L1 -296627 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 1009-2 chr10 95070216 95070574 + 3.5 NA promoter-TSS (NM_001198853) promoter-TSS (NM_001198853) -898 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 326.5-3 chr10 15844158 15844318 + 3.5 NA intron (NM_024948, intron 2 of 14) intron (NM_024948, intron 2 of 14) 16269 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 682-16 chr6 154877357 154877646 + 3.5 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 24141 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 613.5-5 chr2 45298887 45299208 + 3.5 NA Intergenic Intergenic -44106 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 364-24 chr3 141316817 141316942 + 3.5 NA Intergenic Intergenic -7307 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 868 chr1 168634373 168634936 + 3.5 NA Intergenic L1MC5|LINE|L1 58049 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 504.5-7 chr4 133358270 133358503 + 3.5 NA Intergenic L2a|LINE|L2 209092 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 1005 chr3 26169872 26170475 + 3.5 NA Intergenic Intergenic -296478 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 628-2 chr1 103054540 103054727 + 3.5 NA intron (NM_001854, intron 4 of 66) AluSq2|SINE|Alu 53863 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 880-4 chr8 69009367 69009750 + 3.5 NA intron (NR_039986, intron 2 of 4) L1M5|LINE|L1 94632 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 397.5-8 chr14 30263661 30263795 + 3.5 NA Intergenic Intergenic -295395 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 504-3 chr10 15243575 15243879 + 3.5 NA intron (NM_001010924, intron 5 of 7) intron (NM_001010924, intron 5 of 7) -75034 NM_004808 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 608.5-2 chr11 110130415 110130639 + 3.5 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 37135 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 578.5-10 chr4 167698060 167698263 + 3.5 NA Intergenic Intergenic -394376 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 309-16 chr18 2553581 2553753 + 3.5 NA intron (NM_022840, intron 4 of 8) L1MC4a|LINE|L1 17838 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 562-9 chr3 124304175 124304428 + 3.5 NA intron (NM_001024660, intron 6 of 59) intron (NM_001024660, intron 6 of 59) -70031 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 714.5-5 chr5 89751876 89752158 + 3.5 NA Intergenic Intergenic 264703 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 643.5-6 chr2 119894599 119894813 + 3.5 NA intron (NM_002830, intron 9 of 26) intron (NM_002830, intron 9 of 26) -118371 NM_020909 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 454.5-26 chr7 25602526 25602700 + 3.5 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 60527 NR_157822 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 500-15 chr9 83590822 83591068 + 3.5 NA Intergenic Charlie25|DNA|hAT-Charlie -32104 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 437.5-6 chr15 93889950 93890159 + 3.5 NA Intergenic Intergenic 10545 NR_138083 283682 Hs.134687 NR_138083 LINC01579 - long intergenic non-protein coding RNA 1579 ncRNA 505.5-4 chr1 117694283 117694526 + 3.5 NA Intergenic Intergenic 88356 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 597-17 chr3 10817291 10817516 + 3.5 NA intron (NM_001317406, intron 1 of 3) intron (NM_001317406, intron 1 of 3) 1175 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 846.5-3 chr3 103750246 103750526 + 3.5 NA Intergenic L1PA3|LINE|L1 -226270 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 422-12 chr15 79347590 79347749 + 3.5 NA intron (NM_001330376, intron 2 of 2) L1PREC2|LINE|L1 36557 NM_001301203 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 634.5-18 chr8 144345369 144345560 + 3.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -8982 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 437.5-8 chr21 33118409 33118559 + 3.5 NA intron (NR_109961, intron 1 of 2) intron (NR_109961, intron 1 of 2) 5216 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 396-34 chr8 91421882 91422008 + 3.5 NA Intergenic Intergenic 172626 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 576.5-5 chr4 88023519 88023741 + 3.5 NA intron (NR_156488, intron 2 of 13) MIRb|SINE|MIR 15995 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 1157.5 chr8 135429199 135429725 + 3.5 NA Intergenic Intergenic -27994 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 710-12 chr3 116865835 116866161 + 3.5 NA Intergenic Intergenic -15631 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 412 chr1 11552956 11553077 + 3.5 NA Intergenic Intergenic -56515 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 724-2 chr10 82080127 82080623 + 3.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 152545 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 682-7 chr14 65710796 65711274 + 3.5 NA intron (NR_038167, intron 7 of 8) MSTB1|LTR|ERVL-MaLR 239933 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 371-3 chr12 13709782 13709937 + 3.5 NA intron (NM_000834, intron 3 of 12) L1ME2|LINE|L1 270497 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 504-19 chr5 51129920 51130077 + 3.5 NA Intergenic Intergenic -159811 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 491.5-4 chr10 36338337 36338497 + 3.5 NA Intergenic Intergenic 560115 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 522-21 chr20 45666844 45667006 + 3.5 NA intron (NM_147197, intron 2 of 4) intron (NM_147197, intron 2 of 4) 3314 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 760-3 chr17 8516305 8516572 + 3.5 NA intron (NM_001256012, intron 21 of 42) intron (NM_001256012, intron 21 of 42) 80554 NM_030808 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 661.5-2 chr12 5517931 5518241 + 3.5 NA Intergenic Intergenic 23954 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 368-35 chr5 123739526 123739708 + 3.5 NA Intergenic L1MEc|LINE|L1 194200 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 501.5-24 chr6 54340852 54341087 + 3.5 NA intron (NM_014464, intron 4 of 10) intron (NM_014464, intron 4 of 10) 32528 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 473-23 chr7 105620128 105620437 + 3.5 NA exon (NM_020725, exon 9 of 12) exon (NM_020725, exon 9 of 12) -38740 NM_001355529 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 629 chr1 17307568 17307809 + 3.5 NA promoter-TSS (NM_012387).2 promoter-TSS (NM_012387).2 -509 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 740.5-8 chr5 120841026 120841259 + 3.5 NA Intergenic L2|LINE|L2 309678 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 994.5-2 chr15 93898250 93898571 + 3.5 NA intron (NR_138083, intron 3 of 3) intron (NR_138083, intron 3 of 3) 2189 NR_138083 283682 Hs.134687 NR_138083 LINC01579 - long intergenic non-protein coding RNA 1579 ncRNA 495.5-7 chr16 54926663 54926958 + 3.5 NA intron (NR_110453, intron 1 of 5) intron (NR_110453, intron 1 of 5) 1968 NM_001308963 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 388.5-8 chr2 68440797 68440927 + 3.5 NA Intergenic Intergenic 26432 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 840.5-3 chr12 40147981 40148368 + 3.5 NA Intergenic Intergenic -8065 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 409.5-24 chr5 91823621 91823847 + 3.5 NA Intergenic Intergenic -440417 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 750 chr1 60012783 60013122 + 3.5 NA intron (NM_152377, intron 8 of 11) L1M6|LINE|L1 60818 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 460-11 chr18 3725765 3725939 + 3.5 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 119506 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 317.5-35 chr8 26654662 26654808 + 3.5 NA intron (NM_001244604, intron 13 of 13) intron (NM_001244604, intron 13 of 13) 76330 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 914 chr8 129109731 129110406 + 3.5 NA Intergenic Intergenic 131172 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 528.5-6 chr16 61975547 61975791 + 3.5 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 60769 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 662-6 chr3 81473318 81473618 + 3.5 NA Intergenic Intergenic 288177 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 511.5-24 chr8 100477418 100477799 + 3.5 NA Intergenic L1M2|LINE|L1 82151 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 559-21 chr8 142401396 142401613 + 3.5 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 1678 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 537 chr1 36205235 36205448 + 3.5 NA Intergenic MER63B|DNA|hAT-Blackjack -19102 NM_001321473 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 BCLAF2|TRAP150 thyroid hormone receptor associated protein 3 protein-coding 620-5 chr12 39389701 39389981 + 3.5 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 53279 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 540-6 chr10 121278878 121279040 + 3.5 NA Intergenic L1PA8|LINE|L1 252355 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 559-15 chr2 214573008 214573245 + 3.5 NA intron (NR_159945, intron 4 of 4) intron (NR_159945, intron 4 of 4) 62944 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 607-8 chr10 65966202 65966443 + 3.5 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 394897 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 717.5 chr10 106000359 106000726 + 3.5 NA Intergenic Intergenic -139623 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 334-28 chr7 32128584 32128765 + 3.5 NA intron (NM_001322059, intron 3 of 17) L1M6|LINE|L1 -57238 NM_005020 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 975.5-2 chr5 106066974 106067396 + 3.5 NA Intergenic L1MEf|LINE|L1 943829 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 537-20 chr6 160902503 160902743 + 3.5 NA Intergenic AluSx3|SINE|Alu -89104 NM_001363582 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 522-20 chr2 178491466 178491753 + 3.5 NA intron (NM_019091, intron 3 of 7) intron (NM_019091, intron 3 of 7) 11152 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 563-11 chr22 37147441 37147785 + 3.5 NA intron (NM_001346222, intron 1 of 9) MIRb|SINE|MIR 2303 NM_000878 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 458.5-13 chr3 160353445 160353636 + 3.5 NA intron (NM_001190242, intron 7 of 18) intron (NM_001190242, intron 7 of 18) 30226 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 663-8 chr3 182900299 182900649 + 3.5 NA intron (NM_014616, intron 28 of 29) intron (NM_014616, intron 28 of 29) 80064 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 587.5-5 chr11 58053597 58053917 + 3.5 NA intron (NM_001005212, intron 1 of 2) intron (NM_001005212, intron 1 of 2) 22804 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 367-16 chr19 35974819 35974952 + 3.5 NA Intergenic Intergenic -20303 NM_001042631 644096 Hs.356460 NM_001042631 ENSG00000205138 SDHAF1 LYRM8 succinate dehydrogenase complex assembly factor 1 protein-coding 679.5-10 chr8 54177065 54177305 + 3.5 NA Intergenic (CAA)n|Simple_repeat|Simple_repeat 41944 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 789.5-3 chr3 10890433 10890703 + 3.5 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 74340 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 608-13 chr5 107770696 107770896 + 3.5 NA Intergenic Intergenic -99859 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 971.5 chr1 67255459 67255923 + 3.5 NA intron (NM_144701, intron 9 of 10) AluJr|SINE|Alu -51673 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 340-39 chr8 121424018 121424128 + 3.5 NA Intergenic L1MDa|LINE|L1 -215273 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 474.5-8 chr3 179906760 179906974 + 3.5 NA intron (NR_110061, intron 3 of 3) intron (NR_110061, intron 3 of 3) 7330 NR_110060 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 1021.5 chr21 16790643 16791083 + 3.5 NA Intergenic AluSx1|SINE|Alu 200626 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 911-3 chr5 37161667 37161996 + 3.5 NA intron (NM_023073, intron 38 of 51) L1ME4a|LINE|L1 -87215 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 710.5-5 chr8 101383375 101383653 + 3.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 14621 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 647-6 chr15 58972931 58973205 + 3.5 NA Intergenic AluJb|SINE|Alu -14595 NM_001330331 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 305.5-42 chr8 117341022 117341152 + 3.5 NA Intergenic L1MA7|LINE|L1 -179626 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 535-23 chr8 131682655 131682818 + 3.5 NA Intergenic L1MA9|LINE|L1 -221357 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 550.5-13 chr4 155632766 155633056 + 3.5 NA Intergenic Intergenic -33799 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 626-17 chr6 149222849 149223104 + 3.5 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 5050 NM_001292035 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 865-6 chr8 121849669 121849961 + 3.5 NA Intergenic Intergenic -208375 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 967.5 chr1 176538776 176539074 + 3.5 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 75750 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 749.5-2 chr10 18342510 18342829 + 3.5 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) 1960 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 800-3 chr1 109655395 109655782 + 3.5 NA promoter-TSS (NR_024538) promoter-TSS (NR_024538) -488 NR_024538 2948 Hs.348387 NM_000850 ENSG00000168765 GSTM4 GSTM4-4|GTM4 glutathione S-transferase mu 4 protein-coding 606-4 chr17 32719948 32720172 + 3.5 NA intron (NM_015194, intron 15 of 21) intron (NM_015194, intron 15 of 21) 157064 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 818.5-3 chr3 62072806 62073131 + 3.5 NA intron (NM_002841, intron 4 of 29) L1MC4|LINE|L1 245979 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 442.5 chr1 243901505 243901819 + 3.5 NA Intergenic Intergenic -15740 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 799 chr13 87468793 87469168 + 3.5 NA intron (NR_033829, intron 3 of 5) L1MCa|LINE|L1 149760 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 726.5-8 chr9 105986806 105987230 + 3.5 NA Intergenic MIRb|SINE|MIR 292477 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 394-12 chr17 75962199 75962410 + 3.5 NA intron (NM_004035, intron 2 of 13) intron (NM_004035, intron 2 of 13) 16862 NM_007292 51 Hs.464137 NM_004035 ENSG00000161533 ACOX1 ACOX|PALMCOX|SCOX acyl-CoA oxidase 1 protein-coding 936.5-2 chr6 69313720 69314035 + 3.5 NA intron (NM_001704, intron 20 of 31) L1MA8|LINE|L1 482589 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 512-8 chr14 60865716 60865960 + 3.5 NA intron (NM_002431, intron 6 of 7) L2|LINE|L2 115241 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 553.5-6 chr16 56165677 56165957 + 3.5 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 25277 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 417-16 chr12 106554345 106554563 + 3.5 NA intron (NR_040246, intron 1 of 3) intron (NR_040246, intron 1 of 3) -28453 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 319.5-6 chr12 16202053 16202162 + 3.5 NA intron (NM_001170798, intron 7 of 8) L1MA7|LINE|L1 75578 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 619-14 chrX 70093010 70093355 + 3.5 NA Intergenic Intergenic 30725 NM_207320 139562 Hs.447381 NM_207320 ENSG00000189401 OTUD6A DUBA2|HSHIN6 OTU deubiquitinase 6A protein-coding 346-4 chr1 207167866 207167993 + 3.5 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 63696 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 501-7 chr14 69445999 69446202 + 3.5 NA intron (NM_001252148, intron 3 of 5) L1MC4|LINE|L1 -38628 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 668-8 chr2 37061737 37061971 + 3.5 NA intron (NM_019024, intron 11 of 35) intron (NM_019024, intron 11 of 35) 22518 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 571-3 chr11 15798430 15798720 + 3.5 NA Intergenic Intergenic 154690 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 356.5-39 chr8 59306648 59306766 + 3.5 NA Intergenic Intergenic 187497 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 589.5-6 chr2 17941443 17941801 + 3.5 NA Intergenic L2a|LINE|L2 62955 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 569.5-15 chr7 13609944 13610200 + 3.5 NA Intergenic Intergenic 376442 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 759-2 chr11 82045067 82045511 + 3.5 NA intron (NR_120571, intron 5 of 7) Tigger1|DNA|TcMar-Tigger -154453 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 402.5-10 chr16 46628943 46629090 + 3.5 NA Intergenic Intergenic -7637 NM_001324318 79801 Hs.123253 NM_024745 ENSG00000171241 SHCBP1 PAL SHC binding and spindle associated 1 protein-coding 528.5-12 chr21 23464005 23464285 + 3.5 NA Intergenic Intergenic -79310 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 437-36 chr7 55552362 55552571 + 3.5 NA intron (NM_030796, intron 1 of 4) MIRb|SINE|MIR 300 NM_001284282 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 582-18 chr6 27384297 27384863 + 3.5 NA intron (NM_001322288, intron 1 of 3) L1MB4|LINE|L1 -4138 NM_001322293 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 437.5-2 chr1 222632469 222632608 + 3.5 NA intron (NM_198551, intron 5 of 27) intron (NM_198551, intron 5 of 27) -11765 NM_001324065 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 466.5-8 chr15 39823491 39823758 + 3.5 NA intron (NM_001271854, intron 1 of 3) L2a|LINE|L2 5652 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 822.5 chr1 240658128 240658419 + 3.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -46118 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 500-8 chr2 122787539 122787784 + 3.5 NA Intergenic LTR16|LTR|ERVL 285820 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 837.5-4 chr5 124897877 124898366 + 3.5 NA Intergenic Tigger9a|DNA|TcMar-Tigger -138710 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 804.5-3 chr2 150538684 150539093 + 3.5 NA Intergenic Intergenic 33333 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 362.5-27 chr6 18626093 18626258 + 3.5 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 54391 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 321.5-13 chr14 28800764 28801011 + 3.5 NA Intergenic Intergenic -15100 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 606-10 chr6 61195422 61195618 + 3.5 NA Intergenic MER52-int|LTR|ERV1 -378610 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 679-16 chr8 87167657 87167952 + 3.5 NA intron (NM_173538, intron 4 of 10) Tigger3a|DNA|TcMar-Tigger 301389 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 362.5-11 chr12 79772512 79772655 + 3.5 NA TTS (NM_001143886) TTS (NM_001143886) -81486 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 819.5 chr12 29619260 29619658 + 3.5 NA intron (NM_001367875, intron 8 of 19) intron (NM_001367875, intron 8 of 19) -119766 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 661.5-4 chr2 57706267 57706567 + 3.5 NA Intergenic Intergenic -201234 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 485.5-19 chr6 148242844 148243006 + 3.5 NA Intergenic Intergenic -29403 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 402.5-5 chr12 111013112 111013290 + 3.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -20964 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 319.5-17 chr20 61040130 61040283 + 3.5 NA Intergenic Intergenic -38858 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 686-2 chr1 104900453 104900839 + 3.5 NA Intergenic Intergenic 718289 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 992 chr7 46816185 46816566 + 3.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -119253 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 694-2 chr12 49625985 49626278 + 3.5 NA intron (NM_012272, intron 1 of 24) intron (NM_012272, intron 1 of 24) 2511 NM_012272 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 407.5-10 chr17 59068140 59068259 + 3.5 NA intron (NR_148346, intron 9 of 23) intron (NR_148346, intron 9 of 23) 38681 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 707.5-5 chr7 1992337 1992705 + 3.5 NA intron (NM_001013837, intron 14 of 18) intron (NM_001013837, intron 14 of 18) -51950 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 876-4 chr8 80571940 80572355 + 3.5 NA Intergenic MIR3|SINE|MIR 85921 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 642-8 chr21 34617202 34617453 + 3.5 NA Intergenic L1MB7|LINE|L1 -2214 NM_004414 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 465.5-6 chr13 40314345 40314538 + 3.5 NA Intergenic Intergenic -93939 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 656-4 chr12 121112663 121112947 + 3.5 NA Intergenic L1MB5|LINE|L1 -20071 NM_002562 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 458.5-20 chr9 137646698 137646856 + 3.5 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 27772 NM_001145527 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 365-36 chr8 127139757 127139878 + 3.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -57596 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 741-4 chr6 118824832 118825251 + 3.5 NA intron (NM_017696, intron 11 of 11) intron (NM_017696, intron 11 of 11) 42333 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 396.5-28 chr5 154778479 154778667 + 3.5 NA intron (NM_001367719, intron 1 of 18) intron (NM_001367719, intron 1 of 18) 21419 NM_001367719 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 473-26 chr8 97547648 97547840 + 3.5 NA Intergenic L2c|LINE|L2 -96440 NM_001363137 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 419.5-7 chr13 99441401 99441552 + 3.5 NA Intergenic Intergenic 57830 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 484-22 chr2 112475515 112475779 + 3.5 NA Intergenic L4_B_Mam|LINE|RTE-X -6509 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 453-21 chr3 7073576 7073840 + 3.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -179691 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 723-11 chr8 130774109 130774344 + 3.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 266683 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 461.5-17 chr9 90521771 90521955 + 3.5 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 60883 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 763.5-2 chr10 75261047 75261348 + 3.5 NA Intergenic LTR16C|LTR|ERVL -25240 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 871.5-3 chrX 41219099 41219575 + 3.5 NA intron (NM_001039591, intron 38 of 44) intron (NM_001039591, intron 38 of 44) -56402 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 517-5 chr17 69867267 69867504 + 3.5 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -94322 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 382-2 chr1 229347015 229347174 + 3.5 NA Intergenic MER1B|DNA|hAT-Charlie -4047 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 705-10 chr8 78164693 78165243 + 3.5 NA Intergenic L1MB3|LINE|L1 -351372 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 597-12 chr1_KI270709v1_random 14529 14740 + 3.5 NA NA Intergenic NA NA 516-27 chr7 46786334 46786595 + 3.5 NA Intergenic Intergenic -89342 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 866.5-3 chr2 22869897 22870175 + 3.5 NA Intergenic MIRc|SINE|MIR 333557 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 840.5-2 chr10 52447885 52448269 + 3.5 NA Intergenic Intergenic 7195 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 523-19 chr3 144073611 144073802 + 3.5 NA Intergenic Intergenic 100625 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 467.5-18 chr7 53482612 53482839 + 3.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 329206 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 823.5-2 chr3 115547367 115547692 + 3.5 NA Intergenic MIRb|SINE|MIR -75981 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 508-20 chr3 46646182 46646405 + 3.5 NA Intergenic MIRb|SINE|MIR 33768 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 299.5-4 chr10 22041429 22041574 + 3.5 NA Intergenic L1ME4a|LINE|L1 -37771 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 903 chr10 49566223 49566513 + 3.5 NA Intergenic L1PA13|LINE|L1 -26830 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 305.5-36 chr7 30222681 30222831 + 3.5 NA Intergenic Intergenic -61841 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 436.5-5 chr16 118095 118320 + 3.5 NA intron (NM_001077350, intron 4 of 13) intron (NM_001077350, intron 4 of 13) 20466 NM_001077350 8131 Hs.19699 NM_012075 ENSG00000103148 NPRL3 C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11 NPR3 like, GATOR1 complex subunit protein-coding 1009 chr1 116279257 116279587 + 3.5 NA Intergenic Intergenic -93822 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 441-26 chr3 47131049 47131182 + 3.5 NA intron (NR_146158, intron 1 of 21) L3|LINE|CR1 32862 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 521-17 chr7 780126 780352 + 3.5 NA intron (NR_075098, intron 12 of 12) intron (NR_075098, intron 12 of 12) -35318 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 307.5-41 chr8 121901297 121901390 + 3.5 NA Intergenic Intergenic -259903 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 506.5-3 chr10 84498878 84499098 + 3.5 NA intron (NM_001284240, intron 9 of 9) intron (NM_001284240, intron 9 of 9) 73819 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 729.5-3 chr21 32209915 32210208 + 3.5 NA Intergenic MIRc|SINE|MIR 68988 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 675-9 chr5 54679251 54679692 + 3.5 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 23853 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 417.5-25 chr8 130141092 130141234 + 3.5 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -56395 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 679.5-3 chr13 93036825 93037224 + 3.5 NA Intergenic Intergenic -8317 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 751-5 chr4 111993464 111993904 + 3.5 NA Intergenic MIR|SINE|MIR -151770 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 826 chr11 47366662 47367024 + 3.5 NA intron (NM_001080547, intron 2 of 4) (AAAAG)n|Simple_repeat|Simple_repeat 11704 NM_003120 6688 Hs.502511 NM_003120 ENSG00000066336 SPI1 OF|PU.1|SFPI1|SPI-1|SPI-A Spi-1 proto-oncogene protein-coding 506-6 chr11 10295336 10295543 + 3.5 NA Intergenic Intergenic -1232 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 615.5-3 chr12 50509888 50510224 + 3.5 NA intron (NM_173602, intron 1 of 37) MARNA|DNA|TcMar-Mariner 5071 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 516-28 chr7 118466179 118466420 + 3.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 241595 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 1074 chr21 26037217 26037668 + 3.5 NA intron (NM_001136131, intron 5 of 15) L1MA5A|LINE|L1 102948 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 874.5-3 chr3 46351868 46352279 + 3.5 NA Intergenic Intergenic -1671 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 698-9 chr20 32616725 32616948 + 3.5 NA Intergenic L2a|LINE|L2 29357 NR_034152 149950 Hs.516980 NM_001010976 ENSG00000204393 NOL4L-DT - NOL4L divergent transcript ncRNA 367.5-23 chr3 189124393 189124521 + 3.5 NA Intergenic Intergenic -47514 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 714.5-4 chr2 78473667 78474137 + 3.5 NA Intergenic L1MA4|LINE|L1 -71629 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 782.5-4 chr7 108924744 108925115 + 3.5 NA Intergenic L1M1|LINE|L1 -40342 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 411-15 chr18 70164932 70165070 + 3.5 NA intron (NM_001318520, intron 14 of 47) L1MEd|LINE|L1 40686 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 471.5-8 chr12 94845644 94845813 + 3.5 NA Intergenic MIR3|SINE|MIR 11274 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 441-30 chr4 162948833 162949154 + 3.5 NA Intergenic Tigger3|DNA|TcMar-Tigger 144635 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 831-3 chr2 184641476 184642016 + 3.5 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 43217 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 582-12 chr16 12188740 12189042 + 3.5 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 212157 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 357-29 chr3 142784380 142784557 + 3.5 NA intron (NM_001251845, intron 6 of 12) MIR|SINE|MIR 60044 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 975-2 chr14 81483401 81483891 + 3.5 NA intron (NM_005065, intron 19 of 20) Charlie2a|DNA|hAT-Charlie -33489 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 525-18 chr3 59278549 59278794 + 3.5 NA Intergenic L2b|LINE|L2 -228639 NM_001351534 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 618.5-4 chr15 65103566 65103914 + 3.5 NA intron (NM_001163692, intron 1 of 4) L2a|LINE|L2 2619 NM_001163692 390595 Hs.659256 NM_001163692 ENSG00000246922 UBAP1L UBAP-1L ubiquitin associated protein 1 like protein-coding 821-2 chr17 60640153 60640606 + 3.5 NA intron (NM_003620, intron 3 of 5) intron (NM_003620, intron 3 of 5) -37472 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 530-8 chr12 29603200 29603490 + 3.5 NA intron (NM_001367875, intron 9 of 19) intron (NM_001367875, intron 9 of 19) -103652 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 557-16 chr4 22724754 22724992 + 3.5 NA intron (NR_102357, intron 1 of 4) L1ME3E|LINE|L1 10784 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 660.5-5 chr2 120996364 120996707 + 3.5 NA Intergenic AluJo|SINE|Alu 204254 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 405-38 chr9 22833849 22834105 + 3.5 NA Intergenic HERVL-int|LTR|ERVL 187777 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 531.5-9 chr5 40589769 40590077 + 3.5 NA Intergenic Intergenic -89992 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 585.5-3 chr2 11103677 11104012 + 3.5 NA intron (NR_040080, intron 8 of 8) intron (NR_040080, intron 8 of 8) 28332 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 531 chr1 89842229 89842490 + 3.5 NA intron (NM_018103, intron 1 of 2) MIRb|SINE|MIR 20420 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 1083.5 chr7 21482743 21483365 + 3.5 NA intron (NM_003112, intron 5 of 5) L1M5|LINE|L1 11996 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 618.5-3 chr10 106665398 106665728 + 3.5 NA intron (NM_001206569, intron 17 of 25) L1MC5a|LINE|L1 499143 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 623-9 chr8 84354131 84354422 + 3.5 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -61208 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 524-5 chr14 30841904 30842203 + 3.5 NA Intergenic Intergenic -32482 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 423-20 chr2 43538822 43538946 + 3.5 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 57090 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 360.5-15 chr3 34786225 34786461 + 3.5 NA Intergenic L1ME3A|LINE|L1 607680 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 518-9 chr14 66000655 66000829 + 3.5 NA Intergenic Intergenic -485629 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 745.5-3 chr1 220087583 220087819 + 3.5 NA intron (NM_001286150, intron 1 of 7) L1M5|LINE|L1 2087 NM_006085 10380 Hs.406134 NM_006085 ENSG00000162813 BPNT1 HEL20|PIP 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding 568-11 chr3 177496109 177496356 + 3.5 NA intron (NR_047568, intron 1 of 3) LTR40a|LTR|ERVL 54311 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 696.5-5 chr5 110500584 110500909 + 3.5 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 13169 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 335-6 chr11 96617585 96617739 + 3.5 NA Intergenic ERVL-E-int|LTR|ERVL 109237 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1078 chr3 6634212 6634760 + 3.5 NA intron (NR_110123, intron 3 of 3) intron (NR_110123, intron 3 of 3) 170963 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 488-21 chr8 144519284 144519467 + 3.5 NA intron (NM_001272036, intron 2 of 4) intron (NM_001272036, intron 2 of 4) 1383 NM_001272036 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 508-26 chrX 117341858 117342050 + 3.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -524094 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 681-5 chr5 100165984 100166311 + 3.5 NA Intergenic Intergenic 222107 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 929-2 chr15 62628014 62628279 + 3.5 NA Intergenic Intergenic 17035 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 985-2 chr7 103483699 103484103 + 3.5 NA intron (NM_005045, intron 61 of 64) AluSx|SINE|Alu -37694 NM_001321787 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 687-7 chr2 5770325 5770603 + 3.5 NA Intergenic Intergenic 42132 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 952-3 chr6 35669142 35669659 + 3.5 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) -4611 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 756-4 chr11 17402191 17402687 + 3.5 NA intron (NR_147094, intron 29 of 37) intron (NR_147094, intron 29 of 37) -13093 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 755-10 chr9 28100718 28101013 + 3.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -526999 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 332.5-21 chr7 45615787 45615927 + 3.5 NA intron (NM_001281768, intron 4 of 9) L1M4c|LINE|L1 41489 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 476-5 chr10 28086200 28086370 + 3.5 NA intron (NR_134518, intron 11 of 16) L1PA8|LINE|L1 -12907 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 519-6 chr13 60437953 60438155 + 3.5 NA intron (NM_001146070, intron 1 of 13) L2c|LINE|L2 40834 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 983.5 chr20 43288620 43289060 + 3.5 NA Intergenic MER1A|DNA|hAT-Charlie -98934 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 520-19 chr4 54218342 54218585 + 3.5 NA Intergenic Intergenic -10830 NM_001347828 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 648-15 chr7 20767155 20767358 + 3.5 NA Intergenic Intergenic 19630 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 314-36 chr6 156628095 156628266 + 3.5 NA Intergenic L1ME4a|LINE|L1 -149675 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 583.5-12 chr5 57726563 57726961 + 3.5 NA Intergenic FLAM_A|SINE|Alu 76102 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 674-7 chr5 30038262 30038906 + 3.5 NA Intergenic Intergenic 158024 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 446-36 chr8 103832074 103832207 + 3.5 NA intron (NR_145711, intron 1 of 21) L1MEf|LINE|L1 12920 NM_001348500 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 655.5-9 chr2 145860976 145861340 + 3.5 NA Intergenic Intergenic -725899 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 462-32 chr5 106599433 106599594 + 3.5 NA Intergenic Intergenic 411501 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 831-4 chr6 123168797 123169262 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X 172794 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 828.5-2 chr13 77968432 77968846 + 3.5 NA intron (NM_000115, intron 1 of 7) L2a|LINE|L2 6888 NM_000115 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 569-9 chr2 120722802 120723175 + 3.5 NA Intergenic Intergenic -12880 NM_001371271 394.5-24 chr6 87916933 87917325 + 3.5 NA Intergenic Intergenic -130712 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 413-20 chr2 140728665 140728854 + 3.5 NA intron (NM_018557, intron 35 of 90) MIR|SINE|MIR -142074 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 758.5 chr12 53976624 53976972 + 3.5 NA 3' UTR (NM_014212, exon 2 of 2) 3' UTR (NM_014212, exon 2 of 2) -1842 NR_047517 100124700 Hs.197076 NR_003716 ENSG00000228630 HOTAIR HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 HOX transcript antisense RNA ncRNA 460-18 chr3 174058887 174059062 + 3.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -138178 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 590-6 chr17 49515056 49515279 + 3.5 NA TTS (NM_002507) TTS (NM_002507) 4350 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 492-11 chr14 92176157 92176331 + 3.5 NA Intergenic AluJb|SINE|Alu 54275 NM_001322271 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 536-8 chr18 52332024 52332234 + 3.5 NA Intergenic L3|LINE|CR1 -8068 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 701-3 chr11 113641869 113642184 + 3.5 NA Intergenic Intergenic 64282 NM_001288752 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 602.5-12 chrX 67953494 67953806 + 3.5 NA Intergenic Intergenic 409027 NM_001348061 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 365-38 chr9 11858063 11858196 + 3.5 NA Intergenic Intergenic -835256 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 620-14 chr4 93623010 93623211 + 3.5 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -205643 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 396.5-11 chr17 30455891 30456111 + 3.5 NA intron (NM_001304, intron 15 of 20) intron (NM_001304, intron 15 of 20) -21407 NM_004871 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 516.5-13 chr9 28251837 28252054 + 3.5 NA intron (NM_152570, intron 5 of 6) MIRc|SINE|MIR 467360 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 476-16 chr2 41073281 41073426 + 3.5 NA Intergenic L1MDa|LINE|L1 -560918 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 572.5-3 chr17 69481105 69481327 + 3.5 NA intron (NR_145982, intron 1 of 1) L1MB2|LINE|L1 4316 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 335.5-11 chr14 62434700 62434795 + 3.5 NA Intergenic L1MEc|LINE|L1 -294774 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 446-28 chr5 37571812 37571963 + 3.5 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 192569 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 378.5-13 chr18 75407690 75407873 + 3.5 NA Intergenic Intergenic 19922 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 307-16 chr2 136794597 136794720 + 3.5 NA intron (NM_001316349, intron 1 of 27) L1ME1|LINE|L1 29113 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 571-15 chr4 6696617 6696780 + 3.5 NA intron (NM_005980, intron 1 of 1) intron (NM_005980, intron 1 of 1) 2820 NM_005980 6286 Hs.2962 NM_005980 ENSG00000163993 S100P MIG9 S100 calcium binding protein P protein-coding 413-15 chr18 71716225 71716418 + 3.5 NA Intergenic L1MC3|LINE|L1 65905 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 632.5-2 chr14 38147990 38148297 + 3.5 NA Intergenic MER4D1|LTR|ERV1 -59761 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 639-10 chr2 157002829 157003128 + 3.5 NA Intergenic L2a|LINE|L2 -254727 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 531.5 chr1 87708103 87708310 + 3.5 NA Intergenic MIRc|SINE|MIR -336551 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 727.5 chr1 218001752 218002064 + 3.5 NA Intergenic L2b|LINE|L2 -41597 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 591-6 chr2 28017950 28018174 + 3.5 NA intron (NM_199193, intron 5 of 13) L1PB1|LINE|L1 21695 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 712.5-6 chr2 39692936 39693173 + 3.5 NA intron (NM_152390, intron 1 of 3) AluYj4|SINE|Alu 27137 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 490.5-7 chr2 80155430 80155765 + 3.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 149155 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 495.5-15 chr6 138841547 138841863 + 3.5 NA intron (NM_001077706, intron 5 of 21) L1MEg|LINE|L1 45594 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 579-26 chr8 117000688 117000920 + 3.5 NA intron (NM_001172811, intron 2 of 9) MIRb|SINE|MIR 49829 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 597-10 chr17 66231593 66231964 + 3.5 NA Intergenic L1MC4|LINE|L1 -2363 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 661 chr1 229230638 229231055 + 3.5 NA Intergenic Intergenic -40216 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 564-10 chr17 28394921 28395121 + 3.5 NA 3' UTR (NM_080669, exon 5 of 5) 3' UTR (NM_080669, exon 5 of 5) 11191 NM_001242366 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 468-11 chr15 63838165 63838309 + 3.5 NA Intergenic MER47B|DNA|TcMar-Tigger -4289 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 379-5 chr1 168895429 168895616 + 3.5 NA Intergenic L1ME3G|LINE|L1 108581 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 583.5-13 chr5 127794003 127794272 + 3.5 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 90748 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 421-12 chr15 60669776 60670017 + 3.5 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -11673 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 423-28 chr4 78376057 78376199 + 3.5 NA intron (NM_001166133, intron 26 of 41) intron (NM_001166133, intron 26 of 41) 87143 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 755.5-3 chr14 101266086 101266409 + 3.5 NA Intergenic L1PA2|LINE|L1 141675 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 794 chr14 47185900 47186251 + 3.5 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 157171 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 462-16 chr14 82642016 82642237 + 3.5 NA promoter-TSS (NR_146650) promoter-TSS (NR_146650) -506 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 625-9 chr20 51345854 51346116 + 3.5 NA Intergenic Intergenic 106992 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 452.5-8 chr2 9208593 9208787 + 3.5 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 1878 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 546-9 chr20 56196027 56196291 + 3.5 NA Intergenic Intergenic -52573 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 389.5-16 chr19 33854818 33854947 + 3.5 NA Intergenic Intergenic 58012 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 821-4 chr4 118920322 118920658 + 3.5 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 31636 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 292.5-23 chr5 2998181 2998283 + 3.5 NA Intergenic Intergenic 80378 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 452-3 chr10 32606688 32606865 + 3.5 NA intron (NM_001321115, intron 19 of 43) MSTB-int|LTR|ERVL-MaLR 160636 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 616.5-2 chr1 168411131 168411450 + 3.5 NA intron (NR_037851, intron 3 of 3) AluJr|SINE|Alu 11366 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 390.5-3 chr11 26481281 26481428 + 3.5 NA intron (NM_001313727, intron 1 of 23) intron (NM_001313727, intron 1 of 23) 7452 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 908.5 chr22 37582586 37582864 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X -2638 NM_006498 3957 Hs.531776 NM_006498 ENSG00000100079 LGALS2 HL14 galectin 2 protein-coding 496.5-8 chr2 36454768 36454976 + 3.5 NA intron (NM_016441, intron 4 of 16) intron (NM_016441, intron 4 of 16) 99094 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 721.5-7 chr7 78881859 78882235 + 3.5 NA intron (NM_001301128, intron 2 of 20) L1PA16|LINE|L1 -126941 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 399.5-28 chr8 113717571 113717783 + 3.5 NA Intergenic HERV16-int|LTR|ERVL -280738 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 714-6 chr6 147292807 147293289 + 3.5 NA intron (NM_139244, intron 9 of 25) Tigger3a|DNA|TcMar-Tigger -88434 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 815.5 chr10 91458985 91459344 + 3.5 NA intron (NM_182765, intron 2 of 20) L1MD1|LINE|L1 48879 NM_001284274 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 799-2 chr2 220943531 220943873 + 3.5 NA Intergenic AluSg7|SINE|Alu 628602 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 678.5-8 chr7 54003802 54004024 + 3.5 NA Intergenic L3|LINE|CR1 -191982 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 750.5-4 chr2 14061469 14062005 + 3.5 NA Intergenic L2a|LINE|L2 339221 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 684-6 chr2 184978185 184978427 + 3.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 188766 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 416-6 chr10 124754828 124754958 + 3.5 NA Intergenic Intergenic -10515 NM_014661 9679 Hs.129195 NM_014661 ENSG00000189319 FAM53B KIAA0140|bA12J10.2|smp family with sequence similarity 53 member B protein-coding 655.5-8 chr17 60981895 60982194 + 3.5 NA intron (NM_001330413, intron 14 of 25) (TA)n|Simple_repeat|Simple_repeat 304193 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 581-16 chr6 117498597 117498876 + 3.5 NA intron (NM_173674, intron 1 of 14) L1MC5a|LINE|L1 16062 NM_001366458 285761 Hs.658304 NM_173674 ENSG00000164465 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 355-19 chr2 86696239 86696355 + 3.5 NA intron (NM_001198954, intron 1 of 7) intron (NM_001198954, intron 1 of 7) -23994 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 522-4 chr10 26414853 26415056 + 3.5 NA Intergenic AluJr|SINE|Alu -23387 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 254.5-16 chr16 6167172 6167341 + 3.5 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 147553 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 337.5-31 chrX 77616228 77616371 + 3.5 NA intron (NM_000489, intron 22 of 34) intron (NM_000489, intron 22 of 34) 168910 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 683-5 chr8 55782540 55782879 + 3.5 NA intron (NM_001317902, intron 1 of 10) intron (NM_001317902, intron 1 of 10) 9263 NM_024831 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 467-3 chr1 115402392 115402643 + 3.5 NA Intergenic Intergenic -64281 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 467.5-6 chr16 57075447 57075600 + 3.5 NA intron (NM_001330552, intron 38 of 47) MER5A1|DNA|hAT-Charlie -17060 NM_152727 221184 Hs.339809 NM_152727 ENSG00000140848 CPNE2 COPN2|CPN2 copine 2 protein-coding 600.5-2 chr12 5512866 5513151 + 3.5 NA Intergenic L2b|LINE|L2 18876 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 898.5 chr14 58248751 58249220 + 3.5 NA intron (NM_002788, intron 2 of 10) AluSp|SINE|Alu 4142 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 584-6 chr14 69759799 69760089 + 3.5 NA Intergenic Intergenic -7198 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 437-43 chr9 87696264 87696484 + 3.5 NA intron (NM_004938, intron 21 of 25) intron (NM_004938, intron 21 of 25) -29745 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 620-13 chr4 52115150 52115458 + 3.5 NA Intergenic Intergenic 64000 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 958.5-2 chr18 64034789 64035273 + 3.5 NA Intergenic L2c|LINE|L2 64950 NM_001348370 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 841-2 chr2 210346513 210346918 + 3.5 NA intron (NR_110606, intron 1 of 4) AluSc|SINE|Alu 22003 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 578.5-15 chr8 124955260 124955444 + 3.5 NA Intergenic AluSz|SINE|Alu 13344 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 609-5 chr2 39954437 39954731 + 3.5 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 36950 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 529-6 chr14 71728498 71728769 + 3.5 NA intron (NM_001354286, intron 20 of 24) intron (NM_001354286, intron 20 of 24) 142335 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 856-10 chr5 160482584 160482963 + 3.5 NA intron (NR_132748, intron 1 of 1) MER4A1_|LTR|ERV1 -2579 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 591.5-7 chr4 170078330 170078513 + 3.5 NA intron (NM_182662, intron 5 of 13) intron (NM_182662, intron 5 of 13) 11535 NM_016228 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 549-3 chr1 219817908 219818208 + 3.5 NA Intergenic Intergenic 110593 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 466.5-7 chr14 72896737 72896926 + 3.5 NA Intergenic AluSq|SINE|Alu -2715 NM_001280543 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 896.5-3 chr2 108887221 108887739 + 3.5 NA Intergenic L1MA4A|LINE|L1 100709 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 434.5-20 chr8 117627367 117627546 + 3.5 NA Intergenic MER58A|DNA|hAT-Charlie 106743 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 443-35 chr7 107370230 107370647 + 3.5 NA intron (NM_181733, intron 8 of 20) L1MC4|LINE|L1 -99619 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 462-33 chr5 116475899 116476066 + 3.5 NA intron (NM_001300780, intron 15 of 19) intron (NM_001300780, intron 15 of 19) 28484 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 475.5-9 chr2 74904715 74904890 + 3.5 NA Intergenic L1ME5|LINE|L1 -4329 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 414-45 chr8 127495646 127495915 + 3.5 NA Intergenic MIRc|SINE|MIR -13641 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 397.5-29 chr5 156217140 156217281 + 3.5 NA Intergenic Intergenic -109547 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 802 chr13 32189413 32189712 + 3.5 NA intron (NM_023037, intron 28 of 60) L1ME3A|LINE|L1 122392 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 478-16 chr2 100809621 100809796 + 3.5 NA Intergenic Intergenic -10431 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 392-27 chr4 23594285 23594451 + 3.5 NA Intergenic L1M6|LINE|L1 286924 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 546.5-12 chr8 140998247 140998445 + 3.5 NA intron (NM_001352737, intron 1 of 32) intron (NM_001352737, intron 1 of 32) 2658 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 418-17 chr3 29413387 29413506 + 3.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 132134 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 389.5-24 chr4 63199925 63200104 + 3.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -1038249 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 337-15 chr2 51512290 51512462 + 3.5 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 479775 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 642-13 chr5 11107876 11108127 + 3.5 NA intron (NM_001288715, intron 13 of 20) intron (NM_001288715, intron 13 of 20) -346767 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 508-8 chr15 101346094 101346322 + 3.5 NA TTS (NM_138323) TTS (NM_138323) 11771 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 587.5-9 chr15 93341923 93342242 + 3.5 NA Intergenic Intergenic 136016 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 429-6 chr10 44210873 44211102 + 3.5 NA Intergenic MER2|DNA|TcMar-Tigger -81763 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 802.5 chr10 56045639 56045980 + 3.5 NA Intergenic L1P4|LINE|L1 315450 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 699.5-7 chr3 129258225 129258622 + 3.5 NA intron (NM_016128, intron 10 of 23) MIR|SINE|MIR 8817 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 419.5-4 chr11 25076773 25076948 + 3.5 NA intron (NM_001009909, intron 10 of 11) intron (NM_001009909, intron 10 of 11) 579807 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 363-28 chr6 102611584 102611840 + 3.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 1212727 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 720.5-8 chr7 29599573 29600164 + 3.5 NA Intergenic Intergenic 34335 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 501 chr1 44689276 44689531 + 3.5 NA intron (NM_001145636, intron 1 of 11) intron (NM_001145636, intron 1 of 11) 14689 NM_001145636 339541 Hs.173679 NM_001004307 ENSG00000198520 ARMH1 C1orf228|NCRNA00082|p40 armadillo like helical domain containing 1 protein-coding 579.5-18 chr8 81810633 81810909 + 3.5 NA intron (NR_145472, intron 4 of 6) MER20|DNA|hAT-Charlie 31414 NR_145474 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 456-33 chr8 52487397 52487666 + 3.5 NA Intergenic Intergenic -77652 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 636-8 chr14 70775072 70775415 + 3.5 NA intron (NM_001284231, intron 1 of 11) MIRb|SINE|MIR 8209 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 728.5-7 chr5 127632082 127632331 + 3.5 NA Intergenic Intergenic -16815 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 468-24 chr3 89229624 89229835 + 3.5 NA intron (NM_182644, intron 3 of 6) Charlie2b|DNA|hAT-Charlie 122108 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1093.5-2 chr5 44546451 44546882 + 3.5 NA Intergenic Intergenic -36384 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 458.5-18 chr8 127397225 127397440 + 3.5 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -3067 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 636.5-6 chr5 56925294 56925617 + 3.5 NA non-coding (NR_136555, exon 5 of 5) non-coding (NR_136555, exon 5 of 5) 15393 NR_136557 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 482-7 chr14 35593648 35593877 + 3.5 NA intron (NM_014990, intron 36 of 40) AluJo|SINE|Alu 59598 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 712.5 chr1 181310473 181310709 + 3.5 NA Intergenic Intergenic 74203 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 551-17 chr2 38015924 38016102 + 3.5 NA intron (NM_144713, intron 10 of 10) intron (NM_144713, intron 10 of 10) 20328 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 536.5-7 chr11 100074641 100074928 + 3.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 518639 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 508-19 chr3 2590490 2590674 + 3.5 NA intron (NM_175607, intron 4 of 24) L2b|LINE|L2 -301633 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 682-2 chr10 30624194 30624510 + 3.5 NA intron (NM_183058, intron 3 of 4) LTR33|LTR|ERVL 5401 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 737-10 chr8 74273397 74273701 + 3.5 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 47812 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 727-7 chr22 35472781 35473162 + 3.5 NA Intergenic Intergenic -67523 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 594-9 chr2 122871165 122871400 + 3.5 NA Intergenic Intergenic 202199 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1070.5 chr3 162041606 162042138 + 3.5 NA Intergenic Intergenic 545064 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 600.5-4 chr13 112626131 112626393 + 3.5 NA Intergenic HERV16-int|LTR|ERVL -20782 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 399.5-17 chr3 122952433 122952558 + 3.5 NA intron (NM_001256348, intron 1 of 21) MIR|SINE|MIR 23639 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 633.5-4 chr12 15599463 15599764 + 3.5 NA Intergenic Intergenic 53002 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 454.5-5 chr16 22058813 22058997 + 3.5 NA intron (NM_001164579, intron 1 of 2) L2-1_AMi|LINE|L2 -33636 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 677.5 chr11 106448935 106449354 + 3.5 NA Intergenic AluSz|SINE|Alu 197737 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 862-7 chr7 12568837 12569152 + 3.5 NA Intergenic LTR48B|LTR|ERV1 -1726 NM_001112706 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 507.5-2 chr1 116424447 116424665 + 3.5 NA intron (NR_125972, intron 3 of 3) L2c|LINE|L2 -5934 NR_027646 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 872 chr1 155374823 155375314 + 3.5 NA intron (NM_018489, intron 10 of 27) AluJb|SINE|Alu -28623 NR_030282 693140 NR_030282 ENSG00000283701 MIR555 MIRN555|hsa-mir-555 microRNA 555 ncRNA 869-6 chr6 63385171 63385556 + 3.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -65380 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 518-20 chr5 107272239 107272453 + 3.5 NA Intergenic Intergenic -261332 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 616.5-15 chr5 49666996 49667364 + 3.5 NA Intergenic (CATTC)n|Satellite|Satellite 774108 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1019 chr13 57685092 57685625 + 3.5 NA intron (NM_001040429, intron 3 of 3) intron (NM_001040429, intron 3 of 3) 53614 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 571-7 chr2 14035349 14035654 + 3.5 NA Intergenic Intergenic 365457 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 664.5-7 chr20 50689342 50689577 + 3.5 NA intron (NM_001290268, intron 1 of 21) AluSx|SINE|Alu 2083 NM_001290268 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 726-5 chr3 177346145 177346596 + 3.5 NA Intergenic Intergenic 51928 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 547.5-2 chr15 52370117 52370321 + 3.5 NA exon (NM_000259, exon 22 of 41) exon (NM_000259, exon 22 of 41) -74415 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 385.5-28 chr2 233300118 233300258 + 3.5 NA Intergenic Intergenic -7628 NM_000541 6295 Hs.32721 NM_000541 ENSG00000130561 SAG RP47|S-AG S-antigen visual arrestin protein-coding 851.5-3 chr6 54805852 54806136 + 3.5 NA Intergenic Intergenic -40777 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 698.5 chr4 84527990 84528501 + 3.5 NA Intergenic Intergenic -30011 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 863-5 chr5 6442805 6443093 + 3.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -5910 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 600-17 chr3 57630274 57630518 + 3.5 NA intron (NM_152678, intron 18 of 19) intron (NM_152678, intron 18 of 19) 32607 NR_132369 106144532 Hs.667207 NR_132369 ENSG00000272146 ARF4-AS1 - ARF4 antisense RNA 1 ncRNA 695.5-5 chr3 182936879 182937200 + 3.5 NA Intergenic Intergenic 43499 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 570.5-9 chr5 147126566 147126873 + 3.5 NA Intergenic L1PA13|LINE|L1 -45199 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 313-43 chrX 72189423 72189610 + 3.5 NA intron (NM_006223, intron 2 of 3) L1MD1|LINE|L1 7759 NM_006223 5303 Hs.655623 NM_006223 ENSG00000102309 PIN4 EPVH|PAR14|PAR17 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding 399.5-27 chr8 84498393 84498664 + 3.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 83044 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 363.5-7 chr12 17636602 17636783 + 3.5 NA Intergenic Intergenic -36607 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 316-29 chr4 48641297 48641484 + 3.5 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 138909 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 342.5-4 chr10 56981373 56981607 + 3.5 NA Intergenic L1M5|LINE|L1 323069 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 226-10 chr16 19218180 19218301 + 3.5 NA intron (NM_001308157, intron 5 of 7) L2b|LINE|L2 45905 NM_001308157 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 394-27 chr8 120653171 120653437 + 3.5 NA intron (NM_021021, intron 2 of 6) MLT1C|LTR|ERVL-MaLR -107949 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 781.5-6 chr2 231214686 231215049 + 3.5 NA exon (NM_001352756, exon 4 of 21) exon (NM_001352756, exon 4 of 21) 16236 NM_001352754 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 435.5-4 chr14 45309395 45309527 + 3.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -56259 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 602.5-11 chrX 56760934 56761228 + 3.5 NA intron (NM_001348129, intron 2 of 2) intron (NM_001348129, intron 2 of 2) -23497 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 933.5-2 chr4 34958962 34959350 + 3.5 NA Intergenic Intergenic -689409 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 666.5-5 chr3 169969232 169969713 + 3.5 NA intron (NM_003262, intron 1 of 7) intron (NM_003262, intron 1 of 7) 2665 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 784 chr17 67624423 67624840 + 3.5 NA intron (NM_181671, intron 5 of 9) AluSx1|SINE|Alu -93202 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 418.5-19 chr3 99688741 99688899 + 3.5 NA intron (NM_001850, intron 2 of 4) MER20|DNA|hAT-Charlie 50226 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 570-8 chr12 66985573 66985797 + 3.5 NA Intergenic Intergenic 110599 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 890.5 chr10 18198252 18198608 + 3.5 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) 58006 NM_201596 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 462-14 chr14 25296382 25296530 + 3.5 NA Intergenic ERVL-E-int|LTR|ERVL -246159 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 712.5-7 chr3 3214893 3215372 + 3.5 NA Intergenic Intergenic -35415 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 454.5-10 chr2 125859519 125859712 + 3.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 258370 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 422.5-2 chr1 166849224 166849446 + 3.5 NA exon (NM_001314014, exon 3 of 4) exon (NM_001314014, exon 3 of 4) 9860 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 783.5-4 chr15 55838536 55838930 + 3.5 NA intron (NM_198400, intron 14 of 21) intron (NM_198400, intron 14 of 21) 78398 NM_001284339 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 398-23 chr22 45538103 45538276 + 3.5 NA intron (NM_006487, intron 8 of 14) intron (NM_006487, intron 8 of 14) 35306 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 637-4 chr2 88743953 88744177 + 3.5 NA intron (NM_144563, intron 8 of 8) L1PB1|LINE|L1 -21837 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 541-7 chr2 60918431 60918605 + 3.5 NA exon (NM_001291746, exon 7 of 10) exon (NM_001291746, exon 7 of 10) 36944 NM_002908 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 498-8 chr13 61004998 61005199 + 3.5 NA Intergenic Intergenic 194782 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 732.5-2 chr10 24600958 24601412 + 3.5 NA intron (NM_001367447, intron 12 of 24) intron (NM_001367447, intron 12 of 24) 21658 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 564-26 chr8 17399685 17399907 + 3.5 NA intron (NM_004686, intron 1 of 13) L1ME2|LINE|L1 13555 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 729-9 chr7 1799145 1799486 + 3.5 NA Intergenic L1ME3A|LINE|L1 44938 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 943 chr1 84763073 84763656 + 3.5 NA Intergenic AluJr|SINE|Alu -72896 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 333-7 chr14 82771962 82772119 + 3.5 NA Intergenic L1PA13|LINE|L1 129408 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 962.5-2 chr6 20488331 20488768 + 3.5 NA intron (NM_001243076, intron 6 of 6) intron (NM_001243076, intron 6 of 6) -45908 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 329-15 chr17 61924362 61924497 + 3.5 NA intron (NM_001351695, intron 3 of 24) intron (NM_001351695, intron 3 of 24) 3553 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 902.5-2 chr14 20582866 20583306 + 3.5 NA 3' UTR (NM_145250, exon 3 of 3) 3' UTR (NM_145250, exon 3 of 3) -5138 NR_122043 254028 Hs.652569 NR_122043 ENSG00000258573 LOC254028 - uncharacterized LOC254028 ncRNA 562.5-20 chr3 162551030 162551236 + 3.5 NA Intergenic HUERS-P1-int|LTR|ERV1 752168 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 424.5 chr1 47733787 47733997 + 3.5 NA Intergenic L1ME4b|LINE|L1 263493 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 544.5-12 chr7 3978631 3978847 + 3.5 NA intron (NM_152744, intron 13 of 44) intron (NM_152744, intron 13 of 44) -150946 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 541-21 chr8 120294734 120294892 + 3.5 NA intron (NM_021110, intron 34 of 47) intron (NM_021110, intron 34 of 47) 150337 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 755-2 chr18 3301588 3302067 + 3.5 NA Intergenic L1PB3|LINE|L1 39108 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 629-10 chr6 164755063 164755319 + 3.5 NA Intergenic MLT2A2|LTR|ERVL 66872 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 618-13 chr5 65769815 65770037 + 3.5 NA intron (NM_020726, intron 3 of 12) L2c|LINE|L2 47721 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 714-2 chr21 23170981 23171214 + 3.5 NA Intergenic Intergenic 91813 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 394-23 chr6 156164583 156164739 + 3.5 NA Intergenic Intergenic -214089 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 364-34 chr6 36661209 36661320 + 3.5 NA Intergenic Intergenic 13862 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 705.5-6 chr8 108651577 108651890 + 3.5 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 135861 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 987-2 chr17 62865371 62865888 + 3.5 NA Intergenic LTR16C|LTR|ERVL 57127 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 608.5-3 chr12 41262117 41262467 + 3.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 73972 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 332-22 chr21 14721148 14721294 + 3.5 NA Intergenic Intergenic -78114 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 822.5-3 chr15 56523866 56524120 + 3.5 NA Intergenic L1M5|LINE|L1 -58856 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 488-10 chr21 28658842 28659084 + 3.5 NA Intergenic L3|LINE|CR1 119645 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 525-10 chr2 50046708 50046872 + 3.5 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -72587 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 775.5-5 chr8 117886843 117887240 + 3.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 33872 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 740.5-11 chr8 134995264 134995619 + 3.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 145506 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 545-4 chr10 29869321 29869590 + 3.5 NA Intergenic Intergenic -132519 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 590-7 chr2 54280988 54281184 + 3.5 NA intron (NM_001320589, intron 4 of 4) MIR|SINE|MIR -24857 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 538.5-14 chr3 192344187 192344376 + 3.5 NA intron (NM_004113, intron 3 of 5) intron (NM_004113, intron 3 of 5) 64768 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 662-8 chr6 61710806 61711156 + 3.5 NA intron (NR_146872, intron 7 of 9) MER5A|DNA|hAT-Charlie 136851 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 617-3 chr3 103130002 103130191 + 3.5 NA Intergenic Intergenic 394020 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 381-13 chr2 203826581 203826694 + 3.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 -41134 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 428-5 chr11 14111837 14112021 + 3.5 NA intron (NM_006108, intron 5 of 15) intron (NM_006108, intron 5 of 15) 149206 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 388.5-12 chr3 18285088 18285210 + 3.5 NA Intergenic AmnSINE2|SINE|tRNA-Deu 140190 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 568-7 chr2 236017564 236017784 + 3.5 NA intron (NM_001037131, intron 13 of 17) intron (NM_001037131, intron 13 of 17) 150712 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 921.5-2 chr21 44274182 44274467 + 3.5 NA Intergenic AluSx|SINE|Alu -11552 NM_000383 326 Hs.129829 NM_000383 ENSG00000160224 AIRE AIRE1|APECED|APS1|APSI|PGA1 autoimmune regulator protein-coding 471.5-4 chr10 77164557 77164758 + 3.5 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 23826 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 356-16 chr16 87189131 87189311 + 3.5 NA Intergenic L1MB7|LINE|L1 -22894 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 488.5-13 chr7 52898743 52899108 + 3.5 NA Intergenic Intergenic -136708 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 648.5-3 chr2 88425187 88425529 + 3.5 NA Intergenic L1MEd|LINE|L1 27335 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 459.5-19 chr7 11185195 11185435 + 3.5 NA Intergenic MER67B|LTR|ERV1 211443 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 403-9 chr10 93132925 93133114 + 3.5 NA Intergenic Intergenic 59126 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 366.5-29 chr8 25100365 25100583 + 3.5 NA Intergenic Intergenic -84215 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 577.5-8 chr12 85395725 85395938 + 3.5 NA Intergenic L1PREC2|LINE|L1 115611 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 726.5-4 chr2 37042030 37042369 + 3.5 NA intron (NM_019024, intron 18 of 35) L1ME1|LINE|L1 42173 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 421.5-4 chr11 23806106 23806335 + 3.5 NA Intergenic Intergenic -387030 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 569.5-6 chr15 83784770 83785058 + 3.5 NA intron (NM_207517, intron 4 of 29) intron (NM_207517, intron 4 of 29) 130791 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 488.5-3 chr11 112542127 112542357 + 3.5 NA TTS (NR_120559) TTS (NR_120559) 13560 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 459.5-15 chr4 2558539 2558720 + 3.5 NA intron (NM_001366318, intron 1 of 20) AluJr|SINE|Alu 21982 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 334.5-6 chr10 68602680 68602865 + 3.5 NA intron (NM_030625, intron 3 of 11) intron (NM_030625, intron 3 of 11) 42435 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 523.5-14 chr6 138032098 138032343 + 3.5 NA Intergenic Intergenic 75199 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 622 chr1 187174535 187174734 + 3.5 NA intron (NR_126347, intron 1 of 3) L1MA8|LINE|L1 81792 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 578.5-8 chr20 49036131 49036430 + 3.5 NA 3' UTR (NM_006420, exon 39 of 39) 3' UTR (NM_006420, exon 39 of 39) 9776 NR_110625 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 604.5 chr10 33200751 33201030 + 3.5 NA intron (NM_001024629, intron 10 of 10) intron (NM_001024629, intron 10 of 10) -84083 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 710.5-2 chr11 37178447 37178727 + 3.5 NA Intergenic MER4D|LTR|ERV1 -580308 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 536.5-10 chr17 11038700 11038974 + 3.5 NA Intergenic Intergenic -200750 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 464.5-8 chr12 8889494 8889700 + 3.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -24912 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 374.5-4 chr11 56396651 56396889 + 3.5 NA Intergenic ERVL-E-int|LTR|ERVL -15827 NM_001348230 79482 NM_001348230 ENSG00000272987 OR5AL1 OR5AL1P olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding 604-16 chr5 122906912 122907229 + 3.5 NA intron (NM_014035, intron 1 of 6) MER113|DNA|hAT-Charlie 61457 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 548-19 chr8 101335350 101335567 + 3.5 NA Intergenic L1MC5|LINE|L1 -33435 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 415.5-19 chr8 66426945 66427148 + 3.5 NA intron (NR_040434, intron 1 of 2) L2c|LINE|L2 1931 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 457.5-3 chr10 81431790 81431996 + 3.5 NA Intergenic L1MC1|LINE|L1 -443301 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 543-5 chr16 30608552 30608826 + 3.5 NA intron (NR_073480, intron 2 of 2) MER5A|DNA|hAT-Charlie 1139 NR_104166 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 660-7 chr17 34261579 34261839 + 3.5 NA Intergenic L1MB2|LINE|L1 6424 NM_002982 6347 Hs.303649 NM_002982 ENSG00000108691 CCL2 GDCF-2|HC11|HSMCR30|MCAF|MCP-1|MCP1|SCYA2|SMC-CF C-C motif chemokine ligand 2 protein-coding 524.5 chr1 225555093 225555285 + 3.5 NA intron (NM_001008493, intron 2 of 14) intron (NM_001008493, intron 2 of 14) 97934 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 613.5-13 chrX 87415530 87415832 + 3.5 NA Intergenic L1PA16|LINE|L1 -102121 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 310.5-36 chr5 77641256 77641363 + 3.5 NA Intergenic Intergenic -2612 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 622.5-4 chr3 109294900 109295198 + 3.5 NA intron (NM_138815, intron 8 of 8) intron (NM_138815, intron 8 of 8) 21468 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 842.5 chr1 99358007 99358419 + 3.5 NA Intergenic Intergenic 93921 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 535-17 chr5 15011678 15011995 + 3.5 NA Intergenic Intergenic -140058 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 741 chr19 15730203 15730496 + 3.5 NA Intergenic AluSx1|SINE|Alu 2325 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 367.5-6 chr10 76313247 76313483 + 3.5 NA intron (NM_001305581, intron 5 of 6) MIRc|SINE|MIR 530604 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 571-11 chr20 16392299 16392486 + 3.5 NA intron (NM_001199866, intron 17 of 22) intron (NM_001199866, intron 17 of 22) 181056 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 635-9 chr3 184152174 184152572 + 3.5 NA Intergenic AluSc|SINE|Alu -3004 NM_004423 1857 Hs.388116 NM_004423 ENSG00000161202 DVL3 DRS3 dishevelled segment polarity protein 3 protein-coding 715-3 chr14 48601369 48601698 + 3.5 NA Intergenic MSTD|LTR|ERVL-MaLR -806519 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 791.5-2 chr21 24148754 24149083 + 3.5 NA Intergenic Intergenic 172459 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 410-19 chr22 37389402 37389582 + 3.5 NA intron (NM_052906, intron 2 of 2) intron (NM_052906, intron 2 of 2) -34653 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 651.5-3 chr2 17495786 17496287 + 3.5 NA Intergenic L2a|LINE|L2 22404 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 913.5-2 chr2 223935212 223935567 + 3.5 NA intron (NM_020830, intron 1 of 11) intron (NM_020830, intron 1 of 11) 9946 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 551-22 chr4 38868918 38869105 + 3.5 NA TTS (NR_030300) TTS (NR_030300) 979 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 732 chr11 79497175 79497580 + 3.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -56347 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 381-28 chr7 47293397 47293593 + 3.5 NA intron (NM_022748, intron 25 of 30) intron (NM_022748, intron 25 of 30) 171308 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 285-15 chr14 77097435 77097546 + 3.5 NA promoter-TSS (NM_033426) promoter-TSS (NM_033426) -768 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 477.5-4 chr10 20610592 20610769 + 3.5 NA Intergenic Intergenic 58710 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 699.5-10 chr8 124758452 124758869 + 3.5 NA Intergenic Intergenic -30153 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 487-35 chr8 91105192 91105416 + 3.5 NA intron (NM_001354470, intron 1 of 3) intron (NM_001354470, intron 1 of 3) 2685 NM_001354470 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 420.5-6 chr17 65131761 65131887 + 3.5 NA Intergenic LTR33|LTR|ERVL -5514 NM_001165933 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 618.5-6 chr4 48014109 48014386 + 3.5 NA Intergenic Intergenic -1302 NM_000087 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 359.5-22 chr2 107541371 107541563 + 3.5 NA intron (NR_146968, intron 2 of 2) MER54A|LTR|ERVL 12048 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 603 chr11 22808716 22808983 + 3.5 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 20530 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 746.5 chr1 190618831 190619287 + 3.5 NA Intergenic Intergenic -5831 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 374-36 chr7 30122252 30122465 + 3.5 NA intron (NM_001350973, intron 13 of 13) intron (NM_001350973, intron 13 of 13) -12628 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 636-9 chr14 71309092 71309397 + 3.5 NA Intergenic Intergenic -11232 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 403.5-11 chr2 51758131 51758294 + 3.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -612436 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 698-3 chr11 23896316 23896633 + 3.5 NA Intergenic MLT2B1|LTR|ERVL -477284 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 586.5-22 chrUn_KI270438v1 105846 106250 + 3.5 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 856.5 chr11 92449486 92449879 + 3.5 NA intron (NM_001008781, intron 1 of 24) MIR|SINE|MIR 97586 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 607.5-12 chr4 59319735 59320026 + 3.5 NA Intergenic Intergenic 306307 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 373.5-29 chr9 33286795 33286995 + 3.5 NA Intergenic L1M4|LINE|L1 -3621 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 505.5-19 chr7 32593220 32593399 + 3.5 NA intron (NR_036680, intron 12 of 16) AluSp|SINE|Alu 97820 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 334-27 chr6 140026382 140026521 + 3.5 NA intron (NR_121623, intron 1 of 1) L1ME1|LINE|L1 -35190 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 478.5-25 chr8 116476400 116476546 + 3.5 NA Intergenic Intergenic -151414 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 958.5 chr12 65949951 65950540 + 3.5 NA intron (NM_001300918, intron 3 of 4) L1MB8|LINE|L1 -67920 NR_158984 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 650.5-5 chr14 53062492 53062813 + 3.5 NA intron (NM_030637, intron 7 of 11) intron (NM_030637, intron 7 of 11) 90671 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 653-7 chr2 101815391 101815645 + 3.5 NA intron (NM_145686, intron 3 of 30) L1MEc|LINE|L1 117811 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 556.5-2 chr10 24020925 24021090 + 3.5 NA intron (NM_001098500, intron 2 of 18) L1M4a1|LINE|L1 -187784 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 425.5-7 chr11 57021353 57021481 + 3.5 NA Intergenic L1PA16|LINE|L1 -16117 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 718-4 chr7 109329326 109329781 + 3.5 NA Intergenic Intergenic -444966 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 339-25 chr3 152858809 152858912 + 3.5 NA Intergenic Intergenic 23729 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 642.5-3 chr12 998077 998383 + 3.5 NA intron (NR_027948, intron 1 of 19) L2|LINE|L2 7007 NM_178040 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 602-15 chr3 183254801 183255147 + 3.5 NA intron (NM_032047, intron 1 of 1) intron (NM_032047, intron 1 of 1) 1721 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 784-3 chr2 164812183 164812603 + 3.5 NA intron (NM_001278458, intron 2 of 16) L2c|LINE|L2 -28356 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 530-9 chr12 42078049 42078274 + 3.5 NA Intergenic L2c|LINE|L2 66713 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 478-2 chr10 72909603 72909871 + 3.5 NA intron (NR_130125, intron 4 of 7) AluSc8|SINE|Alu 15998 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 574.5-3 chr1 217593068 217593245 + 3.5 NA intron (NM_018040, intron 5 of 9) intron (NM_018040, intron 5 of 9) 37934 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 593-11 chr21 26979572 26979918 + 3.5 NA Intergenic Intergenic -12657 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 834.5-4 chr19 31147451 31147949 + 3.5 NA Intergenic AluJr|SINE|Alu -19810 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 432.5-21 chr9 101892992 101893198 + 3.5 NA Intergenic L2a|LINE|L2 -154515 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 597-7 chr14 72649554 72649837 + 3.5 NA intron (NM_001280542, intron 8 of 10) MIRb|SINE|MIR 132875 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 484.5-8 chr10 114125990 114126231 + 3.5 NA intron (NR_135815, intron 14 of 15) intron (NR_135815, intron 14 of 15) 48069 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 489.5 chr1 113748731 113748966 + 3.5 NA intron (NM_001323043, intron 3 of 18) intron (NM_001323043, intron 3 of 18) 10307 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 538-15 chr6 4258926 4259208 + 3.5 NA Intergenic AluSq|SINE|Alu -69038 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 384.5-26 chr8 135659037 135659175 + 3.5 NA Intergenic Intergenic 201650 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 623.5-5 chr8 92070156 92070394 + 3.5 NA intron (NM_001198632, intron 1 of 11) intron (NM_001198632, intron 1 of 11) -7641 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 451.5-25 chr9 119644688 119644858 + 3.5 NA Intergenic Intergenic -275338 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 642.5-11 chrX 148195532 148195823 + 3.5 NA Intergenic L4_B_Mam|LINE|RTE-X 214340 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 1089.5-3 chr8 86736234 86736650 + 3.5 NA intron (NM_019098, intron 2 of 17) intron (NM_019098, intron 2 of 17) 7233 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 483-21 chr4 111680087 111680363 + 3.5 NA Intergenic L2a|LINE|L2 -465229 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 402.5-16 chr2 99542201 99542336 + 3.5 NA Intergenic Intergenic -52251 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 501.5-15 chr20 23160548 23160793 + 3.5 NA Intergenic Intergenic -28034 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 508.5-5 chr14 66231505 66231806 + 3.5 NA Intergenic Intergenic -254716 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 397 chr1 194827008 194827221 + 3.5 NA Intergenic Intergenic 1261601 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 845-2 chr3 32803157 32803416 + 3.5 NA Intergenic L1MA9|LINE|L1 -14711 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 375.5-24 chr4 162587392 162587567 + 3.5 NA Intergenic Intergenic -423445 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 738-4 chr2 219614095 219614413 + 3.5 NA intron (NM_052902, intron 22 of 24) intron (NM_052902, intron 22 of 24) -13316 NM_001326559 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 476-12 chr12 133088109 133088258 + 3.5 NA intron (NM_001300777, intron 4 of 4) intron (NM_001300777, intron 4 of 4) 7980 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 399-5 chr10 43080728 43080889 + 3.5 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) 3739 NM_020975 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 503.5-16 chr7 36645649 36645854 + 3.5 NA intron (NM_001177507, intron 3 of 19) intron (NM_001177507, intron 3 of 19) -45631 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 363.5-22 chr4 53475759 53475901 + 3.5 NA intron (NM_001126328, intron 9 of 10) intron (NM_001126328, intron 9 of 10) -24247 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 771-6 chr15 26719222 26719503 + 3.5 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -2597 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 962.5-4 chr7 85267977 85268635 + 3.5 NA Intergenic L1MA4A|LINE|L1 -146375 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 745.5-10 chr8 86610672 86610956 + 3.5 NA intron (NM_019098, intron 14 of 17) intron (NM_019098, intron 14 of 17) 96379 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 579.5-8 chr20 43440556 43440816 + 3.5 NA Intergenic MER58B|DNA|hAT-Charlie -17210 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 331-2 chr1 54783624 54783750 + 3.5 NA TTS (NM_017904) TTS (NM_017904) 17636 NM_017904 55001 Hs.16230 NM_017904 ENSG00000006555 TTC22 - tetratricopeptide repeat domain 22 protein-coding 504-26 chr8 53429342 53429521 + 3.5 NA Intergenic Intergenic 94534 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 475.5-15 chr5 136694091 136694259 + 3.5 NA Intergenic MER101-int|LTR|ERV1 -328699 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 607-18 chr3 78839524 78839721 + 3.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 179837 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 557.5-14 chr6 122270877 122271126 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X -128550 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 692-2 chr10 34244515 34244912 + 3.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -472033 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 783-3 chr11 16226517 16226906 + 3.5 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 129835 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 562.5-3 chr10 64431982 64432304 + 3.5 NA Intergenic L1MC4a|LINE|L1 -393385 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 588.5-17 chr8 130825768 130826230 + 3.5 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 214910 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 520.5-3 chr1 213425411 213425593 + 3.5 NA Intergenic Intergenic 374261 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 446.5-17 chr5 11697385 11697548 + 3.5 NA intron (NM_001288717, intron 2 of 20) L2b|LINE|L2 -108400 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 535.5-12 chr3 14800065 14800322 + 3.5 NA non-coding (NR_135245, exon 3 of 3) non-coding (NR_135245, exon 3 of 3) 11221 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 633.5-10 chr8 122336473 122336747 + 3.5 NA Intergenic L1MEd|LINE|L1 232034 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 688.5 chr10 105930816 105931074 + 3.5 NA Intergenic L1PB1|LINE|L1 -110612 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 749.5-6 chr17 47304182 47304517 + 3.5 NA intron (NR_110880, intron 2 of 2) intron (NR_110880, intron 2 of 2) 19264 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 332-32 chr5 80486240 80486363 + 3.5 NA Intergenic L1MB8|LINE|L1 -1799 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 628-12 chr6 62724557 62724850 + 3.5 NA Intergenic L1MA4A|LINE|L1 -438476 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 542-23 chr8 92135135 92135366 + 3.5 NA Intergenic Intergenic -31865 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 737-3 chr1 211371466 211371773 + 3.5 NA intron (NM_001319207, intron 10 of 10) intron (NM_001319207, intron 10 of 10) -11136 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 538.5-12 chr3 63359376 63359586 + 3.5 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 81173 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 652-15 chr8 71981967 71982195 + 3.5 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 93503 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 617-9 chr7 19381216 19381401 + 3.5 NA Intergenic Intergenic -235887 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 697.5-2 chr11 82041267 82041511 + 3.5 NA intron (NR_120571, intron 5 of 7) BLACKJACK|DNA|hAT-Blackjack -150553 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 704.5-6 chr3 89779947 89780401 + 3.5 NA Intergenic Intergenic 672553 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 574-2 chr1 196727623 196728208 + 3.5 NA intron (NM_000186, intron 14 of 21) intron (NM_000186, intron 14 of 21) -46885 NM_021023 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 455.5-22 chr8 132774799 132775052 + 3.5 NA promoter-TSS (NM_016018) promoter-TSS (NM_016018) -433 NM_001362971 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 942.5 chr11 12357232 12357643 + 3.5 NA intron (NM_032867, intron 8 of 8) LTR81B|LTR|Gypsy -20134 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 486-6 chr10 70311870 70312097 + 3.5 NA intron (NM_018205, intron 3 of 3) intron (NM_018205, intron 3 of 3) -27979 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 424-4 chr13 51070218 51070366 + 3.5 NA Intergenic Intergenic -4135 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 301.5-9 chr2 44504820 44504933 + 3.5 NA intron (NM_024766, intron 3 of 10) MSTB1|LTR|ERVL-MaLR 142929 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 433.5-30 chr9 89770311 89770480 + 3.5 NA Intergenic Intergenic 130612 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 610-17 chr8 130566281 130566709 + 3.5 NA Intergenic AluSq2|SINE|Alu -122821 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 501.5-26 chr7 53755724 53755937 + 3.5 NA intron (NR_038371, intron 4 of 5) L1MCb|LINE|L1 56101 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 682.5-11 chr6 159983350 159983653 + 3.5 NA intron (NM_000876, intron 1 of 47) intron (NM_000876, intron 1 of 47) 14402 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 832.5-5 chr9 11838887 11839243 + 3.5 NA Intergenic Intergenic -854320 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 578-20 chr5 43991249 43991564 + 3.5 NA Intergenic AluSz|SINE|Alu -388176 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 535-21 chr5 170648727 170649039 + 3.5 NA intron (NR_136214, intron 4 of 5) L1MC1|LINE|L1 32587 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 605-5 chr2 29872773 29873037 + 3.5 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 48681 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 345-8 chr12 8778143 8778454 + 3.5 NA intron (NR_147950, intron 7 of 8) intron (NR_147950, intron 7 of 8) -44323 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 1004 chr15 27503901 27504312 + 3.5 NA intron (NM_033223, intron 6 of 9) L1MEc|LINE|L1 -342787 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 540-18 chr6 39086955 39087199 + 3.5 NA non-coding (NR_136563, exon 14 of 14) non-coding (NR_136563, exon 14 of 14) 12763 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 731-7 chr5 155529009 155529275 + 3.5 NA Intergenic Intergenic 515387 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 672-3 chr11 45349015 45349313 + 3.5 NA Intergenic MIRb|SINE|MIR -6207 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 558.5-14 chr6 67381682 67381863 + 3.5 NA Intergenic Intergenic -673579 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 855-3 chr2 160923394 160923709 + 3.5 NA Intergenic Intergenic -213404 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 678.5-9 chr7 78175846 78176144 + 3.5 NA intron (NM_001301128, intron 13 of 20) intron (NM_001301128, intron 13 of 20) -171247 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 718.5 chr1 88499970 88500351 + 3.5 NA Intergenic Intergenic -183984 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 501.5-18 chr3 108674102 108674528 + 3.5 NA intron (NM_014648, intron 24 of 32) intron (NM_014648, intron 24 of 32) 82968 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 716.5-6 chrX 79294081 79294387 + 3.5 NA Intergenic L1PB2|LINE|L1 73100 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 326.5-28 chr6 40965457 40965619 + 3.5 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 57742 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 723.5-2 chr3 195323997 195324433 + 3.5 NA intron (NM_012287, intron 9 of 22) L1M5|LINE|L1 -53056 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 569-5 chr12 14049641 14049809 + 3.5 NA Intergenic LTR33B|LTR|ERVL -69369 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 770-5 chr20 50752647 50753046 + 3.5 NA 3' UTR (NM_032521, exon 3 of 3) 3' UTR (NM_032521, exon 3 of 3) 21266 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 414.5-12 chr2 71061215 71061450 + 3.5 NA Intergenic L1MD2|LINE|L1 -6964 NM_001330426 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 532.5-23 chr9 104875561 104875791 + 3.5 NA intron (NM_005502, intron 5 of 49) intron (NM_005502, intron 5 of 49) 52479 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 492.5-6 chr12 101974369 101974587 + 3.5 NA Intergenic Intergenic 87513 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 386-22 chr3 32555815 32555974 + 3.5 NA intron (NM_016141, intron 2 of 12) L1ME2z|LINE|L1 14964 NM_016141 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 431-15 chr19 55186432 55186618 + 3.5 NA exon (NM_001161440, exon 13 of 18) exon (NM_001161440, exon 13 of 18) -6236 NM_003180 6861 Hs.631566 NM_003180 ENSG00000129990 SYT5 - synaptotagmin 5 protein-coding 1108 chr15 59172722 59173157 + 3.5 NA intron (NM_004998, intron 21 of 27) intron (NM_004998, intron 21 of 27) -1677 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 424.5-10 chr2 35221631 35221851 + 3.5 NA Intergenic Intergenic -249664 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 806.5-4 chr6 124718476 124718829 + 3.5 NA intron (NM_001040214, intron 4 of 6) MIRb|SINE|MIR -243893 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 389-42 chr9 84387210 84387373 + 3.5 NA Intergenic Intergenic -18564 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 693-2 chr10 98249556 98249913 + 3.5 NA intron (NM_032211, intron 14 of 14) intron (NM_032211, intron 14 of 14) 18460 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 692.5-4 chr17 61588838 61589192 + 3.5 NA Intergenic MARNA|DNA|TcMar-Mariner 2204 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 421.5-3 chr10 68062793 68062963 + 3.5 NA intron (NM_001278185, intron 3 of 23) intron (NM_001278185, intron 3 of 23) 12405 NM_022079 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 454-21 chr3 197817394 197817572 + 3.5 NA intron (NM_001365717, intron 3 of 19) MamSINE1|SINE|tRNA-RTE 26229 NM_001365718 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 812.5-3 chr18 38008333 38008720 + 3.5 NA Intergenic Intergenic 351391 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 940-2 chr2 146947709 146948115 + 3.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 360855 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 280.5-13 chr2 53963259 53963387 + 3.5 NA intron (NM_014614, intron 1 of 46) AluJr4|SINE|Alu 7670 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 682-9 chr2 52662855 52663150 + 3.5 NA Intergenic L1ME1|LINE|L1 39613 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 439.5-21 chr4 90846404 90846572 + 3.5 NA intron (NM_001145065, intron 8 of 10) L1MA4|LINE|L1 611457 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 596 chr1 46962257 46962458 + 3.5 NA intron (NM_001320289, intron 1 of 11) AluSq2|SINE|Alu 993 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 829.5 chr12 2588600 2589080 + 3.5 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 83380 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 490-15 chr2 98897932 98898179 + 3.5 NA intron (NM_207362, intron 1 of 9) Tigger19a|DNA|TcMar-Tigger 38170 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 576.5-7 chr7 35816981 35817287 + 3.5 NA intron (NM_001788, intron 1 of 12) L1MB7|LINE|L1 15915 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 514-16 chr4 173666843 173667098 + 3.5 NA Intergenic Intergenic 136512 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 496.5-14 chr5 15262969 15263181 + 3.5 NA intron (NR_109944, intron 1 of 2) BLACKJACK|DNA|hAT-Blackjack 3485 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 836-6 chr5 89539779 89540172 + 3.5 NA Intergenic L2b|LINE|L2 476745 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 539-17 chr8 131131119 131131370 + 3.5 NA Intergenic Intergenic -90335 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 814.5-8 chr8 140995675 140995931 + 3.5 NA intron (NM_001352737, intron 1 of 32) (AAAAT)n|Simple_repeat|Simple_repeat 5201 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 331-40 chr8 125697676 125697801 + 3.5 NA Intergenic AluJo|SINE|Alu 253459 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 850.5-2 chr2 58474584 58474910 + 3.5 NA Intergenic Intergenic -46006 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 284.5-22 chr19 48217466 48217604 + 3.5 NA intron (NR_147707, intron 8 of 10) L1ME4a|LINE|L1 23528 NR_033679 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 1173 chr14 62933098 62933560 + 3.5 NA intron (NM_139318, intron 7 of 10) HAL1|LINE|L1 112129 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1044.5 chr16 62623668 62624024 + 3.5 NA Intergenic Intergenic -587408 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 822.5-6 chr21 39246478 39246750 + 3.5 NA intron (NM_018963, intron 21 of 41) L1MB7|LINE|L1 -63100 NM_001261824 8624 Hs.473838 NM_003720 ENSG00000183527 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome assembly chaperone 1 protein-coding 524.5-2 chr10 121312283 121312488 + 3.5 NA Intergenic MER5A|DNA|hAT-Charlie 218929 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 506-30 chr9 31491579 31491823 + 3.5 NA Intergenic L2c|LINE|L2 -110211 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 512 chr1 110768615 110768813 + 3.5 NA Intergenic L1MB3|LINE|L1 -93774 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 663.5-3 chr18 5330674 5330882 + 3.5 NA Intergenic L1ME3A|LINE|L1 -33725 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 511.5-13 chr2 205473117 205473278 + 3.5 NA intron (NM_057177, intron 19 of 21) intron (NM_057177, intron 19 of 21) -209303 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 862.5-3 chr3 109104555 109104954 + 3.5 NA intron (NM_014429, intron 3 of 27) MARNA|DNA|TcMar-Mariner 3298 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 581.5 chr10 57987402 57987600 + 3.5 NA Intergenic Intergenic 280393 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 669-13 chr4 143151504 143151900 + 3.5 NA Intergenic L1MA2|LINE|L1 33159 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 633-10 chr5 99247394 99247759 + 3.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -286414 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 549-14 chr6 14261686 14261912 + 3.5 NA Intergenic L1MEg|LINE|L1 23655 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 901-2 chr14 103769643 103770091 + 3.5 NA intron (NM_015316, intron 4 of 16) intron (NM_015316, intron 4 of 16) 54123 NM_001198953 79038 Hs.592322 NM_024071 ENSG00000100711 ZFYVE21 HCVP7TP1|ZF21 zinc finger FYVE-type containing 21 protein-coding 682.5-3 chr12 41298618 41298954 + 3.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 110466 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 346-21 chr2 127575402 127575570 + 3.5 NA intron (NM_001080527, intron 7 of 46) intron (NM_001080527, intron 7 of 46) -4524 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 604-3 chr1 230360714 230360972 + 3.5 NA intron (NM_001258311, intron 1 of 6) intron (NM_001258311, intron 1 of 6) 65489 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 668-13 chr8 86671132 86671393 + 3.5 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 72413 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 758.5-2 chr4 65017825 65018193 + 3.5 NA Intergenic Intergenic -13509 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 844-7 chrX 95693542 95693951 + 3.5 NA Intergenic Intergenic -630520 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 500.5-13 chr4 85672705 85672923 + 3.5 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -49654 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 475-10 chr16 73465083 73465380 + 3.5 NA Intergenic Intergenic 78426 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 414-40 chr8 5919323 5919467 + 3.5 NA Intergenic L1MA10|LINE|L1 487153 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 931-3 chr3 94397853 94398357 + 3.5 NA Intergenic Intergenic 335044 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 337.5-28 chr8 8776350 8776524 + 3.5 NA Intergenic MER113|DNA|hAT-Charlie 74500 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 775.5-4 chr6 141501797 141502345 + 3.5 NA Intergenic Intergenic 586728 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 581.5-18 chr7 37475070 37475308 + 3.5 NA Intergenic Intergenic -25863 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 486.5-17 chr8 79894767 79894965 + 3.5 NA Intergenic L1MB3|LINE|L1 -23129 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 757.5-2 chr4 91116759 91117039 + 3.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 881868 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 531-4 chr12 60901791 60902081 + 3.5 NA Intergenic L1PREC2|LINE|L1 1212566 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 358-43 chr8 126096031 126096167 + 3.5 NA Intergenic LTR57-int|LTR|ERVL -144902 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 559-10 chr2 27910107 27910328 + 3.5 NA intron (NM_199193, intron 3 of 13) L2b|LINE|L2 -19103 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 388-13 chr13 112799651 112799834 + 3.5 NA intron (NM_032189, intron 2 of 28) L1MCa|LINE|L1 -45011 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 448.5-13 chr3 70728963 70729150 + 3.5 NA Intergenic Intergenic 335868 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 443-39 chr9 137296512 137296738 + 3.5 NA Intergenic Intergenic 5646 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 480-12 chr15 62433240 62433465 + 3.5 NA Intergenic Intergenic 90323 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 1019-3 chr2 170092424 170092833 + 3.5 NA Intergenic L1MB7|LINE|L1 -85519 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 776.5 chr15 95997826 95998210 + 3.5 NA Intergenic Intergenic 129823 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 472.5-15 chr5 30453977 30454207 + 3.5 NA Intergenic MLT2F|LTR|ERVL 573532 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 528-3 chr1 241473150 241473399 + 3.5 NA Intergenic L1MC2|LINE|L1 46511 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 800-8 chr3 47304764 47305202 + 3.5 NA intron (NM_025010, intron 1 of 9) AluJb|SINE|Alu 22039 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 745-8 chr2 203209237 203209700 + 3.5 NA intron (NM_001114132, intron 52 of 54) intron (NM_001114132, intron 52 of 54) -28973 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 267-17 chr18 69268651 69268799 + 3.5 NA Intergenic Intergenic -132163 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 314.5-4 chr10 60471635 60471733 + 3.5 NA intron (NM_001204403, intron 2 of 43) L1ME4b|LINE|L1 -81809 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 586.5-20 chr9 130592586 130592882 + 3.5 NA intron (NM_003934, intron 1 of 18) AluJr4|SINE|Alu 13157 NM_003934 8939 Hs.98751 NM_003934 ENSG00000107164 FUBP3 FBP3 far upstream element binding protein 3 protein-coding 671-6 chr15 67991141 67991366 + 3.5 NA Intergenic Intergenic -62926 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 407-32 chr8 82419052 82419284 + 3.5 NA Intergenic L1PB2|LINE|L1 -492936 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 407.5-13 chr20 43478926 43479098 + 3.5 NA Intergenic MER57A-int|LTR|ERV1 21116 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 342.5-3 chr1 244851377 244851518 + 3.5 NA 3' UTR (NM_004501, exon 14 of 14) 3' UTR (NM_004501, exon 14 of 14) 2770 NR_132782 106635532 NR_132782 SNORA100 - small nucleolar RNA, H/ACA box 100 snoRNA 386.5-12 chr2 164486175 164486346 + 3.5 NA Intergenic L2c|LINE|L2 82235 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 271-16 chr20 50525611 50525688 + 3.5 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 15266 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 353-26 chr3 102358702 102358825 + 3.5 NA Intergenic Intergenic -76252 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 690.5-5 chr8 73031946 73032301 + 3.5 NA exon (NM_003218, exon 7 of 9) exon (NM_003218, exon 7 of 9) 23259 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 395-6 chr14 91518666 91518796 + 3.5 NA Intergenic AluJo|SINE|Alu -8251 NM_001284280 55671 Hs.533887 NM_017936 ENSG00000100796 PPP4R3A FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1 protein phosphatase 4 regulatory subunit 3A protein-coding 512.5-8 chr4 32538232 32538507 + 3.5 NA Intergenic L2|LINE|L2 187331 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 536-19 chr6 138728740 138729016 + 3.5 NA intron (NR_161205, intron 2 of 2) intron (NR_161205, intron 2 of 2) 37210 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 735.5 chr10 55567885 55568219 + 3.5 NA intron (NM_001354404, intron 2 of 34) L1MB3|LINE|L1 -30990 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 970 chr11 76840810 76841156 + 3.5 NA Intergenic L1ME3E|LINE|L1 -19935 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 777-4 chr14 65837907 65838260 + 3.5 NA Intergenic Intergenic 366981 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 474.5-16 chr8 79467835 79468029 + 3.5 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat 135744 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 379-6 chr1 172703352 172703713 + 3.5 NA Intergenic Intergenic 44429 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 781-3 chr21 27666825 27667180 + 3.5 NA Intergenic THE1D|LTR|ERVL-MaLR -55377 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 540-24 chr7 85063463 85063742 + 3.5 NA intron (NM_152754, intron 6 of 16) intron (NM_152754, intron 6 of 16) 58329 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 585.5-8 chr9 101855524 101855725 + 3.5 NA Intergenic Intergenic -117044 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 473.5 chr1 247073901 247074171 + 3.5 NA intron (NM_033213, intron 1 of 3) intron (NM_033213, intron 1 of 3) 4775 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 564-23 chr5 135657582 135657844 + 3.5 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -3778 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 409-15 chr2 83951630 83951913 + 3.5 NA Intergenic Intergenic -338911 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 426-39 chr7 4644635 4644772 + 3.5 NA Intergenic AluSp|SINE|Alu -37592 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 427-3 chr1 102403412 102403572 + 3.5 NA Intergenic L1ME2|LINE|L1 -406258 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 423.5-32 chr9 37064556 37064773 + 3.5 NA Intergenic Intergenic -15232 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 476-6 chr10 31100161 31100305 + 3.5 NA Intergenic MER131|DNA?|DNA? -68296 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 379-41 chr8 28845381 28845523 + 3.5 NA intron (NR_026826, intron 2 of 14) intron (NR_026826, intron 2 of 14) 44463 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 666-7 chr14 56946763 56947098 + 3.5 NA Intergenic Intergenic 133772 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 727.5-2 chr14 52101687 52101980 + 3.5 NA Intergenic Intergenic -32774 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 588.5-2 chr12 23338253 23338466 + 3.5 NA Intergenic Intergenic 162723 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 522.5-17 chr8 144479692 144479905 + 3.5 NA intron (NM_032902, intron 2 of 12) intron (NM_032902, intron 2 of 12) 1447 NM_001329445 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 531.5-11 chr5 110270001 110270194 + 3.5 NA Intergenic Intergenic 243818 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 393-16 chr2 46521591 46521851 + 3.5 NA intron (NM_001371283, intron 3 of 3) AluSc8|SINE|Alu -20769 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 774-5 chr5 162612175 162612564 + 3.5 NA Intergenic Intergenic 544727 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 381-21 chr5 86620155 86620315 + 3.5 NA promoter-TSS (NR_145802) promoter-TSS (NR_145802) -271 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 387.5-13 chr2 154138898 154139026 + 3.5 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 194568 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 909.5 chr7 41819131 41819452 + 3.5 NA Intergenic L1M2|LINE|L1 -116201 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 716.5-4 chr7 105051497 105051811 + 3.5 NA intron (NM_182931, intron 3 of 26) AluSx|SINE|Alu 37449 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 413.5-18 chr5 132219935 132220090 + 3.5 NA intron (NM_001365681, intron 1 of 13) intron (NM_001365681, intron 1 of 13) -2094 NR_106888 102465498 NR_106888 ENSG00000283678 MIR6830 hsa-mir-6830 microRNA 6830 ncRNA 429.5-24 chr9 79284765 79284967 + 3.5 NA Intergenic Intergenic -139200 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 680.5 chr11 19515531 19515869 + 3.5 NA intron (NR_033989, intron 3 of 3) intron (NR_033989, intron 3 of 3) 8378 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 636.5-3 chr14 43386129 43386391 + 3.5 NA Intergenic L1MC1|LINE|L1 1121023 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1580 chr3 106230106 106230906 + 3.5 NA Intergenic HAL1|LINE|L1 -361105 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 831-5 chr7 43742605 43742874 + 3.5 NA Intergenic L1MC|LINE|L1 -13198 NM_018224 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 611.5-4 chr2 126597676 126598039 + 3.5 NA Intergenic L1MD1|LINE|L1 -58078 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 411-19 chr2 76422451 76422674 + 3.5 NA Intergenic Intergenic -563403 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1177.5-2 chr4 35498779 35499394 + 3.5 NA Intergenic Intergenic 744853 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 586-13 chr4 135683464 135683728 + 3.5 NA Intergenic Intergenic 204497 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 786-2 chr10 68190574 68190888 + 3.5 NA intron (NR_045663, intron 11 of 17) L1MA4|LINE|L1 41382 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 414.5-7 chr12 123645825 123646050 + 3.5 NA intron (NM_001271868, intron 3 of 11) MamRep137|DNA|TcMar-Tigger 12108 NM_001271866 2967 Hs.355348 NM_001516 ENSG00000111358 GTF2H3 BTF2|P34|TFB4|TFIIH general transcription factor IIH subunit 3 protein-coding 527.5-12 chr8 56585679 56585871 + 3.5 NA Intergenic Intergenic -25952 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 308-20 chr2 178332427 178332563 + 3.5 NA intron (NM_001201480, intron 6 of 25) intron (NM_001201480, intron 6 of 25) 12253 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 534-3 chr10 72218216 72218490 + 3.5 NA intron (NM_001366791, intron 1 of 3) MIRc|SINE|MIR -1219 NR_045564 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 483-22 chr5 75874120 75874536 + 3.5 NA Intergenic L1PA14|LINE|L1 -156891 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 466-23 chr4 66739679 66739839 + 3.5 NA Intergenic Intergenic 462935 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 356-26 chr20 9028852 9028969 + 3.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger -40144 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 627-2 chr1 151495386 151495911 + 3.5 NA Intergenic Intergenic -15739 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 941 chr8 36580851 36581254 + 3.5 NA Intergenic MER5A1|DNA|hAT-Charlie -203322 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 689-11 chr3 52984211 52984564 + 3.5 NA intron (NM_016329, intron 1 of 20) intron (NM_016329, intron 1 of 20) 61686 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 862-6 chr3 107452715 107453145 + 3.5 NA intron (NR_110039, intron 1 of 2) intron (NR_110039, intron 1 of 2) 22000 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 912.5-2 chr18 44120489 44120863 + 3.5 NA Intergenic Intergenic 411021 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 490.5-12 chr21 29627983 29628182 + 3.5 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 32042 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 673-2 chr17 34393721 34394006 + 3.5 NA Intergenic L2b|LINE|L2 -30630 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 408.5-5 chr12 12398281 12398529 + 3.5 NA intron (NM_001300742, intron 2 of 3).2 intron (NM_001300742, intron 2 of 3).2 41327 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 488.5-16 chr8 138324211 138324381 + 3.5 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 172965 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 531-12 chr17 43570971 43571146 + 3.5 NA Intergenic AluSq2|SINE|Alu -24718 NM_001261437 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 828.5-3 chr14 74437712 74438260 + 3.5 NA Intergenic Intergenic -11776 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 396.5-33 chr9 131670866 131671001 + 3.5 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) 38909 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 1064-3 chr4 109746157 109746549 + 3.5 NA exon (NM_001318057, exon 12 of 14) exon (NM_001318057, exon 12 of 14) -16283 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 490.5-5 chr12 97341595 97341759 + 3.5 NA Intergenic Intergenic -121099 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 440-37 chr8 114781835 114781985 + 3.5 NA Intergenic Intergenic 886103 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 546.5-10 chr7 86432532 86432788 + 3.5 NA Intergenic Intergenic -211249 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 491.5-2 chr1 109059151 109059327 + 3.5 NA Intergenic AluJr|SINE|Alu 16764 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 595-11 chr3 135673200 135673622 + 3.5 NA Intergenic Intergenic -292317 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 417-30 chr4 45189248 45189397 + 3.5 NA Intergenic Intergenic -462688 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 738.5-6 chr7 86745779 86746276 + 3.5 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 102113 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 624.5-2 chr1 180168007 180168205 + 3.5 NA intron (NM_002826, intron 2 of 11) intron (NM_002826, intron 2 of 11) 13237 NM_002826 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 414.5-9 chr16 51970842 51971003 + 3.5 NA Intergenic Intergenic 103013 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 361.5-15 chr2 88098317 88098465 + 3.5 NA intron (NM_001330364, intron 5 of 8) intron (NM_001330364, intron 5 of 8) -15792 NR_039940 100616447 NR_039940 ENSG00000265003 MIR4780 - microRNA 4780 ncRNA 410.5-6 chr17 52542012 52542193 + 3.5 NA Intergenic Intergenic 151580 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 545-24 chr8 101114746 101115030 + 3.5 NA Intergenic L2|LINE|L2 62834 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 755-4 chr2 100414681 100415060 + 3.5 NA intron (NM_004854, intron 2 of 6) MIR|SINE|MIR 2798 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 511-17 chr5 23673471 23673719 + 3.5 NA Intergenic Intergenic 165940 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 571-17 chr5 77198982 77199175 + 3.5 NA intron (NM_001349752, intron 1 of 21) intron (NM_001349752, intron 1 of 21) -10815 NM_001349753 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 777.5-2 chr3 89271178 89271531 + 3.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 163733 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 474.5-18 chr8 119536947 119537169 + 3.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 55950 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 808-6 chr2 64276459 64276873 + 3.5 NA Intergenic Intergenic 48265 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 652.5-3 chr2 69048180 69048447 + 3.5 NA intron (NM_032208, intron 3 of 17) L1M5|LINE|L1 35169 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 675.5-9 chr3 178776990 178777316 + 3.5 NA intron (NR_126560, intron 2 of 7) L3|LINE|CR1 83252 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 478-24 chr5 323346 323597 + 3.5 NA intron (NM_020731, intron 1 of 11) intron (NM_020731, intron 1 of 11) 19295 NM_020731 57491 Hs.50823 NM_020731 ENSG00000286169 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 794-5 chr5 24709986 24710259 + 3.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -65144 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 483.5-10 chr3 8401448 8401704 + 3.5 NA intron (NR_033378, intron 3 of 3) HAL1|LINE|L1 100082 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 541.5-11 chr2 51264023 51264244 + 3.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 231532 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 295-47 chrX 53273404 53273537 + 3.5 NA intron (NM_001243197, intron 2 of 2) L2b|LINE|L2 8114 NM_015075 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 400-7 chr11 63845864 63846087 + 3.5 NA intron (NM_001163296, intron 1 of 16) AluSz|SINE|Alu 6865 NM_001163296 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 477-18 chr4 71682639 71682793 + 3.5 NA Intergenic L1MEc|LINE|L1 101363 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 418.5-22 chr4 140442982 140443135 + 3.5 NA 3' UTR (NM_001277353, exon 11 of 11) 3' UTR (NM_001277353, exon 11 of 11) -15397 NM_001130675 1047 Hs.86368 NM_004362 ENSG00000153132 CLGN - calmegin protein-coding 659-5 chr2 48000407 48000680 + 3.5 NA Intergenic L1M5|LINE|L1 -94750 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 353.5-2 chr1 159563457 159563612 + 3.5 NA Intergenic Intergenic -24292 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 453.5-2 chr10 8445012 8445190 + 3.5 NA Intergenic Intergenic 149290 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 507-29 chr5 114437739 114437890 + 3.5 NA intron (NM_170775, intron 1 of 5) intron (NM_170775, intron 1 of 5) 4303 NR_103458 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 445-33 chr8 65017273 65017622 + 3.5 NA Intergenic Intergenic 162893 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 697-9 chr8 116565331 116565673 + 3.5 NA Intergenic Intergenic -86598 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 463-26 chr7 126354442 126354593 + 3.5 NA Intergenic L1ME3C|LINE|L1 703667 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 493-20 chr4 30923781 30924087 + 3.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 203565 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 487.5-22 chr3 116527755 116527991 + 3.5 NA Intergenic Intergenic -24600 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 476-32 chr8 107383401 107383655 + 3.5 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -47013 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 639.5-5 chr3 51911591 51911993 + 3.5 NA Intergenic L1ME2|LINE|L1 -8439 NM_152397 132141 Hs.671210 NM_152397 ENSG00000173389 IQCF1 - IQ motif containing F1 protein-coding 717.5-5 chr4 36103820 36104404 + 3.5 NA intron (NR_146894, intron 27 of 32) intron (NR_146894, intron 27 of 32) 139827 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 724-3 chr14 45579442 45579695 + 3.5 NA Intergenic L1MA3|LINE|L1 136034 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 526-8 chr20 52145909 52146098 + 3.5 NA intron (NM_199427, intron 5 of 8) Tigger3b|DNA|TcMar-Tigger -40519 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 666-5 chr11 94134134 94134373 + 3.5 NA intron (NM_015368, intron 1 of 4) intron (NM_015368, intron 1 of 4) 5412 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 602.5-8 chr5 52231073 52231325 + 3.5 NA Intergenic Intergenic 223168 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 468-35 chr5 84226162 84226389 + 3.5 NA intron (NM_001278642, intron 2 of 9) intron (NM_001278642, intron 2 of 9) 158592 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 829-2 chr13 100822721 100822957 + 3.5 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 114514 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 679.5-12 chr9 32399549 32399820 + 3.5 NA intron (NM_001278352, intron 2 of 21) L1ME3G|LINE|L1 15041 NM_002197 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 465-18 chr12 33897706 33898047 + 3.5 NA Intergenic L1PA7|LINE|L1 -124620 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 698.5-4 chr8 137746036 137746286 + 3.5 NA Intergenic L1MA3|LINE|L1 -332573 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 544-23 chrX 9647676 9647954 + 3.5 NA intron (NM_001139467, intron 3 of 16) intron (NM_001139467, intron 3 of 16) 118032 NM_000273 4935 Hs.74124 NM_000273 ENSG00000101850 GPR143 NYS6|OA1 G protein-coupled receptor 143 protein-coding 340-35 chr7 55184560 55184723 + 3.5 NA intron (NR_047551, intron 1 of 1) intron (NR_047551, intron 1 of 1) 4308 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 442.5-21 chr7 17365154 17365390 + 3.5 NA Intergenic Intergenic -9645 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 671-2 chr11 62174583 62175087 + 3.5 NA Intergenic Intergenic -15381 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 466-22 chr3 196621411 196621609 + 3.5 NA Intergenic LTR33|LTR|ERVL 11077 NR_132101 101929769 Hs.518527 NR_132101 ENSG00000232065 LINC01063 - long intergenic non-protein coding RNA 1063 ncRNA 397.5-36 chrX 84078128 84078296 + 3.5 NA intron (NM_014496, intron 20 of 21) L1ME1|LINE|L1 109723 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 536.5-14 chr5 24407512 24407750 + 3.5 NA Intergenic Intergenic 237347 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 524.5-11 chr4 63341016 63341192 + 3.5 NA Intergenic ALR/Alpha|Satellite|centr 1068346 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 603.5-8 chr3 114166339 114166605 + 3.5 NA intron (NM_000796, intron 2 of 6) MSTD|LTR|ERVL-MaLR 12304 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 594-5 chr13 81246659 81246965 + 3.5 NA Intergenic MLT2F|LTR|ERVL -19829 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 604.5-6 chr19 8255031 8255339 + 3.5 NA intron (NM_024552, intron 4 of 11) intron (NM_024552, intron 4 of 11) 45815 NM_024552 79603 Hs.515111 NM_024552 ENSG00000090661 CERS4 LASS4|Trh1 ceramide synthase 4 protein-coding 607-2 chr1 31382158 31382573 + 3.5 NA Intergenic L2b|LINE|L2 -9077 NM_001320996 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 736-11 chr5 169706697 169707206 + 3.5 NA intron (NR_156756, intron 14 of 52) intron (NR_156756, intron 14 of 52) 69676 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 374.5-21 chr4 62792980 62793158 + 3.5 NA Intergenic Intergenic -631304 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 757-2 chr12 44160506 44160961 + 3.5 NA intron (NM_001286213, intron 3 of 6) AluJr|SINE|Alu 324652 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 489.5-6 chr11 83021529 83021801 + 3.5 NA intron (NM_001286060, intron 1 of 4) MER52A|LTR|ERV1 12609 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 681.5-7 chr5 104167159 104167427 + 3.5 NA Intergenic Intergenic -604504 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 792.5-2 chr3 69072101 69072400 + 3.5 NA intron (NM_001363861, intron 2 of 15) intron (NM_001363861, intron 2 of 15) 8115 NM_198195 9039 Hs.154320 NM_003968 ENSG00000144744 UBA3 NAE2|UBE1C|hUBA3 ubiquitin like modifier activating enzyme 3 protein-coding 609.5-2 chr13 32340729 32340949 + 3.5 NA exon (NM_000059, exon 11 of 27) exon (NM_000059, exon 11 of 27) 25359 NM_000059 675 Hs.34012 NM_000059 ENSG00000139618 BRCA2 BRCC2|BROVCA2|FACD|FAD|FAD1|FANCD|FANCD1|GLM3|PNCA2|XRCC11 BRCA2 DNA repair associated protein-coding 692.5-5 chr4 8680539 8680884 + 3.5 NA Intergenic Intergenic 87946 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 516.5-3 chr10 117970337 117970553 + 3.5 NA Intergenic Intergenic -76376 NR_026940 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 569.5 chr1 197177930 197178196 + 3.5 NA intron (NM_194314, intron 6 of 9) intron (NM_194314, intron 6 of 9) 22479 NM_194314 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 579.5-4 chr15 70669801 70669977 + 3.5 NA intron (NM_018003, intron 15 of 18) intron (NM_018003, intron 15 of 18) 32393 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 579-11 chr2 118016580 118016877 + 3.5 NA Intergenic Intergenic -2658 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 1369 chr5 146742464 146743207 + 3.5 NA intron (NM_001271899, intron 2 of 9) MLT1C|LTR|ERVL-MaLR 135950 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 399-38 chr8 115504805 115505074 + 3.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 163074 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 307-2 chr1 154527590 154527703 + 3.5 NA intron (NM_182499, intron 6 of 12) L1M5|LINE|L1 -25234 NM_001010846 126669 Hs.591481 NM_001010846 ENSG00000169291 SHE - Src homology 2 domain containing E protein-coding 625-6 chr17 30184368 30184557 + 3.5 NA intron (NM_032141, intron 6 of 6) intron (NM_032141, intron 6 of 6) 51235 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 740-7 chr5 25340119 25340358 + 3.5 NA Intergenic Intergenic 149285 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 746.5-2 chr13 84672094 84672342 + 3.5 NA Intergenic Intergenic -111436 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 866-3 chr17 28825631 28826033 + 3.5 NA intron (NM_001288635, intron 1 of 3) AluSx1|SINE|Alu -13361 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 315-19 chr20 10971212 10971355 + 3.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -55261 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 732-11 chr3 44001347 44001733 + 3.5 NA Intergenic Intergenic -112672 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 410 chr1 116083116 116083353 + 3.5 NA Intergenic L1MB2|LINE|L1 -28521 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 980.5 chr5 55340868 55341496 + 3.5 NA intron (NM_015360, intron 6 of 26) intron (NM_015360, intron 6 of 26) 33193 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 684-7 chr3 4650154 4650508 + 3.5 NA intron (NM_001168272, intron 10 of 60) L1MB7|LINE|L1 101259 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 483-16 chr2 96938235 96938602 + 3.5 NA intron (NM_001122646, intron 8 of 16) intron (NM_001122646, intron 8 of 16) 19312 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 677.5-5 chr8 13150932 13151166 + 3.5 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -17760 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 561-23 chr6 127330849 127331146 + 3.5 NA exon (NM_001139510, exon 2 of 6) exon (NM_001139510, exon 2 of 6) 11410 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 435-12 chr2 19555698 19555826 + 3.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -197139 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 609-18 chr6 45058764 45059017 + 3.5 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 138880 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 791-3 chr20 22947740 22948095 + 3.5 NA Intergenic MLT2B3|LTR|ERVL -87503 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 356-40 chr9 114678278 114678501 + 3.5 NA intron (NR_144867, intron 1 of 4) intron (NR_144867, intron 1 of 4) 3700 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 558-20 chr8 124044318 124044662 + 3.5 NA intron (NM_001039112, intron 20 of 40) intron (NM_001039112, intron 20 of 40) -3708 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 499.5-2 chr10 123407269 123407507 + 3.5 NA Intergenic L1MB7|LINE|L1 252986 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 728.5-4 chr17 4644583 4644847 + 3.5 NA Intergenic Intergenic -3037 NM_001140 246 Hs.73809 NM_001140 ENSG00000161905 ALOX15 12-LOX|15-LOX|15-LOX-1|LOG15 arachidonate 15-lipoxygenase protein-coding 343.5-16 chr2 52048606 52048781 + 3.5 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -321955 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 592-16 chr8 121754125 121754378 + 3.5 NA Intergenic Intergenic -112811 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 511 chr1 115200559 115200799 + 3.5 NA Intergenic L1PB3|LINE|L1 -82355 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 535.5-3 chr12 11431082 11431311 + 3.5 NA intron (NR_148969, intron 4 of 4) intron (NR_148969, intron 4 of 4) -35629 NM_006248 653247 Hs.654486 NM_006248 ENSG00000121335 PRB2 IB-9|PRPPRB1|Ps|cP7 proline rich protein BstNI subfamily 2 protein-coding 550 chr1 38500623 38500901 + 3.5 NA Intergenic L2a|LINE|L2 25566 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 344.5-9 chr14 60737252 60737444 + 3.5 NA intron (NM_001177963, intron 1 of 6) L1ME4b|LINE|L1 2587 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 614.5-8 chr3 167119877 167120227 + 3.5 NA Intergenic MIR|SINE|MIR 221369 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 609-3 chr15 79264191 79264496 + 3.5 NA intron (NR_038997, intron 1 of 1) L2a|LINE|L2 -18379 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 723-12 chr8 136609176 136609581 + 3.5 NA intron (NR_147196, intron 2 of 5) L1M5|LINE|L1 78580 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 679-6 chr14 86030938 86031308 + 3.5 NA intron (NR_110155, intron 1 of 3) L1ME3A|LINE|L1 96445 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 499.5-24 chr7 120145204 120145534 + 3.5 NA Intergenic Intergenic -127806 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 534-28 chr5 159647567 159647974 + 3.5 NA Intergenic AluSc|SINE|Alu -181494 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 653.5 chr10 15588069 15588349 + 3.5 NA intron (NM_001291494, intron 21 of 28) intron (NM_001291494, intron 21 of 28) 131713 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 808-4 chr13 111314175 111314602 + 3.5 NA Intergenic Intergenic -1797 NM_001303133 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 591-15 chr9 100377729 100378260 + 3.5 NA Intergenic L1ME4a|LINE|L1 -25052 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 475-7 chr14 72975681 72975834 + 3.5 NA intron (NM_178441, intron 5 of 8) intron (NM_178441, intron 5 of 8) 11199 NM_001281735 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 727.5-6 chr4 83307294 83307549 + 3.5 NA intron (NM_001098540, intron 8 of 11) (GCA)n|Simple_repeat|Simple_repeat -22287 NM_015697 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 642.5-10 chr7 30193640 30193942 + 3.5 NA Intergenic L1MEd|LINE|L1 58805 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 751.5-4 chr4 126239007 126239319 + 3.5 NA Intergenic L1MC1|LINE|L1 731904 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 787-2 chr2 185075090 185075375 + 3.5 NA Intergenic Intergenic 91840 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 522.5-10 chr3 1691728 1692021 + 3.5 NA Intergenic L1M2|LINE|L1 -406929 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 843-6 chr7 8406495 8406824 + 3.5 NA Intergenic L1MD3|LINE|L1 -26950 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 426.5-4 chr10 33136617 33136830 + 3.5 NA Intergenic Intergenic -19916 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 543.5-14 chr4 112121727 112121921 + 3.5 NA Intergenic L3|LINE|CR1 -23630 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 427.5-19 chr4 138200465 138200672 + 3.5 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 41781 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 417.5-27 chr9 30511354 30511484 + 3.5 NA Intergenic Intergenic -102965 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 626-7 chr18 57343216 57343496 + 3.5 NA Intergenic Intergenic -9201 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 331.5-26 chr8 70153666 70153784 + 3.5 NA intron (NM_001321711, intron 11 of 21) intron (NM_001321711, intron 11 of 21) -82473 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 456.5-21 chr6 47841034 47841273 + 3.5 NA Intergenic Intergenic 54085 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 422-21 chr4 31741224 31741437 + 3.5 NA Intergenic Intergenic 234786 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 548.5-8 chr2 21787589 21787764 + 3.5 NA Intergenic Intergenic -77024 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 610.5-8 chr2 56584321 56584558 + 3.5 NA Intergenic Intergenic -398669 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 943.5 chr15 70998980 70999331 + 3.5 NA intron (NM_017691, intron 11 of 15) L1M4|LINE|L1 106712 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 771 chr10 116755824 116756165 + 3.5 NA intron (NM_001330164, intron 2 of 12) AluJb|SINE|Alu -13428 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 647.5-2 chr11 76583754 76584022 + 3.5 NA Intergenic L1M5|LINE|L1 86050 NM_001370188 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 863.5-4 chr8 70037595 70038015 + 3.5 NA Intergenic L2b|LINE|L2 33447 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 439.5-9 chr11 82165929 82166165 + 3.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 237866 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 921 chr10 53413579 53414002 + 3.5 NA Intergenic Intergenic -642090 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 508.5-15 chr4 32201041 32201529 + 3.5 NA Intergenic L1MB8|LINE|L1 -149753 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 402-29 chr6 20055989 20056132 + 3.5 NA Intergenic Intergenic 156409 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 493.5-14 chr4 36996539 36996701 + 3.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -5159 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 974 chr12 7203544 7203995 + 3.5 NA intron (NM_001351136, intron 10 of 15) intron (NM_001351136, intron 10 of 15) 13407 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 627.5-8 chr5 128068587 128069106 + 3.5 NA intron (NR_152810, intron 1 of 3) intron (NR_152810, intron 1 of 3) 14329 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 513-12 chr17 66325990 66326197 + 3.5 NA intron (NM_002737, intron 2 of 16) MIRb|SINE|MIR 23480 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 426.5-17 chr2 222939136 222939544 + 3.5 NA intron (NM_004457, intron 16 of 16) intron (NM_004457, intron 16 of 16) 78304 NM_001354158 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 388.5-4 chr17 60695447 60695610 + 3.5 NA intron (NM_001330413, intron 4 of 25) L1MB2|LINE|L1 17677 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 914.5-2 chr8 99751413 99751959 + 3.5 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 142021 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 948-3 chr7 100883110 100883546 + 3.5 NA intron (NM_015908, intron 5 of 19) intron (NM_015908, intron 5 of 19) 6387 NM_001015072 402682 Hs.534845 NM_001015072 ENSG00000176125 UFSP1 UFSP UFM1 specific peptidase 1 (inactive) protein-coding 666.5-7 chr8 124726102 124726495 + 3.5 NA intron (NM_001282971, intron 1 of 14) intron (NM_001282971, intron 1 of 14) 2175 NM_001363297 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 413.5-19 chr6 74870779 74871101 + 3.5 NA Intergenic Intergenic 257842 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 528-7 chr12 14621077 14621242 + 3.5 NA exon (NM_004963, exon 23 of 27) exon (NM_004963, exon 23 of 27) -53276 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 527-7 chr11 44732981 44733241 + 3.5 NA intron (NM_130783, intron 1 of 9) MLT1J1|LTR|ERVL-MaLR 6149 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 541-9 chr2 118459248 118459489 + 3.5 NA Intergenic MIRb|SINE|MIR 143598 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 586.5-4 chr11 85820631 85820870 + 3.5 NA Intergenic Intergenic -9591 NM_032943 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 750.5 chr10 67574837 67575268 + 3.5 NA intron (NM_001127384, intron 3 of 17) HAL1ME|LINE|L1 90608 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 887.5-3 chr7 33458001 33458598 + 3.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 328735 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 1017 chr11 83100778 83101297 + 3.5 NA Intergenic Intergenic 28971 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 532-2 chr12 32632957 32633164 + 3.5 NA intron (NM_001370297, intron 12 of 14) L2c|LINE|L2 -46140 NM_012063 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 462.5-12 chr2 239713232 239713526 + 3.5 NA Intergenic L1ME4a|LINE|L1 -49481 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 364-26 chr5 2430661 2430833 + 3.5 NA Intergenic Intergenic -118546 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 586.5-8 chr15 100520267 100520572 + 3.5 NA intron (NM_001290341, intron 3 of 13) intron (NM_001290341, intron 3 of 13) 23867 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 586.5-2 chr1 175825134 175825325 + 3.5 NA Intergenic MamTip2|DNA|hAT-Tip100 -52114 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 553.5 chr1 241044255 241044513 + 3.5 NA intron (NM_001350116, intron 3 of 16) AluSz|SINE|Alu -87888 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 290.5-25 chr6 9933036 9933187 + 3.5 NA Intergenic Intergenic -471391 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 627.5 chr1 182178475 182178756 + 3.5 NA Intergenic AluJo|SINE|Alu -116903 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 742.5-4 chr2 152352295 152352574 + 3.5 NA intron (NM_052905, intron 1 of 25) MIRb|SINE|MIR 17260 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 495.5-9 chr2 46176731 46177025 + 3.5 NA intron (NM_005400, intron 14 of 14) L3|LINE|CR1 -120529 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 501-16 chr4 186380876 186381212 + 3.5 NA intron (NR_033900, intron 1 of 3) intron (NR_033900, intron 1 of 3) 114855 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 719.5 chr10 4402814 4403072 + 3.5 NA intron (NR_108054, intron 2 of 2) L1ME2|LINE|L1 -3526 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 593-18 chr8 65116472 65116708 + 3.5 NA Intergenic Intergenic 63750 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 687.5-10 chr8 127543186 127543461 + 3.5 NA Intergenic Intergenic -61184 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 892.5-4 chr2 146966184 146966542 + 3.5 NA Intergenic L2c|LINE|L2 379306 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 715.5-5 chr3 10190312 10190688 + 3.5 NA intron (NM_001570, intron 2 of 12) intron (NM_001570, intron 2 of 12) 25581 NM_001570 3656 Hs.449207 NM_001570 ENSG00000134070 IRAK2 IRAK-2 interleukin 1 receptor associated kinase 2 protein-coding 325.5-7 chr11 108387372 108387511 + 3.5 NA intron (NM_001330368, intron 5 of 6) intron (NM_001330368, intron 5 of 6) 80088 NM_152587 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 296-4 chr10 88622676 88622836 + 3.5 NA Intergenic L2a|LINE|L2 35994 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 596-5 chr15 78602919 78603165 + 3.5 NA intron (NR_046313, intron 4 of 7) AluSz6|SINE|Alu 17954 NM_001166694 1136 Hs.89605 NM_000743 ENSG00000080644 CHRNA3 LNCR2|NACHRA3|PAOD2 cholinergic receptor nicotinic alpha 3 subunit protein-coding 229-6 chr10 111887944 111888100 + 3.5 NA Intergenic MIRb|SINE|MIR 295743 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 573.5-4 chr2 34822733 34823009 + 3.5 NA Intergenic Intergenic 145314 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 674-4 chr2 198046297 198046534 + 3.5 NA intron (NM_006226, intron 1 of 5) L1P1|LINE|L1 241822 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 539-7 chr16 67519386 67519644 + 3.5 NA intron (NR_104656, intron 1 of 1) intron (NR_104656, intron 1 of 1) 9230 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 554-23 chr6 164752332 164752589 + 3.5 NA Intergenic Intergenic 69603 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 452-31 chr9 130115165 130115309 + 3.5 NA intron (NM_001136557, intron 16 of 19) intron (NM_001136557, intron 16 of 19) 28982 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 487.5-15 chr2 133063791 133063986 + 3.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 148331 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 457.5-18 chr20 57095094 57095279 + 3.5 NA Intergenic MLT2C1|LTR|ERVL -118510 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 513.5-17 chr5 88731509 88731863 + 3.5 NA intron (NM_001364332, intron 6 of 9) intron (NM_001364332, intron 6 of 9) -40645 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 441-4 chr1 196315025 196315282 + 3.5 NA intron (NM_001287820, intron 19 of 26) intron (NM_001287820, intron 19 of 26) -226438 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 513.5-4 chr11 98522183 98522422 + 3.5 NA Intergenic A-rich|Low_complexity|Low_complexity -498647 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 767.5-7 chr8 85152408 85152757 + 3.5 NA Intergenic LTR12C|LTR|ERV1 24459 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 461.5-5 chr12 112140460 112140602 + 3.5 NA intron (NM_006700, intron 4 of 11) intron (NM_006700, intron 4 of 11) 14971 NM_006700 10906 Hs.5148 NM_006700 ENSG00000135148 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 749.5 chr1 213694615 213695131 + 3.5 NA Intergenic L2c|LINE|L2 -229876 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 752.5-2 chr4 78754055 78754365 + 3.5 NA Intergenic Intergenic -22140 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 766-2 chr10 73052882 73053134 + 3.5 NA intron (NM_001017962, intron 6 of 14) intron (NM_001017962, intron 6 of 14) 43966 NM_001142596 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 433.5-11 chr17 60676523 60676771 + 3.5 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat -1204 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 468.5-15 chr8 136666426 136666631 + 3.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 135730 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 487-28 chr3 178206165 178206338 + 3.5 NA Intergenic LTR80A|LTR|ERVL -212950 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 318-27 chr3 123577853 123577976 + 3.5 NA intron (NM_001329784, intron 2 of 8) L1MB7|LINE|L1 6703 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 783-7 chr4 40344058 40344366 + 3.5 NA intron (NM_017581, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 8879 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 522.5-13 chr3 181269242 181269765 + 3.5 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 37766 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 1015.5 chr17 10031713 10032457 + 3.5 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 4572 NM_201432 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 524-16 chr3 113778247 113778469 + 3.5 NA intron (NM_001690, intron 1 of 14) AluSz6|SINE|Alu 31323 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 468-46 chr9 104209401 104209557 + 3.5 NA Intergenic Intergenic -60750 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 513.5-10 chr2 173714691 173714931 + 3.5 NA Intergenic Intergenic 249069 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 546-8 chr19 33898039 33898347 + 3.5 NA Intergenic L1MEg|LINE|L1 101323 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 205.5-9 chr18 30812627 30812720 + 3.5 NA Intergenic Intergenic 230069 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 416-28 chr8 126918876 126919017 + 3.5 NA Intergenic L1ME1|LINE|L1 -94208 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 629.5-5 chr21 33914815 33915149 + 3.5 NA intron (NM_001697, intron 1 of 6) intron (NM_001697, intron 1 of 6) 822 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 255-23 chr4 64830556 64830628 + 3.5 NA Intergenic Intergenic 173908 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 806.5-3 chr3 161806809 161807218 + 3.5 NA Intergenic Intergenic 310205 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 509-4 chr11 70432889 70433186 + 3.5 NA intron (NM_005231, intron 15 of 17) intron (NM_005231, intron 15 of 17) 34508 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 319-27 chr3 88699721 88699837 + 3.5 NA Intergenic L1MEc|LINE|L1 361323 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 668.5 chr10 12582983 12583308 + 3.5 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) 4392 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 437-37 chr7 107933686 107933933 + 3.5 NA intron (NM_002291, intron 27 of 33) intron (NM_002291, intron 27 of 33) 42626 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 684-5 chr2 101107628 101107887 + 3.5 NA intron (NM_001102426, intron 1 of 19) L1MC3|LINE|L1 43690 NM_001330348 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 484.5-21 chr6 136816715 136816962 + 3.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -5754 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 729.5-5 chr9 13812908 13813338 + 3.5 NA Intergenic Intergenic -114848 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 431-3 chr1 228740985 228741155 + 3.5 NA intron (NM_021205, intron 2 of 2) intron (NM_021205, intron 2 of 2) 5591 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 326.5-18 chr19 57238535 57238684 + 3.5 NA Intergenic LTR54B|LTR|ERV1 -2023 NM_001023563 390980 Hs.22488 NM_001023563 ENSG00000204524 ZNF805 - zinc finger protein 805 protein-coding 701 chr1 209593391 209593833 + 3.5 NA intron (NM_020439, intron 1 of 12) L2a|LINE|L2 9898 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 737.5 chr1 85223809 85224218 + 3.5 NA Intergenic Intergenic -22997 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 367-22 chr3 104613183 104613316 + 3.5 NA Intergenic Intergenic -753464 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 499.5-26 chr8 134119628 134119797 + 3.5 NA Intergenic Intergenic 233216 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 679-5 chr13 106716667 106716982 + 3.5 NA Intergenic L1MB7|LINE|L1 62944 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 737-6 chr2 48037520 48037821 + 3.5 NA Intergenic L1M4|LINE|L1 -131877 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 514-6 chr14 43221443 43221930 + 3.5 NA Intergenic L1MA9|LINE|L1 1285597 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 502-5 chr14 41832175 41832350 + 3.5 NA intron (NM_001330106, intron 2 of 4) ERVL-E-int|LTR|ERVL 225406 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 371-20 chr3 186421783 186421909 + 3.5 NA Intergenic Intergenic -18499 NR_151710 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 890.5-2 chr21 27515309 27515741 + 3.5 NA Intergenic MER131|DNA?|DNA? -206854 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 923 chr20 44456861 44457186 + 3.5 NA intron (NR_132343, intron 2 of 2) intron (NR_132343, intron 2 of 2) -6466 NR_109893 101927242 Hs.143307 NR_109893 ENSG00000168746 LINC01430 - long intergenic non-protein coding RNA 1430 ncRNA 511-28 chr9 29709150 29709663 + 3.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -495805 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 490.5-4 chr12 17660382 17660537 + 3.5 NA Intergenic Intergenic -12840 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 346.5-12 chr2 58042371 58042528 + 3.5 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -4193 NM_001130480 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 715.5-3 chr18 10395930 10396198 + 3.5 NA Intergenic L1MDa|LINE|L1 18306 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 609-6 chr2 66285632 66285918 + 3.5 NA Intergenic Intergenic 72553 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 543.5-3 chr1 101872221 101872425 + 3.5 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 311 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 807.5-5 chr6 53270084 53270332 + 3.5 NA intron (NM_001242830, intron 6 of 6) intron (NM_001242830, intron 6 of 6) -6785 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 637.5-8 chr8 118706782 118707327 + 3.5 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -85091 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 853.5-4 chr8 47937278 47937576 + 3.5 NA intron (NM_001081640, intron 11 of 84) L2a|LINE|L2 22709 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 393-15 chr2 24575292 24575404 + 3.5 NA intron (NM_001362955, intron 3 of 23) L1MEc|LINE|L1 -9129 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 489.5-9 chr2 76261144 76261344 + 3.5 NA Intergenic Intergenic -550329 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 543-10 chr5 42446229 42446473 + 3.5 NA intron (NM_001242401, intron 1 of 10) L2c|LINE|L2 21370 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 382-31 chr3 126679684 126679842 + 3.5 NA Intergenic Intergenic 17682 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 750-13 chr7 48653527 48654068 + 3.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -270750 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 582.5-5 chr18 32802372 32802607 + 3.5 NA Intergenic Intergenic -29466 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 443-38 chr9 84354035 84354233 + 3.5 NA intron (NM_022127, intron 1 of 18) intron (NM_022127, intron 1 of 18) -13376 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 501.5-9 chr16 64929244 64929427 + 3.5 NA Intergenic L1MA9|LINE|L1 192728 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 668-10 chr3 31347525 31347900 + 3.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -185213 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 486.5-12 chr2 166629871 166630046 + 3.5 NA Intergenic L1MA3|LINE|L1 -142987 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 311.5-24 chr2 101980517 101980690 + 3.5 NA Intergenic Intergenic -2862 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 560.5-4 chr11 83924756 83925100 + 3.5 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -242503 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 357.5-8 chr16 52614645 52614841 + 3.5 NA Intergenic Intergenic -7768 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 590-14 chr7 95961333 95961570 + 3.5 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 188945 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 416-27 chr8 107703813 107703953 + 3.5 NA Intergenic Intergenic -205965 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 534.5 chr10 12100769 12101005 + 3.5 NA intron (NM_018706, intron 9 of 16) intron (NM_018706, intron 9 of 16) -28754 NM_001142627 55176 Hs.112955 NM_018144 ENSG00000065665 SEC61A2 - SEC61 translocon alpha 2 subunit protein-coding 877.5-3 chr2 19950654 19951113 + 3.5 NA intron (NM_001006657, intron 14 of 27) MIRc|SINE|MIR 39222 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 554.5-5 chr11 114214371 114214817 + 3.5 NA intron (NM_006006, intron 4 of 6) AluSz6|SINE|Alu -81219 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 424.5-2 chr10 60590324 60590470 + 3.5 NA intron (NM_001204403, intron 2 of 43) MER33|DNA|hAT-Charlie -17441 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 463.5-2 chr11 11360001 11360185 + 3.5 NA intron (NM_198516, intron 6 of 10) intron (NM_198516, intron 6 of 10) -6843 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 472-21 chr6 43954531 43954814 + 3.5 NA Intergenic Intergenic -45913 NR_160956 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 450.5-13 chr5 115351182 115351324 + 3.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -54599 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 885.5-3 chr6 147470028 147470444 + 3.5 NA Intergenic Intergenic -38454 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 445-22 chr6 1049376 1049582 + 3.5 NA intron (NR_027116, intron 1 of 3) L2a|LINE|L2 51853 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 534-24 chr3 152276033 152276321 + 3.5 NA intron (NM_001314057, intron 1 of 11) intron (NM_001314057, intron 1 of 11) -6551 NR_027038 401093 Hs.725347 NR_027037 ENSG00000229619 MBNL1-AS1 - MBNL1 antisense RNA 1 ncRNA 533-18 chr3 74979829 74980004 + 3.5 NA Intergenic Intergenic -234560 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 512.5-6 chr2 164449219 164449408 + 3.5 NA Intergenic Intergenic 119182 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 547-20 chr8 117662763 117662941 + 3.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 142139 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 358-21 chr16 84101500 84101643 + 3.5 NA intron (NM_003791, intron 2 of 22) intron (NM_003791, intron 2 of 22) 15371 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 368-19 chr2 40134763 40134923 + 3.5 NA intron (NM_001351483, intron 8 of 8) intron (NM_001351483, intron 8 of 8) 217209 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 504.5-11 chr7 13191716 13191877 + 3.5 NA Intergenic Intergenic 504163 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 566.5-2 chr13 45903823 45904108 + 3.5 NA Intergenic Intergenic -52212 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 629.5-10 chr8 55542732 55543142 + 3.5 NA TTS (NM_052898) TTS (NM_052898) -21959 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 852-2 chr10 124176316 124176635 + 3.5 NA Intergenic Intergenic -82877 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 535.5-2 chr10 16517026 16517328 + 3.5 NA intron (NM_001010908, intron 1 of 1) intron (NM_001010908, intron 1 of 1) 4702 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 635.5-13 chr8 83633526 83633806 + 3.5 NA Intergenic Intergenic 229908 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 495.5-8 chr2 26857600 26857802 + 3.5 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 9277 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 778.5 chr13 67774788 67775085 + 3.5 NA Intergenic Intergenic 402549 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 330.5-28 chr4 119833084 119833245 + 3.5 NA Intergenic Intergenic -28649 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 522-15 chr17 77112269 77112506 + 3.5 NA intron (NM_001204410, intron 2 of 17) intron (NM_001204410, intron 2 of 17) 22970 NR_106997 102466864 NR_106997 ENSG00000284250 MIR6516 hsa-mir-6516 microRNA 6516 ncRNA 658.5-9 chr4 45442282 45442627 + 3.5 NA Intergenic MER63A|DNA|hAT-Blackjack 681600 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 891-4 chr8 114437841 114438122 + 3.5 NA Intergenic L1MDa|LINE|L1 -1001042 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 560.5-12 chr8 47438622 47438864 + 3.5 NA intron (NM_001080394, intron 7 of 19) intron (NM_001080394, intron 7 of 19) 177805 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 811.5-4 chr8 33095493 33095889 + 3.5 NA Intergenic Intergenic 373856 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 505.5-3 chr1 104618975 104619245 + 3.5 NA Intergenic Intergenic 546087 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 652.5-7 chr8 65941690 65942017 + 3.5 NA Intergenic L1MC4|LINE|L1 -73125 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 735.5-5 chrX 63733130 63733522 + 3.5 NA intron (NM_001369037, intron 2 of 11) intron (NM_001369037, intron 2 of 11) 21797 NM_001173480 23229 Hs.54697 NM_015185 ENSG00000131089 ARHGEF9 COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2 Cdc42 guanine nucleotide exchange factor 9 protein-coding 425-23 chr17 53461485 53461672 + 3.5 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -361349 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 481.5-7 chr20 34786625 34786809 + 3.5 NA intron (NM_001318240, intron 3 of 15) intron (NM_001318240, intron 3 of 15) -4313 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 456-4 chr1 201131574 201131861 + 3.5 NA Intergenic Intergenic -16345 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 755.5 chr11 17715589 17715952 + 3.5 NA Intergenic Intergenic -3801 NM_002478 4654 Hs.181768 NM_002478 ENSG00000129152 MYOD1 MYF3|MYOD|PUM|bHLHc1 myogenic differentiation 1 protein-coding 439-22 chr9 29393532 29393805 + 3.5 NA Intergenic AluSc8|SINE|Alu -180067 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 665-4 chr14 86250347 86250700 + 3.5 NA Intergenic Intergenic 315845 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 487.5-4 chr1 85197198 85197495 + 3.5 NA intron (NM_032184, intron 1 of 6) intron (NM_032184, intron 1 of 6) 3670 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 699.5-3 chr1 237554665 237555042 + 3.5 NA intron (NM_001035, intron 27 of 104) L1ME2|LINE|L1 83734 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 451-23 chr7 78874819 78875038 + 3.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -134060 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 628.5-5 chr14 49761771 49762195 + 3.5 NA Intergenic L1M1|LINE|L1 -6170 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 460.5-32 chr8 27870765 27870937 + 3.5 NA 3' UTR (NM_173833, exon 9 of 9) 3' UTR (NM_173833, exon 9 of 9) 15265 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 373.5-18 chr21 28390058 28390299 + 3.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -149140 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 818-4 chr8 140146760 140147273 + 3.5 NA intron (NM_001160372, intron 17 of 22) MADE1|DNA|TcMar-Mariner -46481 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 710-2 chr10 44729411 44729637 + 3.5 NA Intergenic L1MB8|LINE|L1 -181792 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 1022 chr1 111302870 111303305 + 3.5 NA intron (NM_021797, intron 1 of 8) L1MB3|LINE|L1 12236 NM_021797 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 893.5 chr1 172845947 172846357 + 3.5 NA Intergenic MIRb|SINE|MIR 187049 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 466-29 chr7 49821647 49821857 + 3.5 NA intron (NR_136188, intron 2 of 3) BLACKJACK|DNA|hAT-Blackjack 46419 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 737.5-2 chr17 73536949 73537194 + 3.5 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 23388 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 446-34 chr7 74484126 74484273 + 3.5 NA intron (NM_016328, intron 1 of 26) intron (NM_016328, intron 1 of 26) 30293 NM_005685 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 677-8 chr22 27586674 27587032 + 3.5 NA Intergenic L1ME3G|LINE|L1 214903 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 654-12 chr8 84369968 84370467 + 3.5 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -45267 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 505.5-22 chr8 62878219 62878516 + 3.5 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -99494 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 739.5-6 chr9 133324888 133325312 + 3.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 11088 NR_103874 6838 Hs.274430 NM_006753 ENSG00000148296 SURF6 RRP14 surfeit 6 protein-coding 890-6 chr6 142387012 142387372 + 3.5 NA intron (NM_198569, intron 6 of 24) intron (NM_198569, intron 6 of 24) 85185 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 897-5 chr4 112034973 112035593 + 3.5 NA Intergenic L1MB1|LINE|L1 -110171 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 851-6 chr9 37158802 37159144 + 3.5 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 38375 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 701.5-6 chr9 26452524 26453012 + 3.5 NA Intergenic Intergenic 386093 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 410.5-14 chr3 35484023 35484224 + 3.5 NA Intergenic L1M6|LINE|L1 -90100 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 352.5-29 chr7 71287507 71287665 + 3.5 NA intron (NM_022479, intron 1 of 10) Tigger2a|DNA|TcMar-Tigger -20088 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 550-23 chr7 46888547 46888725 + 3.5 NA Intergenic MSTA|LTR|ERVL-MaLR -191514 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1072 chr8 130608322 130608910 + 3.5 NA Intergenic Intergenic -164942 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 395-27 chr5 116351412 116351541 + 3.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 23094 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 729.5-2 chr14 80340091 80340362 + 3.5 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -109169 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 356.5-8 chr11 97305825 97305998 + 3.5 NA Intergenic MER70A|LTR|ERVL 797486 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 462.5-22 chr7 38884748 38884915 + 3.5 NA intron (NM_014396, intron 2 of 28) intron (NM_014396, intron 2 of 28) 24360 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 897-4 chr4 23175263 23175652 + 3.5 NA Intergenic Intergenic 461368 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 273 chr1 173167350 173167467 + 3.5 NA Intergenic L1MA9|LINE|L1 38124 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 439.5-2 chr1 41313583 41313801 + 3.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -47742 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 441.5-4 chr10 8173387 8173680 + 3.5 NA Intergenic Intergenic 94772 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 703.5-2 chr14 73693382 73693711 + 3.5 NA intron (NM_001201366, intron 8 of 8) L1ME3A|LINE|L1 20838 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 1192.5 chr11 93070008 93070594 + 3.5 NA Intergenic L1ME3|LINE|L1 100678 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 441.5-15 chr5 8908085 8908326 + 3.5 NA Intergenic Intergenic 68473 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 978.5-2 chr7 66958989 66959367 + 3.5 NA TTS (NM_017994) TTS (NM_017994) 36408 NM_016038 51119 Hs.110445 NM_016038 ENSG00000126524 SBDS CGI-97|SDS|SWDS SBDS ribosome maturation factor protein-coding 509.5-3 chr10 120751541 120751891 + 3.5 NA Intergenic L1MEh|LINE|L1 99463 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 537.5-15 chr7 46221509 46221725 + 3.5 NA Intergenic Intergenic -300345 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 1103 chr13 27350401 27350883 + 3.5 NA Intergenic L2b|LINE|L2 -73977 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 671.5-3 chr3 102356078 102356424 + 3.5 NA Intergenic ERVL-E-int|LTR|ERVL -78764 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 654.5-5 chr6 87319007 87319493 + 3.5 NA intron (NM_198568, intron 2 of 2) intron (NM_198568, intron 2 of 2) -3338 NM_020425 57150 Hs.70769 NM_020425 ENSG00000111850 SMIM8 C6orf162|dJ102H19.2 small integral membrane protein 8 protein-coding 535.5-9 chr19 36501712 36501882 + 3.5 NA Intergenic L1M3de|LINE|L1 12170 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 850-9 chr8 88523561 88523890 + 3.5 NA Intergenic MIR|SINE|MIR -196242 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 615-8 chr15 87563018 87563345 + 3.5 NA Intergenic Intergenic -13748 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 528.5-7 chr18 68173845 68174070 + 3.5 NA Intergenic Intergenic -359135 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 426.5-7 chr10 84356610 84356857 + 3.5 NA intron (NM_018999, intron 1 of 10) intron (NM_018999, intron 1 of 10) 28144 NM_001351290 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 656.5-4 chr2 63661481 63661829 + 3.5 NA Intergenic Intergenic 72504 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 801-10 chr6 124339625 124340005 + 3.5 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 56810 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 583-10 chr4 42060589 42060828 + 3.5 NA intron (NM_006345, intron 10 of 17) intron (NM_006345, intron 10 of 17) 70178 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 478-25 chr6 52528655 52528868 + 3.5 NA intron (NM_012288, intron 2 of 10) intron (NM_012288, intron 2 of 10) 48299 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 569.5-11 chr3 103947100 103947349 + 3.5 NA Intergenic L1MCc|LINE|L1 -423108 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 564-22 chr5 133534684 133534967 + 3.5 NA intron (NM_015082, intron 3 of 15) LTR103_Mam|LTR|ERV1? 77716 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 614-11 chr5 99756628 99757057 + 3.5 NA Intergenic Intergenic 222852 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 1011.5 chr22 42862431 42862841 + 3.5 NA Intergenic AluJr|SINE|Alu -5363 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 304.5-38 chr6 87838689 87838805 + 3.5 NA intron (NR_110869, intron 2 of 4) L1MC2|LINE|L1 53887 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 446.5-10 chr2 109662526 109662725 + 3.5 NA Intergenic AluSx|SINE|Alu 48261 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 335-22 chr19 36012351 36012533 + 3.5 NA intron (NM_001297701, intron 4 of 7) intron (NM_001297701, intron 4 of 7) 1771 NM_001297701 84964 Hs.71941 NM_032878 ENSG00000239382 ALKBH6 ABH6 alkB homolog 6 protein-coding 271.5-23 chr22 26488651 26488752 + 3.5 NA intron (NM_001013694, intron 4 of 6) intron (NM_001013694, intron 4 of 6) 4824 NM_001013694 402055 Hs.709914 NM_001013694 ENSG00000100104 SRRD HC/HCC|SRR1L SRR1 domain containing protein-coding 659.5-7 chr4 179090045 179090436 + 3.5 NA Intergenic L1MD1|LINE|L1 -1182304 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 638-3 chr13 103650555 103650788 + 3.5 NA Intergenic L2|LINE|L2 225471 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 697-10 chr8 129656390 129656776 + 3.5 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 23656 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1012 chr3 112986732 112987274 + 3.5 NA Intergenic Intergenic -3950 NM_138485 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 540-14 chr2 146032633 146032883 + 3.5 NA Intergenic L1ME3D|LINE|L1 -554299 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 417-17 chr12 121180272 121180457 + 3.5 NA exon (NM_002562, exon 12 of 13) exon (NM_002562, exon 12 of 13) -29765 NM_001261397 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 762.5-5 chr4 148110158 148110410 + 3.5 NA intron (NM_000901, intron 8 of 8) intron (NM_000901, intron 8 of 8) 327689 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 593.5-4 chr2 44653026 44653408 + 3.5 NA intron (NM_024766, intron 3 of 10) L2c|LINE|L2 285671 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 439.5-11 chr13 71314075 71314290 + 3.5 NA Intergenic Intergenic 299041 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 533-26 chr9 28209388 28209575 + 3.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 509824 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1144.5 chr1 40420340 40420990 + 3.5 NA intron (NM_022733, intron 9 of 9) L1MC4|LINE|L1 23865 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 616.5-14 chr4 121559550 121559937 + 3.5 NA Intergenic Intergenic 137237 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 428.5-2 chr1 187203041 187203284 + 3.5 NA intron (NR_126347, intron 1 of 3) AluSx1|SINE|Alu 110320 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 563.5-7 chr4 171028186 171028453 + 3.5 NA Intergenic Intergenic -12283 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 883.5-2 chr13 19292801 19293322 + 3.5 NA non-coding (NR_027248, exon 14 of 21) non-coding (NR_027248, exon 14 of 21) 51912 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 544-14 chr7 92400406 92400875 + 3.5 NA 3' UTR (NM_019004, exon 20 of 20) 3' UTR (NM_019004, exon 20 of 20) 36674 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 374.5-17 chr2 154845960 154846140 + 3.5 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 147355 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 463.5-10 chr2 167627891 167628067 + 3.5 NA Intergenic L1ME1|LINE|L1 -190693 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 740-3 chr16 14171695 14171941 + 3.5 NA intron (NM_001308142, intron 3 of 16) L1MC4a|LINE|L1 -14868 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 448 chr1 98972427 98972584 + 3.5 NA intron (NM_001037317, intron 1 of 5) intron (NM_001037317, intron 1 of 5) -31771 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 689-13 chr6 98294768 98295129 + 3.5 NA Intergenic Intergenic 270417 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 413-9 chr11 109740911 109741068 + 3.5 NA Intergenic Intergenic 318799 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 873.5-4 chr8 119597561 119598066 + 3.5 NA intron (NM_006209, intron 11 of 25) intron (NM_006209, intron 11 of 25) -4805 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 831-2 chr14 68276733 68277024 + 3.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 351909 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 564.5-8 chr20 42315729 42315891 + 3.5 NA exon (NM_007050, exon 12 of 31) exon (NM_007050, exon 12 of 31) -369673 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 706-6 chr9 14580674 14581191 + 3.5 NA Intergenic L1MA4|LINE|L1 -48855 NM_001369459 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 877-4 chr5 131326742 131327224 + 3.5 NA intron (NM_020240, intron 2 of 5) intron (NM_020240, intron 2 of 5) 62974 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 980 chr2 190282280 190282662 + 3.5 NA intron (NM_198047, intron 6 of 12) MSTB2|LTR|ERVL-MaLR 37355 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 306-24 chr5 102928979 102929112 + 3.5 NA intron (NR_157231, intron 8 of 14) intron (NR_157231, intron 8 of 14) 63222 NR_033440 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 762.5 chr17 62923446 62923848 + 3.5 NA Intergenic Intergenic -20568 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 572-13 chr3 79414290 79414472 + 3.5 NA intron (NR_110133, intron 1 of 2) intron (NR_110133, intron 1 of 2) 2654 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 852-11 chr8 126250749 126251289 + 3.5 NA Intergenic MER103C|DNA|hAT-Charlie -74476 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 605.5 chr11 22141358 22141648 + 3.5 NA Intergenic MIR|SINE|MIR -51582 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 732-2 chr13 34872475 34872841 + 3.5 NA Intergenic L2-3_Crp|LINE|L2 -69629 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 807-9 chr4 44541951 44542417 + 3.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -93375 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 341-38 chr9 42376907 42377064 + 3.5 NA Intergenic MER89-int|LTR|ERV1 178123 NR_126166 100996582 NR_126166 FAM74A7 - family with sequence similarity 74 member A7 ncRNA 419-27 chr6 35370182 35370387 + 3.5 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 27726 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 319-35 chr5 126240561 126240677 + 3.5 NA Intergenic Intergenic 44556 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 548.5-18 chr7 118392148 118392364 + 3.5 NA Intergenic Intergenic 167552 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 692.5-6 chr4 40115682 40115934 + 3.5 NA intron (NM_001318359, intron 8 of 18) L1MEd|LINE|L1 -58609 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 297-37 chr9 30390441 30390596 + 3.5 NA intron (NR_046204, intron 1 of 2) L1PA13|LINE|L1 17936 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 725.5-7 chr18 2331885 2332251 + 3.5 NA Intergenic MIRb|SINE|MIR 239437 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 822.5-4 chr21 21209349 21209698 + 3.5 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 62361 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 411-17 chr2 16670178 16670371 + 3.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -4440 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 693-11 chr5 36104706 36104930 + 3.5 NA intron (NM_001007527, intron 17 of 17) intron (NM_001007527, intron 17 of 17) -37936 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 1021 chr14 70155195 70155616 + 3.5 NA intron (NM_033262, intron 2 of 7) L1MA5|LINE|L1 -31703 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 668.5-4 chr3 56116724 56117090 + 3.5 NA intron (NR_132749, intron 6 of 17) MIRb|SINE|MIR -264313 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 362.5-8 chr12 7107825 7107979 + 3.5 NA promoter-TSS (NR_026947) promoter-TSS (NR_026947) -406 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 442-11 chr2 6107934 6108203 + 3.5 NA Intergenic Intergenic 126090 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 483-19 chr3 112500204 112500361 + 3.5 NA promoter-TSS (NM_181780) promoter-TSS (NM_181780) -810 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 397.5-17 chr2 156815583 156815738 + 3.5 NA Intergenic L1M5|LINE|L1 379281 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 1071.5 chr2 137783985 137784411 + 3.5 NA Intergenic HERV35I-int|LTR|ERV1 143734 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 423-19 chr18 69835673 69835886 + 3.5 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 112094 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 605-10 chr6 153550585 153550944 + 3.5 NA Intergenic Intergenic -419482 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 748 chr10 81049623 81049906 + 3.5 NA Intergenic Intergenic 399967 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 547-6 chr14 98545307 98545496 + 3.5 NA Intergenic L1ME4a|LINE|L1 -166212 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 783.5-7 chr9 32611069 32611378 + 3.5 NA Intergenic Intergenic 24446 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 315.5-34 chr6 93064799 93064926 + 3.5 NA Intergenic Intergenic 354697 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 600.5-7 chr8 29050338 29050616 + 3.5 NA intron (NR_136758, intron 10 of 10) intron (NR_136758, intron 10 of 10) 159163 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 330-5 chr10 12020762 12020867 + 3.5 NA intron (NM_080599, intron 3 of 21) MIR|SINE|MIR 21995 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 963 chr11 78275203 78275737 + 3.5 NA intron (NM_012296, intron 2 of 9) intron (NM_012296, intron 2 of 9) 66410 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 599-16 chr8 142398603 142398798 + 3.5 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 4482 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 764-4 chr20 31562827 31563352 + 3.5 NA intron (NM_178580, intron 10 of 12) intron (NM_178580, intron 10 of 12) 10174 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 503.5-17 chr8 49696677 49696863 + 3.5 NA Intergenic Intergenic -184590 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 597-26 chr9 82045775 82046114 + 3.5 NA Intergenic L1MA9|LINE|L1 57172 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 653.5-6 chr2 149067541 149067901 + 3.5 NA intron (NM_001317006, intron 1 of 4) intron (NM_001317006, intron 1 of 4) -9801 NM_001317004 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 505.5-5 chr10 99654737 99654949 + 3.5 NA Intergenic Intergenic -4666 NM_001349962 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 520.5-4 chr10 67136766 67136980 + 3.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 124607 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 511.5-20 chr7 3917270 3917544 + 3.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -212278 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 319.5-14 chr2 37038517 37038648 + 3.5 NA intron (NM_019024, intron 20 of 35) intron (NM_019024, intron 20 of 35) 45790 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 750-8 chr20 42091491 42091864 + 3.5 NA intron (NM_133170, intron 28 of 31) Charlie30a|DNA|hAT-Charlie -473300 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 363.5-27 chr6 35833540 35833727 + 3.5 NA non-coding (NR_034069, exon 16 of 16) non-coding (NR_034069, exon 16 of 16) 28281 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 489-13 chr14 79761239 79761677 + 3.5 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -449961 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 795.5-5 chr6 101215560 101215876 + 3.5 NA Intergenic Intergenic -183267 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 367.5-20 chr3 24558162 24558303 + 3.5 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -62524 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 968-2 chr4 179983281 179983827 + 3.5 NA Intergenic (AG)n|Simple_repeat|Simple_repeat 1175595 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 403.5-16 chr4 46951494 46951706 + 3.5 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) 41981 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 391.5-34 chr5 150438609 150438797 + 3.5 NA Intergenic AluSq2|SINE|Alu 11036 NM_005617 6208 Hs.744846 NM_005617 ENSG00000164587 RPS14 EMTB|S14 ribosomal protein S14 protein-coding 643.5-14 chr8 26159320 26159717 + 3.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR -114105 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 514-3 chr1 169781280 169781426 + 3.5 NA Intergenic Intergenic 13336 NM_001320201 92342 Hs.33922 NM_033418 ENSG00000171806 METTL18 AsTP2|C1orf156|HPM1 methyltransferase like 18 protein-coding 590.5-5 chr10 93864052 93864236 + 3.5 NA Intergenic LTR33|LTR|ERVL -29834 NR_144336 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 483-36 chr7 110113748 110113913 + 3.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -153617 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 907-3 chr9 113457593 113457879 + 3.5 NA intron (NM_144488, intron 1 of 25) intron (NM_144488, intron 1 of 25) -5964 NM_017790 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 628-4 chr10 22587818 22588270 + 3.5 NA intron (NM_005028, intron 4 of 9) intron (NM_005028, intron 4 of 9) 126064 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 569.5-14 chr5 75993967 75994281 + 3.5 NA Intergenic Intergenic -89259 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 721.5-8 chr8 105862935 105863184 + 3.5 NA intron (NR_125796, intron 2 of 7) (TTGAA)n|Simple_repeat|Simple_repeat 197444 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 638.5 chr1 110825495 110825840 + 3.5 NA Intergenic L1MEd|LINE|L1 -45532 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 383.5-14 chr2 144931450 144931602 + 3.5 NA intron (NR_033870, intron 3 of 4) L1MA9|LINE|L1 263559 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 670-11 chr7 103952432 103952771 + 3.5 NA intron (NM_005045, intron 1 of 64) intron (NM_005045, intron 1 of 64) 36915 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 627-3 chr14 80485054 80485432 + 3.5 NA Intergenic Intergenic -254186 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 745-10 chr6 89499506 89499725 + 3.5 NA intron (NM_001242809, intron 1 of 15) MER20B|DNA|hAT-Charlie -62703 NM_001242811 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 592-5 chr14 53533553 53533926 + 3.5 NA Intergenic Intergenic 380385 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 414.5-22 chr6 35094114 35094315 + 3.5 NA Intergenic L1MDa|LINE|L1 47125 NR_158874 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 505.5-10 chr14 74181794 74181990 + 3.5 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -57557 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 818.5-2 chr18 68519650 68520128 + 3.5 NA Intergenic Intergenic 195219 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 412.5-14 chr2 37114226 37114489 + 3.5 NA intron (NM_002759, intron 14 of 16) L1ME3G|LINE|L1 29906 NM_174931 253635 Hs.595250 NM_174931 ENSG00000152133 GPATCH11 CCDC75|CENP-Y|CENPY G-patch domain containing 11 protein-coding 645-10 chr2 144906521 144906749 + 3.5 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 238668 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 620-11 chr20 32859307 32859499 + 3.5 NA intron (NM_001143967, intron 1 of 26) intron (NM_001143967, intron 1 of 26) 480 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 975-4 chr22 31738582 31738994 + 3.5 NA exon (NM_173566, exon 2 of 9) exon (NM_173566, exon 2 of 9) 11344 NM_173566 253143 Hs.438906 NM_173566 ENSG00000183530 PRR14L C22orf30 proline rich 14 like protein-coding 409.5-23 chr5 77280235 77280368 + 3.5 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 69621 NM_001029853 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 740.5 chr1 14540691 14540919 + 3.5 NA Intergenic Intergenic -57880 NM_001370230 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 756.5-2 chr2 113874228 113874528 + 3.5 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -15556 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 551.5-6 chr3 14175005 14175314 + 3.5 NA intron (NM_001354729, intron 1 of 15) L2a|LINE|L2 3442 NM_001354727 7508 Hs.475538 NM_004628 ENSG00000154767 XPC RAD4|XP3|XPCC|p125 XPC complex subunit, DNA damage recognition and repair factor protein-coding 300-6 chr12 21718809 21718968 + 3.5 NA Intergenic Intergenic 55818 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 476.5-2 chr11 94615840 94615976 + 3.5 NA intron (NM_152431, intron 15 of 19) intron (NM_152431, intron 15 of 19) 48540 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 788.5-3 chr18 12570743 12571026 + 3.5 NA intron (NM_020148, intron 2 of 15) L3|LINE|CR1 85848 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 541.5-20 chr8 86381227 86381492 + 3.5 NA intron (NM_007013, intron 4 of 24) intron (NM_007013, intron 4 of 24) 38812 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 511-9 chr15 75665892 75666070 + 3.5 NA Intergenic L2a|LINE|L2 16974 NM_153271 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 558-18 chr6 129404285 129404483 + 3.5 NA intron (NM_000426, intron 40 of 64) intron (NM_000426, intron 40 of 64) 305793 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 539.5-10 chr15 65381688 65382013 + 3.5 NA 3' UTR (NM_020962, exon 20 of 20) 3' UTR (NM_020962, exon 20 of 20) -3848 NM_004884 9543 Hs.128292 NM_004884 ENSG00000174498 IGDCC3 HsT18880|PUNC immunoglobulin superfamily DCC subclass member 3 protein-coding 551.5-8 chr6 56147232 56147513 + 3.5 NA intron (NR_134849, intron 10 of 29) L2a|LINE|L2 -55710 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 559-26 chr9 127325875 127326198 + 3.5 NA intron (NR_104591, intron 7 of 26) L2a|LINE|L2 61262 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 795.5-4 chr5 109184011 109184417 + 3.5 NA intron (NR_146155, intron 18 of 19) intron (NR_146155, intron 18 of 19) 142155 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 536-20 chr7 107153391 107153560 + 3.5 NA intron (NM_002736, intron 8 of 10) intron (NM_002736, intron 8 of 10) -15486 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 523-18 chr3 27241601 27241823 + 3.5 NA intron (NM_199347, intron 24 of 24) LTR16C|LTR|ERVL -25189 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 585-14 chr5 156708228 156708544 + 3.5 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -141909 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 484.5-24 chr8 83314577 83314802 + 3.5 NA Intergenic MADE1|DNA|TcMar-Mariner -89069 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 394-26 chr8 79796093 79796268 + 3.5 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 28038 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 537-17 chr5 100109413 100109596 + 3.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 278750 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 787 chr2 70181079 70181372 + 3.5 NA exon (NM_001348761, exon 3 of 10) exon (NM_001348761, exon 3 of 10) 9486 NR_145971 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 485.5-13 chr4 81018375 81018628 + 3.5 NA Intergenic Intergenic -12207 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 554.5-7 chr17 77387633 77387894 + 3.5 NA intron (NM_001113494, intron 1 of 10) intron (NM_001113494, intron 1 of 10) 9291 NR_036200 100422851 NR_036200 ENSG00000264060 MIR4316 - microRNA 4316 ncRNA 306.5-2 chr1 150909874 150909988 + 3.5 NA intron (NR_148929, intron 1 of 1) LOR1b|LTR|ERV1 -16332 NM_001366417 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated histone lysine methyltransferase 1 protein-coding 435-27 chr4 124144456 124144718 + 3.5 NA Intergenic Intergenic 370323 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 526.5-3 chr1 242464909 242465332 + 3.5 NA intron (NM_001320272, intron 2 of 10) L1MB5|LINE|L1 -15638 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 700-4 chr14 28153881 28154311 + 3.5 NA Intergenic L1M4|LINE|L1 -480875 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 481.5-6 chr2 58960421 58960617 + 3.5 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -257189 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 573.5-9 chr5 147121174 147121497 + 3.5 NA Intergenic L1MA4A|LINE|L1 -39815 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 735-8 chr8 137348373 137348775 + 3.5 NA Intergenic L1MA4|LINE|L1 65014 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 630.5-13 chr9 80690012 80690207 + 3.5 NA Intergenic MSTA|LTR|ERVL-MaLR 715086 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 419.5-14 chr4 52235168 52235313 + 3.5 NA Intergenic Intergenic 183936 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 641.5 chr12 433947 434246 + 3.5 NA intron (NM_001130148, intron 7 of 10) intron (NM_001130148, intron 7 of 10) -25843 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 1190.5-2 chr8 119730726 119731270 + 3.5 NA 3' UTR (NM_003184, exon 26 of 26) 3' UTR (NM_003184, exon 26 of 26) -57608 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 414-21 chr2 168522329 168522510 + 3.5 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) -60524 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 902-3 chr8 144210624 144211081 + 3.5 NA intron (NM_001288814, intron 11 of 41) L1MB3|LINE|L1 51885 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 707 chr1 41914702 41915029 + 3.5 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 4057 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 825-2 chr21 18970438 18970791 + 3.5 NA Intergenic LTR67B|LTR|ERVL -210802 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 337-3 chr1 76164200 76164352 + 3.5 NA intron (NM_001349108, intron 1 of 3) LTR79|LTR|ERVL 89530 NM_001349105 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 567.5-15 chr8 52379396 52379744 + 3.5 NA intron (NR_148195, intron 2 of 3) Tigger2b_Pri|DNA|TcMar-Tigger 30186 NM_001352883 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 720.5 chr1 55144659 55144988 + 3.5 NA intron (NM_015306, intron 20 of 67) AluSx|SINE|Alu 70541 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 622-14 chr7 109460793 109461077 + 3.5 NA Intergenic Intergenic 499278 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 824-6 chr8 119139506 119139961 + 3.5 NA Intergenic L1ME2|LINE|L1 -68630 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 382.5-23 chr9 24655294 24655465 + 3.5 NA Intergenic L1MC|LINE|L1 -109482 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 877-3 chr5 67400596 67400846 + 3.5 NA Intergenic Intergenic -203922 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 496.5-7 chr17 68421250 68421432 + 3.5 NA TTS (NM_001267727) TTS (NM_001267727) 3207 NR_030365 693220 NR_030365 ENSG00000207561 MIR635 MIRN635|hsa-mir-635 microRNA 635 ncRNA 384-31 chr8 138586015 138586209 + 3.5 NA Intergenic Intergenic -88382 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 497.5-4 chr10 7853706 7853949 + 3.5 NA intron (NM_031923, intron 2 of 6) MER63D|DNA|hAT-Blackjack 35322 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 453.5-15 chr5 122645841 122646066 + 3.5 NA intron (NR_109881, intron 8 of 11) L1MA4|LINE|L1 -61353 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 1029 chr2 35892773 35893130 + 3.5 NA Intergenic L1MA3|LINE|L1 421546 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 446-16 chr15 67342203 67342363 + 3.5 NA intron (NM_001031715, intron 5 of 20) AluJo|SINE|Alu -87085 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 631.5-4 chr17 71096514 71096717 + 3.5 NA Intergenic Intergenic 105564 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 806-2 chr12 7387100 7387435 + 3.5 NA intron (NM_001297650, intron 8 of 19) L1MA1|LINE|L1 56918 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 604.5-9 chr3 24135174 24135460 + 3.5 NA intron (NM_001354708, intron 7 of 9) intron (NM_001354708, intron 7 of 9) -16007 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 827-4 chr4 179955554 179956080 + 3.5 NA Intergenic Intergenic 1203332 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 404-29 chr5 15423668 15423846 + 3.5 NA Intergenic Intergenic -76423 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 693-10 chr4 47007265 47007625 + 3.5 NA Intergenic L1M5|LINE|L1 -13864 NM_001204267 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 656 chr1 41794250 41794682 + 3.5 NA intron (NM_024503, intron 1 of 8) L1ME4a|LINE|L1 124456 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 672.5-4 chr22 20065829 20066060 + 3.5 NA non-coding (NR_104274, exon 7 of 7) non-coding (NR_104274, exon 7 of 7) -14288 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 448.5-20 chr8 125467488 125467638 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X 35354 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 796-6 chr8 128397965 128398298 + 3.5 NA Intergenic Intergenic 166548 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 454-33 chrX 150750170 150750418 + 3.5 NA intron (NR_148676, intron 12 of 16) intron (NR_148676, intron 12 of 16) 38539 NM_001353996 8776 Hs.347187 NM_003828 ENSG00000063601 MTMR1 - myotubularin related protein 1 protein-coding 585.5 chr11 35964156 35964364 + 3.5 NA intron (NM_001304264, intron 1 of 5) MIRb|SINE|MIR 20198 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 1006-6 chr7 104992387 104992778 + 3.5 NA Intergenic Intergenic -1417 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 440-14 chr18 6863447 6863645 + 3.5 NA intron (NM_001010000, intron 4 of 16) intron (NM_001010000, intron 4 of 16) 29061 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 476-2 chr1 187782716 187782974 + 3.5 NA Intergenic Intergenic 339217 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 679.5-2 chr10 96474160 96474612 + 3.5 NA intron (NM_012465, intron 2 of 20) intron (NM_012465, intron 2 of 20) 39540 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 544-16 chr8 74046325 74046619 + 3.5 NA Intergenic Intergenic 55080 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 691-6 chr3 16290173 16290432 + 3.5 NA intron (NM_001330670, intron 5 of 8) intron (NM_001330670, intron 5 of 8) 25090 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 397.5-6 chr10 89568213 89568368 + 3.5 NA Intergenic Intergenic 24537 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 543.5-9 chr2 32379020 32379463 + 3.5 NA intron (NM_016252, intron 2 of 73) intron (NM_016252, intron 2 of 73) 22213 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 795 chr10 97728634 97729145 + 3.5 NA Intergenic AluSz6|SINE|Alu -8232 NM_001174119 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 1005.5-3 chr2 62710196 62710575 + 3.5 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 3488 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 433-31 chr8 132926944 132927203 + 3.5 NA intron (NM_003235, intron 22 of 47) intron (NM_003235, intron 22 of 47) 60115 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 699-8 chr19 37374729 37375173 + 3.5 NA intron (NM_032453, intron 2 of 4) L2a|LINE|L2 3852 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 607-19 chr3 89363613 89363952 + 3.5 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 256161 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 682-15 chr5 22387901 22388216 + 3.5 NA intron (NM_001364104, intron 2 of 13) MER110-int|LTR|ERV1 -174208 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 465.5-2 chr10 93623333 93623481 + 3.5 NA intron (NM_006204, intron 4 of 21) L1MC2|LINE|L1 10870 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 684.5-2 chr13 57969659 57969891 + 3.5 NA Intergenic Intergenic -196052 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 532.5-19 chr8 84597016 84597202 + 3.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -108818 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 479.5-7 chr3 61233452 61233644 + 3.5 NA intron (NM_001320900, intron 1 of 9) intron (NM_001320900, intron 1 of 9) 17904 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 830-6 chr9 71554277 71554686 + 3.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -107510 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 541.5-5 chr11 95334416 95334699 + 3.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -102082 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 488-13 chr3 57580180 57580412 + 3.5 NA intron (NM_001660, intron 3 of 5) intron (NM_001660, intron 3 of 5) 17048 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 767-2 chr11 1266209 1266616 + 3.5 NA Intergenic AluSx|SINE|Alu 9807 NR_106802 102466725 NR_106802 ENSG00000275669 MIR6744 hsa-mir-6744 microRNA 6744 ncRNA 509.5-4 chr12 2607814 2608101 + 3.5 NA intron (NM_199460, intron 27 of 49).2 intron (NM_199460, intron 27 of 49).2 64263 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 553-9 chr5 15195222 15195463 + 3.5 NA intron (NR_109944, intron 2 of 2) MLT1H|LTR|ERVL-MaLR 71218 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 523-20 chr4 44648863 44649424 + 3.5 NA intron (NM_182592, intron 2 of 5) L2c|LINE|L2 2498 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 715.5-14 chr8 124212914 124213360 + 3.5 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 34261 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 775.5-2 chr4 65631339 65631686 + 3.5 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 37976 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 695.5-6 chr8 83105757 83106054 + 3.5 NA Intergenic Intergenic 193801 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 524.5-13 chr5 29663927 29664079 + 3.5 NA Intergenic Intergenic -216557 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 458-30 chr7 47152562 47152841 + 3.5 NA Intergenic MIR|SINE|MIR 312102 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 365.5-9 chr2 105351487 105351603 + 3.5 NA Intergenic L1MC3|LINE|L1 14005 NM_024093 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 716-5 chr4 110568919 110569319 + 3.5 NA Intergenic Intergenic 46339 NR_147204 110231149 Hs.436030 NR_147203 ENSG00000250103 PANCR - PITX2 adjacent non-coding RNA ncRNA 905 chr17 44267536 44267979 + 3.5 NA intron (NM_000342, intron 1 of 19) intron (NM_000342, intron 1 of 19) 378 NM_000342 6521 Hs.210751 NM_000342 ENSG00000004939 SLC4A1 AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR solute carrier family 4 member 1 (Diego blood group) protein-coding 820.5-3 chr3 188677831 188678305 + 3.5 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -10713 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 399.5-25 chr6 129279956 129280148 + 3.5 NA intron (NM_000426, intron 17 of 64) intron (NM_000426, intron 17 of 64) 396911 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 968 chr12 84851477 84851930 + 3.5 NA Intergenic THE1B|LTR|ERVL-MaLR 61096 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 561.5-8 chr2 47626163 47626364 + 3.5 NA Intergenic L2|LINE|L2 -55932 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 490.5-14 chr3 188451483 188451804 + 3.5 NA intron (NM_001167672, intron 2 of 9) L2b|LINE|L2 117023 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 456.5-2 chr1 61665745 61665936 + 3.5 NA Intergenic Intergenic 11598 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 749.5-3 chr11 105543892 105544148 + 3.5 NA Intergenic Intergenic -66053 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 469.5-7 chr14 50710795 50710979 + 3.5 NA Intergenic L3|LINE|CR1 -42581 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 539.5-20 chr8 61292211 61292430 + 3.5 NA intron (NM_173519, intron 1 of 5) intron (NM_173519, intron 1 of 5) 4350 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 267.5-29 chr8 86151319 86151398 + 3.5 NA intron (NM_152565, intron 6 of 7) intron (NM_152565, intron 6 of 7) 52448 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 748-15 chr8 89012785 89013048 + 3.5 NA Intergenic Intergenic -685433 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 401.5-20 chr3 55346926 55347138 + 3.5 NA Intergenic MER63B|DNA|hAT-Blackjack 134366 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 426.5-27 chr8 99548145 99548349 + 3.5 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) -11386 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 560.5-5 chr13 49424213 49424436 + 3.5 NA intron (NM_001287337, intron 3 of 11) L1MC3|LINE|L1 -10573 NM_001287339 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 565.5-16 chr8 127360529 127360730 + 3.5 NA intron (NR_117099, intron 3 of 3) MER57D|LTR|ERV1 -39770 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 921-3 chr8 85196975 85197406 + 3.5 NA intron (NM_001083589, intron 1 of 7) intron (NM_001083589, intron 1 of 7) 9525 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 823 chr1 248672652 248672929 + 3.5 NA Intergenic Intergenic 9514 NM_001004734 401994 Hs.449973 NM_001004734 ENSG00000189181 OR14I1 OR5BU1|OR5BU1P olfactory receptor family 14 subfamily I member 1 protein-coding 350-28 chr5 36006615 36006779 + 3.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5675 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 636-2 chr11 77811379 77811621 + 3.5 NA intron (NM_016578, intron 1 of 15) L2c|LINE|L2 9334 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 529-4 chr12 45566365 45566553 + 3.5 NA Intergenic L2a|LINE|L2 161462 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 530.5-11 chr3 77641776 77641968 + 3.5 NA intron (NM_001290039, intron 25 of 26) intron (NM_001290039, intron 25 of 26) 407091 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 736.5-7 chr8 4712709 4713003 + 3.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 282058 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 357-4 chr10 7741007 7741138 + 3.5 NA intron (NM_002216, intron 16 of 20) Charlie19a|DNA|hAT-Charlie 37756 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 581.5-19 chr7 145798454 145798692 + 3.5 NA Intergenic Intergenic -962520 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 594-4 chr11 129537086 129537379 + 3.5 NA Intergenic Intergenic 80037 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 349-24 chr21 17550844 17551054 + 3.5 NA intron (NM_001207065, intron 2 of 2) intron (NM_001207065, intron 2 of 2) 37906 NM_001338 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 818.5 chr12 72927862 72928350 + 3.5 NA Intergenic L1PB4|LINE|L1 -231084 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 701.5 chr11 84254450 84254787 + 3.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 18662 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 448-33 chr8 121243253 121243669 + 3.5 NA Intergenic Intergenic -395885 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 669-9 chr2 34512524 34513050 + 3.5 NA Intergenic Intergenic -164770 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 698.5-5 chr9 32011093 32011395 + 3.5 NA Intergenic MER52A|LTR|ERV1 -373359 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 537-13 chr2 205481032 205481220 + 3.5 NA intron (NM_057177, intron 19 of 21) L2a|LINE|L2 -201374 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 686.5 chr10 116233548 116233919 + 3.5 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) 22062 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 848-4 chr9 19870743 19871222 + 3.5 NA Intergenic L1MB7|LINE|L1 -83963 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 375.5-18 chr20 20840366 20840534 + 3.5 NA Intergenic AluSx1|SINE|Alu -127806 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 524.5-6 chr15 81401025 81401191 + 3.5 NA intron (NR_120365, intron 6 of 6) MLT1D|LTR|ERVL-MaLR -26895 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 351.5-21 chr6 37962017 37962195 + 3.5 NA intron (NM_021943, intron 2 of 5) L1M1|LINE|L1 142379 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 700.5-2 chr2 238677470 238677898 + 3.5 NA Intergenic L1MC5|LINE|L1 -122185 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 850-4 chr15 49610610 49610934 + 3.5 NA intron (NM_001330293, intron 3 of 10) intron (NM_001330293, intron 3 of 10) 10046 NM_001330293 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 509.5-7 chr14 66850723 66850973 + 3.5 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -338592 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 596-17 chr8 130905596 130905905 + 3.5 NA intron (NM_001115, intron 6 of 17) AluJb|SINE|Alu 135159 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 712.5-5 chr2 30752511 30752825 + 3.5 NA intron (NM_144575, intron 10 of 22) MIR1_Amn|SINE|MIR 54778 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 311.5-28 chr20 58540807 58540961 + 3.5 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -25485 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 652-4 chr15 98794977 98795205 + 3.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 10665 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 387-37 chr8 80943517 80943693 + 3.5 NA Intergenic Intergenic -68824 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 266.5-9 chr16 6917409 6917548 + 3.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 143669 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 418-27 chr7 100136956 100137174 + 3.5 NA Intergenic AluSx3|SINE|Alu 10098 NM_203397 255374 Hs.632319 NM_203397 ENSG00000214309 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 509.5-5 chr12 13701637 13701829 + 3.5 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 278623 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 694.5-4 chr6 143378306 143378678 + 3.5 NA Intergenic Intergenic 64185 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 416-8 chr11 73488641 73488846 + 3.5 NA intron (NM_001286051, intron 1 of 5) L2a|LINE|L2 109369 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 465-17 chr12 15172160 15172472 + 3.5 NA intron (NM_032918, intron 2 of 4) L1MB8|LINE|L1 20393 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 348.5-7 chr14 67683702 67683863 + 3.5 NA intron (NM_016026, intron 6 of 6) MLT1K|LTR|ERVL-MaLR -9150 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 456-32 chr7 127100142 127100332 + 3.5 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) -42053 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 530-10 chr14 81685985 81686150 + 3.5 NA Intergenic Intergenic 57071 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 676.5-4 chr12 42157303 42157537 + 3.5 NA non-coding (NR_135139, exon 7 of 7) non-coding (NR_135139, exon 7 of 7) -12546 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 367.5-2 chr1 57450950 57451094 + 3.5 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -26101 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 714-3 chr21 34075627 34075930 + 3.5 NA intron (NM_032476, intron 1 of 2) intron (NM_032476, intron 1 of 2) 2200 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 464.5-24 chr9 88819323 88819488 + 3.5 NA Intergenic MER45A|DNA|hAT-Tip100 -73500 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 805.5-2 chr2 219059579 219059923 + 3.5 NA intron (NM_002181, intron 1 of 2) intron (NM_002181, intron 1 of 2) -1001 NR_036081 100422957 NR_036081 ENSG00000264755 MIR3131 mir-3131 microRNA 3131 ncRNA 576-21 chr9 83966095 83966316 + 3.5 NA Intergenic SVA_E|Retroposon|SVA 3652 NR_029605 407043 NR_029605 ENSG00000284179 MIR7-1 MIRN7-1|hsa-mir-7-1|mir-7-1 microRNA 7-1 ncRNA 442-6 chr12 10158041 10158474 + 3.5 NA TTS (NM_002543) TTS (NM_002543) -12342 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 405-9 chr12 40597706 40597863 + 3.5 NA Intergenic L2a|LINE|L2 -94655 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 387-10 chr14 76005657 76005827 + 3.5 NA intron (NM_001102564, intron 2 of 8) L1MEf|LINE|L1 19979 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 247.5-6 chr10 30319325 30319433 + 3.5 NA intron (NM_018109, intron 6 of 8) intron (NM_018109, intron 6 of 8) 29959 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 645-11 chr2 202582268 202582594 + 3.5 NA Intergenic L1PA15-16|LINE|L1 -52538 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 434-27 chr8 24977003 24977178 + 3.5 NA Intergenic L1MB2|LINE|L1 -20221 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 595 chr1 89122175 89122382 + 3.5 NA intron (NM_004120, intron 1 of 10) L1MC4a|LINE|L1 3836 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 854-10 chr7 32060495 32060956 + 3.5 NA intron (NM_001191059, intron 2 of 18) intron (NM_001191059, intron 2 of 18) 9682 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1028.5-3 chr7 87198888 87199472 + 3.5 NA intron (NR_138030, intron 1 of 3) intron (NR_138030, intron 1 of 3) 20552 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 487.5-5 chr1 204982067 204982405 + 3.5 NA intron (NM_001005388, intron 21 of 29) MIR3|SINE|MIR 38010 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 560-11 chr20 35991671 35991908 + 3.5 NA intron (NM_001365709, intron 7 of 11) MIR|SINE|MIR 23199 NM_080834 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 507.5 chr1 57433752 57433985 + 3.5 NA intron (NM_001353980, intron 4 of 5) L1ME2|LINE|L1 -8947 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 1006-5 chr12 62328222 62328565 + 3.5 NA intron (NR_147082, intron 6 of 21) MER58A|DNA|hAT-Charlie 67989 NM_001351166 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 660 chr1 82996085 82996373 + 3.5 NA intron (NR_147074, intron 3 of 10) intron (NR_147074, intron 3 of 10) -10021 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 1018.5-2 chr8 139289378 139289949 + 3.5 NA Intergenic THE1B|LTR|ERVL-MaLR -375622 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1005-2 chr7 98206771 98207373 + 3.5 NA 3' UTR (NM_014916, exon 14 of 14) 3' UTR (NM_014916, exon 14 of 14) -5182 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 822.5-8 chr9 31589634 31590103 + 3.5 NA Intergenic Intergenic -208378 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 417-3 chr1 112616353 112616514 + 3.5 NA intron (NM_017744, intron 2 of 14) intron (NM_017744, intron 2 of 14) 2708 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 852.5-2 chr4 35775985 35776460 + 3.5 NA Intergenic Intergenic 467717 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 569-14 chr4 79295688 79295918 + 3.5 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 30258 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 710-10 chr3 38367480 38367844 + 3.5 NA intron (NR_146068, intron 5 of 16) intron (NR_146068, intron 5 of 16) 20877 NM_001349178 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 577.5-6 chr10 96559204 96559483 + 3.5 NA intron (NM_020123, intron 5 of 14) tRNA-Arg-AGA|tRNA|tRNA 27669 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 511-4 chr10 11873954 11874147 + 3.5 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 20660 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 666-10 chr5 117409658 117409918 + 3.5 NA Intergenic MIRc|SINE|MIR -5724 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 587.5-20 chr7 105545489 105545688 + 3.5 NA intron (NM_001346603, intron 4 of 11) AluSx1|SINE|Alu 13387 NM_021930 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 1256.5 chr11 41051574 41052271 + 3.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 407714 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 331.5-23 chr7 47505937 47506062 + 3.5 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -41196 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 676 chr10 114374781 114375205 + 3.5 NA intron (NM_001351073, intron 1 of 19) intron (NM_001351073, intron 1 of 19) 29509 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 718.5-6 chr15 91667572 91667805 + 3.5 NA Intergenic Intergenic -186020 NM_013272 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 530-12 chr17 77074954 77075212 + 3.5 NA Intergenic Intergenic -13560 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 864.5 chr14 61363901 61364207 + 3.5 NA intron (NM_006255, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat 42611 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 933.5 chr3 171997447 171997842 + 3.5 NA Intergenic L1MEc|LINE|L1 -41934 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 583.5-15 chr6 96011393 96011633 + 3.5 NA Intergenic L1M7|LINE|L1 -4461 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 300.5-21 chr2 65559710 65559800 + 3.5 NA Intergenic L3|LINE|CR1 -127156 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 426-33 chr4 76491583 76491805 + 3.5 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 56465 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 571.5-10 chr7 29606968 29607158 + 3.5 NA Intergenic Intergenic 41530 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 1035-2 chr19 11288395 11288747 + 3.5 NA Intergenic Intergenic -7589 NR_104199 26526 Hs.579784 NM_012466 ENSG00000130167 TSPAN16 TM-8|TM4-B|TM4SF16 tetraspanin 16 protein-coding 1081.5 chr1 223454936 223455601 + 3.5 NA Intergenic Intergenic 61853 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 455-6 chr11 22307669 22307866 + 3.5 NA Intergenic HERV16-int|LTR|ERVL -30614 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 959.5 chr8 37893547 37893960 + 3.5 NA intron (NM_001002814, intron 1 of 5) AluJo|SINE|Alu 5744 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 592-6 chr16 1868770 1868976 + 3.5 NA intron (NM_001163560, intron 1 of 13) AluY|SINE|Alu 3291 NM_001163560 254528 Hs.729604 NM_152764 ENSG00000162039 MEIOB C16orf73|SPGF22|gs129 meiosis specific with OB-fold protein-coding 563-2 chr12 41378846 41379121 + 3.5 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -58756 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 1005.5 chr10 72345630 72346132 + 3.5 NA intron (NR_157570, intron 1 of 8) AluSx1|SINE|Alu 9038 NM_001365081 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 571.5-8 chr5 63134311 63134514 + 3.5 NA Intergenic L1MD3|LINE|L1 555593 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 614.5-3 chr17 79683359 79683682 + 3.5 NA Intergenic L1ME3D|LINE|L1 23729 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 468.5 chr10 27534830 27535298 + 3.5 NA intron (NM_001256415, intron 5 of 5) L2a|LINE|L2 30760 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 414-25 chr3 127814423 127814637 + 3.5 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 8352 NM_007283 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 377.5-18 chr8 79473930 79474037 + 3.5 NA Intergenic Intergenic -137134 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 377-6 chr12 14623699 14623806 + 3.5 NA intron (NM_004963, intron 21 of 26) MSTA|LTR|ERVL-MaLR -55869 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 521.5-6 chr5 134529477 134529686 + 3.5 NA intron (NM_015288, intron 1 of 10) MIR|SINE|MIR 3473 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 609-15 chr5 15556225 15556414 + 3.5 NA intron (NM_001278317, intron 1 of 3) MLT2B1|LTR|ERVL 54881 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 828-2 chr2 192631260 192631527 + 3.5 NA Intergenic Intergenic -118452 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 511.5-26 chrX 66531773 66532054 + 3.5 NA Intergenic L1M3a|LINE|L1 84117 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 568.5-9 chr5 1226414 1226701 + 3.5 NA intron (NM_182632, intron 1 of 11) intron (NM_182632, intron 1 of 11) 1176 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 730.5-3 chr8 87832270 87832549 + 3.5 NA Intergenic LTR41B|LTR|ERVL 41606 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 445-25 chr7 1878977 1879124 + 3.5 NA intron (NM_001013837, intron 18 of 18) L1ME4a|LINE|L1 -34797 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 726.5-7 chr9 70839019 70839359 + 3.5 NA intron (NM_001366143, intron 5 of 25) intron (NM_001366143, intron 5 of 25) -29105 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 915.5-3 chr7 85509426 85509774 + 3.5 NA Intergenic LTR8B|LTR|ERV1 88478 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1032.5-3 chr8 32131060 32131447 + 3.5 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 105035 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 369.5-17 chr2 148456016 148456202 + 3.5 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -188642 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 475-15 chr2 19721465 19721648 + 3.5 NA Intergenic L2a|LINE|L2 -147298 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 724-11 chr5 147291165 147291402 + 3.5 NA intron (NM_001112724, intron 4 of 12) LTR49-int|LTR|ERV1 56257 NM_001287740 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 714.5-2 chr11 116594811 116595252 + 3.5 NA Intergenic Intergenic -44391 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 396.5-24 chr3 100123628 100123778 + 3.5 NA intron (NM_001167924, intron 1 of 9) intron (NM_001167924, intron 1 of 9) 8773 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 429.5-16 chr3 148252383 148252641 + 3.5 NA Intergenic LTR37B|LTR|ERV1 -28379 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 375-12 chr14 71211322 71211494 + 3.5 NA Intergenic L1MA8|LINE|L1 -109068 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 367-33 chr7 78525897 78526021 + 3.5 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 178717 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 541.5-21 chr8 139720169 139720467 + 3.5 NA Intergenic MIR1_Amn|SINE|MIR -17195 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 611.5-7 chr5 118040952 118041221 + 3.5 NA intron (NR_104997, intron 2 of 2) UCON22|Unknown|Unknown -241488 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 951.5-2 chr4 58098184 58098547 + 3.5 NA Intergenic Intergenic 437963 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 512-5 chr12 101065980 101066278 + 3.5 NA intron (NM_001286616, intron 13 of 26) L1MA2|LINE|L1 -72429 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 769.5-6 chr20 23058907 23059238 + 3.5 NA Intergenic Intergenic -9408 NM_000361 7056 Hs.2030 NM_000361 ENSG00000178726 THBD AHUS6|BDCA3|CD141|THPH12|THRM|TM thrombomodulin protein-coding 399-14 chr15 27361450 27361654 + 3.5 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -200233 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 511-26 chr6 122971055 122971313 + 3.5 NA Intergenic Intergenic -25051 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 673.5-10 chr9 23433597 23434309 + 3.5 NA Intergenic Intergenic 238446 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 449-10 chr12 54445896 54446066 + 3.5 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 26196 NR_120488 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 624.5-5 chr14 42702624 42702921 + 3.5 NA Intergenic Intergenic 1095916 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 329.5-4 chr1 204965897 204966064 + 3.5 NA intron (NM_001160332, intron 8 of 27) MIRb|SINE|MIR 21754 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 932.5 chr5 167125401 167125902 + 3.5 NA intron (NM_001122679, intron 1 of 29) (ATAC)n|Simple_repeat|Simple_repeat 42750 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 343.5-10 chr12 25920128 25920241 + 3.5 NA Intergenic L1MC4|LINE|L1 37401 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 529-2 chr10 66274625 66274948 + 3.5 NA intron (NM_001127384, intron 13 of 17) L1M5|LINE|L1 -651250 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 432.5-6 chr14 52767765 52767925 + 3.5 NA intron (NM_001130701, intron 10 of 11) MER5B|DNA|hAT-Charlie 23762 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 676.5-2 chr1 202125660 202125934 + 3.5 NA intron (NM_004767, intron 1 of 1) AluSz|SINE|Alu 2880 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2|ETBRLP2 G protein-coupled receptor 37 like 1 protein-coding 807-4 chr12 39169863 39170112 + 3.5 NA Intergenic AluSz|SINE|Alu -264396 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 643.5-4 chr18 48745920 48746241 + 3.5 NA intron (NM_014772, intron 7 of 11) intron (NM_014772, intron 7 of 11) 75480 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 456-24 chr4 179077726 179077964 + 3.5 NA Intergenic L1ME3A|LINE|L1 -1169909 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 352-31 chr4 77169926 77170029 + 3.5 NA TTS (NM_004354) TTS (NM_004354) 12770 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 408-5 chr10 65025695 65025909 + 3.5 NA Intergenic Intergenic -101284 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 396-13 chr15 89833214 89833482 + 3.5 NA non-coding (NR_037582, exon 6 of 6) non-coding (NR_037582, exon 6 of 6) 17373 NR_049817 100847059 NR_049817 ENSG00000264966 MIR5094 - microRNA 5094 ncRNA 389.5-13 chr17 58515845 58515994 + 3.5 NA intron (NM_004687, intron 2 of 18) intron (NM_004687, intron 2 of 18) 1961 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 353.5-18 chr20 59220186 59220530 + 3.5 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 29338 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 491-17 chr3 160737498 160737727 + 3.5 NA Intergenic Intergenic -18619 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 829-3 chr17 62949769 62950102 + 3.5 NA Intergenic Intergenic 5720 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 650.5-3 chr12 38919217 38919459 + 3.5 NA Intergenic Intergenic -13747 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 495.5 chr1 85367434 85367670 + 3.5 NA intron (NM_001134445, intron 2 of 6) MIRb|SINE|MIR 36954 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 558-21 chr9 73334703 73335011 + 3.5 NA Intergenic AluJb|SINE|Alu 182992 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 617.5-4 chr10 82151672 82152002 + 3.5 NA intron (NR_163251, intron 2 of 9) MIRb|SINE|MIR 81083 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 584.5-6 chr3 5364542 5364758 + 3.5 NA Intergenic Intergenic -114395 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 390.5-19 chr20 41564484 41564692 + 3.5 NA intron (NM_032221, intron 1 of 36) L1ME1|LINE|L1 53789 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1077 chr15 51447587 51448039 + 3.5 NA TTS (NM_015263) TTS (NM_015263) 70567 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 606.5-9 chrUn_KI270751v1 150085 150424 + 3.5 NA NA (CCATT)n|Simple_repeat|Simple_repeat NA NA 773.5-2 chr2 30410921 30411233 + 3.5 NA Intergenic Intergenic -36169 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 861 chr3 178353844 178354130 + 3.5 NA Intergenic Intergenic -65214 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 406.5-3 chr10 42769638 42769823 + 3.5 NA TTS (NR_134498) TTS (NR_134498) -13065 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 1070 chr5 170939913 170940272 + 3.5 NA intron (NM_022897, intron 12 of 27) L1ME3F|LINE|L1 78074 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 795-3 chr2 152283577 152283996 + 3.5 NA Intergenic MER63C|DNA|hAT-Blackjack -51388 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 520.5-19 chr8 78272283 78272591 + 3.5 NA Intergenic L1MC2|LINE|L1 -243903 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 738 chr11 60857321 60857690 + 3.5 NA Intergenic Intergenic -1555 NM_004778 11251 Hs.299567 NM_004778 ENSG00000183134 PTGDR2 CD294|CRTH2|DL1R|DP2|GPR44 prostaglandin D2 receptor 2 protein-coding 581.5-9 chr2 180329604 180329952 + 3.5 NA Intergenic L1MA2|LINE|L1 -322481 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 748-14 chr7 96565385 96565786 + 3.5 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) -62062 NR_163948 744-5 chr12 63481393 63481605 + 3.5 NA Intergenic Intergenic 186994 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 638.5-5 chr18 13176426 13176749 + 3.5 NA Intergenic L1MA9|LINE|L1 -42173 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 533-21 chr4 62189279 62189608 + 3.5 NA Intergenic LTR85c|LTR|Gypsy? -27678 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 356-35 chr6 148828208 148828378 + 3.5 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 81263 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 471.5-14 chr3 55037644 55037818 + 3.5 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -70629 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 572.5-8 chr8 57784040 57784298 + 3.5 NA Intergenic Intergenic 38020 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 961-3 chr5 7435872 7436362 + 3.5 NA intron (NM_020546, intron 2 of 24) Tigger17a|DNA|TcMar-Tigger 39979 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 418.5-15 chr2 201206756 201206894 + 3.5 NA intron (NM_032977, intron 7 of 9) intron (NM_032977, intron 7 of 9) 23684 NM_001230 843 Hs.5353 NM_001230 ENSG00000003400 CASP10 ALPS2|FLICE2|MCH4 caspase 10 protein-coding 574.5-7 chr17 959265 959589 + 3.5 NA intron (NM_022463, intron 1 of 7) intron (NM_022463, intron 1 of 7) 20349 NM_022463 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 528-31 chr7 81455416 81455603 + 3.5 NA Intergenic Intergenic 106310 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 737-7 chr22 29631001 29631328 + 3.5 NA intron (NR_156186, intron 2 of 16) MamRTE1|LINE|RTE-BovB 27531 NM_181832 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 671-11 chr4 40659287 40659557 + 3.5 NA Intergenic Intergenic -28828 NM_001371114 760-4 chr3 115849218 115849456 + 3.5 NA intron (NM_001318915, intron 4 of 8) intron (NM_001318915, intron 4 of 8) 55789 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 574-15 chr5 5893874 5894156 + 3.5 NA Intergenic AluSx|SINE|Alu 443277 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 859.5-4 chr5 42283320 42283704 + 3.5 NA Intergenic Intergenic -108167 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 476.5-16 chr7 90654334 90654573 + 3.5 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -54945 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 685-7 chr2 41631992 41632209 + 3.5 NA Intergenic Intergenic -245455 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 993-2 chr6 10131580 10131972 + 3.5 NA Intergenic L1M4b|LINE|L1 -272726 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 384-7 chr13 54030780 54030936 + 3.5 NA Intergenic Intergenic 102013 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 920-4 chr2 63947037 63947480 + 3.5 NA intron (NM_001005739, intron 9 of 22) intron (NM_001005739, intron 9 of 22) 72170 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 979 chr7 35653538 35654088 + 3.5 NA intron (NM_022373, intron 5 of 8) L1MA4A|LINE|L1 41322 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 430-24 chr4 118095518 118095742 + 3.5 NA intron (NM_004784, intron 2 of 13) L1MB5|LINE|L1 61144 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 489.5-13 chr3 73114193 73114496 + 3.5 NA Intergenic Intergenic 52685 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 642.5-5 chr3 163224509 163224940 + 3.5 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 78577 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 448-11 chr15 91552849 91553040 + 3.5 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat 89605 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 536-9 chr2 212221313 212221607 + 3.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 204900 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 373-10 chr11 120092361 120092674 + 3.5 NA Intergenic L2a|LINE|L2 36336 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 635.5-6 chr17 63100963 63101260 + 3.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 134876 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 833-3 chr14 83631745 83632169 + 3.5 NA Intergenic Intergenic 989325 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 653.5-12 chr5 95917651 95918046 + 3.5 NA intron (NM_012081, intron 3 of 11) intron (NM_012081, intron 3 of 11) 44003 NM_012081 22936 Hs.192221 NM_012081 ENSG00000118985 ELL2 MRCCAT1 elongation factor for RNA polymerase II 2 protein-coding 575-5 chr16 56001853 56002117 + 3.5 NA Intergenic Intergenic -45954 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 785.5 chr10 52614656 52615036 + 3.5 NA intron (NR_155748, intron 1 of 2) L1MD|LINE|L1 140558 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 694-3 chr17 62082910 62083174 + 3.5 NA Intergenic Intergenic -17764 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 538.5 chr1 91702118 91702318 + 3.5 NA intron (NR_036634, intron 15 of 17) L2c|LINE|L2 183933 NR_036634 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 555-24 chr5 126238546 126238803 + 3.5 NA Intergenic Intergenic 46501 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 634-4 chr12 40978814 40979097 + 3.5 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 70598 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 811.5 chr1 239657179 239657487 + 3.5 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 28260 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1159.5 chr8 112800912 112801469 + 3.5 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 157697 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 1435.5 chr10 88269807 88270548 + 3.5 NA Intergenic Intergenic 313141 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 846-7 chr7 29031571 29032010 + 3.5 NA intron (NM_001371256, intron 15 of 16) L1ME4c|LINE|L1 51823 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 313-29 chr5 67408408 67408595 + 3.5 NA Intergenic Intergenic -211702 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 653-6 chr19 43978432 43978669 + 3.5 NA Intergenic Intergenic -5620 NM_001260486 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 547-16 chr5 22696863 22697069 + 3.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 156378 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 1014 chr17 58741337 58741816 + 3.5 NA Intergenic MER1A|DNA|hAT-Charlie -14278 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 568-15 chr7 83287733 83287965 + 3.5 NA Intergenic Intergenic -124965 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 562.5-19 chr3 43819702 43819896 + 3.5 NA Intergenic L1PREC2|LINE|L1 -128205 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 788.5-4 chr22 21036719 21037141 + 3.5 NA Intergenic MER34|LTR|ERV1 -2658 NR_030379 693234 NR_030379 ENSG00000207575 MIR649 MIRN649|hsa-mir-649 microRNA 649 ncRNA 382-34 chr3 192247492 192247628 + 3.5 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 8930 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 460.5-23 chr4 101940980 101941211 + 3.5 NA intron (NM_017935, intron 7 of 16) L1MC3|LINE|L1 127253 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 432.5-10 chr2 12804372 12804597 + 3.5 NA Intergenic Intergenic 67117 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 814.5-9 chrX 87803294 87803820 + 3.5 NA Intergenic Intergenic 285755 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 491-20 chr4 145277748 145277921 + 3.5 NA Intergenic AluSx3|SINE|Alu 62585 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 431.5-6 chr12 95792491 95792682 + 3.5 NA Intergenic U6|snRNA|snRNA -1431 NM_001329701 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 493.5-9 chr16 74320433 74320679 + 3.5 NA Intergenic AluJr|SINE|Alu 23742 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 690-11 chr20 59286122 59286420 + 3.5 NA Intergenic Intergenic -14340 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 311.5-34 chr5 6374132 6374259 + 3.5 NA intron (NM_032286, intron 3 of 3) intron (NM_032286, intron 3 of 3) 4352 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 704.5-8 chrX 100860447 100860870 + 3.5 NA intron (NM_001271815, intron 6 of 11) L1ME4b|LINE|L1 13687 NM_001271815 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 614-4 chr13 93142131 93142465 + 3.5 NA Intergenic L1M5|LINE|L1 -84509 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 489-22 chr5 119551 119745 + 3.5 NA intron (NM_052909, intron 2 of 19) intron (NM_052909, intron 2 of 19) 27480 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 493.5 chr1 114119974 114120322 + 3.5 NA intron (NM_001366223, intron 3 of 7) MIR|SINE|MIR 32292 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 929 chr14 52119100 52119411 + 3.5 NA Intergenic Intergenic -50196 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 375.5-2 chr1 238314330 238314538 + 3.5 NA Intergenic MLT2B2|LTR|ERVL 171583 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 446.5-22 chr6 37907210 37907441 + 3.5 NA intron (NM_021943, intron 1 of 5) L1ME1|LINE|L1 87598 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 607-20 chr3 146978734 146978998 + 3.5 NA Intergenic LTR33A_|LTR|ERVL 56943 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 448-34 chr9 2865417 2865690 + 3.5 NA Intergenic Intergenic -21458 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 375-28 chr6 62648073 62648210 + 3.5 NA Intergenic MER61E|LTR|ERV1 -361914 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 673.5-9 chr8 85990689 85991004 + 3.5 NA Intergenic Intergenic 78822 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 697-7 chr5 37926026 37926429 + 3.5 NA Intergenic MER74B|LTR|ERVL -22264 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 803-12 chr7 20009085 20009407 + 3.5 NA intron (NR_110114, intron 3 of 5) L1MB2|LINE|L1 131180 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 571.5-2 chr11 79688072 79688369 + 3.5 NA Intergenic Tigger8|DNA|TcMar-Tigger -247190 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 564.5-9 chr3 108272491 108272736 + 3.5 NA Intergenic Intergenic -23877 NM_001282558 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 495.5-13 chr3 188800988 188801182 + 3.5 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 112304 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 437-4 chr1 191610653 191610924 + 3.5 NA Intergenic Intergenic -382290 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 538-9 chr2 49774229 49774521 + 3.5 NA Intergenic L2a|LINE|L2 199828 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 357-25 chr3 80767581 80767752 + 3.5 NA intron (NR_147144, intron 1 of 2) intron (NR_147144, intron 1 of 2) 2769 NR_147143 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 739.5-2 chr19 28376142 28376616 + 3.5 NA Intergenic L1PA16|LINE|L1 -230309 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 591.5-8 chr8 118952724 118953077 + 3.5 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 637 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 648.5 chr1 41810905 41811157 + 3.5 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 107891 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 550-8 chr14 55217450 55217650 + 3.5 NA Intergenic L1ME3G|LINE|L1 -25965 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 331-24 chr17 63409061 63409188 + 3.5 NA intron (NM_025185, intron 20 of 25) intron (NM_025185, intron 20 of 25) 31143 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 554-15 chr20 48013050 48013244 + 3.5 NA Intergenic L2a|LINE|L2 -23030 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 364.5-25 chr9 30555896 30556009 + 3.5 NA Intergenic L1M5|LINE|L1 -147498 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 721-4 chr2 211465936 211466228 + 3.5 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 848511 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 834-2 chr2 68245635 68245901 + 3.5 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 6764 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 556.5-16 chr6 6784655 6784985 + 3.5 NA Intergenic AluJr|SINE|Alu -161994 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 558.5-13 chr6 23616703 23616967 + 3.5 NA Intergenic Intergenic -509380 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 570.5 chr1 53521792 53522111 + 3.5 NA intron (NM_147193, intron 5 of 9) MIRc|SINE|MIR 62552 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 418.5-28 chr7 112891608 112891765 + 3.5 NA intron (NM_152556, intron 3 of 4) Tigger1|DNA|TcMar-Tigger 48189 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 361-12 chr14 57300365 57300512 + 3.5 NA Intergenic Intergenic 31467 NM_018229 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 710.5 chr10 130216100 130216365 + 3.5 NA Intergenic Intergenic 79823 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 290-3 chr10 98650430 98650601 + 3.5 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) -203552 NM_001322477 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 528.5-2 chr1 113611492 113611724 + 3.5 NA intron (NM_001142782, intron 6 of 20) L2b|LINE|L2 147547 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 783.5-6 chr5 92444197 92444561 + 3.5 NA Intergenic MamSINE1|SINE|tRNA-RTE -1061062 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1248 chr3 118217289 118217716 + 3.5 NA Intergenic L1MA6|LINE|L1 -424266 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 692-9 chr4 174341369 174341671 + 3.5 NA Intergenic Intergenic -57269 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 632.5-3 chr2 133523872 133524065 + 3.5 NA intron (NM_207481, intron 2 of 17) MER5B|DNA|hAT-Charlie 44495 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 532-5 chr14 75770742 75771015 + 3.5 NA intron (NM_015072, intron 20 of 31) intron (NM_015072, intron 20 of 31) 109632 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 610.5-15 chr7 37924458 37924798 + 3.5 NA intron (NM_001242948, intron 1 of 2) MamRep605|LTR?|LTR? 3309 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 725-4 chr15 47909031 47909253 + 3.5 NA Intergenic Intergenic -62906 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 497-2 chr1 221225190 221225387 + 3.5 NA Intergenic L1MA8|LINE|L1 111008 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 406 chr1 247833948 247834096 + 3.5 NA Intergenic Intergenic 7874 NM_001001959 391189 Hs.553781 NM_001001959 ENSG00000197591 OR11L1 - olfactory receptor family 11 subfamily L member 1 protein-coding 374-6 chr11 8792253 8792379 + 3.5 NA intron (NR_120590, intron 4 of 4) L1M4|LINE|L1 18358 NM_213618 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 687.5 chr10 93613921 93614181 + 3.5 NA intron (NM_006204, intron 1 of 21) L1ME4a|LINE|L1 1514 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 829-6 chr7 81368699 81368982 + 3.5 NA Intergenic MLT2B3|LTR|ERVL 192979 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 581-3 chr10 60146742 60146927 + 3.5 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -5818 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 796-3 chr17 41672931 41673302 + 3.5 NA Intergenic MER41B|LTR|ERV1 -15769 NM_005801 10209 Hs.150580 NM_005801 ENSG00000173812 EIF1 A121|EIF-1|EIF1A|ISO1|SUI1 eukaryotic translation initiation factor 1 protein-coding 878-2 chr17 76362608 76363012 + 3.5 NA Intergenic AluSq|SINE|Alu -8612 NM_001366236 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 797.5 chr11 107505225 107505507 + 3.5 NA intron (NM_138775, intron 11 of 11) intron (NM_138775, intron 11 of 11) -47520 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 533-11 chr14 60285201 60285376 + 3.5 NA intron (NM_021003, intron 2 of 5) intron (NM_021003, intron 2 of 5) 36067 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 716-7 chr8 121069378 121069867 + 3.5 NA Intergenic LTR8B|LTR|ERV1 -257576 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 750-12 chr5 138003931 138004311 + 3.5 NA intron (NM_001101801, intron 6 of 21) AluSx|SINE|Alu -28653 NR_037900 100130172 Hs.616629 NR_037900 LOC100130172 - uncharacterized LOC100130172 ncRNA 602-3 chr1 104226811 104227237 + 3.5 NA Intergenic Intergenic 154001 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 824.5 chr13 44372682 44373011 + 3.5 NA promoter-TSS (NM_001346980) promoter-TSS (NM_001346980) -804 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 538.5-8 chr16 78715901 78716223 + 3.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 616408 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 649-4 chr14 42872348 42872646 + 3.5 NA Intergenic L1M4|LINE|L1 1265641 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 789 chr1 205088581 205088910 + 3.5 NA 3' UTR (NM_005057, exon 14 of 14) 3' UTR (NM_005057, exon 14 of 14) -4285 NM_203376 388730 Hs.146928 NM_203376 ENSG00000174529 TMEM81 HC3107|KVLA2788|UNQ2788 transmembrane protein 81 protein-coding 647-5 chr12 48608547 48608780 + 3.5 NA Intergenic L1MEc|LINE|L1 -38617 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 532.5-12 chr4 46337214 46337394 + 3.5 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 52075 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 700.5 chr2 166724986 166725263 + 3.5 NA Intergenic Intergenic -163363 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 1030 chr6 156986341 156986868 + 3.5 NA intron (NM_020732, intron 5 of 19) MIR|SINE|MIR -49823 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 250-16 chr17 54724861 54724968 + 3.5 NA Intergenic Intergenic -175777 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 506-17 chr21 28877934 28878197 + 3.5 NA intron (NM_013240, intron 5 of 5) intron (NM_013240, intron 5 of 5) 7302 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 618.5-8 chr5 153645649 153645974 + 3.5 NA intron (NM_001258020, intron 3 of 16) MIRb|SINE|MIR 153639 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 457-5 chr15 77969375 77969529 + 3.5 NA Intergenic AluJb|SINE|Alu 24773 NR_026998 91450 Hs.406766 NR_026998 LOC91450 - uncharacterized LOC91450 ncRNA 462-12 chr11 115425829 115426071 + 3.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 29194 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 739-6 chr4 84591800 84592075 + 3.5 NA intron (NM_001263, intron 1 of 12) intron (NM_001263, intron 1 of 12) 8810 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 518.5-11 chr19 1058414 1058672 + 3.5 NA intron (NM_019112, intron 37 of 46) intron (NM_019112, intron 37 of 46) -7416 NM_001258328 23526 Hs.465521 NM_012292 ENSG00000180448 ARHGAP45 HA-1|HLA-HA1|HMHA1 Rho GTPase activating protein 45 protein-coding 675.5-8 chr3 138682562 138682941 + 3.5 NA intron (NM_006219, intron 18 of 23) MIRb|SINE|MIR 24870 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 906.5-2 chr3 112334390 112334776 + 3.5 NA intron (NM_001318828, intron 1 of 4) MIRb|SINE|MIR 1427 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 795.5-3 chr14 51914537 51915021 + 3.5 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 3792 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 524-6 chr17 38882647 38882943 + 3.5 NA intron (NM_001271608, intron 2 of 5) intron (NM_001271608, intron 2 of 5) 12737 NM_006148 3927 Hs.741156 NM_006148 ENSG00000002834 LASP1 Lasp-1|MLN50 LIM and SH3 protein 1 protein-coding 678.5-2 chr12 40062802 40063094 + 3.5 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 43133 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 825.5-3 chr2 190421872 190422219 + 3.5 NA intron (NM_017694, intron 2 of 7) HAL1|LINE|L1 13690 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 459-7 chr15 59193247 59193400 + 3.5 NA intron (NM_004998, intron 17 of 27) (TGAT)n|Simple_repeat|Simple_repeat -13520 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 661.5 chr10 71766989 71767193 + 3.5 NA intron (NM_022153, intron 1 of 6) intron (NM_022153, intron 1 of 6) 6429 NM_022153 64115 Hs.47382 NM_022153 ENSG00000107738 VSIR B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA V-set immunoregulatory receptor protein-coding 857-5 chr2 63266185 63266530 + 3.5 NA intron (NR_148704, intron 14 of 18) L1MA7|LINE|L1 -146815 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 525-22 chr6 36271225 36271392 + 3.5 NA intron (NM_001145717, intron 1 of 7) intron (NM_001145717, intron 1 of 7) 848 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 619.5 chr10 56577660 56578252 + 3.5 NA Intergenic Intergenic -216683 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 594.5-7 chr5 35214884 35215135 + 3.5 NA intron (NM_000949, intron 1 of 9) MER87|LTR|ERV1 15478 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 528.5-16 chr7 127783872 127784143 + 3.5 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 131813 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 803-13 chr8 133280065 133280510 + 3.5 NA intron (NM_001135242, intron 2 of 15) intron (NM_001135242, intron 2 of 15) 16965 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 458-13 chr16 23617089 23617309 + 3.5 NA intron (NM_024675, intron 10 of 12) intron (NM_024675, intron 10 of 12) -20883 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 619 chr1 47868014 47868239 + 3.5 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 129259 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 292-2 chr1 184278559 184278697 + 3.5 NA Intergenic L1MB1|LINE|L1 -108401 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 647.5-7 chr3 12445808 12446101 + 3.5 NA Intergenic LTR16C|LTR|ERVL -38478 NM_001321277 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 545-5 chr10 48737878 48738053 + 3.5 NA intron (NM_020945, intron 11 of 61) MIR3|SINE|MIR 52502 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 364-32 chr6 23873088 23873280 + 3.5 NA Intergenic Intergenic -253031 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 270.5-13 chr19 13020454 13020610 + 3.5 NA intron (NM_001365902, intron 1 of 10) intron (NM_001365902, intron 1 of 10) -3440 NM_001271044 4784 Hs.257970 NM_002501 ENSG00000008441 NFIX CTF|MRSHSS|NF-I/X|NF1-X|NF1A|SOTOS2 nuclear factor I X protein-coding 875.5-3 chr8 123390931 123391411 + 3.5 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 5276 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 443.5-3 chr11 79291194 79291459 + 3.5 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 110783 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 311.5-30 chr3 42495659 42495777 + 3.5 NA intron (NM_001251882, intron 1 of 13) MLT1E1A|LTR|ERVL-MaLR 6419 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 653-13 chr8 137207086 137207356 + 3.5 NA Intergenic AluSq2|SINE|Alu 206367 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 453.5-14 chr4 70670694 70670877 + 3.5 NA Intergenic Intergenic -4277 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 707-5 chr16 61358306 61358653 + 3.5 NA Intergenic L1MC1|LINE|L1 -302713 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 456.5 chr1 40202053 40202205 + 3.5 NA intron (NM_012421, intron 4 of 7) MIRb|SINE|MIR 40742 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 484.5-25 chr8 114692872 114693039 + 3.5 NA Intergenic Intergenic 975058 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 397-9 chr14 55828590 55828795 + 3.5 NA Intergenic Intergenic -32018 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 682-14 chr4 107436500 107436837 + 3.5 NA Intergenic L1PA17|LINE|L1 283566 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 808.5-3 chr4 64754583 64754960 + 3.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR 249729 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 568-8 chr3 55582720 55582943 + 3.5 NA intron (NM_015576, intron 16 of 16) MIRb|SINE|MIR 76638 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 519-5 chr10 103236672 103236949 + 3.5 NA Intergenic Intergenic -9077 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 760-7 chr5 24338305 24338700 + 3.5 NA Intergenic Intergenic 306476 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 652.5 chr13 23171827 23172102 + 3.5 NA Intergenic Intergenic -8957 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 410-11 chr18 6467071 6467279 + 3.5 NA Intergenic L1MB2|LINE|L1 -44241 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 743.5-3 chr7 31989725 31990193 + 3.5 NA intron (NM_001322059, intron 3 of 17) L2b|LINE|L2 80448 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 446-14 chr14 53410013 53410192 + 3.5 NA Intergenic Intergenic 256748 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 603-13 chr9 94574715 94574902 + 3.5 NA intron (NM_003837, intron 3 of 6) L1M5|LINE|L1 19016 NM_003837 8789 Hs.61255 NM_003837 ENSG00000130957 FBP2 - fructose-bisphosphatase 2 protein-coding 1100.5 chr10 122874158 122874592 + 3.5 NA intron (NM_152644, intron 1 of 3) L1MC2|LINE|L1 5206 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 838.5-6 chr5 19638040 19638363 + 3.5 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 248071 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 750-15 chrX 94077853 94078157 + 3.5 NA Intergenic L1MA4|LINE|L1 403799 NM_001171110 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 448.5-6 chr12 57132276 57132480 + 3.5 NA intron (NM_002332, intron 1 of 88) intron (NM_002332, intron 1 of 88) 3895 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 510-3 chr10 105364153 105364322 + 3.5 NA Intergenic L1MA8|LINE|L1 456096 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 456-34 chr8 83348726 83348915 + 3.5 NA Intergenic LTR16A|LTR|ERVL -54938 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 383-38 chr8 124522903 124523063 + 3.5 NA non-coding (NR_027427, exon 2 of 13) non-coding (NR_027427, exon 2 of 13) -14407 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 919.5 chr5 52005811 52006300 + 3.5 NA Intergenic Intergenic -1976 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 199-14 chr3 60467179 60467282 + 3.5 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 150640 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 575.5-9 chr5 76901294 76901498 + 3.5 NA intron (NM_130772, intron 4 of 4) L1MA1|LINE|L1 51382 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 620.5-7 chr6 49959310 49959712 + 3.5 NA TTS (NM_001037499) TTS (NM_001037499) 4653 NM_001037499 245928 Hs.381372 NM_001037499 ENSG00000177684 DEFB114 DEFB-14|DEFB14 defensin beta 114 protein-coding 382.5-10 chr17 9320402 9320536 + 3.5 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -141351 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 577.5-9 chr14 38224430 38224822 + 3.5 NA Intergenic MER57A-int|LTR|ERV1 16722 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 575-9 chr4 5037878 5038160 + 3.5 NA Intergenic Intergenic -13461 NM_001306082 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 610.5 chr1 24386127 24386399 + 3.5 NA intron (NM_178122, intron 2 of 7) intron (NM_178122, intron 2 of 7) -27224 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 592.5-12 chr4 54507499 54507727 + 3.5 NA Intergenic Intergenic 99518 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 558-11 chr3 55846789 55847014 + 3.5 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 5693 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 483-35 chr7 94480977 94481235 + 3.5 NA Intergenic Intergenic -28703 NM_001363427 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 475-18 chr2 104225775 104225987 + 3.5 NA Intergenic Intergenic 182451 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 369.5-14 chr2 64581863 64582000 + 3.5 NA intron (NM_203437, intron 8 of 9) intron (NM_203437, intron 8 of 9) -25381 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 479.5-4 chr2 145314222 145314484 + 3.5 NA Intergenic Intergenic 646386 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 976 chr16 75008698 75009062 + 3.5 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 9856 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 908.5-2 chr3 147876004 147876424 + 3.5 NA Intergenic Intergenic -201945 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 458-26 chr6 75111376 75111653 + 3.5 NA intron (NM_080645, intron 36 of 50) intron (NM_080645, intron 36 of 50) 17268 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 225-35 chr8 103762300 103762373 + 3.5 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -56884 NM_001348504 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 882.5-3 chr4 179592648 179593022 + 3.5 NA Intergenic L1MEf|LINE|L1 1566314 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 578.5-12 chr6 87491099 87491475 + 3.5 NA intron (NM_001168398, intron 2 of 6) Tigger4a|DNA|TcMar-Tigger 18313 NM_006416 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 574-8 chr19 42303732 42303958 + 3.5 NA intron (NM_199285, intron 1 of 2) intron (NM_199285, intron 1 of 2) -1045 NM_001145940 5050 Hs.466831 NM_002573 ENSG00000079462 PAFAH1B3 PAFAHG platelet activating factor acetylhydrolase 1b catalytic subunit 3 protein-coding 650-16 chr9 31203025 31203326 + 3.5 NA Intergenic Intergenic 178315 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 540.5-10 chr8 89909737 89909951 + 3.5 NA intron (NM_001126111, intron 2 of 5) intron (NM_001126111, intron 2 of 5) 7274 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 641-8 chr3 131725181 131725586 + 3.5 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) -222412 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 632-12 chr7 31477236 31477462 + 3.5 NA Intergenic Intergenic -36722 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 500-3 chr10 77933123 77933315 + 3.5 NA Intergenic L2c|LINE|L2 6407 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 725.5-2 chr1 220986824 220987148 + 3.5 NA Intergenic Intergenic -106846 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 592.5-7 chr2 183856739 183857111 + 3.5 NA Intergenic L1PB1|LINE|L1 -522050 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 904-3 chr17 58834054 58834468 + 3.5 NA intron (NM_014906, intron 1 of 6) L1MD2|LINE|L1 78392 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 739.5-3 chr6 18522059 18522404 + 3.5 NA promoter-TSS (NR_149116) promoter-TSS (NR_149116) -516 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 513-9 chr14 87007328 87007588 + 3.5 NA Intergenic MSTB2|LTR|ERVL-MaLR 101680 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 666 chr1 42276824 42277036 + 3.5 NA intron (NM_001198850, intron 3 of 12) FLAM_C|SINE|Alu 58025 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 503.5-18 chr9 37484000 37484172 + 3.5 NA Intergenic (TCTTCTT)n|Simple_repeat|Simple_repeat -1849 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 398.5-8 chr17 51298205 51298460 + 3.5 NA TTS (NM_016001) TTS (NM_016001) 36830 NR_110751 101927274 Hs.591168 NR_110751 ENSG00000249383 LINC02071 - long intergenic non-protein coding RNA 2071 ncRNA 785.5-4 chr2 52036692 52037142 + 3.5 NA intron (NR_135237, intron 7 of 10) MER4D1|LTR|ERV1 -333731 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 513-35 chr9 112005902 112006123 + 3.5 NA Intergenic Intergenic 73912 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 541-13 chr3 29594040 29594328 + 3.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 312872 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 981 chr2 47482781 47483302 + 3.5 NA 3' UTR (NM_001258281, exon 17 of 17) 3' UTR (NM_001258281, exon 17 of 17) -44496 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 551-15 chr18 45347733 45348048 + 3.5 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 134895 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 548-16 chr4 94776742 94777177 + 3.5 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 19004 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 891.5-3 chr2 196999903 197000372 + 3.5 NA intron (NM_001367496, intron 23 of 27) L1ME4b|LINE|L1 -73430 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 848-2 chr2 14469379 14470088 + 3.5 NA Intergenic L1MA8|LINE|L1 -68775 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 859 chr10 86604116 86604639 + 3.5 NA Intergenic L1MEg|LINE|L1 -50170 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 642.5-8 chr7 16009459 16009804 + 3.5 NA Intergenic Intergenic -200855 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 544-15 chr8 50333168 50333336 + 3.5 NA intron (NR_135797, intron 2 of 20) MIR|SINE|MIR 169121 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 701.5-2 chr16 5789950 5790200 + 3.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 157608 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 975 chr11 74516677 74517073 + 3.5 NA Intergenic L1MA2|LINE|L1 -23151 NM_001329941 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 852-3 chr15 49217700 49218541 + 3.5 NA intron (NM_001289030, intron 4 of 10) intron (NM_001289030, intron 4 of 10) 47873 NM_002044 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 360-28 chr22 27979610 27979726 + 3.5 NA 3' UTR (NM_001145418, exon 23 of 23) 3' UTR (NM_001145418, exon 23 of 23) -59056 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 492.5-13 chr20 10984421 10984600 + 3.5 NA Intergenic MER5A|DNA|hAT-Charlie -42034 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 525-14 chr20 32178234 32178413 + 3.5 NA Intergenic L1MB3|LINE|L1 12037 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 849-3 chr4 39460961 39461363 + 3.5 NA intron (NM_001278592, intron 2 of 2) intron (NM_001278592, intron 2 of 2) 2106 NM_001278590 11019 Hs.550502 NM_006859 ENSG00000121897 LIAS HGCLAS|HUSSY-01|LAS|LIP1|LS|PDHLD lipoic acid synthetase protein-coding 860.5 chr5 52297385 52297871 + 3.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 289597 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 503-10 chr17 75288232 75288499 + 3.5 NA intron (NM_001126122, intron 1 of 6) L2b|LINE|L2 1068 NM_001126121 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 643.5 chr1 203935874 203936062 + 3.5 NA Intergenic Intergenic 74121 NM_001328637 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 556.5-22 chr8 141895898 141896207 + 3.5 NA Intergenic L1MD2|LINE|L1 -109739 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 399.5-14 chr22 26693536 26693750 + 3.5 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 20800 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 390-24 chr4 120026345 120026542 + 3.5 NA Intergenic L1MC4|LINE|L1 40405 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 765.5-2 chr13 71806954 71807320 + 3.5 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 60055 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 401.5-29 chr7 3672463 3672665 + 3.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 371312 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 556.5-11 chr4 41302467 41302715 + 3.5 NA Intergenic L1PA17|LINE|L1 45663 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 762.5-4 chr4 144561912 144562301 + 3.5 NA Intergenic Intergenic 83913 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 542.5-23 chr5 15236450 15236739 + 3.5 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 29966 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 481-17 chr5 75455865 75456101 + 3.5 NA intron (NM_031361, intron 3 of 16) MIRb|SINE|MIR 55646 NM_005713 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 766.5 chr1 75458400 75458644 + 3.5 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 152592 NM_001320287 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 456-13 chr18 2524112 2524329 + 3.5 NA Intergenic L1MEc|LINE|L1 47285 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 581-5 chr14 46141675 46141906 + 3.5 NA intron (NR_102702, intron 1 of 3) ERVL-E-int|LTR|ERVL 77631 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 510-20 chr7 77739967 77740242 + 3.5 NA intron (NM_198467, intron 2 of 7) intron (NM_198467, intron 2 of 7) -42759 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 306.5-11 chr12 38734155 38734332 + 3.5 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 171348 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 282-25 chr8 55828134 55828217 + 3.5 NA Intergenic Intergenic -51660 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 369-13 chr11 96688791 96688917 + 3.5 NA Intergenic Intergenic 180429 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 377-4 chr10 107194764 107194980 + 3.5 NA Intergenic LTR50|LTR|ERVL -30166 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 751.5-2 chr2 17697769 17698168 + 3.5 NA intron (NM_024624, intron 20 of 26) L1MB7|LINE|L1 55842 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 394.5 chr1 6078931 6079149 + 3.5 NA intron (NM_001199863, intron 3 of 13) L2|LINE|L2 33152 NM_001199862 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 547.5-15 chr8 12859689 12859986 + 3.5 NA Intergenic Intergenic -48359 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 1182.5 chr20 58453879 58454283 + 3.5 NA Intergenic HAL1|LINE|L1 60857 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 534-14 chr2 45174542 45174877 + 3.5 NA intron (NR_033831, intron 5 of 5) MER2|DNA|TcMar-Tigger 80232 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 502 chr1 98399913 98400080 + 3.5 NA Intergenic Intergenic 189285 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 650.5-12 chr4 30530966 30531228 + 3.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -189272 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 753.5-2 chr11 82642036 82642438 + 3.5 NA Intergenic MSTA|LTR|ERVL-MaLR 91627 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 638.5-10 chr6 143823000 143823418 + 3.5 NA intron (NM_001100165, intron 11 of 11) L2a|LINE|L2 -20064 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 562.5-22 chr5 19637071 19637344 + 3.5 NA intron (NM_001349562, intron 5 of 13) L1MA8|LINE|L1 249065 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 479-20 chr5 32490314 32490511 + 3.5 NA Intergenic Intergenic -45672 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 677.5-7 chr8 86933754 86934098 + 3.5 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 67511 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 736-12 chr7 88849358 88849847 + 3.5 NA intron (NM_181646, intron 1 of 3) AluSx1|SINE|Alu -53865 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 766.5-6 chr3 72322798 72323233 + 3.5 NA Intergenic Intergenic 123608 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 772.5-6 chr6 17818076 17818409 + 3.5 NA intron (NM_001105567, intron 16 of 36) intron (NM_001105567, intron 16 of 36) 111199 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 250-42 chrX 117387102 117387198 + 3.5 NA Intergenic Intergenic -569290 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 397-5 chr10 122394664 122394805 + 3.5 NA intron (NM_001330178, intron 3 of 13) intron (NM_001330178, intron 3 of 13) 2431 NM_021622 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 771.5-3 chr5 66353992 66354466 + 3.5 NA Intergenic MER21C|LTR|ERVL -144783 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 822 chr1 63440411 63440880 + 3.5 NA TTS (NM_001206739) TTS (NM_001206739) 73018 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 359.5-16 chr16 30458179 30458344 + 3.5 NA Intergenic Intergenic -12387 NM_012248 22928 Hs.118725 NM_012248 ENSG00000179918 SEPHS2 SPS2 selenophosphate synthetase 2 protein-coding 701.5-3 chr4 106963177 106963533 + 3.5 NA intron (NM_014421, intron 1 of 3) AluSg|SINE|Alu 72958 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 561-3 chr1 186543462 186543800 + 3.5 NA Intergenic L1M2|LINE|L1 -82517 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 657 chr14 22043235 22043774 + 3.5 NA Intergenic L1ME3|LINE|L1 -372487 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 485.5-21 chr7 16035532 16035776 + 3.5 NA Intergenic L2a|LINE|L2 -174832 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 485.5-14 chr5 9156909 9157244 + 3.5 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -103181 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 781.5-9 chr9 95820051 95820445 + 3.5 NA intron (NR_023390, intron 2 of 2) L1ME1|LINE|L1 -55443 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 696-4 chr15 48492237 48492586 + 3.5 NA intron (NM_000138, intron 24 of 65) intron (NM_000138, intron 24 of 65) 153377 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 906 chr1 102407635 102408071 + 3.5 NA Intergenic Intergenic -410619 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 651.5-7 chr5 53400124 53400346 + 3.5 NA Intergenic LTR16A1|LTR|ERVL -80394 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 656.5-3 chr16 76748931 76749293 + 3.5 NA Intergenic L1M4|LINE|L1 114114 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 501.5-12 chr2 10071338 10071577 + 3.5 NA intron (NM_001037160, intron 1 of 2) intron (NM_001037160, intron 1 of 2) 8954 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 653.5-8 chr20 47562003 47562308 + 3.5 NA intron (NM_181659, intron 1 of 22) L1MC1|LINE|L1 60268 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 647-3 chr10 46543119 46543459 + 3.5 NA TTS (NM_014696) TTS (NM_014696) 12782 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 593.5-3 chr16 53798158 53798352 + 3.5 NA intron (NM_001363897, intron 1 of 7) L1MEc|LINE|L1 94099 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 549.5-12 chr7 99109902 99110134 + 3.5 NA intron (NM_020429, intron 1 of 18) L1M5|LINE|L1 34090 NM_181349 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 448-22 chr2 214951185 214951332 + 3.5 NA intron (NR_103740, intron 46 of 54) intron (NR_103740, intron 46 of 54) 80828 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 546-3 chr14 49379118 49379299 + 3.5 NA Intergenic AluSx1|SINE|Alu 207172 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 770-4 chr18 8560328 8560659 + 3.5 NA Intergenic Charlie25|DNA|hAT-Charlie -48952 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 558-5 chr16 9519892 9520251 + 3.5 NA Intergenic L1MD2|LINE|L1 -64566 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 983.5-2 chr8 101055398 101055731 + 3.5 NA intron (NR_033962, intron 2 of 2) L1ME3F|LINE|L1 3510 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 447.5-11 chr2 123067050 123067220 + 3.5 NA intron (NR_147208, intron 2 of 2) intron (NR_147208, intron 2 of 2) 6346 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1025.5 chr6 51426628 51427044 + 3.5 NA Intergenic Intergenic -195034 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 779-4 chr5 31393424 31393974 + 3.5 NA Intergenic Intergenic 138394 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 456.5-3 chr1 244156443 244156573 + 3.5 NA Intergenic Intergenic 103303 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 284-33 chr6 64847805 64847896 + 3.5 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -453568 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 559-20 chr7 87595361 87595663 + 3.5 NA intron (NM_001348944, intron 5 of 29) intron (NM_001348944, intron 5 of 29) 5372 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 294-39 chr8 88301549 88301702 + 3.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 25858 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 708 chr13 87958720 87958942 + 3.5 NA Intergenic L1MB7|LINE|L1 -148311 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 482.5-13 chr3 171973785 171974139 + 3.5 NA Intergenic Intergenic -65616 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 825.5-4 chr5 144976605 144976980 + 3.5 NA Intergenic Intergenic 771401 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 828.5-4 chr2 11281683 11282147 + 3.5 NA intron (NM_001321643, intron 3 of 32) L1MC1|LINE|L1 62721 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 834 chr1 181951217 181951563 + 3.5 NA Intergenic L1M6|LINE|L1 110322 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 398.5-4 chr10 34629272 34629510 + 3.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 185905 NM_001184785 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 357-17 chr17 35153368 35153489 + 3.5 NA intron (NM_001033576, intron 5 of 19) intron (NM_001033576, intron 5 of 19) 5164 NM_173167 146862 Hs.379636 NM_173167 ENSG00000141161 UNC45B CMYA4|CTRCT43|SMUNC45|UNC-45B|UNC45 unc-45 myosin chaperone B protein-coding 483.5-11 chr4 76083305 76083558 + 3.5 NA intron (NM_001130017, intron 3 of 9) intron (NM_001130017, intron 3 of 9) 8736 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 478-18 chr2 156949550 156949773 + 3.5 NA Intergenic Intergenic -308044 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 411.5-25 chr6 110182465 110182610 + 3.5 NA intron (NM_015891, intron 1 of 14) L2c|LINE|L2 2110 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 535.5-16 chr7 107742435 107742663 + 3.5 NA TTS (NR_144536) TTS (NR_144536) 1083 NR_144536 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 353-11 chr14 98051557 98051811 + 3.5 NA Intergenic L1MEc|LINE|L1 -73560 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 975-3 chr14 104776310 104776716 + 3.5 NA intron (NM_001014431, intron 4 of 13) intron (NM_001014431, intron 4 of 13) 17088 NM_005163 207 Hs.525622 NM_005163 ENSG00000142208 AKT1 AKT|CWS6|PKB|PKB-ALPHA|PRKBA|RAC|RAC-ALPHA AKT serine/threonine kinase 1 protein-coding 775-3 chr2 71638846 71639182 + 3.5 NA intron (NM_001130987, intron 41 of 55) L1MB7|LINE|L1 172315 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 389.5-29 chr9 98394134 98394292 + 3.5 NA exon (NM_005458, exon 9 of 19) exon (NM_005458, exon 9 of 19) -138564 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 674-2 chr2 84723410 84723643 + 3.5 NA intron (NM_001370, intron 60 of 76) intron (NM_001370, intron 60 of 76) 157558 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 490-12 chr2 5813479 5813768 + 3.5 NA Intergenic Intergenic -1027 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 309.5-12 chr14 85875260 85875350 + 3.5 NA Intergenic Intergenic -59373 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 574.5-12 chr4 55555765 55555992 + 3.5 NA TTS (NM_152401) TTS (NM_152401) -8969 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 623.5-3 chr3 22664301 22664689 + 3.5 NA Intergenic Intergenic 538083 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 497-20 chr9 71511463 71511712 + 3.5 NA Intergenic L1MA8|LINE|L1 -64616 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 412-10 chr12 112762483 112762700 + 3.5 NA intron (NM_001347952, intron 1 of 21) MLT1K|LTR|ERVL-MaLR -28947 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 552-19 chr5 147632329 147632597 + 3.5 NA intron (NM_001282282, intron 12 of 20) MIRb|SINE|MIR 72469 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 617.5-2 chr1 242711159 242711420 + 3.5 NA Intergenic Intergenic -186592 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 918-2 chr1 200910347 200910755 + 3.5 NA intron (NM_001367290, intron 8 of 9) intron (NM_001367290, intron 8 of 9) 15651 NM_001142569 55765 Hs.518997 NM_018265 ENSG00000163362 INAVA C1orf106 innate immunity activator protein-coding 429-18 chr2 44969061 44969274 + 3.5 NA Intergenic L2a|LINE|L2 -27289 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 436 chr1 55329930 55330120 + 3.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger 104384 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 673-5 chr5 99749451 99749854 + 3.5 NA Intergenic Intergenic 215662 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 384.5-4 chr1 235201018 235201196 + 3.5 NA intron (NM_031371, intron 16 of 22) AluSx3|SINE|Alu -10991 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 758-6 chr5 150102753 150103076 + 3.5 NA intron (NM_005211, intron 1 of 21) L1MC|LINE|L1 -10290 NM_001349736 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 458-29 chr7 25302767 25303036 + 3.5 NA Intergenic MIR|SINE|MIR -74415 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 629-9 chr3 7388934 7389222 + 3.5 NA intron (NM_000844, intron 4 of 9) L1PA17|LINE|L1 146206 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 561-22 chr6 42512686 42512934 + 3.5 NA Intergenic LTR65|LTR|ERV1 -51212 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 548.5-7 chr18 65474913 65475129 + 3.5 NA Intergenic Intergenic -275231 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 746-3 chr2 41340622 41340941 + 3.5 NA Intergenic Intergenic -536774 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 615.5-5 chr20 31830376 31830739 + 3.5 NA intron (NM_033118, intron 8 of 12) intron (NM_033118, intron 8 of 12) 11182 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 653-12 chr8 123488725 123488960 + 3.5 NA Intergenic AluJr|SINE|Alu 43301 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 859-4 chr4 142109060 142109341 + 3.5 NA intron (NM_001331040, intron 22 of 25) intron (NM_001331040, intron 22 of 25) 472617 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 408.5-6 chr12 58495841 58496041 + 3.5 NA Intergenic Intergenic -95761 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 384-6 chr12 40077210 40077381 + 3.5 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 28786 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 273.5-16 chr2 196442601 196442706 + 3.5 NA intron (NM_001348768, intron 1 of 28) L1ME4a|LINE|L1 -80476 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 919-3 chr17 34314809 34315220 + 3.5 NA Intergenic Intergenic -4421 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 786-8 chr5 94422884 94423147 + 3.5 NA intron (NM_001145678, intron 14 of 20) LTR79|LTR|ERVL 195589 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 472-6 chr17 59317120 59317352 + 3.5 NA Intergenic AluSx1|SINE|Alu -14419 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 587.5-8 chr15 64248387 64248624 + 3.5 NA intron (NM_001329607, intron 4 of 11) L2c|LINE|L2 -85350 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 617.5-5 chr11 22367127 22367411 + 3.5 NA intron (NM_020346, intron 7 of 11) intron (NM_020346, intron 7 of 11) 28888 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 625-3 chr11 22161702 22161956 + 3.5 NA Intergenic Intergenic -31256 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 483-27 chr6 14468478 14468659 + 3.5 NA Intergenic LTR81B|LTR|Gypsy -183114 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 467.5-12 chr3 7665561 7665891 + 3.5 NA intron (NM_000844, intron 8 of 9) MIRc|SINE|MIR -130442 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 411-36 chr7 40938363 40938581 + 3.5 NA Intergenic L1MB7|LINE|L1 41467 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 856 chr1 100992293 100992899 + 3.5 NA intron (NM_001077394, intron 7 of 7) intron (NM_001077394, intron 7 of 7) 33188 NM_001077395 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 483.5-7 chr20 20478067 20478237 + 3.5 NA intron (NM_020343, intron 36 of 39) L1M5|LINE|L1 110048 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 590-16 chr9 33148313 33148613 + 3.5 NA intron (NM_001497, intron 1 of 5) L1ME5|LINE|L1 -18485 NR_108109 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 745.5-2 chr1 163896842 163897235 + 3.5 NA Intergenic Intergenic -473847 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 735-6 chr3 29541413 29541652 + 3.5 NA intron (NM_001003792, intron 3 of 13) L2a|LINE|L2 260220 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 581-8 chr2 155085601 155085831 + 3.5 NA Intergenic L1PA15|LINE|L1 387021 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 675.5 chr1 48603548 48603944 + 3.5 NA intron (NM_001323575, intron 9 of 12) L2c|LINE|L2 -131538 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 891.5-2 chr17 75550072 75550444 + 3.5 NA intron (NM_001015002, intron 2 of 9) intron (NM_001015002, intron 2 of 9) 24556 NM_001015002 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL scribble cell polarity complex component 2 protein-coding 667-6 chrX 141978102 141978328 + 3.5 NA Intergenic L1PB1|LINE|L1 74321 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 650.5-11 chr3 88514367 88514634 + 3.5 NA Intergenic Intergenic 176044 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 525.5-13 chr5 45992966 45993389 + 3.5 NA Intergenic ALR/Alpha|Satellite|centr -296797 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 621-8 chr2 102738886 102739264 + 3.5 NA intron (NM_001321346, intron 1 of 3) ERVL-E-int|LTR|ERVL 2140 NM_001321343 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 622.5-3 chr16 81794622 81795051 + 3.5 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 15545 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 587.5-16 chr3 189658468 189658733 + 3.5 NA intron (NM_003722, intron 1 of 13) L1MC3|LINE|L1 27211 NM_001114979 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 624.5-12 chr5 54278353 54278605 + 3.5 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 32094 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 535-8 chr15 33876098 33876315 + 3.5 NA intron (NM_020371, intron 2 of 5) intron (NM_020371, intron 2 of 5) -92291 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 804-11 chrX 155261421 155261978 + 3.5 NA intron (NM_171998, intron 1 of 1) MIRc|SINE|MIR 2792 NM_171998 116442 Hs.632832 NM_171998 ENSG00000155961 RAB39B BGMR|MRX72|WSMN|WSN RAB39B, member RAS oncogene family protein-coding 435.5-18 chr7 96360799 96361000 + 3.5 NA Intergenic L1ME4b|LINE|L1 -38752 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 855 chr14 63210483 63210964 + 3.5 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 6280 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 466.5-18 chr5 37109022 37109216 + 3.5 NA intron (NM_023073, intron 50 of 51) intron (NM_023073, intron 50 of 51) -139927 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 687.5-9 chr8 127462167 127462575 + 3.5 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 19768 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 359-15 chr14 88664437 88664575 + 3.5 NA exon (NM_183387, exon 23 of 43) exon (NM_183387, exon 23 of 43) 70086 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 588-19 chr2 49033499 49033776 + 3.5 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -25966 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 527.5-7 chr2 112650896 112651089 + 3.5 NA intron (NM_005415, intron 4 of 10) intron (NM_005415, intron 4 of 10) 5053 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 551-11 chr12 39031768 39031970 + 3.5 NA Intergenic Intergenic -126278 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 441-11 chr14 72321473 72321675 + 3.5 NA intron (NM_001370288, intron 2 of 16) L1M7|LINE|L1 -195246 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 624.5-7 chr17 73654473 73654832 + 3.5 NA Intergenic Intergenic -10207 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 539.5-3 chr10 58339373 58339683 + 3.5 NA intron (NM_003338, intron 1 of 6) intron (NM_003338, intron 1 of 6) 4522 NM_003338 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 519.5-7 chr2 214615568 214615847 + 3.5 NA Intergenic Intergenic 105525 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 1048-4 chr2 163372746 163373234 + 3.5 NA Intergenic L2a|LINE|L2 363018 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 430.5-9 chr10 86626570 86626706 + 3.5 NA Intergenic L1MEf|LINE|L1 -27909 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 447-12 chr18 49581779 49582021 + 3.5 NA intron (NM_006033, intron 6 of 9) MIRc|SINE|MIR 19843 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 918 chr1 165375065 165375575 + 3.5 NA Intergenic Intergenic -18605 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 405.5-19 chr5 145077354 145077504 + 3.5 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 757913 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 402.5-21 chr3 177408328 177408502 + 3.5 NA Intergenic L4_A_Mam|LINE|RTE-X -33506 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 796.5-6 chr8 83244963 83245344 + 3.5 NA Intergenic Intergenic -158605 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 574.5-5 chr15 62142907 62143187 + 3.5 NA Intergenic Intergenic 22238 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 699 chr1 116176485 116176684 + 3.5 NA Intergenic AluJb|SINE|Alu 64829 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 494.5-7 chr20 32135983 32136181 + 3.5 NA exon (NM_014742, exon 3 of 18) exon (NM_014742, exon 3 of 18) 26354 NM_001363731 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 514.5-8 chr2 60394278 60394610 + 3.5 NA Intergenic Intergenic -3069 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 372-9 chr10 46535424 46535603 + 3.5 NA Intergenic Intergenic 20558 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 890-4 chr3 95563004 95563321 + 3.5 NA Intergenic Intergenic 120031 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 777.5-3 chr4 87306278 87306662 + 3.5 NA intron (NM_178135, intron 6 of 6) intron (NM_178135, intron 6 of 6) -5887 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 569-7 chr16 64584696 64585002 + 3.5 NA Intergenic Intergenic 537214 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 521-19 chr8 37531173 37531428 + 3.5 NA Intergenic AluSx|SINE|Alu -9914 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 350-45 chr9 27439976 27440195 + 3.5 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -84229 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 718.5-4 chr14 38032541 38032796 + 3.5 NA Intergenic L1ME3Cz|LINE|L1 -130544 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 537-8 chr14 62864965 62865245 + 3.5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 180353 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 711-4 chr5 146457203 146457774 + 3.5 NA intron (NM_006706, intron 3 of 21) intron (NM_006706, intron 3 of 21) 10155 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 830 chr1 99691576 99691829 + 3.5 NA intron (NM_017734, intron 7 of 7) MamTip2|DNA|hAT-Tip100 21251 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 330.5-4 chr1 206713983 206714151 + 3.5 NA intron (NM_004759, intron 1 of 9) L2c|LINE|L2 29162 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 580-17 chr7 94735326 94735542 + 3.5 NA Intergenic L1PA13|LINE|L1 79064 NM_001040152 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 388.5-21 chr6 71078383 71078594 + 3.5 NA Intergenic L2a|LINE|L2 -121428 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 568-4 chr10 109012224 109012489 + 3.5 NA Intergenic MLT2B1|LTR|ERVL 910890 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 752.5-3 chr6 46034615 46034886 + 3.5 NA intron (NM_001370649, intron 1 of 5) LTR16E1|LTR|ERVL -18861 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 458.5-12 chr21 21853226 21853450 + 3.5 NA Intergenic MER70B|LTR|ERVL 106353 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 857-3 chr16 35349262 35349831 + 3.5 NA Intergenic Intergenic -13870 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 354.5-3 chr1 227668179 227668345 + 3.5 NA intron (NR_102302, intron 5 of 5) Charlie13a|DNA|hAT-Charlie 29445 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 628.5-4 chr11 112510340 112510861 + 3.5 NA intron (NR_120559, intron 2 of 2) L1MB8|LINE|L1 26255 NR_120560 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 897-3 chr14 29827396 29827753 + 3.5 NA intron (NM_001330069, intron 1 of 18) MER5A1|DNA|hAT-Charlie 99522 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 712.5-9 chr7 54094726 54094995 + 3.5 NA Intergenic Intergenic -235837 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 420.5-21 chr8 123219877 123220036 + 3.5 NA TTS (NM_032847) TTS (NM_032847) -4093 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 454-10 chr17 66074136 66074319 + 3.5 NA intron (NM_001302891, intron 6 of 24) L1M4a1|LINE|L1 117665 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 694-13 chr8 84711370 84711617 + 3.5 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 5566 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 413.5-24 chr8 131432960 131433185 + 3.5 NA Intergenic L1ME1|LINE|L1 -392163 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 355.5-18 chr6 128537943 128538053 + 3.5 NA Intergenic Intergenic -17399 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 844 chr1 70763456 70763763 + 3.5 NA intron (NR_125938, intron 5 of 6) MLT1F1|LTR|ERVL-MaLR 57156 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 496-31 chrX 57194259 57194479 + 3.5 NA Intergenic L1MA2|LINE|L1 -56744 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 455-29 chr6 72688410 72688620 + 3.5 NA intron (NM_001160132, intron 1 of 13) Tigger15a|DNA|TcMar-Tigger 58020 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 437.5-14 chr8 120172774 120172958 + 3.5 NA intron (NM_021110, intron 5 of 47) L1MEd|LINE|L1 47764 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 728-2 chr12 19047721 19048015 + 3.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -81865 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 506.5-6 chr17 28362838 28363068 + 3.5 NA 3' UTR (NM_152464, exon 6 of 6) 3' UTR (NM_152464, exon 6 of 6) 2198 NM_001080837 645832 NM_001080837 ENSG00000274529 SEBOX OG-9|OG9|OG9X SEBOX homeobox protein-coding 508.5-10 chr2 172826355 172826566 + 3.5 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 4873 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 402-23 chr3 191609798 191610199 + 3.5 NA Intergenic L1PA15|LINE|L1 148835 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 523-15 chr19 16814523 16814704 + 3.5 NA intron (NM_001347994, intron 18 of 18) intron (NM_001347994, intron 18 of 18) -14785 NM_001297595 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 624-6 chr4 41660713 41660910 + 3.5 NA intron (NM_001330786, intron 10 of 22) intron (NM_001330786, intron 10 of 22) 47909 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 553-3 chr1 90942399 90942654 + 3.5 NA intron (NM_201269, intron 2 of 5) L2c|LINE|L2 78982 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 443.5-6 chr14 26530890 26531227 + 3.5 NA intron (NM_001366393, intron 2 of 4) L3|LINE|CR1 22372 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 481-2 chr10 57962361 57962602 + 3.5 NA Intergenic Intergenic 305413 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 405-21 chr4 42997306 42997454 + 3.5 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 104114 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 513.5-6 chr14 62439153 62439396 + 3.5 NA Intergenic L1M2a|LINE|L1 -299301 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 574.5-13 chr5 30838115 30838437 + 3.5 NA Intergenic Intergenic -355410 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 561.5-10 chr20 41666969 41667278 + 3.5 NA Intergenic Intergenic -48746 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 585-8 chr2 175224601 175224906 + 3.5 NA Intergenic L1MB7|LINE|L1 -43043 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 519.5 chr1 21122580 21122904 + 3.5 NA intron (NM_001198803, intron 1 of 12) intron (NM_001198803, intron 1 of 12) -11359 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 798 chr14 79943371 79943837 + 3.5 NA Intergenic Intergenic -267815 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 579.5-10 chr3 62750817 62751123 + 3.5 NA intron (NM_003716, intron 3 of 29) L1ME4a|LINE|L1 124446 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 745.5 chr1 12278475 12278853 + 3.5 NA intron (NM_015378, intron 19 of 69) intron (NM_015378, intron 19 of 69) 48634 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 742.5-2 chr11 59785550 59785905 + 3.5 NA intron (NM_001178040, intron 2 of 9) intron (NM_001178040, intron 2 of 9) 25051 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 665.5 chr1 106221731 106221934 + 3.5 NA Intergenic L1MA4|LINE|L1 -193579 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 552-21 chr8 112817326 112817514 + 3.5 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 173927 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 596.5-6 chr5 12628373 12628564 + 3.5 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -39391 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 501-24 chr8 53403450 53403659 + 3.5 NA Intergenic MIR3|SINE|MIR 120411 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 717.5-6 chr5 72736296 72736514 + 3.5 NA Intergenic L1PA15|LINE|L1 -75736 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 756 chr1 36603450 36603699 + 3.5 NA Intergenic Intergenic -120260 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 555-8 chr15 80765422 80765744 + 3.5 NA Intergenic AluSg|SINE|Alu -13787 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 677.5-9 chr8 139853327 139853535 + 3.5 NA intron (NM_001160372, intron 21 of 22) L2c|LINE|L2 -150308 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 276-39 chr5 50705387 50705488 + 3.5 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 38023 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 590.5-16 chr7 1785839 1786112 + 3.5 NA Intergenic L1ME3E|LINE|L1 -43665 NR_120509 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 677.5-10 chrX 142870563 142870951 + 3.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -155171 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 602-2 chr1 67000669 67000843 + 3.5 NA 3' UTR (NM_015139, exon 12 of 12) 3' UTR (NM_015139, exon 12 of 12) 53392 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 473.5-15 chr8 15245925 15246081 + 3.5 NA Intergenic Intergenic -7572 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 412-18 chr2 131123426 131123569 + 3.5 NA intron (NM_017958, intron 2 of 7) intron (NM_017958, intron 2 of 7) 18650 NM_001309451 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 646.5-4 chr17 77544007 77544283 + 3.5 NA Intergenic Intergenic -2796 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 516.5-2 chr10 92403898 92404272 + 3.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -14576 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 408.5-16 chr3 35855198 35855374 + 3.5 NA Intergenic L1MDa|LINE|L1 110810 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 581.5-17 chr5 104194086 104194286 + 3.5 NA Intergenic Intergenic -631397 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 481.5-18 chr9 97062660 97062978 + 3.5 NA Intergenic Intergenic 19126 NR_002942 340508 Hs.680438 NR_002942 ENSG00000228376 GAS2L1P2 - growth arrest specific 2 like 1 pseudogene 2 pseudo 411.5-19 chr20 56231194 56231357 + 3.5 NA Intergenic Intergenic -17457 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 645.5-4 chr12 72087962 72088286 + 3.5 NA Intergenic Intergenic 149279 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 578.5-3 chr10 84577781 84578117 + 3.5 NA Intergenic L1M4|LINE|L1 152780 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 335-30 chr2 194776302 194776430 + 3.5 NA Intergenic Intergenic 45771 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 397.5-27 chr5 85067811 85067939 + 3.5 NA Intergenic Intergenic -682995 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 314-38 chr7 49289266 49289503 + 3.5 NA Intergenic Intergenic 364837 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 613-8 chr5 142050488 142050705 + 3.5 NA Intergenic Intergenic -37569 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 442-12 chr2 37076833 37076985 + 3.5 NA intron (NM_019024, intron 4 of 35) intron (NM_019024, intron 4 of 35) 7463 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 475-31 chr8 82737241 82737436 + 3.5 NA Intergenic Intergenic -174766 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 633-9 chr5 27653442 27654026 + 3.5 NA Intergenic L1M4|LINE|L1 181442 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 832 chr1 86671893 86672289 + 3.5 NA intron (NR_135837, intron 4 of 4) L1MA3|LINE|L1 32402 NR_135838 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 526-16 chr4 126423631 126423794 + 3.5 NA Intergenic MER2|DNA|TcMar-Tigger 916453 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 934-2 chr2 150259390 150259790 + 3.5 NA Intergenic Intergenic -2583 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 621.5-2 chr14 39911387 39911619 + 3.5 NA Intergenic Intergenic -479003 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 414-48 chr9 86278736 86278938 + 3.5 NA intron (NM_030940, intron 1 of 3) intron (NM_030940, intron 1 of 3) 3701 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 546.5 chr1 53462183 53462480 + 3.5 NA intron (NM_033067, intron 2 of 3) intron (NM_033067, intron 2 of 3) 2932 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 552.5-10 chr19 39961774 39961980 + 3.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -9128 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 868-4 chr6 54378285 54378813 + 3.5 NA intron (NM_014464, intron 9 of 10) intron (NM_014464, intron 9 of 10) 70108 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 578.5-4 chr14 61002399 61002592 + 3.5 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -20805 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 522.5-11 chr3 27423252 27423593 + 3.5 NA intron (NM_001258380, intron 7 of 23) intron (NM_001258380, intron 7 of 23) 33356 NM_001258380 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 516-21 chr3 105854610 105855067 + 3.5 NA intron (NR_135809, intron 2 of 18) AluSg4|SINE|Alu 12753 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 619-9 chr20 33538415 33538806 + 3.5 NA intron (NM_001032999, intron 1 of 10) AluSx1|SINE|Alu -23755 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 720-2 chr12 26421377 26421651 + 3.5 NA intron (NM_002223, intron 49 of 56) intron (NM_002223, intron 49 of 56) 225941 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 503-22 chr4 179899449 179899708 + 3.5 NA Intergenic Intergenic 1259571 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 627.5-5 chr14 51021101 51021467 + 3.5 NA intron (NM_015163, intron 3 of 9) intron (NM_015163, intron 3 of 9) 74420 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 530-13 chr2 71745908 71746114 + 3.5 NA Intergenic MSTD|LTR|ERVL-MaLR 279312 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 969.5-2 chr5 12401407 12401770 + 3.5 NA Intergenic L1MEf|LINE|L1 -173269 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 610-5 chr13 28667535 28667848 + 3.5 NA intron (NM_015932, intron 3 of 5) intron (NM_015932, intron 3 of 5) 8561 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 514.5-5 chr14 69961640 69961878 + 3.5 NA intron (NM_001034852, intron 3 of 11) L1MB7|LINE|L1 -16374 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 692-4 chr13 82820954 82821409 + 3.5 NA Intergenic Intergenic 1061212 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 700-2 chr10 85442899 85443268 + 3.5 NA intron (NR_120670, intron 1 of 2) L1ME3G|LINE|L1 -6509 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 630.5-3 chr10 125404174 125404453 + 3.5 NA Intergenic L1MA3|LINE|L1 -170058 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 503.5-12 chr5 35166076 35166590 + 3.5 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -48211 NR_037910 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 417.5-10 chr20 35822608 35822846 + 3.5 NA intron (NM_016436, intron 2 of 17) AluJo|SINE|Alu 50712 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 514-20 chr7 5992577 5992976 + 3.5 NA intron (NM_001322007, intron 7 of 13) L1MA10|LINE|L1 16273 NM_001322014 5395 Hs.632637 NM_000535 ENSG00000122512 PMS2 HNPCC4|MLH4|PMS2CL|PMSL2 PMS1 homolog 2, mismatch repair system component protein-coding 747.5-3 chr14 69517460 69517829 + 3.5 NA intron (NM_001161498, intron 6 of 12) intron (NM_001161498, intron 6 of 12) 32916 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 468-20 chr2 214272060 214272251 + 3.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -138899 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 552-10 chr18 62838026 62838186 + 3.5 NA intron (NM_194449, intron 2 of 16) L1ME3F|LINE|L1 122565 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 812-2 chr14 71003560 71003883 + 3.5 NA intron (NM_014982, intron 8 of 35) intron (NM_014982, intron 8 of 35) 96262 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 491-23 chr5 167547269 167547495 + 3.5 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -26277 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 1019-4 chr4 180892244 180892571 + 3.5 NA Intergenic Intergenic 266742 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 376.5-19 chr3 61467099 61467221 + 3.5 NA Intergenic Intergenic -94411 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 616-5 chr17 75430110 75430442 + 3.5 NA Intergenic Intergenic 24207 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 620-8 chr17 70106390 70106631 + 3.5 NA intron (NM_001291623, intron 1 of 2) intron (NM_001291623, intron 1 of 2) 1665 NM_001291623 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 572.5-6 chr4 58322730 58323021 + 3.5 NA Intergenic L1ME3F|LINE|L1 213453 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 603.5-9 chr4 99759592 99759784 + 3.5 NA Intergenic Intergenic -57139 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 896.5 chr2 63080389 63080756 + 3.5 NA Intergenic Intergenic 29742 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 419-14 chr18 43279679 43279852 + 3.5 NA Intergenic Intergenic -2275 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 753.5-4 chr5 82191014 82191384 + 3.5 NA intron (NM_031482, intron 5 of 7) L4_C_Mam|LINE|RTE-X 87155 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 456.5-10 chr20 45227355 45227590 + 3.5 NA Intergenic L1ME2|LINE|L1 6099 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 649.5-10 chr8 129284543 129284840 + 3.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -43451 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 457-19 chr3 159286068 159286266 + 3.5 NA intron (NM_001197108, intron 1 of 6) L1PA15|LINE|L1 3521 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 723-5 chr2 222949022 222949426 + 3.5 NA Intergenic Intergenic 88188 NM_001354158 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 503-19 chr3 114759915 114760067 + 3.5 NA promoter-TSS (NM_001164345) promoter-TSS (NM_001164345) -884 NM_001164344 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 382-14 chr15 59684971 59685080 + 3.5 NA intron (NM_001368059, intron 1 of 8) intron (NM_001368059, intron 1 of 8) 3901 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 595.5-7 chr4 54593389 54593651 + 3.5 NA Intergenic MER33|DNA|hAT-Charlie 13611 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 497.5-18 chr8 127700024 127700221 + 3.5 NA TTS (NR_117102) TTS (NR_117102) 33845 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 1037-3 chr9 85713131 85713786 + 3.5 NA intron (NM_015239, intron 1 of 25) AluSq2|SINE|Alu 28571 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 899.5-3 chr18 6055263 6055832 + 3.5 NA intron (NM_173464, intron 16 of 19) intron (NM_173464, intron 16 of 19) -159593 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 625-15 chr5 146500087 146500350 + 3.5 NA intron (NM_006706, intron 16 of 21) intron (NM_006706, intron 16 of 21) 15895 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 386.5-21 chr5 58251867 58252002 + 3.5 NA Intergenic Intergenic -129593 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 265-4 chr10 10467376 10467490 + 3.5 NA intron (NM_001326317, intron 1 of 14) L1ME2|LINE|L1 4883 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 545-23 chr8 12961097 12961327 + 3.5 NA intron (NM_020844, intron 1 of 4) L1MC2|LINE|L1 15539 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 362-11 chr15 81013682 81013838 + 3.5 NA Intergenic Intergenic 12837 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 505.5-17 chr7 7833150 7833417 + 3.5 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -114676 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 576.5-6 chr7 7225961 7226260 + 3.5 NA intron (NM_020156, intron 1 of 3) MIRb|SINE|MIR -29044 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 803-9 chr4 101365241 101365734 + 3.5 NA Intergenic L1ME3C|LINE|L1 17710 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 894.5-2 chr4 121222374 121222755 + 3.5 NA intron (NM_001244764, intron 1 of 12) MIRb|SINE|MIR 4919 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 527-13 chr19 29448831 29449026 + 3.5 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 76824 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 278-20 chr3 100065513 100065639 + 3.5 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 48937 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 781-2 chr20 63504433 63504875 + 3.5 NA Intergenic AluJb|SINE|Alu -5571 NM_001958 1917 Hs.433839 NM_001958 ENSG00000101210 EEF1A2 EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL eukaryotic translation elongation factor 1 alpha 2 protein-coding 417-18 chr14 34176256 34176399 + 3.5 NA Intergenic Intergenic -225253 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 599.5-5 chr16 71197207 71197466 + 3.5 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 33386 NM_017558 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 650-4 chr10 52407033 52407365 + 3.5 NA Intergenic L1PREC2|LINE|L1 48073 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 631-3 chr12 10657850 10658269 + 3.5 NA intron (NM_018423, intron 1 of 10) MER41-int|LTR|ERV1 15993 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 685.5-2 chr14 73598945 73599317 + 3.5 NA Intergenic MLT1G|LTR|ERVL-MaLR 7425 NM_152331 122970 Hs.49433 NM_152331 ENSG00000177465 ACOT4 PTE-Ib|PTE1B|PTE2B acyl-CoA thioesterase 4 protein-coding 346-13 chr11 103473901 103474080 + 3.5 NA intron (NM_001377, intron 88 of 88) intron (NM_001377, intron 88 of 88) 364564 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 951-2 chr4 31900049 31900434 + 3.5 NA Intergenic Intergenic -97138 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 586.5-16 chr8 53056673 53056969 + 3.5 NA Intergenic MIRb|SINE|MIR 116913 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 693.5-4 chr4 168273546 168273871 + 3.5 NA intron (NM_017631, intron 17 of 37) intron (NM_017631, intron 17 of 37) 45044 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 672.5-3 chr2 53235985 53236357 + 3.5 NA Intergenic Intergenic -531612 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 710-5 chr12 58540320 58540575 + 3.5 NA Intergenic Intergenic -51255 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 443.5-7 chr14 61525266 61525474 + 3.5 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 44824 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 404.5-14 chr2 209625392 209625520 + 3.5 NA intron (NM_001039538, intron 4 of 14) MIR|SINE|MIR 45777 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 632.5-5 chr3 149734517 149734737 + 3.5 NA Intergenic MER2|DNA|TcMar-Tigger -9839 NM_001348362 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 409.5-27 chr7 28302192 28302323 + 3.5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 2936 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 1115 chr5 121564294 121564730 + 3.5 NA Intergenic THE1D|LTR|ERVL-MaLR 241962 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 490.5-13 chr3 60365829 60366047 + 3.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 251932 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 665.5-2 chr11 115627994 115628254 + 3.5 NA Intergenic Intergenic 106638 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 400.5-27 chr8 63928048 63928239 + 3.5 NA intron (NR_125826, intron 4 of 4) MIR|SINE|MIR 158713 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 719.5-4 chr21 26481106 26481472 + 3.5 NA intron (NM_052954, intron 2 of 3) L1ME4b|LINE|L1 75346 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 1032.5 chr1 31167033 31167488 + 3.5 NA Intergenic L3|LINE|CR1 72627 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 385.5-9 chr13 93345107 93345302 + 3.5 NA intron (NM_005708, intron 1 of 8) MIRb|SINE|MIR 118397 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 649-5 chr16 12627821 12628119 + 3.5 NA Intergenic AluSx1|SINE|Alu -92351 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 395.5-26 chr4 57957807 57958039 + 3.5 NA Intergenic Intergenic 532051 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 1185 chr20 31697827 31698383 + 3.5 NA intron (NR_134257, intron 1 of 2) AluSz|SINE|Alu -23402 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 574 chr1 93435555 93435997 + 3.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -12342 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 781-7 chrX 71085062 71085466 + 3.5 NA Intergenic Intergenic -10587 NM_005938 4303 Hs.584654 NM_005938 ENSG00000184481 FOXO4 AFX|AFX1|MLLT7 forkhead box O4 protein-coding 408.5-21 chr7 54737653 54737874 + 3.5 NA Intergenic Intergenic 21448 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 543.5-18 chr7 6021965 6022245 + 3.5 NA TTS (NM_014413) TTS (NM_014413) 5228 NR_145771 109616999 NR_145771 ENSG00000207217 SNORA80D - small nucleolar RNA, H/ACA box 80D snoRNA 532.5-4 chr1 171358074 171358236 + 3.5 NA Intergenic Intergenic 19259 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 892.5 chr1 71794507 71794797 + 3.5 NA intron (NR_046218, intron 2 of 2) L1ME3Cz|LINE|L1 42360 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 324-2 chr1 45887164 45887384 + 3.5 NA intron (NM_001324320, intron 4 of 29) intron (NM_001324320, intron 4 of 29) 22926 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 831-6 chr8 41575918 41576367 + 3.5 NA intron (NR_125824, intron 1 of 2) intron (NR_125824, intron 1 of 2) -2058 NM_178819 137964 Hs.355753 NM_178819 ENSG00000158669 GPAT4 1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7 glycerol-3-phosphate acyltransferase 4 protein-coding 497.5-7 chr2 35029924 35030103 + 3.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 352456 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 430.5-7 chr10 54900015 54900275 + 3.5 NA intron (NM_001354404, intron 3 of 34) L2a|LINE|L2 -98854 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 792-4 chr7 83248911 83249245 + 3.5 NA Intergenic Intergenic -86194 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 638.5-11 chr7 30330964 30331208 + 3.5 NA intron (NM_147128, intron 2 of 4) Kanga11a|DNA|TcMar-Tc2 -38964 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 701-9 chr8 76530395 76530678 + 3.5 NA Intergenic Intergenic 123882 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 329.5-7 chr12 54461517 54461735 + 3.5 NA intron (NM_144594, intron 6 of 8) AluJb|SINE|Alu 11976 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 704.5-2 chr1 117062828 117063047 + 3.5 NA intron (NM_003594, intron 3 of 22) intron (NM_003594, intron 3 of 22) 2611 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 383-21 chr22 45405589 45405704 + 3.5 NA intron (NM_148674, intron 4 of 24) intron (NM_148674, intron 4 of 24) 7953 NM_001291501 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 337-26 chr6 61386107 61386306 + 3.5 NA Intergenic ALR/Alpha|Satellite|centr -187924 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 633.5-6 chr2 127996350 127996722 + 3.5 NA intron (NM_001330303, intron 10 of 19) intron (NM_001330303, intron 10 of 19) 30759 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 329-2 chr1 86487722 86487867 + 3.5 NA intron (NM_001285, intron 7 of 13) intron (NM_001285, intron 7 of 13) 18867 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 599-5 chr16 10633373 10633711 + 3.5 NA intron (NM_144674, intron 6 of 6) intron (NM_144674, intron 6 of 6) -52944 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 423.5-23 chr5 2064634 2064864 + 3.5 NA Intergenic L1M5|LINE|L1 177418 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 599.5-10 chr7 19488979 19489381 + 3.5 NA Intergenic MER52A|LTR|ERV1 216256 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 524-2 chr10 84399375 84399600 + 3.5 NA intron (NM_018999, intron 3 of 10) intron (NM_018999, intron 3 of 10) -25452 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 634-3 chr12 40903629 40903875 + 3.5 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -4605 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 408-35 chr7 6228632 6228874 + 3.5 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 43871 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 765-3 chr19 29110230 29110817 + 3.5 NA Intergenic L1ME4b|LINE|L1 102628 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 254.5-13 chr14 62609321 62609393 + 3.5 NA Intergenic L1ME1|LINE|L1 436101 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 466-2 chr1 42075029 42075316 + 3.5 NA Intergenic L1MA4A|LINE|L1 -39238 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 455.5-18 chr6 53936850 53937080 + 3.5 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 6983 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 665.5-4 chr15 100789308 100789678 + 3.5 NA Intergenic Intergenic -60259 NR_160704 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 476.5-10 chr18 12712331 12712670 + 3.5 NA intron (NM_147163, intron 2 of 6) intron (NM_147163, intron 2 of 6) 9458 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 724.5-4 chr19 30111821 30112268 + 3.5 NA Intergenic MamRep137|DNA|TcMar-Tigger 169805 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 839-3 chr10 32205639 32206098 + 3.5 NA Intergenic Intergenic 141290 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 1192.5-2 chr17 48341256 48341875 + 3.5 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 47218 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 990.5-2 chr3 132996003 132996475 + 3.5 NA Intergenic Intergenic -42049 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 590-11 chr4 67736367 67736568 + 3.5 NA TTS (NM_000406) TTS (NM_000406) 19619 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 432-18 chr22 26882749 26883123 + 3.5 NA Intergenic Intergenic -20356 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 290-32 chr7 22347239 22347347 + 3.5 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 9861 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 446-21 chr2 82179915 82180075 + 3.5 NA Intergenic L1MB1|LINE|L1 -676808 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 710-3 chr10 101880802 101881137 + 3.5 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -37049 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 565.5-12 chr4 37771490 37771773 + 3.5 NA Intergenic AluSq4|SINE|Alu -55055 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 458.5 chr1 14490844 14491026 + 3.5 NA Intergenic L1ME4a|LINE|L1 -70962 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 621-14 chr3 148120796 148121194 + 3.5 NA Intergenic Intergenic 42836 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 432 chr11 10578509 10578665 + 3.5 NA intron (NM_001100163, intron 20 of 20) intron (NM_001100163, intron 20 of 20) -9922 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 704.5-4 chr17 70582439 70582857 + 3.5 NA Intergenic Intergenic 413113 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 337-33 chr9 4345341 4345517 + 3.5 NA Intergenic L2a|LINE|L2 -45361 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 527-3 chr1 118536677 118536949 + 3.5 NA Intergenic Intergenic -351585 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 515.5-10 chr4 96610114 96610326 + 3.5 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 299517 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 840.5 chr1 155550323 155550697 + 3.5 NA intron (NM_018489, intron 1 of 27) L2a|LINE|L2 -11532 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 784.5-3 chr6 47528702 47529045 + 3.5 NA intron (NM_012120, intron 2 of 17) L1MC|LINE|L1 51084 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 884.5-2 chr4 55012172 55012493 + 3.5 NA Intergenic Intergenic 113263 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 360-31 chr3 126834257 126834405 + 3.5 NA intron (NM_032343, intron 4 of 7) L2c|LINE|L2 130091 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 787.5-7 chr3 94465489 94465845 + 3.5 NA Intergenic Intergenic 402606 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 730-6 chrX 71136954 71137238 + 3.5 NA intron (NM_005120, intron 38 of 44) intron (NM_005120, intron 38 of 44) -7735 NM_001166660 54413 Hs.438877 NM_018977 ENSG00000196338 NLGN3 HNL3 neuroligin 3 protein-coding 631-13 chr5 24500144 24500426 + 3.5 NA intron (NM_001317222, intron 7 of 10) intron (NM_001317222, intron 7 of 10) 144693 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 624.5-13 chr5 128645249 128645482 + 3.5 NA Intergenic Charlie7a|DNA|hAT-Charlie -107120 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 374-16 chr2 25906876 25907103 + 3.5 NA Intergenic MSTD|LTR|ERVL-MaLR -28502 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 541.5-15 chr21 28631213 28631391 + 3.5 NA Intergenic Intergenic 91984 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 543-13 chr6 68063910 68064065 + 3.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 8636 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 489-10 chr12 70517509 70517741 + 3.5 NA 3' UTR (NM_001206971, exon 31 of 31) 3' UTR (NM_001206971, exon 31 of 31) 92399 NM_001206971 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 632.5-4 chr21 18987880 18988190 + 3.5 NA Intergenic MER21-int|LTR|ERVL -228223 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 388-34 chr8 15041103 15041330 + 3.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -187706 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 359.5-7 chr12 4539897 4540202 + 3.5 NA intron (NM_006479, intron 1 of 8) L2|LINE|L2 1159 NM_006479 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 327.5-26 chr7 112280291 112280420 + 3.5 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 73660 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 666.5-3 chr16 47602238 47602510 + 3.5 NA intron (NM_001031835, intron 14 of 31) Tigger16a|DNA|TcMar-Tigger 141043 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 653.5-7 chr20 44707383 44707598 + 3.5 NA Intergenic L1M5|LINE|L1 -7354 NM_001323370 8839 Hs.592145 NM_003881 ENSG00000064205 CCN5 CT58|CTGF-L|WISP2 cellular communication network factor 5 protein-coding 518-18 chr5 44557115 44557339 + 3.5 NA Intergenic L1M5|LINE|L1 -46945 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 496-12 chr19 58465580 58465793 + 3.5 NA Intergenic AluJr|SINE|Alu -1394 NM_014347 25799 Hs.515660 NM_014347 ENSG00000083812 ZNF324 ZF5128|ZNF324A zinc finger protein 324 protein-coding 370-19 chr2 215971601 215971772 + 3.5 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 41865 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 513.5-2 chr11 37310076 37310394 + 3.5 NA Intergenic L1MEc|LINE|L1 -628366 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 569.5-5 chr12 102010182 102010482 + 3.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 51659 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 621-17 chr6 38955784 38955985 + 3.5 NA intron (NM_001371, intron 81 of 91) L1MA6|LINE|L1 -2777 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 625.5-4 chr17 67467452 67467687 + 3.5 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -3920 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 493-13 chr18 79331388 79331631 + 3.5 NA intron (NR_148360, intron 18 of 31) intron (NR_148360, intron 18 of 31) -64421 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 678-6 chr5 23849239 23849588 + 3.5 NA Intergenic Intergenic -101935 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 280 chr1 88371892 88372036 + 3.5 NA Intergenic Intergenic -312180 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 708-5 chr20 39625035 39625387 + 3.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -379250 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 479.5-21 chr8 131096422 131096777 + 3.5 NA Intergenic Intergenic -55690 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 329.5-21 chr7 96985618 96985758 + 3.5 NA intron (NR_015448, intron 1 of 2) MIRb|SINE|MIR -19865 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 807.5-3 chr3 98896900 98897304 + 3.5 NA intron (NM_080927, intron 1 of 15) intron (NM_080927, intron 1 of 15) 4593 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 368-6 chr12 4621202 4621317 + 3.5 NA intron (NM_001278309, intron 5 of 5) Tigger3b|DNA|TcMar-Tigger 16396 NM_001282285 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 810-4 chr9 86128479 86128834 + 3.5 NA non-coding (NR_110996, exon 1 of 5) non-coding (NR_110996, exon 1 of 5) 1116 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 582-9 chr15 93236788 93237017 + 3.5 NA Intergenic Intergenic 30836 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 860-6 chr5 163368141 163368520 + 3.5 NA Intergenic Intergenic -69241 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 562-4 chr2 15455620 15455981 + 3.5 NA intron (NR_052013, intron 21 of 50) intron (NR_052013, intron 21 of 50) 105534 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 683.5-2 chr14 54145919 54146184 + 3.5 NA Intergenic L1PBa|LINE|L1 -189160 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 764-9 chr6 126653039 126653301 + 3.5 NA Intergenic Intergenic 168539 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 473.5-16 chr8 131164405 131164644 + 3.5 NA Intergenic Intergenic -123615 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 341.5-19 chr2 203730561 203730670 + 3.5 NA intron (NM_001243077, intron 3 of 3) intron (NM_001243077, intron 3 of 3) 23976 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 734.5-5 chr3 117242603 117242812 + 3.5 NA Intergenic Intergenic 321276 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 837 chr1 92759069 92759535 + 3.5 NA intron (NM_001308248, intron 1 of 18) intron (NM_001308248, intron 1 of 18) 25806 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 778.5-7 chr8 113044312 113044706 + 3.5 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 332643 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 616.5-16 chr5 117469826 117470089 + 3.5 NA intron (NR_046089, intron 2 of 5) MLT1E3|LTR|ERVL-MaLR 54445 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 496.5 chr1 44214614 44214766 + 3.5 NA intron (NM_019100, intron 2 of 9) intron (NM_019100, intron 2 of 9) 1219 NM_001034023 55929 Hs.8008 NM_019100 ENSG00000178028 DMAP1 DNMAP1|DNMTAP1|EAF2|MEAF2|SWC4 DNA methyltransferase 1 associated protein 1 protein-coding 358-34 chr3 184734013 184734212 + 3.5 NA intron (NR_160768, intron 3 of 4) intron (NR_160768, intron 3 of 4) 21869 NR_160768 107986163 NR_160768 LOC107986163 - uncharacterized LOC107986163 ncRNA 643.5-12 chr5 42556831 42557036 + 3.5 NA intron (NM_001242405, intron 1 of 9) intron (NM_001242405, intron 1 of 9) 6853 NM_001242405 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 579-16 chr3 77945261 77945440 + 3.5 NA Intergenic LTR84b|LTR|ERVL 103613 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 712.5-3 chr18 39796982 39797452 + 3.5 NA Intergenic MER61-int|LTR|ERV1 -44492 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 542.5-25 chr5 113306136 113306311 + 3.5 NA intron (NM_001085377, intron 3 of 18) L1MB5|LINE|L1 -11285 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 599 chr1 153473419 153473686 + 3.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12901 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 449.5-9 chr21 34253786 34254030 + 3.5 NA Intergenic L1MC3|LINE|L1 73231 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 585-12 chr4 183960504 183960714 + 3.5 NA intron (NM_020225, intron 1 of 3) intron (NM_020225, intron 1 of 3) 55302 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 725.5-8 chr5 129965343 129965860 + 3.5 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 61136 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 767.5-6 chr6 48715493 48715773 + 3.5 NA Intergenic Intergenic -646944 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 786-5 chr2 99057543 99058126 + 3.5 NA intron (NR_146001, intron 15 of 18) L1M4|LINE|L1 83346 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 569-17 chr5 157195105 157195432 + 3.5 NA intron (NM_005546, intron 1 of 16) intron (NM_005546, intron 1 of 16) 14372 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 422-28 chr8 67309454 67309619 + 3.5 NA intron (NM_006421, intron 1 of 38) intron (NM_006421, intron 1 of 38) 34245 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 551-10 chr12 8569370 8569620 + 3.5 NA Intergenic L1MA4|LINE|L1 -28590 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 511-21 chr5 111108382 111108598 + 3.5 NA intron (NM_139281, intron 12 of 22) intron (NM_139281, intron 12 of 22) 16318 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 896-2 chr16 64719417 64719786 + 3.5 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 402462 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 502-6 chr18 10012887 10013179 + 3.5 NA Intergenic Intergenic 99017 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 543.5-2 chr1 82153516 82153710 + 3.5 NA Intergenic Intergenic 351160 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 345.5-4 chr1 116066834 116067134 + 3.5 NA intron (NM_018420, intron 11 of 11) intron (NM_018420, intron 11 of 11) -44771 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 846-3 chr14 70654489 70654930 + 3.5 NA intron (NM_015351, intron 1 of 2) MER57B1|LTR|ERV1 12793 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 434.5-9 chr16 25370422 25370600 + 3.5 NA Intergenic L1MEh|LINE|L1 -112666 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 824-3 chr2 156674954 156675272 + 3.5 NA Intergenic L2b|LINE|L2 238734 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 462.5-8 chr16 49398936 49399086 + 3.5 NA intron (NM_144602, intron 4 of 4) intron (NM_144602, intron 4 of 4) 25207 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 695-10 chr8 68070243 68070479 + 3.5 NA intron (NM_024870, intron 13 of 39) intron (NM_024870, intron 13 of 39) 118315 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 749-5 chr5 30252324 30252617 + 3.5 NA Intergenic L1PA16|LINE|L1 371910 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 988.5 chr2 219987362 219987779 + 3.5 NA Intergenic Intergenic -81005 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 515-5 chr11 76598872 76599077 + 3.5 NA Intergenic MER33|DNA|hAT-Charlie 70964 NM_001370188 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 906.5-3 chr4 32614197 32614664 + 3.5 NA Intergenic MER72B|LTR|ERV1 263392 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 799.5-2 chr1 226393152 226393451 + 3.5 NA intron (NM_001618, intron 2 of 22) L1M5|LINE|L1 14792 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 554.5-14 chr7 28563570 28563839 + 3.5 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) -122429 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 327-24 chr2 31253836 31253983 + 3.5 NA intron (NM_014600, intron 3 of 5) intron (NM_014600, intron 3 of 5) 19757 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 353-5 chr1 233721494 233721823 + 3.5 NA Intergenic LTR48B|LTR|ERV1 97506 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 624-10 chr6 113303947 113304130 + 3.5 NA Intergenic Intergenic 129409 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 359.5-20 chr2 38618653 38618867 + 3.5 NA Intergenic LTR101_Mam|LTR|ERVL -15724 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 560.5-7 chr18 10736150 10736453 + 3 NA intron (NM_022068, intron 32 of 51) intron (NM_022068, intron 32 of 51) 23348 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 511-8 chr12 95905186 95905404 + 3 NA intron (NM_182496, intron 5 of 15) intron (NM_182496, intron 5 of 15) 37319 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 435.5-6 chr20 37956886 37957123 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie 53877 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 411-12 chr12 10658527 10658692 + 3 NA intron (NM_018423, intron 1 of 10) MER41-int|LTR|ERV1 15443 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 554-19 chr3 116616051 116616368 + 3 NA Intergenic Intergenic 63736 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 513-4 chr10 27887296 27887511 + 3 NA intron (NM_001290021, intron 10 of 13) L1M4|LINE|L1 94468 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 639-15 chr8 92556220 92556562 + 3 NA Intergenic Intergenic 99103 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 773 chr1 186737752 186738081 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 57262 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 325-30 chr7 159245466 159245677 + 3 NA Intergenic L1ME1|LINE|L1 -100614 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 335-37 chr22 26756548 26756739 + 3 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 83800 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 711-5 chr7 78124431 78124832 + 3 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) -222611 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 615-10 chr2 140656901 140657145 + 3 NA intron (NM_018557, intron 41 of 90) intron (NM_018557, intron 41 of 90) -70338 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 858-4 chr3 95802157 95802631 + 3 NA Intergenic Intergenic -119201 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 345-40 chr7 69368386 69368534 + 3 NA Intergenic AluSz|SINE|Alu 229164 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 420-30 chr4 94671225 94671448 + 3 NA Intergenic LTR41B|LTR|ERVL 86197 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 463.5-16 chr5 20970520 20970801 + 3 NA Intergenic Intergenic -355125 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 555-19 chr4 115876797 115877236 + 3 NA Intergenic MER77|LTR|ERVL -422709 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 316-13 chr18 78234334 78234479 + 3 NA Intergenic L1M4a2|LINE|L1 -240679 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 453-29 chr7 114546052 114546274 + 3 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) -107182 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 401 chr1 40895067 40895285 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -32813 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 689-2 chr11 29845057 29845391 + 3 NA Intergenic Intergenic 137169 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 327-41 chr6 140080458 140080595 + 3 NA intron (NR_121622, intron 2 of 3) intron (NR_121622, intron 2 of 3) -89265 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 559-9 chr19 3931236 3931585 + 3 NA Intergenic Intergenic -1693 NM_170678 27231 Hs.135458 NM_014446 ENSG00000077009 NMRK2 ITGB1BP3|MIBP|NRK2 nicotinamide riboside kinase 2 protein-coding 458-25 chr6 74498766 74499024 + 3 NA intron (NR_110856, intron 2 of 3) L1ME3|LINE|L1 429444 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 535-2 chr1 19868139 19868534 + 3 NA Intergenic Intergenic -14059 NM_015207 23252 Hs.374987 NM_015207 ENSG00000169914 OTUD3 DUBA4 OTU deubiquitinase 3 protein-coding 653-11 chr8 53401542 53402367 + 3 NA Intergenic Intergenic 122011 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 754.5-7 chr8 124188232 124188539 + 3 NA Intergenic L1PA16|LINE|L1 -16863 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 614.5-11 chr7 31596387 31596704 + 3 NA intron (NM_194300, intron 8 of 12) L1M6|LINE|L1 43543 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 405.5-3 chr15 81576072 81576355 + 3 NA Intergenic Intergenic -202000 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 758 chr12 111508356 111508945 + 3 NA intron (NR_132311, intron 14 of 23) AluSx|SINE|Alu 73788 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 481.5 chr1 47563865 47564072 + 3 NA Intergenic Intergenic -126651 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 871-2 chr20 59753995 59754406 + 3 NA intron (NM_080672, intron 3 of 12) intron (NM_080672, intron 3 of 12) 32990 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 537.5-11 chr2 139332361 139332700 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 435206 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1398.5 chr10 37763140 37763841 + 3 NA intron (NR_148006, intron 7 of 7) LTR3A|LTR|ERVK 31685 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 432-7 chr14 98698823 98699061 + 3 NA Intergenic Intergenic -12671 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 354-30 chr9 90789160 90789386 + 3 NA Intergenic L1MB8|LINE|L1 -12327 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 295-38 chr5 7922225 7922356 + 3 NA Intergenic L1MA4|LINE|L1 53142 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 468-7 chr12 22101121 22101366 + 3 NA Intergenic L1PREC2|LINE|L1 55025 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 594-17 chr8 120906795 120907180 + 3 NA Intergenic Intergenic -94941 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 499.5-20 chr5 83055717 83055912 + 3 NA 3' UTR (NM_174909, exon 4 of 4) 3' UTR (NM_174909, exon 4 of 4) 8523 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 409.5-29 chr8 98970659 98970853 + 3 NA Intergenic L2c|LINE|L2 26314 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 833-2 chr10 82781372 82781743 + 3 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -548637 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 430.5-23 chr8 49289631 49289852 + 3 NA Intergenic Intergenic 217397 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 480-14 chr17 8653150 8653420 + 3 NA Intergenic L1MC5|LINE|L1 -22524 NM_001256095 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 336.5-11 chr2 36176090 36176305 + 3 NA Intergenic Intergenic 179373 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 343.5-22 chr21 28605870 28605997 + 3 NA Intergenic Intergenic 66615 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 316-2 chr1 63952649 63952839 + 3 NA intron (NM_005012, intron 1 of 8) MamRep488|DNA|hAT-Tip100 159461 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 511.5-16 chr21 26322516 26322764 + 3 NA Intergenic L2a|LINE|L2 -70995 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 463-8 chr13 60304703 60304871 + 3 NA Intergenic L1MB5|LINE|L1 -36683 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 229-20 chr3 149345273 149345394 + 3 NA Intergenic L1MC5a|LINE|L1 -11697 NM_138786 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 470-27 chr3 188347608 188348002 + 3 NA intron (NM_001167671, intron 2 of 10) MIR3|SINE|MIR 122400 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 504-5 chr10 49109301 49109638 + 3 NA intron (NM_001031746, intron 1 of 7) intron (NM_001031746, intron 1 of 7) 6053 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 750-3 chr10 17622358 17622853 + 3 NA Intergenic AluSx|SINE|Alu -5231 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 408-20 chr2 13198498 13198753 + 3 NA Intergenic Intergenic -191612 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 573-13 chr3 150124385 150124679 + 3 NA intron (NR_136187, intron 1 of 2) intron (NR_136187, intron 1 of 2) 28089 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 413-38 chr7 13688200 13688409 + 3 NA Intergenic Intergenic 298210 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 433.5-28 chr7 58028810 58028962 + 3 NA Intergenic ALR/Alpha|Satellite|centr 578709 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 412.5-27 chr6 40632440 40632594 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -45153 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 476-10 chr11 74408820 74409069 + 3 NA Intergenic Intergenic 9707 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 1153 chr16 19498361 19498892 + 3 NA 3' UTR (NM_001308161, exon 21 of 21) 3' UTR (NM_001308161, exon 21 of 21) 23472 NM_001324067 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 804-3 chr14 53880613 53880903 + 3 NA Intergenic Intergenic 67726 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 409.5-6 chr13 93230651 93230849 + 3 NA intron (NM_005708, intron 1 of 8) L3b|LINE|CR1 3943 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 369.5-2 chr1 55699135 55699298 + 3 NA Intergenic Intergenic 245747 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 1080-2 chr7 46161437 46162055 + 3 NA Intergenic Intergenic -240474 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 511-12 chr2 224333307 224333610 + 3 NA Intergenic AluSz6|SINE|Alu 68536 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 473-21 chr7 45881928 45882117 + 3 NA Intergenic Intergenic -6466 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 492-21 chr20 29262989 29263300 + 3 NA Intergenic ALR/Alpha|Satellite|centr 153817 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 389-14 chr15 64346869 64347191 + 3 NA intron (NM_001329606, intron 1 of 11) L1MD3|LINE|L1 9143 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 473-14 chr3 55672724 55673071 + 3 NA intron (NR_132749, intron 16 of 17) intron (NR_132749, intron 16 of 17) -13428 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 545-15 chr2 203897814 203898152 + 3 NA Intergenic Intergenic 30212 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 685-3 chr12 64156505 64156905 + 3 NA 3' UTR (NM_020762, exon 22 of 22) 3' UTR (NM_020762, exon 22 of 22) 65591 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 724.5-6 chr2 42658853 42659404 + 3 NA intron (NM_001330443, intron 7 of 16) intron (NM_001330443, intron 7 of 16) 90496 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 587-7 chr18 2844526 2844826 + 3 NA Intergenic AluJb|SINE|Alu -2330 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 513-19 chr21 37611830 37612072 + 3 NA 3' UTR (NM_002240, exon 4 of 4) 3' UTR (NM_002240, exon 4 of 4) 191652 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 305.5-9 chr16 76409639 76409760 + 3 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 99847 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 496-22 chr6 81822867 81823117 + 3 NA Intergenic Intergenic -8800 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 371-33 chr9 69665700 69665845 + 3 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 6599 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 738-7 chr3 192513222 192513574 + 3 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -1624 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 693-3 chr10 111994653 111995042 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 188918 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 546.5-8 chr5 45225066 45225369 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR 416270 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 601.5-14 chr5 134941265 134941654 + 3 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) -26448 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 630-3 chr10 5985771 5986116 + 3 NA Intergenic Intergenic -7202 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 651.5-4 chr20 62689462 62689899 + 3 NA Intergenic Intergenic -19156 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 375-27 chr6 51834981 51835136 + 3 NA intron (NM_138694, intron 51 of 66) MIR3|SINE|MIR 213188 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 744-3 chr11 113774529 113774924 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -1034 NM_004724 9183 Hs.503886 NM_004724 ENSG00000086827 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 721-5 chr22 37328448 37328785 + 3 NA Intergenic MIRb|SINE|MIR 26223 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 859.5-3 chr3 96098056 96098553 + 3 NA Intergenic Intergenic -261660 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 401.5-2 chr1 93704377 93704551 + 3 NA intron (NM_001261408, intron 3 of 13) MIR|SINE|MIR -22627 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 398 chr1 98915997 98916191 + 3 NA intron (NM_001037317, intron 4 of 5) intron (NM_001037317, intron 4 of 5) -88182 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 670-9 chr22 50536589 50537018 + 3 NA Intergenic MER65-int|LTR|ERV1 -4224 NM_001014440 440836 Hs.531314 NM_001014440 ENSG00000177989 ODF3B ODF3L3 outer dense fiber of sperm tails 3B protein-coding 597-3 chr12 30252985 30253208 + 3 NA Intergenic Intergenic 424148 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 686-9 chr9 111430457 111430707 + 3 NA exon (NM_001364929, exon 9 of 50) exon (NM_001364929, exon 9 of 50) 52980 NM_001364931 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 790-5 chr21 30462598 30462968 + 3 NA Intergenic Intergenic 17584 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 532.5 chr1 46050706 46050924 + 3 NA intron (NM_001303429, intron 6 of 8) L1MB8|LINE|L1 79858 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 518-8 chr14 63629061 63629443 + 3 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 12619 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 843-5 chr4 32033174 32033729 + 3 NA intron (NR_125936, intron 1 of 2) L2a|LINE|L2 -11029 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 468-44 chr7 48869687 48869926 + 3 NA Intergenic Intergenic -54741 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 692.5-2 chr16 88945169 88945736 + 3 NA intron (NM_001290330, intron 1 of 1) L1MC2|LINE|L1 -4102 NM_175931 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 744 chr1 59789557 59789871 + 3 NA TTS (NR_110627) TTS (NR_110627) 16919 NR_110627 101926944 Hs.720353 NR_110627 LOC101926944 - uncharacterized LOC101926944 ncRNA 484.5-6 chr10 33099417 33099646 + 3 NA intron (NR_160030, intron 1 of 2) AluJr|SINE|Alu 17276 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 252-14 chr2 114488471 114488609 + 3 NA intron (NM_001321908, intron 2 of 25) MER103C|DNA|hAT-Charlie 26963 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 449.5-3 chr10 30425837 30426126 + 3 NA Intergenic Intergenic -8040 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 432.5-19 chr7 122533521 122533714 + 3 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 165500 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 463.5-23 chr7 143241235 143241439 + 3 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) 19300 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 301-16 chr12 117242342 117242504 + 3 NA intron (NM_001204213, intron 19 of 27) intron (NM_001204213, intron 19 of 27) -51953 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 463.5-21 chr6 50173447 50173659 + 3 NA Intergenic L1ME2|LINE|L1 -123624 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 978 chr2 187547946 187548410 + 3 NA intron (NM_001329239, intron 1 of 9) intron (NM_001329239, intron 1 of 9) 6257 NM_001329241 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 711-2 chr4 66051779 66052081 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -224894 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 748.5-4 chr4 80352876 80353350 + 3 NA intron (NM_152770, intron 1 of 5) L1MEc|LINE|L1 17393 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 516-16 chr2 99556339 99556718 + 3 NA intron (NM_001025108, intron 21 of 23) intron (NM_001025108, intron 21 of 23) -66511 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 687-4 chr13 50794954 50795396 + 3 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -12680 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 462-22 chr2 213528350 213528665 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -229560 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 984-3 chr8 62785321 62785859 + 3 NA intron (NM_001304533, intron 4 of 6) L1MB8|LINE|L1 -192271 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 448.5-3 chr10 117098620 117098838 + 3 NA intron (NM_001258300, intron 1 of 17) intron (NM_001258300, intron 1 of 17) 27857 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 457.5-31 chr8 134748022 134748260 + 3 NA Intergenic L1ME3A|LINE|L1 -35110 NM_001289394 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 336-10 chr11 22345965 22346108 + 3 NA intron (NM_020346, intron 3 of 11) intron (NM_020346, intron 3 of 11) 7655 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 807-2 chr10 81390037 81390460 + 3 NA Intergenic L1M4b|LINE|L1 -484946 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 588-16 chr18 50253351 50253718 + 3 NA intron (NM_145020, intron 3 of 7) MIR|SINE|MIR 12961 NM_145020 220136 Hs.658630 NM_145020 ENSG00000172361 CFAP53 CCDC11|HTX6 cilia and flagella associated protein 53 protein-coding 602.5-6 chr22 33595831 33596135 + 3 NA intron (NM_133642, intron 5 of 14) L3|LINE|CR1 108937 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 450-24 chr8 121321903 121322099 + 3 NA Intergenic Intergenic -317345 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 481-4 chr12 13544786 13545092 + 3 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -168194 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 370.5-24 chr6 109544929 109545099 + 3 NA intron (NM_001145128, intron 26 of 40) intron (NM_001145128, intron 26 of 40) -61777 NM_001164313 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 178-9 chr16 85387757 85387855 + 3 NA Intergenic L2a|LINE|L2 -81481 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 508-25 chr8 102826217 102826478 + 3 NA TTS (NM_148174) TTS (NM_148174) 19525 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 534-6 chr11 6577782 6578319 + 3 NA Intergenic L1M5|LINE|L1 25566 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 623-8 chr7 46115344 46115672 + 3 NA Intergenic L1MC3|LINE|L1 -194236 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 581-15 chr5 148170801 148171097 + 3 NA exon (NM_001001325, exon 3 of 5) exon (NM_001001325, exon 3 of 5) 2403 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 741-5 chr6 135403089 135403550 + 3 NA intron (NM_017651, intron 21 of 27) L1MB7|LINE|L1 94421 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 349.5-19 chr2 229240546 229240662 + 3 NA intron (NM_001330158, intron 1 of 3) L1M4a1|LINE|L1 -8512 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 804-10 chr8 112408993 112409363 + 3 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -234315 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 334.5-26 chr4 92588123 92588335 + 3 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 283830 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 388.5-24 chr7 85975845 85976070 + 3 NA Intergenic Intergenic 554835 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 514.5-7 chr2 30409720 30409962 + 3 NA Intergenic Intergenic -37405 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 483.5-5 chr17 42460716 42461197 + 3 NA exon (NM_001130020, exon 2 of 21) exon (NM_001130020, exon 2 of 21) 2078 NM_001130021 535 Hs.463074 NM_005177 ENSG00000033627 ATP6V0A1 ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 ATPase H+ transporting V0 subunit a1 protein-coding 512-11 chr20 6952083 6952354 + 3 NA Intergenic L1MC4a|LINE|L1 184532 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 389-19 chr2 65816239 65816472 + 3 NA Intergenic L1ME4c|LINE|L1 -383756 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 522-36 chr8 137401029 137401261 + 3 NA Intergenic L1PA13|LINE|L1 12443 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 752.5-4 chr8 127197333 127197957 + 3 NA promoter-TSS (NR_120364) promoter-TSS (NR_120364) -18 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 375-13 chr17 70795001 70795156 + 3 NA Intergenic Intergenic 407101 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 470-37 chr8 84668045 84668261 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -37774 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 361.5-22 chr4 154760847 154760967 + 3 NA Intergenic Intergenic 16907 NM_004744 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 633-7 chr4 70071085 70071507 + 3 NA intron (NR_003720, intron 4 of 12) intron (NR_003720, intron 4 of 12) 3910 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 627-11 chr4 38091543 38091943 + 3 NA intron (NM_001253912, intron 15 of 20) intron (NM_001253912, intron 15 of 20) -18438 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 331-10 chr10 112420454 112420642 + 3 NA intron (NM_203379, intron 14 of 20) intron (NM_203379, intron 14 of 20) 26366 NM_022494 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 211-26 chr7 104574124 104574286 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 229887 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 430.5-17 chr2 104190208 104190464 + 3 NA Intergenic Intergenic 217996 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 364-25 chr3 171686497 171686716 + 3 NA intron (NM_001130081, intron 15 of 25) intron (NM_001130081, intron 15 of 25) 123877 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 636 chr11 64993310 64993604 + 3 NA intron (NM_138456, intron 2 of 2) MLT1A|LTR|ERVL-MaLR -3180 NM_001300808 116071 Hs.124840 NM_138456 ENSG00000168062 BATF2 SARI basic leucine zipper ATF-like transcription factor 2 protein-coding 643-6 chr14 78349605 78349893 + 3 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -53970 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 486-8 chr11 30522572 30522935 + 3 NA intron (NM_001584, intron 2 of 5) intron (NM_001584, intron 2 of 5) 57740 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 547.5-3 chr2 83883731 83884034 + 3 NA Intergenic Intergenic 361068 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 578-16 chr3 112778479 112778846 + 3 NA Intergenic Intergenic -23816 NR_149026 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 309.5-28 chr8 138515587 138515838 + 3 NA Intergenic MIR|SINE|MIR -17982 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 254.5 chr1 116703209 116703362 + 3 NA intron (NR_149353, intron 2 of 3) L1MEc|LINE|L1 9173 NR_149353 388667 Hs.127851 NR_149353 ENSG00000203864 C1orf137 - chromosome 1 open reading frame 137 (putative) ncRNA 469-24 chr7 23706313 23706469 + 3 NA Intergenic L1ME1|LINE|L1 -3828 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 603-2 chr11 113023445 113023714 + 3 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -60119 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 445.5-23 chr7 4289464 4289681 + 3 NA Intergenic L1MD2|LINE|L1 -154735 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 446-31 chr5 126250946 126251128 + 3 NA Intergenic MER57E1|LTR|ERV1 34138 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 720.5-10 chr8 120048607 120049056 + 3 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -76271 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 486-23 chr2 201497253 201497455 + 3 NA intron (NM_001168216, intron 11 of 12) intron (NM_001168216, intron 11 of 12) 45614 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 696 chr12 26390469 26390903 + 3 NA intron (NM_002223, intron 54 of 56) L1MB7|LINE|L1 195113 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 365-27 chr7 15258025 15258199 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -283254 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 535-19 chr5 133992899 133993166 + 3 NA intron (NM_003374, intron 1 of 8) intron (NM_003374, intron 1 of 8) 11736 NR_036625 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 948 chr1 105065077 105065513 + 3 NA Intergenic Intergenic 553640 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 343-18 chr22 28226781 28227216 + 3 NA intron (NM_001145418, intron 5 of 22) AluJr|SINE|Alu -232871 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 434-26 chr8 16802586 16802742 + 3 NA Intergenic Intergenic 199681 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 709-2 chr1 48374352 48374894 + 3 NA intron (NM_019073, intron 9 of 12) intron (NM_019073, intron 9 of 12) 97581 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 688.5-2 chr11 92207075 92207372 + 3 NA Intergenic Intergenic -17811 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 373-4 chr10 36776023 36776294 + 3 NA Intergenic L1MEg|LINE|L1 -349699 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 1041 chr3 3439390 3439901 + 3 NA Intergenic Intergenic -259928 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 429-2 chr1 98974666 98974826 + 3 NA intron (NM_001037317, intron 1 of 5) intron (NM_001037317, intron 1 of 5) -29530 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 529.5-2 chr10 49665385 49665628 + 3 NA TTS (NM_020986) TTS (NM_020986) -14145 NM_182554 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 581-20 chr9 32380937 32381289 + 3 NA Intergenic L2a|LINE|L2 -3490 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 606.5-4 chr2 26644530 26644882 + 3 NA Intergenic Intergenic -3340 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 450-12 chr22 25894071 25894345 + 3 NA intron (NM_001318245, intron 27 of 43) intron (NM_001318245, intron 27 of 43) 152020 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 579-7 chr17 77978639 77979200 + 3 NA Intergenic L1MA4|LINE|L1 -25318 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 679-17 chr8 88459633 88460028 + 3 NA Intergenic L1PA12|LINE|L1 -132347 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 511-18 chr5 28366326 28366540 + 3 NA Intergenic Intergenic -78768 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 352-37 chr6 140376208 140376387 + 3 NA Intergenic Intergenic 171045 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 863-4 chr2 77123110 77123569 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 137374 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 266-7 chr12 40331002 40331138 + 3 NA intron (NM_198578, intron 39 of 50) HAL1ME|LINE|L1 -62324 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 526.5-10 chr17 4471417 4471612 + 3 NA intron (NM_001320449, intron 7 of 10) AluJb|SINE|Alu -27367 NM_001124758 124976 Hs.22824 NM_001124758 ENSG00000183018 SPNS2 DFNB115|SLC62A2 sphingolipid transporter 2 protein-coding 448-17 chr2 80758502 80758727 + 3 NA Intergenic L1MD1|LINE|L1 445235 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 346-36 chrX 19473196 19473377 + 3 NA intron (NM_001001671, intron 3 of 28) intron (NM_001001671, intron 3 of 28) 41975 NM_001001671 389840 Hs.713701 NM_001001671 ENSG00000180815 MAP3K15 ASK3|bA723P2.3 mitogen-activated protein kinase kinase kinase 15 protein-coding 688.5-7 chr8 98447148 98447451 + 3 NA Intergenic MIRb|SINE|MIR 20341 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 261-22 chr5 107353672 107353782 + 3 NA Intergenic Intergenic 317210 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 468-15 chr19 45121395 45121677 + 3 NA intron (NM_019121, intron 1 of 12) intron (NM_019121, intron 1 of 12) 28357 NM_019121 284352 Hs.285363 NM_019121 ENSG00000104866 PPP1R37 LRRC68 protein phosphatase 1 regulatory subunit 37 protein-coding 577.5-12 chr17 55880266 55880513 + 3 NA Intergenic L1MA9|LINE|L1 129284 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 631-7 chr17 52705601 52706282 + 3 NA Intergenic Intergenic -156180 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 737-9 chr7 6118881 6119204 + 3 NA intron (NM_032172, intron 3 of 17) AluJo|SINE|Alu 14093 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 640-10 chr5 122009798 122010117 + 3 NA intron (NM_152546, intron 4 of 7) intron (NM_152546, intron 4 of 7) 47982 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 507-15 chr2 234137885 234138218 + 3 NA Intergenic Intergenic 87349 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 337.5-23 chr4 13506140 13506339 + 3 NA Intergenic L1MEd|LINE|L1 -21874 NM_001159601 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 485.5-8 chr20 7973178 7973673 + 3 NA Intergenic Intergenic -32967 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 535-4 chr1 229621893 229622071 + 3 NA intron (NM_001025247, intron 1 of 3) Kanga2_a|DNA|TcMar-Tc2 4065 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 617-14 chrX 106843662 106843982 + 3 NA intron (NM_198881, intron 10 of 11) L1MB7|LINE|L1 41149 NM_198881 54885 Hs.351798 NM_017752 ENSG00000133138 TBC1D8B GRAMD8B TBC1 domain family member 8B protein-coding 747 chr14 23477216 23477689 + 3 NA intron (NM_001042635, intron 9 of 10) intron (NM_001042635, intron 9 of 10) 7749 NM_001042635 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 408.5-11 chr2 18469463 18469689 + 3 NA Intergenic Intergenic 91077 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 528-35 chr8 143242892 143243232 + 3 NA Intergenic L1MC4|LINE|L1 -3877 NM_001271156 286128 Hs.668016 NM_173832 ENSG00000181638 ZFP41 ZNF753|zfp-41 ZFP41 zinc finger protein protein-coding 346.5-18 chr20 62603535 62603761 + 3 NA Intergenic Intergenic 38736 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 279-5 chr11 123618855 123619009 + 3 NA intron (NM_020716, intron 18 of 19) intron (NM_020716, intron 18 of 19) 35675 NM_001040151 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 349-29 chr5 63650564 63650726 + 3 NA Intergenic Intergenic 311647 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 693.5-3 chr15 70037857 70038188 + 3 NA Intergenic L1MC5|LINE|L1 41446 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 542 chr1 42774443 42774654 + 3 NA intron (NR_040733, intron 2 of 3) intron (NR_040733, intron 2 of 3) 7299 NR_040733 79078 Hs.148845 NM_024097 ENSG00000164008 C1orf50 - chromosome 1 open reading frame 50 protein-coding 394 chr1 43552144 43552353 + 3 NA intron (NM_001329137, intron 4 of 34) L2-3_Crp|LINE|L2 21365 NM_002840 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 440.5-22 chr8 78236472 78236843 + 3 NA Intergenic Intergenic -279683 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 487-33 chr6 147501229 147501607 + 3 NA Intergenic LTR50|LTR|ERVL -7272 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 234-16 chr2 226841619 226841728 + 3 NA intron (NM_001167608, intron 3 of 8) L1PA11|LINE|L1 5619 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 421.5-16 chr2 81427635 81427851 + 3 NA Intergenic Intergenic 39203 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 964.5-2 chr12 2975390 2975817 + 3 NA intron (NM_201443, intron 1 of 10) AluSp|SINE|Alu 15668 NM_201443 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 457.5-14 chr2 107137405 107137649 + 3 NA Intergenic Intergenic 211998 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 640.5-9 chr5 170636057 170636376 + 3 NA intron (NM_001278339, intron 1 of 7) L2|LINE|L2 45254 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 378-4 chr11 23531075 23531302 + 3 NA Intergenic L1MB1|LINE|L1 -111998 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 902.5-3 chr18 13104820 13105341 + 3 NA intron (NM_032142, intron 40 of 44) intron (NM_032142, intron 40 of 44) -113680 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 424-21 chr5 117767077 117767304 + 3 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 36829 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 591.5-3 chr14 47736930 47737259 + 3 NA Intergenic Intergenic 24010 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 536 chr1 54371429 54371660 + 3 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 34850 NM_145716 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 398-16 chr2 56849205 56849420 + 3 NA Intergenic Intergenic -663542 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 625-13 chr5 38788611 38788876 + 3 NA intron (NR_109951, intron 2 of 3) L1MC4|LINE|L1 57086 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 309-29 chr4 53487390 53487501 + 3 NA intron (NM_001126328, intron 6 of 10) intron (NM_001126328, intron 6 of 10) -12632 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 313.5-47 chrX 67522339 67522516 + 3 NA Intergenic MIRc|SINE|MIR -21594 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 575.5-12 chrX 26234569 26234838 + 3 NA Intergenic Intergenic 18534 NM_001271752 347541 Hs.224079 NM_001271752 ENSG00000188408 MAGEB5 CT3.3|MAGE-B5 MAGE family member B5 protein-coding 338-37 chr8 88383917 88384118 + 3 NA Intergenic Intergenic -56534 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 293-15 chr2 75190277 75190388 + 3 NA intron (NM_015727, intron 1 of 3) L3|LINE|CR1 9188 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 496.5-13 chr4 32238804 32239100 + 3 NA Intergenic Intergenic -112086 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 463-28 chr8 86206697 86206888 + 3 NA Intergenic Intergenic 23589 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 957-2 chr2 123439710 123440058 + 3 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -366403 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 341.5-21 chr20 18505895 18506146 + 3 NA Intergenic AluJr|SINE|Alu -1462 NM_032986 10483 Hs.369373 NM_006363 ENSG00000101310 SEC23B CDA-II|CDAII|CDAN2|CWS7|HEMPAS|hSec23B SEC23 homolog B, coat complex II component protein-coding 672-6 chr14 72105442 72105776 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 172082 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 464-29 chrX 94587454 94587797 + 3 NA Intergenic MER41A|LTR|ERV1 475601 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 736-4 chr14 56154611 56155095 + 3 NA intron (NM_021255, intron 1 of 5) L1ME4a|LINE|L1 36442 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 710.5-3 chr2 170155141 170155574 + 3 NA Intergenic Intergenic -22790 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 397.5-34 chr8 122171816 122171989 + 3 NA Intergenic Intergenic 396742 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 329.5-18 chr6 52893125 52893234 + 3 NA Intergenic Intergenic 16519 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 506-13 chr2 19060545 19060756 + 3 NA Intergenic Intergenic -33679 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 431.5-14 chr3 177926414 177926598 + 3 NA Intergenic Intergenic 109641 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 493-28 chr9 87821264 87821466 + 3 NA Intergenic Intergenic -23380 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 274-32 chr7 5650400 5650585 + 3 NA intron (NM_207111, intron 14 of 16) MLT1E2|LTR|ERVL-MaLR 29969 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 514-14 chr3 44253822 44254069 + 3 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 12059 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 316-3 chr10 43844406 43844623 + 3 NA promoter-TSS (NR_033923) promoter-TSS (NR_033923) -792 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 647 chr1 153193675 153193989 + 3 NA Intergenic Intergenic -9598 NM_001010857 149018 Hs.125785 NM_001010857 ENSG00000203784 LELP1 - late cornified envelope like proline rich 1 protein-coding 532.5-6 chr14 95664263 95664587 + 3 NA intron (NR_152604, intron 4 of 7) intron (NR_152604, intron 4 of 7) 12328 NR_028288 27004 Hs.510368 NM_012468 TCL6 TNG1|TNG2 T cell leukemia/lymphoma 6 ncRNA 646-5 chr6 45714059 45714448 + 3 NA Intergenic Intergenic 223344 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 664.5-11 chr5 73932083 73932440 + 3 NA intron (NM_001080479, intron 36 of 36) Chap1_Mam|DNA|hAT-Charlie 118715 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 636.5-2 chr12 10253724 10253961 + 3 NA intron (NM_001351060, intron 2 of 8) L1PA14|LINE|L1 14881 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 293-18 chr3 161651592 161651795 + 3 NA Intergenic Intergenic 154885 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 436.5-8 chr2 196884140 196884328 + 3 NA intron (NM_001321099, intron 13 of 27) L1PB3|LINE|L1 42473 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 466-30 chr8 49596835 49597086 + 3 NA Intergenic L1MC2|LINE|L1 -84780 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 813-9 chr8 110737494 110737822 + 3 NA Intergenic L1M2|LINE|L1 289775 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 464-6 chr13 67386897 67387184 + 3 NA Intergenic L1PREC2|LINE|L1 14653 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 789.5-2 chr2 99088285 99088583 + 3 NA intron (NR_146001, intron 9 of 18) MER44A|DNA|TcMar-Tigger 52746 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 561-12 chr21 22402873 22403251 + 3 NA Intergenic MER51-int|LTR|ERV1 304445 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 505-19 chr3 78561941 78562255 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 457361 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 349-42 chr9 113830183 113830404 + 3 NA Intergenic L1MDa|LINE|L1 -45989 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 318-12 chr15 24999115 24999267 + 3 NA intron (NR_146177, intron 17 of 147) intron (NR_146177, intron 17 of 147) 12266 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 502-13 chr3 76142185 76142434 + 3 NA Intergenic L1MA1|LINE|L1 -356760 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 618-16 chr7 65290874 65291247 + 3 NA Intergenic Intergenic -82739 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 516-18 chr2 203036125 203036426 + 3 NA intron (NM_001114132, intron 2 of 54) intron (NM_001114132, intron 2 of 54) 21396 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 397-37 chr9 28249535 28249716 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 469680 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 598.5 chr1 173703929 173704199 + 3 NA Intergenic HERV16-int|LTR|ERVL -10917 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 615-4 chr12 15625019 15625423 + 3 NA intron (NM_004447, intron 18 of 20) L2a|LINE|L2 78610 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 301-7 chr10 79456367 79456467 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -10793 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 695.5-4 chr3 100199909 100200248 + 3 NA Intergenic L1M2|LINE|L1 14254 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 363.5-6 chr11 116042840 116042989 + 3 NA Intergenic Intergenic -282714 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 423-38 chr8 101061485 101061732 + 3 NA intron (NR_033962, intron 2 of 2) intron (NR_033962, intron 2 of 2) 9554 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 370-2 chr1 93890270 93890431 + 3 NA intron (NM_001308253, intron 5 of 5) intron (NM_001308253, intron 5 of 5) -11144 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 719-4 chr8 108249802 108250449 + 3 NA Intergenic L2a|LINE|L2 -1408 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 318.5-8 chr14 62151861 62152124 + 3 NA Intergenic Intergenic -12019 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 312-12 chr2 29894568 29894705 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 26950 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 581.5-16 chr4 146256758 146257080 + 3 NA exon (NM_001300842, exon 12 of 13) exon (NM_001300842, exon 12 of 13) 42381 NM_001354631 345051 Hs.170876 NM_001354631 ENSG00000250673 REELD1 - reeler domain containing 1 protein-coding 402 chr1 51771925 51772096 + 3 NA intron (NM_148906, intron 11 of 22) intron (NM_148906, intron 11 of 22) 42160 NM_001330580 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 709-3 chr10 30027839 30028301 + 3 NA exon (NM_001350001, exon 4 of 5) exon (NM_001350001, exon 4 of 5) 31516 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 986 chr1 23320376 23320811 + 3 NA intron (NM_001102399, intron 6 of 9) L2|LINE|L2 23691 NM_001297620 10236 Hs.373763 NM_005826 ENSG00000125944 HNRNPR HNRPR|hnRNP-R heterogeneous nuclear ribonucleoprotein R protein-coding 851-5 chr8 56519414 56519950 + 3 NA non-coding (NR_038236, exon 3 of 3) non-coding (NR_038236, exon 3 of 3) 40141 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 663-10 chr5 79493524 79493821 + 3 NA intron (NM_001277078, intron 1 of 5) intron (NM_001277078, intron 1 of 5) 20164 NM_001277078 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 445.5-30 chrX 71600318 71600553 + 3 NA intron (NM_052957, intron 7 of 12) Charlie18a|DNA|hAT-Charlie 18076 NM_001142797 2833 Hs.198252 NM_001504 ENSG00000186810 CXCR3 CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR C-X-C motif chemokine receptor 3 protein-coding 576-12 chr3 95475255 95475669 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 207731 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 315.5-9 chr12 20470721 20470938 + 3 NA intron (NM_000921, intron 1 of 15) MLT1A|LTR|ERVL-MaLR -101035 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 554-3 chr1 172374004 172374223 + 3 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -46572 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 667-4 chr22 34991618 34991942 + 3 NA intron (NR_138042, intron 1 of 4) GA-rich|Low_complexity|Low_complexity 6136 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 664 chr12 1656969 1657231 + 3 NA Intergenic Intergenic 3280 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 709.5-4 chr2 237004649 237005065 + 3 NA Intergenic L1MB2|LINE|L1 51310 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 435-20 chr3 88713913 88714102 + 3 NA Intergenic L1MA1|LINE|L1 375551 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 418.5 chr1 22514043 22514217 + 3 NA intron (NM_001083621, intron 13 of 18) intron (NM_001083621, intron 13 of 18) -49359 NM_001006943 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 470-33 chr6 35554008 35554310 + 3 NA Intergenic Intergenic -41263 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 641.5-2 chr12 123708471 123708753 + 3 NA TTS (NM_024809) TTS (NM_024809) -3741 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 780-4 chr8 77809367 77809717 + 3 NA Intergenic L1PA16|LINE|L1 358845 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 456-25 chr5 25274844 25275171 + 3 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 84054 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 724-13 chr8 126108709 126109106 + 3 NA Intergenic MIR|SINE|MIR -157710 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 466.5-17 chr4 85285790 85285969 + 3 NA Intergenic Intergenic -189271 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 397.5-7 chr13 68258856 68259052 + 3 NA Intergenic MER61-int|LTR|ERV1 626371 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 820-4 chr4 143510608 143511051 + 3 NA Intergenic Intergenic -2873 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 597-2 chr10 108057569 108057875 + 3 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 11571 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 679-12 chr2 85616125 85616485 + 3 NA exon (NM_001256725, exon 1 of 14) exon (NM_001256725, exon 1 of 14) 119 NM_001256725 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 559-25 chr9 119470777 119471005 + 3 NA Intergenic L1MA5|LINE|L1 -101456 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 747-2 chr2 172789845 172790200 + 3 NA intron (NM_007023, intron 1 of 30) L1MB1|LINE|L1 -31565 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 431.5-22 chr8 16676954 16677163 + 3 NA Intergenic Intergenic 325287 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 676.5-9 chr7 31382914 31383237 + 3 NA Intergenic L1MEd|LINE|L1 -42349 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 502-9 chr2 43485992 43486285 + 3 NA intron (NM_001083953, intron 25 of 37) intron (NM_001083953, intron 25 of 37) 109836 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 693-9 chr4 32549122 32549524 + 3 NA Intergenic Intergenic 198285 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 604.5-5 chr16 5486444 5486973 + 3 NA Intergenic Intergenic 129542 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 266-21 chr2 72201076 72201258 + 3 NA intron (NR_135773, intron 19 of 21) L1ME3Cz|LINE|L1 -53305 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 645-16 chrX 153679109 153679461 + 3 NA intron (NM_001366975, intron 2 of 12) L1MC3|LINE|L1 -4924 NM_001039582 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 673-8 chrX 38782434 38782798 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -18816 NM_021242 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 578-15 chr20 47239466 47239876 + 3 NA intron (NM_001281774, intron 15 of 23) intron (NM_001281774, intron 15 of 23) 72704 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 304-23 chr21 43986498 43986640 + 3 NA 3' UTR (NM_020132, exon 10 of 10) 3' UTR (NM_020132, exon 10 of 10) -25740 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 617.5-3 chr10 30325250 30325496 + 3 NA intron (NM_018109, intron 5 of 8) intron (NM_018109, intron 5 of 8) 23965 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 376.5-25 chr6 34493666 34493865 + 3 NA intron (NM_020804, intron 1 of 9) intron (NM_020804, intron 1 of 9) -21107 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 704-4 chr14 85002248 85002685 + 3 NA Intergenic Intergenic -269466 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 416.5-19 chr6 38563493 38563759 + 3 NA intron (NM_001172418, intron 5 of 10) L2c|LINE|L2 32441 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 700-12 chr5 98420248 98420803 + 3 NA Intergenic Intergenic -259286 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 365-24 chr5 127830490 127830699 + 3 NA intron (NM_001317938, intron 5 of 6) MLT1B|LTR|ERVL-MaLR 127205 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 688.5-8 chr8 111111956 111112363 + 3 NA intron (NR_125418, intron 3 of 3) L1ME3G|LINE|L1 -84726 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 458-17 chr2 121593696 121594071 + 3 NA intron (NM_015282, intron 2 of 38) AluSp|SINE|Alu 55579 NM_001142274 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 271.5-6 chr1 223766369 223766583 + 3 NA intron (NM_001146068, intron 16 of 20) intron (NM_001146068, intron 16 of 20) 53937 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 444-20 chr3 186701457 186701690 + 3 NA Intergenic MIRc|SINE|MIR -15786 NM_001102416 3827 Hs.77741 NM_000893 ENSG00000113889 KNG1 BDK|BK|HMWK|KNG kininogen 1 protein-coding 352-33 chr4 136120926 136121139 + 3 NA Intergenic Intergenic -207352 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 467-7 chr12 9878720 9878876 + 3 NA Intergenic Intergenic -2691 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 412-23 chr4 4306838 4307071 + 3 NA intron (NM_145291, intron 4 of 7) intron (NM_145291, intron 4 of 7) 16703 NM_145291 166793 Hs.419997 NM_145291 ENSG00000168826 ZBTB49 ZNF509 zinc finger and BTB domain containing 49 protein-coding 389-34 chr4 42206080 42206216 + 3 NA Intergenic Intergenic -53493 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 406.5-10 chr17 34459966 34460189 + 3 NA Intergenic Intergenic -96844 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 564-18 chr4 57400499 57400693 + 3 NA Intergenic Intergenic -25276 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 591-2 chr1 212915806 212916125 + 3 NA Intergenic Intergenic -34576 NM_001136475 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 418-12 chr2 146222811 146223005 + 3 NA Intergenic Intergenic -364149 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 358.5-13 chr2 74589412 74589569 + 3 NA intron (NM_001321739, intron 4 of 10) MamTip3|DNA|hAT-Tip100 35330 NM_001381 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 323.5-15 chr2 126895179 126895435 + 3 NA Intergenic Intergenic -3583 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 846-6 chr5 119768101 119768483 + 3 NA Intergenic Intergenic 138733 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 480-24 chr3 131185023 131185301 + 3 NA TTS (NM_001321223) TTS (NM_001321223) 157434 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 317.5-23 chr3 17208196 17208408 + 3 NA intron (NM_014744, intron 18 of 21) intron (NM_014744, intron 18 of 21) 275106 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 723-10 chr8 28478203 28478480 + 3 NA intron (NM_172366, intron 2 of 8) LTR16A|LTR|ERVL 11888 NM_172366 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 613.5-2 chr12 53021182 53021470 + 3 NA intron (NM_001300821, intron 4 of 14) FLAM_A|SINE|Alu 14870 NM_001300821 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 456-20 chr3 51227247 51227460 + 3 NA exon (NM_004947, exon 16 of 53) exon (NM_004947, exon 16 of 53) -157938 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 531-17 chr2 38322958 38323287 + 3 NA intron (NM_001330461, intron 1 of 12) intron (NM_001330461, intron 1 of 12) 53408 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 630-18 chr7 37625086 37625393 + 3 NA Intergenic Intergenic -58527 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 551-21 chr3 192201821 192202076 + 3 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -36682 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 810.5 chr14 66900058 66900555 + 3 NA intron (NM_001024218, intron 5 of 21) L1ME1|LINE|L1 -289134 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 882.5-5 chr6 148629077 148629393 + 3 NA Intergenic Intergenic -117795 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 396-27 chr6 13664659 13664916 + 3 NA intron (NM_005493, intron 2 of 13) L1ME2z|LINE|L1 47048 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 396-10 chr14 67517831 67518056 + 3 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -2458 NM_001348548 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 860-5 chr5 162948496 162948868 + 3 NA Intergenic Intergenic -488889 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 533-13 chr17 44705236 44705465 + 3 NA Intergenic L1PA17|LINE|L1 -3315 NR_036623 80174 Hs.369998 NM_025104 ENSG00000161692 DBF4B ASKL1|CHIFB|DRF1|ZDBF1B DBF4 zinc finger B protein-coding 496.5-17 chr8 136254365 136254551 + 3 NA Intergenic L2a|LINE|L2 -276340 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 297-35 chr8 137904454 137904637 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 179000 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 605-9 chr6 87783077 87783542 + 3 NA Intergenic HERV16-int|LTR|ERVL -1551 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 461-28 chr6 132838731 132838934 + 3 NA Intergenic Intergenic 21613 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 441-5 chr10 8060752 8061023 + 3 NA intron (NM_002051, intron 3 of 5) intron (NM_002051, intron 3 of 5) 6199 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 507-27 chr5 83334108 83334333 + 3 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -137454 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 483-40 chr9 105868537 105868841 + 3 NA Intergenic AluSz6|SINE|Alu 174148 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 970-3 chr4 48526875 48527440 + 3 NA intron (NM_015030, intron 53 of 63) intron (NM_015030, intron 53 of 63) 36905 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 265.5-24 chr3 61772644 61772761 + 3 NA intron (NM_002841, intron 2 of 29) L1MC|LINE|L1 211131 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 693-13 chr6 99847256 99847700 + 3 NA Intergenic Intergenic -146560 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 300-13 chr20 46884645 46884770 + 3 NA Intergenic MamRep1151|LTR?|LTR? -9917 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 406-17 chr4 118232673 118232850 + 3 NA intron (NM_004784, intron 8 of 13) MIR1_Amn|SINE|MIR -46001 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 705-9 chr6 24575737 24576148 + 3 NA intron (NM_001350410, intron 11 of 21) intron (NM_001350410, intron 11 of 21) 7285 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 372-25 chr2 173451095 173451339 + 3 NA Intergenic Intergenic 96345 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 513-5 chr10 37522383 37522635 + 3 NA Intergenic Intergenic 80422 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 529.5-3 chr10 121689981 121690219 + 3 NA Intergenic Intergenic -91642 NM_022970 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 483-3 chr10 43363693 43363857 + 3 NA Intergenic Intergenic -7861 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 215-23 chr3 131276649 131276737 + 3 NA intron (NM_001353043, intron 17 of 17) L1MC4|LINE|L1 -85152 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 588-32 chr8 105162462 105162709 + 3 NA Intergenic MIR|SINE|MIR -155853 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 408-3 chr1 99565211 99565416 + 3 NA intron (NR_031666, intron 1 of 4) L1MEg|LINE|L1 -77509 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 447-5 chr12 30205101 30205349 + 3 NA Intergenic Intergenic -420466 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 361-4 chr1 232756928 232757116 + 3 NA Intergenic Intergenic -14307 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 616.5-3 chr1 189049621 189050016 + 3 NA Intergenic L1PA16|LINE|L1 1426192 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 651-3 chr13 34396380 34396750 + 3 NA intron (NR_146542, intron 1 of 3) L1MA6|LINE|L1 48522 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 395-2 chr1 59725144 59725345 + 3 NA intron (NM_001350790, intron 15 of 16) L1MC3|LINE|L1 8052 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 532-4 chr14 68572266 68572557 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 56376 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 557-19 chr5 29835220 29835499 + 3 NA Intergenic L1MEd|LINE|L1 -45201 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 516-22 chr3 162977289 162977614 + 3 NA Intergenic L1M5|LINE|L1 325850 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 387.5-12 chr2 109397182 109397490 + 3 NA intron (NM_001099289, intron 3 of 9) intron (NM_001099289, intron 3 of 9) -83711 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 642-10 chr4 77974810 77975051 + 3 NA Intergenic L1ME1|LINE|L1 -82393 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 432-20 chr4 41225730 41225981 + 3 NA intron (NR_102709, intron 1 of 2) intron (NR_102709, intron 1 of 2) -11313 NM_001166050 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 368-15 chr18 77180897 77181186 + 3 NA Intergenic Tigger12A|DNA|TcMar-Tigger -48258 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 546.5-11 chr8 77056248 77056513 + 3 NA Intergenic Intergenic -55336 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 391-26 chr5 136408312 136408612 + 3 NA Intergenic Intergenic -42986 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 448.5-10 chr2 37168939 37169233 + 3 NA intron (NM_001367551, intron 6 of 6) L1ME4a|LINE|L1 -12039 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 276.5-34 chr5 162151119 162151292 + 3 NA intron (NM_000816, intron 8 of 8) intron (NM_000816, intron 8 of 8) 83563 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 520.5-8 chr18 3910874 3911244 + 3 NA intron (NM_001242761, intron 3 of 11) MIR3|SINE|MIR 25706 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 938 chr3 35354920 35355287 + 3 NA intron (NR_110817, intron 1 of 3) L1MC2|LINE|L1 38920 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 375-34 chr7 109743000 109743181 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 217123 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 925 chr15 64019549 64020100 + 3 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 26661 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 424-12 chr20 57893363 57893655 + 3 NA Intergenic Intergenic -110395 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 564-28 chr8 142299575 142299769 + 3 NA TTS (NM_001366902) TTS (NM_001366902) 101316 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 432-24 chr6 39087825 39088108 + 3 NA non-coding (NR_136562, exon 14 of 14) non-coding (NR_136562, exon 14 of 14) 13652 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 669-10 chr2 73853610 73853865 + 3 NA intron (NR_148670, intron 8 of 12) L1ME3B|LINE|L1 24770 NM_006463 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 531-16 chr19 33694414 33694750 + 3 NA intron (NM_001127895, intron 3 of 4) MIR|SINE|MIR 10054 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 823-3 chr3 68449148 68449635 + 3 NA intron (NM_001252216, intron 3 of 4) L2c|LINE|L2 -51246 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 462-28 chr4 91072582 91072804 + 3 NA intron (NM_001145065, intron 9 of 10) MIR|SINE|MIR 837662 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 475.5 chr10 34362982 34363180 + 3 NA intron (NM_001184789, intron 11 of 22) intron (NM_001184789, intron 11 of 22) 452215 NM_001184785 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 607.5-8 chr18 41454347 41454627 + 3 NA Intergenic L1MB3|LINE|L1 66190 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 819-10 chr7 116617852 116618252 + 3 NA Intergenic MamSINE1|SINE|tRNA-RTE -3232 NR_120506 100996266 Hs.552122 NR_120506 LINC01510 - long intergenic non-protein coding RNA 1510 ncRNA 775-2 chr15 47933415 47933816 + 3 NA Intergenic Intergenic -87379 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 308-22 chr20 8876410 8876565 + 3 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 45302 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 439.5-13 chr16 3163498 3163688 + 3 NA Intergenic Intergenic 19302 NR_132322 197350 Hs.434132 NR_132322 ENSG00000228146 CASP16P CASP16 caspase 16, pseudogene pseudo 487.5-13 chr2 35636356 35636825 + 3 NA Intergenic Intergenic 165185 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 709-7 chr2 194667560 194667969 + 3 NA Intergenic Intergenic -62831 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 423-9 chr14 63358556 63358755 + 3 NA Intergenic Intergenic -39720 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 708-7 chr9 96419653 96420050 + 3 NA Intergenic Intergenic -1481 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 595.5-3 chr14 53167945 53168328 + 3 NA Intergenic Intergenic 14782 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 568.5-7 chr20 60620012 60620305 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 55596 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 560-5 chr16 78447230 78447638 + 3 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 347780 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 517.5-17 chr7 29312813 29313083 + 3 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -103978 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 712-7 chr9 111399850 111400181 + 3 NA intron (NM_001363756, intron 23 of 48) L1MA4|LINE|L1 -69791 NM_205859 26248 Hs.381312 NM_205859 ENSG00000171133 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor family 2 subfamily K member 2 protein-coding 385.5-2 chr1 185740180 185740339 + 3 NA intron (NM_031935, intron 1 of 106) L2a|LINE|L2 5868 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 1022-2 chr3 185129670 185130320 + 3 NA intron (NM_001025266, intron 1 of 1) intron (NM_001025266, intron 1 of 1) 23065 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 551-13 chr17 57593751 57594082 + 3 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) 14496 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 459-22 chr4 175979771 175979973 + 3 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 22819 NR_048571 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 498-16 chr2 167067308 167067493 + 3 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 73555 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 240-48 chr9 29720371 29720534 + 3 NA Intergenic Intergenic -506851 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 383-34 chr6 159832222 159832386 + 3 NA Intergenic MER66B|LTR|ERV1 32028 NM_001271862 154197 Hs.349077 NM_173516 ENSG00000146453 PNLDC1 HsPNLDC1 PARN like, ribonuclease domain containing 1 protein-coding 451.5-13 chr2 133953858 133954091 + 3 NA Intergenic LOR1b|LTR|ERV1 -165961 NM_001371457 355-32 chr5 83939539 83939763 + 3 NA TTS (NM_005711) TTS (NM_005711) -218796 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 306-34 chr8 28912475 28912600 + 3 NA intron (NM_024567, intron 2 of 10) L2c|LINE|L2 21223 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 576-19 chr8 119711473 119711715 + 3 NA Intergenic L1MB8|LINE|L1 -38204 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 795-5 chr5 100020927 100021313 + 3 NA Intergenic Intergenic 367134 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 655-6 chr16 54764266 54764641 + 3 NA Intergenic AluSx1|SINE|Alu 83780 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 368.5-30 chr8 116706928 116707111 + 3 NA intron (NM_003756, intron 2 of 7) MER47A|DNA|TcMar-Tigger 48804 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 494-14 chr22 28637214 28637403 + 3 NA intron (NM_001145418, intron 1 of 22) AluY|SINE|Alu 42557 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 672-12 chr4 47990999 47991322 + 3 NA TTS (NR_125879) TTS (NR_125879) -9627 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 477-21 chr7 85067932 85068246 + 3 NA intron (NM_152754, intron 5 of 16) intron (NM_152754, intron 5 of 16) 53842 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 541.5-8 chr17 7247549 7247782 + 3 NA intron (NM_001143775, intron 1 of 7) AluSx4|SINE|Alu 4069 NM_001143775 23399 Hs.513913 NM_015343 ENSG00000175826 CTDNEP1 DULLARD|HSA011916|NET56 CTD nuclear envelope phosphatase 1 protein-coding 409-33 chr8 91749132 91749334 + 3 NA Intergenic L1MEc|LINE|L1 268447 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 699.5-9 chr7 19372923 19373279 + 3 NA Intergenic Intergenic -227680 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 892 chr1 103817463 103817966 + 3 NA Intergenic L1MA2|LINE|L1 67873 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 795-2 chr12 30499040 30499414 + 3 NA Intergenic Intergenic 178017 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 355-33 chr6 9627828 9628130 + 3 NA Intergenic MER72|LTR|ERV1 -776523 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 557-21 chr8 102265475 102265808 + 3 NA intron (NM_015902, intron 52 of 58) L1MEf|LINE|L1 26190 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 888-3 chr22 19434132 19434761 + 3 NA intron (NM_001318152, intron 1 of 2) AluSx|SINE|Alu 1507 NM_001318152 64976 Hs.431307 NM_003776 ENSG00000185608 MRPL40 L40mt|MRP-L22|MRP-L40|MRPL22|NLVCF|URIM mitochondrial ribosomal protein L40 protein-coding 352.5-15 chr2 110913564 110913734 + 3 NA intron (NM_001371254, intron 11 of 18) MSTB|LTR|ERVL-MaLR 181076 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 480-4 chr10 52334572 52334828 + 3 NA Intergenic Intergenic 20419 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 1099.5-3 chr2 124244811 124245344 + 3 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 219790 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 427-23 chr4 150700010 150700244 + 3 NA intron (NM_001367550, intron 36 of 56) Tigger4a|DNA|TcMar-Tigger 117976 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 532-13 chr5 95029681 95029941 + 3 NA intron (NM_024717, intron 1 of 22) L1PA17|LINE|L1 52055 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 316.5-13 chr2 57508130 57508292 + 3 NA Intergenic Intergenic -399440 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 382.5 chr1 62305007 62305158 + 3 NA intron (NM_181712, intron 1 of 9) intron (NM_181712, intron 1 of 9) 14352 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 650 chr1 59638889 59639160 + 3 NA intron (NM_001350794, intron 11 of 14) intron (NM_001350794, intron 11 of 14) 94272 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 372-22 chr2 45055224 45055474 + 3 NA Intergenic Intergenic -45897 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 604-8 chr12 48269465 48269717 + 3 NA Intergenic L1MC2|LINE|L1 -59389 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 426-32 chr4 275244 275407 + 3 NA intron (NM_001137608, intron 3 of 3) L1MB2|LINE|L1 30149 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 503-17 chr2 226551022 226551314 + 3 NA Intergenic Intergenic 107625 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 731-9 chr7 90484583 90484950 + 3 NA intron (NM_001365443, intron 2 of 6) MLT1K|LTR|ERVL-MaLR 15127 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 465-14 chr10 113858378 113858570 + 3 NA intron (NM_198514, intron 1 of 10) intron (NM_198514, intron 1 of 10) 3813 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 386-18 chr2 59782206 59782414 + 3 NA Intergenic L2b|LINE|L2 564602 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 360-13 chr11 75605125 75605385 + 3 NA 3' UTR (NM_207577, exon 3 of 3) 3' UTR (NM_207577, exon 3 of 3) 22059 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 473.5-10 chr3 103791675 103791899 + 3 NA Intergenic L1ME1|LINE|L1 -267671 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 457.5-19 chr22 30327865 30328123 + 3 NA Intergenic L1MB7|LINE|L1 -1053 NM_001204240 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 760-8 chr8 125087776 125088147 + 3 NA intron (NM_014846, intron 1 of 28) intron (NM_014846, intron 1 of 28) 3831 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 550-6 chr14 25849488 25849784 + 3 NA Intergenic MIRc|SINE|MIR 703794 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 219-34 chr7 73772177 73772283 + 3 NA Intergenic L1MA5A|LINE|L1 -1960 NM_001306 1365 Hs.647023 NM_001306 ENSG00000165215 CLDN3 C7orf1|CPE-R2|CPETR2|HRVP1|RVP1 claudin 3 protein-coding 363-36 chr8 120373192 120373365 + 3 NA 3' UTR (NM_021110, exon 48 of 48) 3' UTR (NM_021110, exon 48 of 48) 71872 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 903-2 chr9 33003842 33004247 + 3 NA intron (NM_001368996, intron 1 of 7) L1PB3|LINE|L1 -2403 NM_001195251 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 373.5-14 chr2 75298852 75299081 + 3 NA Intergenic L2|LINE|L2 -99446 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 684-2 chr10 133162388 133162725 + 3 NA intron (NM_001347866, intron 1 of 3) intron (NM_001347866, intron 1 of 3) 2337 NM_001347865 85442 Hs.530685 NM_152643 ENSG00000171798 KNDC1 C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND kinase non-catalytic C-lobe domain containing 1 protein-coding 588-30 chr6 69371634 69371948 + 3 NA intron (NM_001704, intron 29 of 31) intron (NM_001704, intron 29 of 31) 424675 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 790.5 chr11 24301419 24301756 + 3 NA Intergenic LTR37A|LTR|ERV1 -195466 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 639-2 chr10 88204863 88205262 + 3 NA Intergenic MIRb|SINE|MIR 341437 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 686-3 chr12 70733619 70734039 + 3 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 20779 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 409-21 chr3 69685356 69685548 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -54012 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 776-5 chr7 69320203 69320560 + 3 NA Intergenic Eulor8|DNA|TcMar? 277243 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 182.5-8 chr16 52085543 52085650 + 3 NA promoter-TSS (NR_038233) promoter-TSS (NR_038233) 315 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 543-17 chr8 112314326 112314562 + 3 NA exon (NM_198124, exon 49 of 72) exon (NM_198124, exon 49 of 72) -329049 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 326.5-14 chr14 61725707 61725908 + 3 NA intron (NM_181054, intron 4 of 13) intron (NM_181054, intron 4 of 13) 23282 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 566-9 chr2 72330451 72330686 + 3 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -182706 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 371-6 chr15 69283892 69284262 + 3 NA Intergenic Intergenic -14835 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 430.5-3 chr1 145993888 145994303 + 3 NA exon (NM_001313972, exon 6 of 7) exon (NM_001313972, exon 6 of 7) 1649 NM_001313972 10628 Hs.533977 NM_006472 ENSG00000265972 TXNIP ARRDC6|EST01027|HHCPA78|THIF|VDUP1 thioredoxin interacting protein protein-coding 560-21 chr6 91748043 91748279 + 3 NA Intergenic Intergenic -57733 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 752 chr1 161777337 161777651 + 3 NA intron (NM_007348, intron 1 of 15) intron (NM_007348, intron 1 of 15) 11174 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 508-23 chr3 192217353 192217728 + 3 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -21090 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 360.5-20 chr4 147074995 147075193 + 3 NA Intergenic Intergenic -129208 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 691.5-5 chr2 48949401 48949748 + 3 NA Intergenic L1MEh|LINE|L1 -110029 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 329.5-16 chr3 89583735 89583855 + 3 NA Intergenic Intergenic 476174 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 445-8 chr15 81419835 81420147 + 3 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -45778 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 389-17 chr16 13750240 13750446 + 3 NA Intergenic Intergenic -169814 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 632-11 chr5 75567992 75568223 + 3 NA intron (NM_016218, intron 3 of 14) intron (NM_016218, intron 3 of 14) -43369 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 726.5-6 chr8 126421716 126422128 + 3 NA Intergenic Intergenic 96427 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 478-7 chr12 44373122 44373327 + 3 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 502437 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 547.5-12 chr6 25709349 25709848 + 3 NA Intergenic AluSx1|SINE|Alu 16964 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 449-13 chr15 91602785 91603052 + 3 NA Intergenic Intergenic 139579 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 452-19 chr3 31816702 31816876 + 3 NA intron (NM_001174060, intron 3 of 10) MER52C|LTR|ERV1 112576 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 531-11 chr16 9135574 9135923 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 44104 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 630-7 chr12 73782067 73782375 + 3 NA Intergenic L1MD2|LINE|L1 510410 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 421-35 chr7 42730683 42731003 + 3 NA Intergenic Intergenic -24396 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 490-18 chr3 6791963 6792228 + 3 NA intron (NR_110125, intron 1 of 3) intron (NR_110125, intron 1 of 3) 13354 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 432-26 chr7 49098285 49098568 + 3 NA Intergenic L1MA2|LINE|L1 173879 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 839-2 chr1 38181918 38182518 + 3 NA Intergenic MIRb|SINE|MIR 32549 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 336-28 chr18 71971382 71971536 + 3 NA Intergenic L1MD|LINE|L1 -189233 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 451-20 chr7 8725568 8725822 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 292086 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 362-10 chr14 72851684 72851889 + 3 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 40863 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 495-13 chr21 29237508 29237756 + 3 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 44138 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 434-5 chr16 52634349 52634624 + 3 NA Intergenic Intergenic -27511 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 444-34 chr8 136314643 136314857 + 3 NA Intergenic Intergenic -216048 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 427.5-17 chr22 39959952 39960130 + 3 NA intron (NM_001291825, intron 2 of 6) intron (NM_001291825, intron 2 of 6) 13224 NM_001291825 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 292.5-29 chr7 95860537 95860684 + 3 NA intron (NM_004411, intron 5 of 16) intron (NM_004411, intron 5 of 16) 88104 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 1033.5 chr2 63822206 63822853 + 3 NA Intergenic Intergenic -18435 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 928-4 chr4 74350071 74350576 + 3 NA Intergenic Intergenic -14822 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 288-12 chr14 50511613 50511726 + 3 NA intron (NM_198794, intron 2 of 31) L1MA5A|LINE|L1 20900 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 305-7 chr11 16299061 16299209 + 3 NA intron (NM_033326, intron 3 of 15) intron (NM_033326, intron 3 of 15) 57411 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 594-7 chr19 29148808 29149172 + 3 NA Intergenic L2a|LINE|L2 64161 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 648-17 chrX 24319033 24319406 + 3 NA Intergenic Intergenic -5826 NM_001136233 170067 Hs.716893 NM_001136233 SUPT20HL2 FAM48B1|FAM48B2 SUPT20H like 2 protein-coding 492-30 chr8 130479340 130479608 + 3 NA Intergenic MIRc|SINE|MIR -35800 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 438-18 chr2 69922803 69923068 + 3 NA intron (NM_001202513, intron 3 of 5) L1MC5a|LINE|L1 7826 NM_002357 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 553-2 chr1 12742885 12743174 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack -3171 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 421.5-26 chr7 95975204 95975362 + 3 NA intron (NM_004411, intron 6 of 16) MLT1C|LTR|ERVL-MaLR 202777 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 404.5-17 chr3 170658276 170658466 + 3 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -72296 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 682.5-8 chr5 35390646 35391060 + 3 NA Intergenic Intergenic -160366 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 804.5-5 chrUn_KI270438v1 104326 104959 + 3 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 658.5-13 chr8 129192639 129193034 + 3 NA Intergenic MIRb|SINE|MIR 48404 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 655.5-10 chr3 115964805 115965208 + 3 NA intron (NM_001318915, intron 3 of 8) L1ME3E|LINE|L1 -59880 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 696-10 chr3 178767591 178768063 + 3 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 92578 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 760.5-7 chr5 31965280 31965555 + 3 NA intron (NM_178140, intron 2 of 24) LTR9B|LTR|ERV1 -29258 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 345-15 chr18 11515396 11515568 + 3 NA Intergenic Intergenic 25434 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 571-22 chr8 51665477 51665878 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 143768 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 317-23 chr6 65603537 65603761 + 3 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -23845 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 395-33 chr7 35630588 35630729 + 3 NA Intergenic Intergenic 64477 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 510-9 chr14 64739396 64739695 + 3 NA intron (NM_001308147, intron 15 of 16) intron (NM_001308147, intron 15 of 16) 35121 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 458-21 chr3 107533056 107533354 + 3 NA intron (NM_001276286, intron 2 of 16) MER46C|DNA|TcMar-Tigger 10243 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 689-6 chr17 71492897 71493168 + 3 NA Intergenic Intergenic -290853 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 318-37 chr6 121031031 121031209 + 3 NA Intergenic L1MC3|LINE|L1 303360 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 236.5-3 chr1 114914237 114914344 + 3 NA intron (NM_001282542, intron 20 of 30) intron (NM_001282542, intron 20 of 30) 59427 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 672.5-6 chr8 42111114 42111514 + 3 NA Intergenic Intergenic -41632 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 403-13 chr12 46708575 46708904 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 117258 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 450.5-5 chr17 32845903 32846253 + 3 NA intron (NM_015194, intron 1 of 21) MLT1L|LTR|ERVL-MaLR 31046 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 393-25 chr22 26068422 26068682 + 3 NA Intergenic Intergenic -100910 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 461.5-9 chr19 29721342 29721792 + 3 NA Intergenic Intergenic -5778 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 516-4 chr10 81616898 81617195 + 3 NA Intergenic L1M2|LINE|L1 -258148 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 372 chr1 74535008 74535184 + 3 NA intron (NM_015978, intron 23 of 24) intron (NM_015978, intron 23 of 24) -22482 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 471-14 chr14 103457573 103457825 + 3 NA intron (NM_001128920, intron 6 of 15) intron (NM_001128920, intron 6 of 15) 65131 NM_001823 1152 Hs.173724 NM_001823 ENSG00000166165 CKB B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29 creatine kinase B protein-coding 682.5-2 chr11 118297167 118297468 + 3 NA Intergenic L1MA1|LINE|L1 -7263 NM_000733 916 Hs.3003 NM_000733 ENSG00000198851 CD3E IMD18|T3E|TCRE CD3e molecule protein-coding 428-10 chr14 46278102 46278274 + 3 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -193171 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 632-4 chr11 13501391 13501789 + 3 NA Intergenic Intergenic -5415 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 445.5-11 chr2 162746462 162746662 + 3 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -22374 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 443.5-14 chr6 12489380 12489553 + 3 NA Intergenic Intergenic 95938 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 507-25 chr4 112695015 112695222 + 3 NA Intergenic AluJb|SINE|Alu -10900 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 291.5-14 chr2 212451181 212451453 + 3 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -24957 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 621-3 chr12 112410835 112411142 + 3 NA intron (NM_001320142, intron 1 of 6) intron (NM_001320142, intron 1 of 6) 454 NM_001320142 6128 Hs.528668 NM_000970 ENSG00000089009 RPL6 L6|SHUJUN-2|TAXREB107|TXREB1 ribosomal protein L6 protein-coding 411-8 chr10 72883121 72883360 + 3 NA intron (NM_138357, intron 6 of 7) L1MB8|LINE|L1 -10499 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 408.5-8 chr17 60935274 60935506 + 3 NA intron (NM_001330413, intron 13 of 25) intron (NM_001330413, intron 13 of 25) 257539 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 523.5-2 chr12 1969914 1970366 + 3 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) -33564 NR_036546 100271702 Hs.737031 NR_036546 ENSG00000235049 LINC00940 - long intergenic non-protein coding RNA 940 ncRNA 969 chr18 13808346 13808747 + 3 NA Intergenic LTR108c_Mam|LTR|ERVL -15603 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 666-6 chr12 64432697 64432988 + 3 NA intron (NM_007235, intron 18 of 24) intron (NM_007235, intron 18 of 24) -19278 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 824.5-2 chr3 119271872 119272352 + 3 NA intron (NR_046574, intron 3 of 3) L1PA8|LINE|L1 -22271 NM_020754 57514 Hs.668218 NM_020754 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 519-9 chr17 56339170 56339536 + 3 NA intron (NM_001370326, intron 4 of 20) L1PA13|LINE|L1 185878 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 455-36 chr8 137103910 137104169 + 3 NA Intergenic Intergenic 309549 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 198-21 chr7 69858830 69858950 + 3 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 260415 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 602-17 chr5 62258168 62258756 + 3 NA Intergenic L2c|LINE|L2 -47700 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 358-24 chr19 30256842 30257040 + 3 NA Intergenic Intergenic -115443 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 495 chr1 119488755 119488961 + 3 NA Intergenic LTR19-int|LTR|ERV1 -18345 NM_001328615 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 417-25 chr20 25596732 25596935 + 3 NA Intergenic L1MC3|LINE|L1 -11302 NM_001318226 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 361.5-21 chr3 108526876 108527081 + 3 NA intron (NM_014981, intron 1 of 41) intron (NM_014981, intron 1 of 41) 2344 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 486-5 chr10 60166418 60166628 + 3 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -25507 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 724.5-3 chr11 73889455 73889769 + 3 NA intron (NM_001363556, intron 1 of 9) intron (NM_001363556, intron 1 of 9) 831 NM_001363556 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 494-22 chr9 78680051 78680335 + 3 NA Intergenic Intergenic 383068 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 415-13 chr14 51914256 51914407 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 4240 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 744.5-3 chr7 36707623 36707872 + 3 NA intron (NM_001637, intron 1 of 20) L1M4a1|LINE|L1 16747 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 621-15 chr4 105789331 105789616 + 3 NA intron (NM_001370181, intron 5 of 11) MLT1F2|LTR|ERVL-MaLR 37699 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 892-3 chr17 26883717 26884397 + 3 NA Intergenic ALR/Alpha|Satellite|centr 205184 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 834-4 chr8 64101446 64101876 + 3 NA intron (NR_125826, intron 4 of 4) MIR|SINE|MIR 266897 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 456-29 chr6 125213217 125213480 + 3 NA intron (NM_001318907, intron 1 of 4) intron (NM_001318907, intron 1 of 4) 9637 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 474-19 chr4 29716511 29716695 + 3 NA Intergenic Intergenic 502311 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 580-10 chr2 152341428 152341649 + 3 NA intron (NM_052905, intron 1 of 25) MIR3|SINE|MIR 6364 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 397.5-20 chr3 17002311 17002543 + 3 NA intron (NM_015184, intron 1 of 5) L1MA4|LINE|L1 69231 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 664-8 chr8 35608323 35608851 + 3 NA intron (NM_001322818, intron 4 of 16) L1PB4|LINE|L1 64195 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 731-8 chr6 169486917 169487307 + 3 NA intron (NR_146875, intron 19 of 20) MIR|SINE|MIR 214917 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 720-3 chr2 63386949 63387385 + 3 NA intron (NR_148704, intron 11 of 18) L1PREC2|LINE|L1 50840 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 532-18 chr8 139720557 139720943 + 3 NA Intergenic L1ME3D|LINE|L1 -17627 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 471-6 chr10 63716820 63717050 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -195045 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 265-5 chr10 76354714 76354817 + 3 NA intron (NM_001305581, intron 6 of 6) L1MA4|LINE|L1 -533279 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 650-8 chr3 130977558 130977788 + 3 NA intron (NM_001001485, intron 18 of 27) intron (NM_001001485, intron 18 of 27) 49181 NM_014065 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 436-17 chr2 96656030 96656371 + 3 NA intron (NM_001293083, intron 9 of 52) L1MC5|LINE|L1 13436 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 399-33 chr6 14162910 14163108 + 3 NA Intergenic Intergenic 45237 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 736-6 chr17 58781612 58782044 + 3 NA intron (NM_014906, intron 1 of 6) AluSx|SINE|Alu 25959 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 579-2 chr10 86519597 86519937 + 3 NA intron (NM_001318328, intron 1 of 18) intron (NM_001318328, intron 1 of 18) 2017 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 523-24 chr5 168138175 168138402 + 3 NA intron (NM_001368145, intron 11 of 26) MIRb|SINE|MIR -27557 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 457-6 chr16 53081998 53082166 + 3 NA intron (NM_025134, intron 1 of 38) intron (NM_025134, intron 1 of 38) 27091 NM_025134 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 635-2 chr1 94665451 94665788 + 3 NA intron (NR_104131, intron 4 of 4) MER4-int|LTR|ERV1 80281 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 459-2 chr10 43172356 43172546 + 3 NA intron (NM_018590, intron 6 of 7) MIR|SINE|MIR 17554 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 430 chr1 31401712 31401931 + 3 NA Intergenic L1ME4a|LINE|L1 -7956 NM_001199038 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 358.5-3 chr1 247683600 247683805 + 3 NA Intergenic L1MA8|LINE|L1 -10661 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 562-8 chr21 25992950 25993238 + 3 NA intron (NM_001136131, intron 6 of 15) intron (NM_001136131, intron 6 of 15) 147296 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 874.5 chr1 115861542 115862158 + 3 NA Intergenic L2c|LINE|L2 -20724 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 451-25 chr8 42232230 42232541 + 3 NA Intergenic MER31-int|LTR|ERV1 -24820 NM_001319189 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 292.5-26 chr6 9203461 9203613 + 3 NA Intergenic Intergenic 551328 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 604.5-7 chr2 191115979 191116324 + 3 NA intron (NM_003151, intron 3 of 23) MamRTE1|LINE|RTE-BovB 34843 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 466-15 chr17 70632122 70632288 + 3 NA Intergenic Intergenic 462670 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 288-24 chr20 49182064 49182186 + 3 NA intron (NM_004602, intron 1 of 13) intron (NM_004602, intron 1 of 13) 6245 NM_017453 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 445.5-6 chr15 93929045 93929231 + 3 NA intron (NR_120320, intron 8 of 8) intron (NR_120320, intron 8 of 8) 28437 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 317-9 chr15 97970529 97970761 + 3 NA exon (NM_183376, exon 7 of 8) exon (NM_183376, exon 7 of 8) 9942 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 703.5-6 chr9 135410188 135410422 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 61944 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 367-10 chr11 103368098 103368368 + 3 NA intron (NM_001377, intron 83 of 88) L1MA6|LINE|L1 258807 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 441-3 chr1 186569292 186569573 + 3 NA Intergenic Intergenic -108318 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 656-3 chr12 55751679 55752035 + 3 NA TTS (NR_026722) TTS (NR_026722) 8735 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 520-3 chr10 113074119 113074442 + 3 NA intron (NM_001198528, intron 4 of 14) intron (NM_001198528, intron 4 of 14) 28925 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 702-4 chr12 127438385 127438671 + 3 NA Intergenic Intergenic -98456 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 460-9 chr16 61830661 61830992 + 3 NA intron (NM_001796, intron 4 of 11) intron (NM_001796, intron 4 of 11) 205612 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 725-5 chr2 50307321 50307621 + 3 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 40283 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 665-13 chr8 137617668 137617975 + 3 NA Intergenic Intergenic -204233 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 602-12 chr2 44534967 44535176 + 3 NA intron (NM_024766, intron 3 of 10) L1PB2|LINE|L1 173124 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 523.5-13 chr5 36528307 36528618 + 3 NA Intergenic Intergenic -77893 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 465-16 chr11 35713963 35714215 + 3 NA intron (NM_017583, intron 2 of 4) intron (NM_017583, intron 2 of 4) 51314 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 527-15 chr2 62124593 62124911 + 3 NA intron (NM_001321781, intron 2 of 2) AluSz6|SINE|Alu -71363 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 201-14 chr2 106130582 106130680 + 3 NA intron (NM_025076, intron 6 of 14) intron (NM_025076, intron 6 of 14) 8250 NM_001253876 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 834.5-3 chr15 70780174 70780566 + 3 NA Intergenic MER4A1|LTR|ERV1 -16812 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 712.5-8 chr4 159783552 159783873 + 3 NA Intergenic Intergenic -5928 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 588-25 chr20 20551956 20552258 + 3 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 160537 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 563 chr10 30221464 30221742 + 3 NA intron (NR_120653, intron 2 of 2) intron (NR_120653, intron 2 of 2) 9751 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 851-2 chr2 75186319 75186745 + 3 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 12988 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 522-35 chr8 134509748 134510106 + 3 NA intron (NM_020863, intron 14 of 15) MIRc|SINE|MIR -88144 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 835.5 chr20 5184587 5185126 + 3 NA intron (NM_003818, intron 7 of 12) intron (NM_003818, intron 7 of 12) 57848 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 523.5-9 chr2 125645771 125645973 + 3 NA Intergenic L1M4|LINE|L1 472113 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 854-8 chr4 123192407 123192839 + 3 NA intron (NM_001345856, intron 14 of 15) MER3|DNA|hAT-Charlie -204172 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 272-12 chr15 59043362 59043485 + 3 NA intron (NM_001270529, intron 2 of 13) AluSx1|SINE|Alu 55277 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 961-2 chr3 49164576 49164988 + 3 NA intron (NM_022903, intron 1 of 1) L2c|LINE|L2 1549 NM_022903 64925 Hs.211472 NM_022903 ENSG00000177352 CCDC71 - coiled-coil domain containing 71 protein-coding 505-3 chr11 47912423 47912775 + 3 NA Intergenic FLAM_C|SINE|Alu -64055 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 506-19 chr3 133297854 133298387 + 3 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -40999 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 424-13 chr21 30842256 30842456 + 3 NA Intergenic Intergenic -12597 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 793-2 chr15 65819463 65819776 + 3 NA Intergenic Intergenic -27326 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 466-19 chr21 32170556 32170742 + 3 NA Intergenic L1M4a2|LINE|L1 -84354 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 944.5-2 chr5 102142389 102142736 + 3 NA Intergenic L2c|LINE|L2 153722 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 368-4 chr11 21399514 21399697 + 3 NA intron (NM_201551, intron 15 of 18) MIR|SINE|MIR 730019 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 467-17 chr2 230452319 230452549 + 3 NA intron (NM_001080391, intron 8 of 28) AluSq2|SINE|Alu 35678 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 647-13 chr3 186784152 186784468 + 3 NA promoter-TSS (NR_002587) promoter-TSS (NR_002587) -486 NR_002587 619567 NR_002587 ENSG00000238942 SNORD2 R39B|SNR39B small nucleolar RNA, C/D box 2 snoRNA 365.5-4 chr11 71342248 71342465 + 3 NA Intergenic Intergenic 80998 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 320.5-28 chr6 81590131 81590237 + 3 NA Intergenic MER50|LTR|ERV1 162497 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 538 chr10 93598353 93598658 + 3 NA intron (NM_006744, intron 4 of 5) intron (NM_006744, intron 4 of 5) 2730 NM_006744 5950 Hs.50223 NM_006744 ENSG00000138207 RBP4 MCOPCB10|RDCCAS retinol binding protein 4 protein-coding 609-21 chr8 90088433 90088796 + 3 NA Intergenic Intergenic -5735 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 919-4 chr2 97946248 97946630 + 3 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 49509 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 363-23 chr5 22761697 22761852 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 91570 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 490-11 chr16 14192603 14192884 + 3 NA intron (NM_001365411, intron 1 of 14) intron (NM_001365411, intron 1 of 14) 6057 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 744-7 chr17 57814061 57814448 + 3 NA Intergenic Intergenic 35790 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 406.5-22 chr5 4244531 4244717 + 3 NA Intergenic Intergenic -528857 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 495-19 chr7 110063219 110063481 + 3 NA Intergenic L1MEd|LINE|L1 -103137 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 668-15 chrX 146567392 146567697 + 3 NA Intergenic L2-3_Crp|LINE|L2 -242227 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 411-23 chr2 234481769 234481916 + 3 NA Intergenic L1MB7|LINE|L1 15207 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 588-22 chr2 236474762 236475276 + 3 NA intron (NR_073043, intron 5 of 19) L1MA4|LINE|L1 28678 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 286-18 chr20 35183692 35183947 + 3 NA intron (NM_001355008, intron 4 of 14) L1M4|LINE|L1 11747 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 313-25 chr4 33229663 33229841 + 3 NA Intergenic LTR24C|LTR|ERV1 810141 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 314.5-19 chr2 143281285 143281389 + 3 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 151918 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 890-3 chr2 42052418 42052815 + 3 NA intron (NM_138370, intron 1 of 6) AluSz|SINE|Alu 4595 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 587.5-14 chr2 182667763 182668157 + 3 NA Intergenic Intergenic -48297 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 558.5-8 chr14 67369192 67369587 + 3 NA intron (NM_004094, intron 2 of 7) L1MEb|LINE|L1 9061 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 439.5-16 chr2 79386091 79386273 + 3 NA Intergenic Intergenic 114662 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 346-28 chr4 111294369 111294554 + 3 NA Intergenic L1MA3|LINE|L1 -433814 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 351-4 chr10 65297713 65297894 + 3 NA Intergenic Intergenic -273622 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 594-3 chr10 82203601 82203880 + 3 NA intron (NM_001165973, intron 2 of 10) MamRep605|LTR?|LTR? 29180 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 544.5 chr1 235045245 235045512 + 3 NA Intergenic Intergenic 24440 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 661-7 chr3 9205045 9205475 + 3 NA intron (NM_014850, intron 1 of 21) MER33|DNA|hAT-Charlie -11635 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 295-23 chr2 36372551 36372651 + 3 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 16823 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 411-20 chr2 143871671 143871966 + 3 NA Intergenic AluSz|SINE|Alu -65249 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 234-23 chr6 152779033 152779126 + 3 NA Intergenic L1MA6|LINE|L1 28282 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 430-35 chr7 65238331 65238517 + 3 NA Intergenic Intergenic 97394 NR_146906 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 402-12 chr12 50582932 50583157 + 3 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 78059 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 387-27 chr5 23393224 23393446 + 3 NA Intergenic Intergenic -114274 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 530-5 chr1 194898722 194899063 + 3 NA Intergenic Intergenic 1189823 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 461-30 chr7 31748320 31748551 + 3 NA Intergenic Intergenic 61220 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 351-41 chr8 127172093 127172247 + 3 NA Intergenic Intergenic 25457 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 614-3 chr11 63536524 63536831 + 3 NA promoter-TSS (NM_004585) promoter-TSS (NM_004585) -131 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 PLAAT4 HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3 phospholipase A and acyltransferase 4 protein-coding 571.5-9 chr7 679317 679596 + 3 NA intron (NM_001164760, intron 3 of 10) L1MC3|LINE|L1 33068 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 466-31 chr8 109025137 109025408 + 3 NA Intergenic Intergenic -61356 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 507-16 chr22 28740195 28740530 + 3 NA intron (NM_001257387, intron 1 of 15) LTR62|LTR|ERVL 1458 NM_001005735 11200 Hs.291363 NM_007194 ENSG00000183765 CHEK2 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 checkpoint kinase 2 protein-coding 384-22 chr3 84579127 84579334 + 3 NA Intergenic L1M3|LINE|L1 290345 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 461-2 chr1 207107165 207107487 + 3 NA intron (NM_000715, intron 1 of 11) AluJr|SINE|Alu 3093 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 533-10 chr12 95282087 95282300 + 3 NA intron (NR_147922, intron 8 of 12) intron (NR_147922, intron 8 of 12) -26227 NR_029895 442903 NR_029895 ENSG00000199172 MIR331 MIRN331|hsa-mir-331|mir-331 microRNA 331 ncRNA 964 chr5 84598466 84599063 + 3 NA Intergenic L1M8|LINE|L1 -213884 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 396.5-23 chr3 3607999 3608238 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -191313 NM_001324188 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 377-21 chr3 32078182 32078350 + 3 NA Intergenic Intergenic -28245 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 526-21 chr8 139315095 139315559 + 3 NA Intergenic MER96|DNA|hAT-Tip100 387796 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 466-4 chr1 90161243 90161486 + 3 NA Intergenic Intergenic 166254 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 410-28 chr6 35448489 35448731 + 3 NA Intergenic AluJb|SINE|Alu -3751 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 364.5-18 chr3 94683838 94684019 + 3 NA Intergenic Intergenic -254335 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 528-20 chr20 519719 520049 + 3 NA intron (NM_001362771, intron 1 of 13) L1ME1|LINE|L1 23906 NM_177559 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 313.5-44 chr8 142531025 142531169 + 3 NA intron (NM_001702, intron 24 of 30) intron (NM_001702, intron 24 of 30) 81448 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 349-3 chr1 89187913 89188075 + 3 NA intron (NM_052941, intron 8 of 10) MIR|SINE|MIR 10948 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 431-2 chr1 97461727 97462021 + 3 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -335047 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 499-18 chr5 128815280 128815527 + 3 NA Intergenic Intergenic -149724 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 541.5-9 chr17 61776332 61776621 + 3 NA exon (NM_032043, exon 14 of 20) exon (NM_032043, exon 14 of 20) 87083 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 487-3 chr1 108826912 108827227 + 3 NA intron (NM_152763, intron 11 of 15) intron (NM_152763, intron 11 of 15) 30025 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 803-3 chr14 44002863 44003291 + 3 NA Intergenic L1M4|LINE|L1 504206 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 543-4 chr14 59073280 59073562 + 3 NA Intergenic Intergenic -115246 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 545-13 chr17 78588171 78588491 + 3 NA Intergenic PRIMA4_LTR|LTR|ERV1 -10937 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 434-9 chr18 2473867 2474154 + 3 NA Intergenic Intergenic 97495 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 592-8 chr18 21826056 21826432 + 3 NA promoter-TSS (NR_029675) promoter-TSS (NR_029675) -459 NR_029675 406922 NR_029675 ENSG00000283927 MIR133A1 MIRN133A1|mir-133a-1 microRNA 133a-1 ncRNA 303-6 chr10 49279027 49279296 + 3 NA Intergenic Intergenic 19732 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 522-25 chr3 180867351 180867585 + 3 NA intron (NR_109986, intron 1 of 13) L1MB8|LINE|L1 2710 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 431-25 chr5 58096940 58097132 + 3 NA Intergenic Intergenic 25305 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 342-19 chr2 104934039 104934214 + 3 NA Intergenic Intergenic -61531 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 576-15 chr4 74532682 74533051 + 3 NA Intergenic Intergenic 87730 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 438-11 chr14 83543453 83543727 + 3 NA Intergenic Intergenic 900958 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 490-6 chr13 38473697 38474058 + 3 NA Intergenic Intergenic -93847 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 309-41 chr7 111832187 111832351 + 3 NA intron (NM_001363540, intron 26 of 52) L2b|LINE|L2 23764 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 639-13 chr4 45089443 45089756 + 3 NA Intergenic Intergenic -362965 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 635-6 chr16 81223214 81223710 + 3 NA Intergenic Intergenic -3068 NM_052892 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 392-31 chr6 156079139 156079299 + 3 NA Intergenic Intergenic 132422 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 468-33 chr5 18454256 18454494 + 3 NA Intergenic Intergenic 647101 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 518.5-12 chr2 29844236 29844647 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 77145 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 572-14 chr3 167150317 167150605 + 3 NA Intergenic Intergenic 229822 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 831 chr14 59378779 59379235 + 3 NA Intergenic Intergenic 86373 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 713.5 chr13 30724086 30724341 + 3 NA intron (NM_001204406, intron 1 of 5) L1ME1|LINE|L1 10735 NM_001204406 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 459.5-14 chr22 39527878 39528045 + 3 NA Intergenic Intergenic 4787 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 267-18 chr2 29289423 29289586 + 3 NA intron (NM_004304, intron 9 of 28) intron (NM_004304, intron 9 of 28) -65604 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 359-6 chr10 49165266 49165457 + 3 NA exon (NM_001288743, exon 5 of 7) exon (NM_001288743, exon 5 of 7) 23030 NM_001288741 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 430.5-10 chr11 59437849 59438043 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -5223 NM_001004728 219982 Hs.553649 NM_001004728 ENSG00000172320 OR5A1 OR11-249|OR5A1P|OST181 olfactory receptor family 5 subfamily A member 1 protein-coding 477-13 chr21 31638181 31638379 + 3 NA Intergenic L1MB3|LINE|L1 -21342 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 480-11 chr14 79327041 79327356 + 3 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 47818 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 698-2 chr1 236502643 236502938 + 3 NA Intergenic Intergenic -15424 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 467-5 chr10 64105451 64105701 + 3 NA Intergenic LTR33|LTR|ERVL -583686 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 637-13 chr8 64755919 64756280 + 3 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 42638 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 605-3 chr14 64660879 64661128 + 3 NA Intergenic L1MC4|LINE|L1 -43421 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 478.5-2 chr10 86033213 86033464 + 3 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 231450 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 513-15 chr19 29652111 29652412 + 3 NA Intergenic AluJb|SINE|Alu -13200 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 630-21 chr9 72396557 72396848 + 3 NA Intergenic Intergenic -31494 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 786-6 chr2 217326718 217327173 + 3 NA intron (NR_026597, intron 9 of 12) MIRb|SINE|MIR 44212 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 370-21 chr20 37547899 37548044 + 3 NA Intergenic L1M5|LINE|L1 -20040 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 391.5-38 chr8 87951284 87951440 + 3 NA Intergenic Intergenic -77347 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 333-29 chr4 150314730 150314896 + 3 NA intron (NM_001367550, intron 51 of 56) intron (NM_001367550, intron 51 of 56) 236368 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 479.5-18 chr7 104062921 104063227 + 3 NA Intergenic Intergenic -73416 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 395-8 chr15 59292272 59292469 + 3 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 80501 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 692-11 chr9 134162595 134163126 + 3 NA Intergenic Intergenic 1704 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 565.5-4 chr12 73558898 73559145 + 3 NA Intergenic L1PA16|LINE|L1 399831 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 337.5-21 chr3 8059307 8059524 + 3 NA Intergenic L1P2|LINE|L1 -43108 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 704-10 chr9 36676352 36676703 + 3 NA intron (NM_001256691, intron 15 of 15) intron (NM_001256691, intron 15 of 15) 103632 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 214.5-9 chr16 63717549 63717665 + 3 NA Intergenic Intergenic 1404456 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 822-7 chr5 117122633 117123063 + 3 NA Intergenic Intergenic -292664 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 685 chr1 21038300 21038580 + 3 NA intron (NM_003760, intron 2 of 31) intron (NM_003760, intron 2 of 31) -50008 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 467.5-20 chr7 99257728 99257888 + 3 NA Intergenic AluJr|SINE|Alu -15493 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 417-9 chr11 63858107 63858276 + 3 NA intron (NM_001163296, intron 1 of 16) AluSz6|SINE|Alu 19081 NM_001163296 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 574-5 chr13 60530728 60531024 + 3 NA intron (NM_030794, intron 11 of 13) L2|LINE|L2 133656 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 600-21 chr8 134114254 134114524 + 3 NA Intergenic Intergenic 227893 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 414.5-15 chr22 21762454 21762606 + 3 NA 3' UTR (NM_002745, exon 9 of 9) 3' UTR (NM_002745, exon 9 of 9) -26736 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 384-16 chr2 99965871 99966105 + 3 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 139595 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 329-22 chr3 142899840 142900036 + 3 NA Intergenic AluJb|SINE|Alu -10855 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 1299.5 chr4 49149154 49149873 + 3 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162871 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 604-6 chr11 120161214 120161456 + 3 NA Intergenic L1MEf|LINE|L1 -7642 NR_159965 107984399 Hs.638417 NR_159965 LOC107984399 - uncharacterized LOC107984399 ncRNA 630.5-4 chr12 14701858 14702094 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -5377 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 610 chr1 54262862 54263093 + 3 NA intron (NM_018070, intron 5 of 16) intron (NM_018070, intron 5 of 16) 26534 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 621 chr1 92136901 92137297 + 3 NA intron (NM_183242, intron 5 of 8) L2c|LINE|L2 -31825 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 617-8 chr6 156049392 156049672 + 3 NA Intergenic Intergenic 102735 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 789-4 chr4 43605248 43605743 + 3 NA Intergenic Intergenic -112952 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 492.5-9 chr17 32365775 32366069 + 3 NA intron (NM_001032293, intron 8 of 10) intron (NM_001032293, intron 8 of 10) 15784 NM_001098507 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 272-29 chr5 18440798 18440898 + 3 NA Intergenic AluJr|SINE|Alu 633574 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 484.5-27 chrX 87497501 87497843 + 3 NA Intergenic L1PA16|LINE|L1 -20130 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 428-15 chr2 120960822 120961035 + 3 NA intron (NM_005270, intron 5 of 13) intron (NM_005270, intron 5 of 13) 168647 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 838.5-5 chr4 127813332 127813733 + 3 NA intron (NM_001317383, intron 11 of 17) intron (NM_001317383, intron 11 of 17) 30009 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 574.5-11 chr3 6879281 6879561 + 3 NA intron (NM_000844, intron 1 of 9) L1MA7|LINE|L1 14596 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 379-25 chr2 141550812 141550975 + 3 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 580808 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 557.5-5 chr16 4206482 4206730 + 3 NA intron (NM_001098814, intron 1 of 5) intron (NM_001098814, intron 1 of 5) 35474 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 547-9 chr2 18247631 18247956 + 3 NA Intergenic MIR|SINE|MIR 312860 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 934.5-2 chr20 51783662 51784271 + 3 NA 3' UTR (NM_020436, exon 4 of 4) 3' UTR (NM_020436, exon 4 of 4) -15576 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 463.5-3 chr12 2300670 2300849 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 30983 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 716-2 chr12 2172742 2173093 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 50564 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 266.5-27 chr8 14987109 14987238 + 3 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -133663 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 309-36 chr5 83418530 83418770 + 3 NA Intergenic Intergenic -53024 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 390-31 chr9 36641009 36641194 + 3 NA intron (NM_001256691, intron 8 of 15) L3|LINE|CR1 68206 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 588-20 chr2 78844101 78844442 + 3 NA Intergenic L1MD1|LINE|L1 -181431 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 428-18 chr3 29252009 29252175 + 3 NA Intergenic Intergenic 28847 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 514-23 chr8 137042485 137042710 + 3 NA Intergenic Intergenic 370991 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 252.5-17 chr20 10941260 10941429 + 3 NA Intergenic Intergenic -32072 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 425-18 chr14 58674450 58674634 + 3 NA Intergenic L1MC4a|LINE|L1 35705 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 569 chr1 71748055 71748388 + 3 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 88791 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 475.5-10 chr2 81072653 81072861 + 3 NA Intergenic L1MDa|LINE|L1 394189 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 721-6 chr6 114603364 114603793 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -540701 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 634.5-13 chr5 179727569 179727888 + 3 NA intron (NM_001024649, intron 14 of 14).2 L2a|LINE|L2 -5094 NM_014757 9794 Hs.631951 NM_014757 ENSG00000161021 MAML1 Mam-1|Mam1 mastermind like transcriptional coactivator 1 protein-coding 434-22 chr6 56354086 56354416 + 3 NA intron (NM_001318752, intron 1 of 28) L1ME3|LINE|L1 39877 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 489-34 chr8 120409107 120409427 + 3 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 35883 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 520 chr1 241605467 241605754 + 3 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 30320 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 281-26 chr3 30581919 30582030 + 3 NA Intergenic Intergenic -24528 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 598-6 chr22 27588226 27588623 + 3 NA Intergenic Intergenic 213332 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 586.5-9 chr17 67181764 67182038 + 3 NA intron (NM_001330447, intron 12 of 32) intron (NM_001330447, intron 12 of 32) -62875 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 350-10 chr16 6495899 6496015 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -277852 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 439.5-19 chr3 161625768 161626002 + 3 NA Intergenic MER92-int|LTR|ERV1 129077 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 552.5-18 chr5 68012521 68013000 + 3 NA Intergenic Intergenic -177116 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 545-16 chr2 232197645 232197895 + 3 NA intron (NR_046477, intron 8 of 18) AluSc|SINE|Alu 25117 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 501.5-16 chr22 33435548 33435785 + 3 NA TTS (NR_039921) TTS (NR_039921) 1003 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 731 chr10 65897296 65897832 + 3 NA Intergenic L2a|LINE|L2 326139 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 584-16 chr5 19914850 19915259 + 3 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -28782 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 659-6 chr2 117608195 117608466 + 3 NA Intergenic Intergenic -206361 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 698.5-3 chr8 131969063 131969513 + 3 NA intron (NR_136616, intron 9 of 23) intron (NR_136616, intron 9 of 23) 52515 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 375-31 chr7 18022562 18022901 + 3 NA Intergenic Intergenic 5115 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 661-9 chr7 131435825 131436113 + 3 NA intron (NM_001321316, intron 9 of 17) intron (NM_001321316, intron 9 of 17) 108093 NM_001321316 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 523.5-6 chr14 50348109 50348371 + 3 NA intron (NM_001282236, intron 3 of 8) HAL1|LINE|L1 35916 NM_015684 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 742-3 chr18 35529535 35529826 + 3 NA Intergenic L1ME1|LINE|L1 -31720 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 398-10 chr14 73892548 73892795 + 3 NA intron (NR_040251, intron 2 of 11) MIRc|SINE|MIR 5812 NM_001242924 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 310-34 chr5 128137132 128137295 + 3 NA intron (NM_001046, intron 7 of 26) L2b|LINE|L2 53447 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 531-22 chr3 156076441 156076663 + 3 NA Intergenic L1MA3|LINE|L1 -43996 NM_001308217 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 350.5-3 chr12 14628294 14628445 + 3 NA intron (NM_004963, intron 20 of 26) MER5A|DNA|hAT-Charlie -60486 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 410.5-17 chr5 36671086 36671418 + 3 NA intron (NM_001289940, intron 4 of 7) intron (NM_001289940, intron 4 of 7) 64646 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 506-14 chr2 66066332 66066535 + 3 NA Intergenic Intergenic 291895 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 507-5 chr10 98829609 98830011 + 3 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 94758 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 559-16 chr3 170602877 170603340 + 3 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -17033 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 243-32 chr8 59222906 59223091 + 3 NA Intergenic Intergenic 103788 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 593 chr10 86867745 86868072 + 3 NA intron (NM_004329, intron 2 of 12) intron (NM_004329, intron 2 of 12) -87851 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 587-10 chr4 28776505 28776809 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -42925 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 561-9 chr13 109313520 109313786 + 3 NA Intergenic Intergenic -87043 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 658.5-2 chr12 122174956 122175202 + 3 NA promoter-TSS (NM_001014336) promoter-TSS (NM_001014336) -858 NM_001014336 386653 Hs.569071 NM_001014336 ENSG00000204671 IL31 IL-31 interleukin 31 protein-coding 384-4 chr10 43276994 43277214 + 3 NA Intergenic L1ME3D|LINE|L1 -10039 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 475-26 chr6 64211620 64211936 + 3 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 404942 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 437.5 chr1 167035439 167035728 + 3 NA Intergenic L2a|LINE|L2 46303 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 426-44 chrX 47074898 47075099 + 3 NA Intergenic L2c|LINE|L2 -3357 NM_001282848 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 704-2 chr10 72689914 72690264 + 3 NA Intergenic Intergenic -2042 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 379-29 chr22 26431020 26431277 + 3 NA intron (NM_020437, intron 1 of 3) intron (NM_020437, intron 1 of 3) 1888 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 426.5-8 chr11 82288473 82288650 + 3 NA intron (NR_120571, intron 3 of 7) L1MD1|LINE|L1 115352 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 587-3 chr10 105889465 105889843 + 3 NA Intergenic AluY|SINE|Alu -69321 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 337.5-5 chr12 116339760 116339903 + 3 NA Intergenic Charlie23a|DNA|hAT-Charlie -62645 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 718.5-7 chr17 70747531 70747974 + 3 NA Intergenic Intergenic 454427 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 589-4 chr14 61223650 61224018 + 3 NA Intergenic Intergenic 57504 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 781-5 chr5 11013478 11014185 + 3 NA intron (NM_001288715, intron 17 of 20) intron (NM_001288715, intron 17 of 20) -252597 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 305-33 chr3 175854758 175854917 + 3 NA Intergenic L1MD1|LINE|L1 -78504 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 536.5-19 chr8 116629990 116630347 + 3 NA Intergenic AluSz6|SINE|Alu -21932 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 616-4 chr12 54840609 54841178 + 3 NA Intergenic L1PB3|LINE|L1 -13623 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 756-9 chr20 22492989 22493536 + 3 NA Intergenic L1MA3|LINE|L1 -72619 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 537.5 chr1 80619153 80619393 + 3 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -22014 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 369-40 chr8 52078083 52078319 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -116161 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 454-29 chr6 150593182 150593375 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger -6607 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 574-16 chr5 78254345 78254637 + 3 NA intron (NM_003664, intron 2 of 26) L1MA1|LINE|L1 40207 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 278-21 chr3 178585251 178585404 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 26477 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 529.5-22 chr8 121294442 121294698 + 3 NA Intergenic Intergenic -344776 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 507-9 chr15 51095484 51095687 + 3 NA promoter-TSS (NM_001311175) promoter-TSS (NM_001311175) -679 NM_001311175 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 585-4 chr16 1690515 1690757 + 3 NA intron (NM_144570, intron 2 of 4) intron (NM_144570, intron 2 of 4) 12357 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 JPT2 C16orf34|HN1L|L11 Jupiter microtubule associated homolog 2 protein-coding 312.5-6 chr10 118239641 118239913 + 3 NA Intergenic Intergenic 102547 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 655.5-2 chr10 31509504 31509841 + 3 NA intron (NM_001323638, intron 8 of 12) intron (NM_001323638, intron 8 of 12) -109917 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 367-15 chr17 62686804 62687024 + 3 NA intron (NM_006039, intron 20 of 29) intron (NM_006039, intron 20 of 29) -19292 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 450-4 chr11 77675375 77675680 + 3 NA intron (NM_016578, intron 13 of 15) L2c|LINE|L2 -37721 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 521-7 chr20 40450956 40451264 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 238126 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 433-16 chr2 134422485 134422720 + 3 NA intron (NM_001371457, intron 13 of 16) intron (NM_001371457, intron 13 of 16) 168530 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 434-3 chr12 894249 894490 + 3 NA intron (NM_001184985, intron 22 of 27) intron (NM_001184985, intron 22 of 27) 38707 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 408-14 chr14 60110164 60110359 + 3 NA intron (NM_001330177, intron 2 of 10) MLT1A-int|LTR|ERVL-MaLR 18338 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 450-2 chr10 7787756 7787969 + 3 NA promoter-TSS (NM_001320886) promoter-TSS (NM_001320886) 131 NM_012311 22944 Hs.397918 NM_012311 ENSG00000151657 KIN BTCD|KIN17|Rts2 Kin17 DNA and RNA binding protein protein-coding 658.5-6 chr2 144939689 144940007 + 3 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 271881 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 427.5-10 chr15 50197773 50197977 + 3 NA intron (NM_001159629, intron 2 of 8) intron (NM_001159629, intron 2 of 8) 15679 NM_003645 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 433-27 chr6 95899971 95900123 + 3 NA Intergenic Intergenic -115927 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 465.5-14 chr2 208674155 208674375 + 3 NA intron (NR_136588, intron 3 of 5) MER50|LTR|ERV1 131623 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 427-31 chr7 95862465 95862695 + 3 NA intron (NM_004411, intron 5 of 16) L1MB7|LINE|L1 90074 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 537-5 chr11 99283705 99284001 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 262904 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 454.5-9 chr2 77809516 77809805 + 3 NA intron (NR_110288, intron 3 of 3) L1M4|LINE|L1 -106274 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 460.5-20 chr4 32116043 32116373 + 3 NA intron (NR_125936, intron 1 of 2) AluSq2|SINE|Alu -93786 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 662-4 chr2 57947909 57948204 + 3 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 40405 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 502.5 chr1 36033001 36033319 + 3 NA intron (NM_177422, intron 10 of 16) AluSq2|SINE|Alu -50934 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 569-4 chr11 35493861 35494191 + 3 NA intron (NM_015430, intron 2 of 11) intron (NM_015430, intron 2 of 11) 31590 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 312-13 chr2 65179806 65179950 + 3 NA Intergenic LTR102_Mam|LTR|ERVL -47817 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 240-10 chr11 80804220 80804363 + 3 NA Intergenic Intergenic -41488 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 459.5-3 chr1 78460414 78460680 + 3 NA Intergenic L1PA15|LINE|L1 -30427 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 438.5-2 chr12 33434161 33434427 + 3 NA intron (NM_198992, intron 1 of 6) intron (NM_198992, intron 1 of 6) 5525 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 537.5-13 chr20 28495267 28495506 + 3 NA Intergenic ALR/Alpha|Satellite|centr 107279 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 496.5-3 chr10 43029136 43029332 + 3 NA Intergenic Intergenic 31671 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 548.5-16 chr5 129768682 129769073 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 20783 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 678-2 chr12 23185240 23185635 + 3 NA intron (NR_120471, intron 1 of 4) intron (NR_120471, intron 1 of 4) 9801 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 382-36 chr5 50948717 50948924 + 3 NA Intergenic Intergenic 21367 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 522-27 chr4 33065562 33065961 + 3 NA Intergenic Intergenic 714723 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 320-28 chr6 127442777 127442930 + 3 NA 3' UTR (NM_001012279, exon 12 of 12) 3' UTR (NM_001012279, exon 12 of 12) 16536 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 330-2 chr1 167112940 167113078 + 3 NA intron (NM_001080426, intron 2 of 5) intron (NM_001080426, intron 2 of 5) 18934 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 411.5-27 chr9 102789686 102789942 + 3 NA Intergenic L1MD3|LINE|L1 -205519 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 422-31 chr8 106179836 106180043 + 3 NA Intergenic L1MEg|LINE|L1 -90239 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 608-18 chr8 135200425 135200767 + 3 NA Intergenic Intergenic -33535 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 622-11 chr22 40533873 40534192 + 3 NA promoter-TSS (NM_001318139) promoter-TSS (NM_001318139) -205 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 466-17 chr2 212927310 212927628 + 3 NA Intergenic MIRc|SINE|MIR -1133 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 254.5-50 chrX 74335479 74335609 + 3 NA Intergenic MER31-int|LTR|ERV1 31364 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 1087.5 chr17 27471460 27471966 + 3 NA promoter-TSS (NM_014238) promoter-TSS (NM_014238) -251 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 737.5-4 chr4 32231319 32231770 + 3 NA Intergenic Intergenic -119494 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 472.5-9 chr2 74807888 74808101 + 3 NA Intergenic MER45B|DNA|hAT-Tip100 -24661 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 1048-2 chr14 55993465 55993993 + 3 NA Intergenic L1ME1|LINE|L1 -124682 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 691.5-3 chr15 100026884 100027258 + 3 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) 220048 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 735-2 chr14 35888931 35889298 + 3 NA Intergenic HAL1M8|LINE|L1 62776 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 408-17 chr15 98614327 98614472 + 3 NA Intergenic Intergenic -34140 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 401.5-25 chr5 84781879 84782141 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -397130 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 493.5-12 chr3 105212457 105212777 + 3 NA Intergenic L1ME1|LINE|L1 -154096 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 546.5-3 chr17 73648343 73648614 + 3 NA Intergenic Intergenic -4033 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 669.5-9 chr8 92616543 92616803 + 3 NA intron (NR_125827, intron 3 of 4) MLT1B|LTR|ERVL-MaLR 38821 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 484.5-19 chr5 41682474 41682635 + 3 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 161103 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 429-22 chr22 44534638 44534822 + 3 NA Intergenic Intergenic -34610 NR_028409 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 826-4 chr3 110864858 110865185 + 3 NA Intergenic Intergenic 204938 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 530-26 chr7 40318896 40319334 + 3 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 184139 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 1089 chr11 21651805 21652305 + 3 NA Intergenic Intergenic -541030 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 143.5-27 chr9 83643820 83643867 + 3 NA non-coding (NR_046422, exon 6 of 6) non-coding (NR_046422, exon 6 of 6) 20700 NM_001351535 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 948.5 chr20 154815 155194 + 3 NA Intergenic Intergenic -2450 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 650.5-2 chr10 76987762 76988153 + 3 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 99913 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 552-9 chr18 7029774 7030135 + 3 NA intron (NM_005559, intron 16 of 62) intron (NM_005559, intron 16 of 62) 75277 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 437-16 chr15 101330143 101330318 + 3 NA intron (NM_138319, intron 14 of 20) intron (NM_138319, intron 14 of 20) -4207 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 482.5-10 chr2 33350873 33351277 + 3 NA intron (NM_206943, intron 26 of 33) intron (NM_206943, intron 26 of 33) -67441 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 673-4 chr4 34487275 34487605 + 3 NA Intergenic Intergenic -217693 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 508.5-17 chr4 72244769 72245095 + 3 NA Intergenic Intergenic 205800 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 628.5-8 chr5 63802342 63802702 + 3 NA Intergenic Intergenic 159770 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 256 chr10 116135133 116135250 + 3 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 59598 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 415-5 chr10 51019097 51019277 + 3 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 28299 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 385-14 chr17 61854860 61855164 + 3 NA intron (NM_032043, intron 4 of 19) L1ME1|LINE|L1 8547 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 316.5-14 chr2 60307691 60307824 + 3 NA Intergenic Intergenic 75279 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 432-15 chr2 55190556 55190907 + 3 NA intron (NR_148539, intron 1 of 3) L1MB7|LINE|L1 -41172 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 618-19 chr9 136454867 136455325 + 3 NA intron (NM_014866, intron 20 of 31) CpG -15251 NM_019892 56623 Hs.120998 NM_019892 ENSG00000148384 INPP5E CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin inositol polyphosphate-5-phosphatase E protein-coding 511.5-18 chr5 174510131 174510503 + 3 NA intron (NR_125806, intron 2 of 5) MamRep1879|DNA|hAT-Tip100? 173963 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 657-7 chr2 119353677 119354152 + 3 NA intron (NM_001322329, intron 1 of 6) L1MA6|LINE|L1 12828 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 480-21 chr20 60922436 60922648 + 3 NA Intergenic Intergenic -156522 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 774-3 chr21 28366171 28366837 + 3 NA Intergenic L1M3d|LINE|L1 -137837 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 584-4 chr12 40216543 40216844 + 3 NA Intergenic Intergenic -8304 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 529.5-16 chr21 32088243 32088557 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -2105 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 398-24 chr3 5310418 5310580 + 3 NA Intergenic L2b|LINE|L2 -60244 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 633.5-5 chr2 63362024 63362256 + 3 NA intron (NM_001354045, intron 12 of 12) L1MA4|LINE|L1 75867 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 763.5-4 chr9 76958685 76959048 + 3 NA Intergenic AluSq|SINE|Alu -52752 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 955.5-2 chr8 69239286 69239895 + 3 NA Intergenic Intergenic -135400 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 574-7 chr14 48858094 48858467 + 3 NA Intergenic Intergenic 728100 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 733-3 chr2 181984321 181984643 + 3 NA intron (NR_048567, intron 2 of 4) intron (NR_048567, intron 2 of 4) -1342 NM_001080545 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 417-43 chr8 138359314 138359495 + 3 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 137857 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 406.5-18 chr20 52626315 52626479 + 3 NA intron (NR_110038, intron 2 of 2) MLT1G3|LTR|ERVL-MaLR 5559 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 533-12 chr14 69765809 69766159 + 3 NA TTS (NR_029378) TTS (NR_029378) -1158 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 475-21 chr22 27914484 27914708 + 3 NA intron (NM_012399, intron 1 of 11) intron (NM_012399, intron 1 of 11) 4618 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 817.5-4 chr8 108806768 108807552 + 3 NA Intergenic AluSx1|SINE|Alu -19566 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 516-29 chr8 25390071 25390293 + 3 NA intron (NM_024940, intron 41 of 51) intron (NM_024940, intron 41 of 51) -28670 NR_159962 105379331 NR_159962 LOC105379331 - uncharacterized LOC105379331 ncRNA 618-17 chr7 75022623 75023044 + 3 NA intron (NM_001145064, intron 7 of 8) AluSx|SINE|Alu 50969 NM_030798 81554 Hs.529623 NM_030798 ENSG00000274523 RCC1L WBSCR16 RCC1 like protein-coding 442 chr1 39211851 39212066 + 3 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 127791 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 825 chr10 83662214 83662606 + 3 NA Intergenic MIR|SINE|MIR 14679 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 668-2 chr10 51878316 51878630 + 3 NA intron (NM_001098512, intron 4 of 17) OldhAT1|DNA|hAT-Ac -178878 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 565.5-5 chr18 33627666 33627989 + 3 NA intron (NM_030632, intron 2 of 11) intron (NM_030632, intron 2 of 11) 49608 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 472 chr1 54617049 54617293 + 3 NA intron (NM_176782, intron 2 of 7) intron (NM_176782, intron 2 of 7) 6354 NM_176782 338094 Hs.234786 NM_176782 ENSG00000162391 FAM151A C1orf179 family with sequence similarity 151 member A protein-coding 505.5-16 chr6 165068774 165068967 + 3 NA Intergenic L1MC2|LINE|L1 240735 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 522-32 chr8 109487016 109487330 + 3 NA intron (NM_177531, intron 59 of 77) L1MC5|LINE|L1 -52527 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 425 chr1 102324633 102324885 + 3 NA Intergenic Intergenic -327525 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 583.5-16 chr6 133205005 133205228 + 3 NA Intergenic Intergenic -36241 NM_172103 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 603-8 chr5 141689710 141690006 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -7628 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 590-15 chr8 9915202 9915398 + 3 NA Intergenic Intergenic -11828 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 497-4 chr12 25770722 25770998 + 3 NA Intergenic AluJr|SINE|Alu 103219 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 280.5-33 chr6 164314088 164314327 + 3 NA Intergenic MER45R|DNA|hAT-Tip100 507856 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 677-9 chr3 127278150 127278503 + 3 NA Intergenic Intergenic 9720 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 327-40 chr6 48612619 48612766 + 3 NA Intergenic Intergenic -544003 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 649 chr1 11823458 11823865 + 3 NA intron (NM_001286, intron 6 of 22) intron (NM_001286, intron 6 of 22) -16658 NR_037806 100379251 Hs.710015 NR_037806 NPPA-AS1 NPPA-AS|NPPAAS NPPA antisense RNA 1 ncRNA 290-29 chr6 133497014 133497156 + 3 NA intron (NM_172103, intron 12 of 18) MIRb|SINE|MIR 255586 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 774 chr10 82240567 82241123 + 3 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -7925 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 852-6 chr2 122954758 122955237 + 3 NA Intergenic Intergenic 118484 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 848-3 chr6 38912565 38912993 + 3 NA intron (NM_001371, intron 65 of 91) MER63B|DNA|hAT-Blackjack 40328 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 499.5-22 chr7 51365942 51366263 + 3 NA Intergenic AluSq2|SINE|Alu 27154 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 499.5-4 chr12 40594815 40595040 + 3 NA Intergenic L1MA6|LINE|L1 -97512 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 391.5-21 chr2 173392232 173392442 + 3 NA Intergenic L1ME3|LINE|L1 37465 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 957.5-2 chr22 28268325 28268756 + 3 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -191329 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 989-3 chr16 75932865 75933663 + 3 NA Intergenic Intergenic -206774 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 425-41 chrX 144561278 144561741 + 3 NA Intergenic Intergenic 677438 NR_121210 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 586-11 chr3 181593471 181593849 + 3 NA intron (NR_075091, intron 4 of 7) L1ME4a|LINE|L1 -16674 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 617-12 chr7 119911341 119911562 + 3 NA Intergenic L1PA13|LINE|L1 -4076 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 758-5 chr20 42357292 42357572 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -328051 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 488.5-4 chr14 68404345 68404659 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 224285 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 339-2 chr10 48218949 48219070 + 3 NA intron (NM_001018071, intron 12 of 28) intron (NM_001018071, intron 12 of 28) 32748 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 620-4 chr11 81485871 81486178 + 3 NA Intergenic Intergenic 404812 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 664.5-6 chr2 160471140 160471476 + 3 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 22499 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 271.5-27 chr4 33028654 33028771 + 3 NA Intergenic Intergenic 677674 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 474-27 chr5 136077662 136077866 + 3 NA Intergenic L2a|LINE|L2 2834 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 417-10 chr11 85634719 85634909 + 3 NA 3' UTR (NM_001350394, exon 3 of 3) 3' UTR (NM_001350394, exon 3 of 3) 6241 NM_001193538 55863 Hs.525063 NM_018480 ENSG00000171204 TMEM126B HT007|MC1DN29 transmembrane protein 126B protein-coding 429.5-23 chr9 77841351 77841506 + 3 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 190383 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 340.5-25 chr5 11531047 11531263 + 3 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 57762 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 562.5-4 chr10 65138109 65138300 + 3 NA Intergenic L1M4|LINE|L1 -213686 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 1038-2 chr6 138119481 138119950 + 3 NA Intergenic L1PA13|LINE|L1 -12296 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 629.5-7 chr4 123680853 123681389 + 3 NA intron (NR_027105, intron 3 of 5) L2a|LINE|L2 31130 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 583.5-3 chr10 72789049 72789316 + 3 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 68153 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 243-22 chr21 29914812 29914942 + 3 NA intron (NM_000830, intron 1 of 16) MLT1I|LTR|ERVL-MaLR 25119 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 600.5-3 chr12 42100522 42100862 + 3 NA intron (NM_173601, intron 5 of 7) intron (NM_173601, intron 5 of 7) 44182 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 413-24 chr20 59465010 59465252 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -112378 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 332-21 chr20 10102604 10102781 + 3 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 67705 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 337.5-7 chr14 55327484 55327600 + 3 NA intron (NM_152231, intron 1 of 1) L2a|LINE|L2 55388 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 489-7 chr11 92017590 92017758 + 3 NA Intergenic L1PBa|LINE|L1 -207360 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 554.5-15 chr9 130546139 130546443 + 3 NA Intergenic AluSx|SINE|Alu 33203 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 346-24 chr22 32659783 32660136 + 3 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -140857 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 1300 chr14 28833130 28833801 + 3 NA Intergenic Intergenic -47678 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 396-25 chr6 3375522 3375764 + 3 NA intron (NM_021945, intron 4 of 10) intron (NM_021945, intron 4 of 10) 69370 NR_104448 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 348-5 chr10 65213818 65213998 + 3 NA Intergenic Intergenic -289390 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 484-19 chr18 68403856 68404103 + 3 NA Intergenic L1M3|LINE|L1 311129 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 351-3 chr1 190354951 190355096 + 3 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 120987 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 484-11 chr11 58058879 58059138 + 3 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) 28055 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 697-6 chr3 20062936 20063433 + 3 NA intron (NM_003884, intron 1 of 17) AluJr|SINE|Alu 22738 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 599-2 chr1 188696298 188696649 + 3 NA Intergenic L1MA4A|LINE|L1 1252845 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 435-30 chr5 87650875 87651062 + 3 NA Intergenic L1MC3|LINE|L1 -11074 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 424-18 chr4 108448034 108448310 + 3 NA Intergenic FLAM_C|SINE|Alu -109061 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 308-21 chr2 215664007 215664237 + 3 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -53921 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 490-9 chr15 73151178 73151489 + 3 NA intron (NM_002499, intron 5 of 28) intron (NM_002499, intron 5 of 28) 98849 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 319-6 chr12 127381340 127381512 + 3 NA Intergenic Intergenic -41354 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 550-2 chr1 111883528 111883848 + 3 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR -25969 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 429-12 chr17 69153650 69153904 + 3 NA intron (NM_080282, intron 33 of 39) intron (NM_080282, intron 33 of 39) -11882 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 489-11 chr12 115610680 115610859 + 3 NA Intergenic MSTB2|LTR|ERVL-MaLR 537885 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 370-15 chr2 13942486 13942645 + 3 NA Intergenic Intergenic 458393 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 378-10 chr14 98959787 98959989 + 3 NA Intergenic Intergenic 248275 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 684-10 chr6 53126573 53127083 + 3 NA TTS (NM_003643) TTS (NM_003643) 22013 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 436.5-12 chr3 194055539 194055778 + 3 NA intron (NR_136181, intron 2 of 3) MIRb|SINE|MIR 13871 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 535-12 chr18 9613301 9613522 + 3 NA intron (NM_001042388, intron 2 of 19) intron (NM_001042388, intron 2 of 19) 1148 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 274-20 chr3 7917295 7917412 + 3 NA Intergenic Intergenic 98954 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 618-14 chr6 45193686 45194245 + 3 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 3805 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 398-27 chr4 103249548 103249701 + 3 NA Intergenic Intergenic -51281 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 677.5-3 chr5 159760429 159760909 + 3 NA Intergenic Intergenic 110715 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 494-17 chr6 38052362 38052713 + 3 NA intron (NM_021943, intron 2 of 5) L2a|LINE|L2 232810 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 284.5-7 chr10 54724472 54724634 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 76678 NM_001354430 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 888-6 chr6 97547164 97547691 + 3 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 241841 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 756-11 chr9 103465517 103465834 + 3 NA Intergenic L1MCa|LINE|L1 -140642 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 646-3 chr2 117569190 117569622 + 3 NA Intergenic L1PA13|LINE|L1 -245285 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 402-10 chr11 67167634 67167844 + 3 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 48476 NM_012308 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 252-4 chr10 13273451 13273592 + 3 NA Intergenic Intergenic 26225 NM_001323080 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 490.5 chr1 151977885 151978082 + 3 NA Intergenic Intergenic 15876 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 536-22 chr9 132200246 132200507 + 3 NA intron (NM_032536, intron 3 of 7) intron (NM_032536, intron 3 of 7) 38318 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 311.5-10 chr10 123039648 123039841 + 3 NA intron (NM_001609, intron 3 of 10) intron (NM_001609, intron 3 of 10) 30738 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 364.5-12 chr19 47625598 47625776 + 3 NA intron (NM_015711, intron 1 of 14) intron (NM_015711, intron 1 of 14) 17491 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 325-13 chr20 51451105 51451295 + 3 NA intron (NM_012340, intron 6 of 10) intron (NM_012340, intron 6 of 10) 1777 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 756-10 chr4 46316267 46316633 + 3 NA intron (NM_001286827, intron 3 of 9) MER58A|DNA|hAT-Charlie 72929 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 376.5-9 chr17 58048247 58048485 + 3 NA Intergenic L1M5|LINE|L1 34838 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 568-2 chr10 44895909 44896259 + 3 NA intron (NR_033842, intron 2 of 7) MLT1H|LTR|ERVL-MaLR -15232 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 617-13 chr8 69721106 69721346 + 3 NA intron (NM_001146009, intron 3 of 7) MLT1J|LTR|ERVL-MaLR 111943 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 753-7 chr2 155612660 155612942 + 3 NA Intergenic Intergenic 642130 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 317-32 chrX 28099957 28100076 + 3 NA Intergenic Intergenic -118567 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 487.5-27 chr7 14507778 14508047 + 3 NA intron (NM_001350717, intron 19 of 24) MER130|DNA|DNA 333538 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 401.5-7 chr10 73068738 73069052 + 3 NA exon (NM_001142595, exon 6 of 16) exon (NM_001142595, exon 6 of 16) 28079 NM_001142596 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 751.5-5 chr8 124045085 124045527 + 3 NA TTS (NR_103547) TTS (NR_103547) -4524 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 465-3 chr1 28244049 28244247 + 3 NA Intergenic Intergenic 8024 NM_178190 93974 Hs.744914 NM_016311 ENSG00000130770 ATP5IF1 ATPI|ATPIF1|ATPIP|IP ATP synthase inhibitory factor subunit 1 protein-coding 218-16 chr18 1661341 1661440 + 3 NA Intergenic HAL1|LINE|L1 -301761 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 681-3 chr4 5901482 5901928 + 3 NA Intergenic Intergenic -8619 NM_001014809 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 481.5-10 chr3 29090801 29091125 + 3 NA Intergenic L2a|LINE|L2 189976 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 619.5-9 chr3 194170622 194170881 + 3 NA Intergenic Intergenic 34603 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 577-12 chr8 27028399 27028764 + 3 NA Intergenic AluJb|SINE|Alu 20382 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 550.5-12 chr4 84200273 84200623 + 3 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 98721 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 429-29 chr5 42620135 42620364 + 3 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 54385 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 1012-2 chr5 127296133 127296792 + 3 NA intron (NM_001308121, intron 1 of 13) intron (NM_001308121, intron 1 of 13) 5666 NM_001256545 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 646.5-13 chr9 32682971 32683273 + 3 NA Intergenic L1MA1|LINE|L1 -47453 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 425-5 chr1 182275578 182275793 + 3 NA intron (NR_104175, intron 2 of 2) MLT1B|LTR|ERVL-MaLR 38376 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 964.5-5 chr8 114110510 114111092 + 3 NA Intergenic L1PA13|LINE|L1 -673862 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 363-12 chr13 48655374 48655547 + 3 NA intron (NM_001308471, intron 1 of 1) intron (NM_001308471, intron 1 of 1) 1531 NM_020377 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 541-22 chrX 41230715 41230953 + 3 NA intron (NM_001039591, intron 44 of 44) intron (NM_001039591, intron 44 of 44) -44905 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 300-31 chr8 104967721 104967862 + 3 NA Intergenic Intergenic -350647 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 760.5-4 chr18 76326166 76326622 + 3 NA Intergenic Intergenic 116884 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 433-9 chr15 48248404 48248618 + 3 NA intron (NM_001184832, intron 13 of 26) intron (NM_001184832, intron 13 of 26) 42209 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 1084 chr13 42415792 42416313 + 3 NA Intergenic Intergenic -8840 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 628-7 chr14 61860654 61861054 + 3 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 48151 NM_001367657 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 577.5-14 chr2 201436938 201437230 + 3 NA intron (NM_015049, intron 1 of 15) intron (NM_015049, intron 1 of 15) 14374 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 822-6 chr5 90824863 90825288 + 3 NA intron (NR_003149, intron 76 of 89) AluSz|SINE|Alu 266278 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 356-38 chr8 138974695 138974946 + 3 NA Intergenic Intergenic -60779 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 615-7 chr15 49378472 49378826 + 3 NA intron (NM_152647, intron 11 of 15) L1MA1|LINE|L1 -44593 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 315-2 chr1 74091766 74091880 + 3 NA intron (NM_001105659, intron 5 of 7) intron (NM_001105659, intron 5 of 7) 106353 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 541.5-2 chr1 201598649 201598922 + 3 NA Intergenic Intergenic -49537 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 625.5-7 chr2 214500165 214500510 + 3 NA intron (NM_001080500, intron 3 of 3) MLT1J|LTR|ERVL-MaLR -9845 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 638.5-4 chr15 24630875 24631370 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -44272 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 496.5-5 chr13 31654644 31654839 + 3 NA Intergenic Intergenic -84785 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 991.5 chr12 117871161 117871750 + 3 NA intron (NM_173598, intron 1 of 19) AluSz|SINE|Alu 97535 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 635.5-7 chr17 68540252 68540484 + 3 NA intron (NM_017565, intron 8 of 10) intron (NM_017565, intron 8 of 10) 18059 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 620-10 chr20 10723543 10723874 + 3 NA Intergenic MIR|SINE|MIR -29382 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 484.5-9 chr12 131490034 131490198 + 3 NA Intergenic L1MA10|LINE|L1 142646 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 364.5-3 chr10 114805522 114805731 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -16154 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 441-33 chr5 153054954 153055315 + 3 NA Intergenic Intergenic -82785 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 351-9 chr14 51975150 51975364 + 3 NA Intergenic Intergenic -14289 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 302-30 chr7 72208181 72208334 + 3 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 129134 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 523.5-7 chr18 53399038 53399382 + 3 NA intron (NM_005215, intron 18 of 28) intron (NM_005215, intron 18 of 28) 162109 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 383-13 chr15 25432972 25433178 + 3 NA intron (NM_001354507, intron 1 of 14) intron (NM_001354507, intron 1 of 14) 5154 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 559-19 chr6 93712494 93712882 + 3 NA intron (NR_015362, intron 1 of 9) L1MA9|LINE|L1 -5615 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 484.5-5 chr10 20645432 20645625 + 3 NA Intergenic Intergenic 93558 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 772.5-4 chr4 86277858 86278249 + 3 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 76591 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 677-10 chr3 166765837 166766237 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -132646 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 379-37 chr6 134196421 134196621 + 3 NA intron (NM_001143676, intron 3 of 13) MIR|SINE|MIR -18660 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 855-4 chr6 97187927 97188402 + 3 NA intron (NM_001350600, intron 13 of 23) intron (NM_001350600, intron 13 of 23) 95052 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 393-34 chr7 91702193 91702417 + 3 NA Intergenic AluSg|SINE|Alu 178397 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 591-16 chrX 110313227 110313559 + 3 NA intron (NM_001171689, intron 3 of 7) intron (NM_001171689, intron 3 of 7) 4692 NM_001025580 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1|MFHIEN Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 456-14 chr18 31716036 31716217 + 3 NA Intergenic Intergenic -31381 NM_004775 9331 Hs.591063 NM_004775 ENSG00000118276 B4GALT6 B4Gal-T6|beta4Gal-T6 beta-1,4-galactosyltransferase 6 protein-coding 707-4 chr12 60371897 60372336 + 3 NA Intergenic L1MCa|LINE|L1 682746 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 590.5-7 chr11 58760026 58760415 + 3 NA Intergenic L1MA9|LINE|L1 -28246 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 514.5-18 chr5 86664856 86665187 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy 44515 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 733 chr10 14835048 14835500 + 3 NA intron (NM_001029954, intron 1 of 3) L2a|LINE|L2 2763 NM_001029954 441549 Hs.559067 NM_001029954 ENSG00000185267 CDNF ARMETL1 cerebral dopamine neurotrophic factor protein-coding 592.5-4 chr14 64243342 64243674 + 3 NA intron (NM_001271877, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 27554 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 424-22 chr8 113165461 113165764 + 3 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 211540 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 601.5-4 chr13 97876591 97876841 + 3 NA Intergenic L1MC3|LINE|L1 -76959 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 362-30 chr8 6534421 6534643 + 3 NA intron (NM_001147, intron 1 of 8) AluJo|SINE|Alu 28713 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 300-22 chr5 125641855 125642119 + 3 NA Intergenic L1MA7|LINE|L1 148726 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 539-15 chr6 35944013 35944338 + 3 NA exon (NM_138718, exon 18 of 18) exon (NM_138718, exon 18 of 18) -22995 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 647-14 chr4 29105434 29105688 + 3 NA Intergenic L3|LINE|CR1 -108731 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 483-15 chr2 46024563 46024852 + 3 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -272700 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 411-14 chr14 87294369 87294585 + 3 NA Intergenic Intergenic 360817 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 468-9 chr14 89087008 89087249 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 262477 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 717.5-3 chr2 69312000 69312509 + 3 NA Intergenic AluSx1|SINE|Alu 74973 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 659.5-9 chr8 117431964 117432357 + 3 NA Intergenic Intergenic -88553 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 438-4 chr1 208193039 208193269 + 3 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 51230 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 429.5-7 chr18 30741204 30741364 + 3 NA Intergenic Intergenic 301458 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 556-12 chr4 41380278 41380476 + 3 NA intron (NM_001289122, intron 1 of 25) AluJr|SINE|Alu 19570 NM_014988 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 454.5-25 chr6 152511100 152511305 + 3 NA intron (NM_182961, intron 6 of 145) intron (NM_182961, intron 6 of 145) 125649 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 1043-2 chr3 23788327 23788932 + 3 NA Intergenic Intergenic -17326 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 794-2 chr2 116217496 116217903 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 873884 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 760.5-3 chr15 24646483 24646863 + 3 NA Intergenic L1MC3|LINE|L1 -28721 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 531-33 chr8 135568224 135568501 + 3 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 110906 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 660-10 chr2 188638284 188638714 + 3 NA Intergenic L1MC4|LINE|L1 151624 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 511.5-6 chr11 29635708 29635963 + 3 NA Intergenic Intergenic 17033 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 498-4 chr1 119281196 119281496 + 3 NA Intergenic L2b|LINE|L2 -46906 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 383-8 chr12 20220154 20220388 + 3 NA Intergenic L1MA4|LINE|L1 -92370 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 607-12 chr12 61577801 61578160 + 3 NA Intergenic Intergenic 614859 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 370-26 chr5 43819055 43819189 + 3 NA Intergenic Intergenic -215892 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 610-11 chr4 32992941 32993187 + 3 NA Intergenic Intergenic 642026 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 390.5-22 chr4 44026526 44026726 + 3 NA Intergenic L1MA4A|LINE|L1 9564 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 632-6 chr16 20617972 20618214 + 3 NA Intergenic Intergenic -41726 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 856-2 chr13 40374201 40374643 + 3 NA intron (NR_024506, intron 5 of 5) intron (NR_024506, intron 5 of 5) 106584 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 430-19 chr3 98934298 98934459 + 3 NA Intergenic L1PA10|LINE|L1 -32683 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 705.5-2 chr1 51879352 51879833 + 3 NA promoter-TSS (NM_002525) promoter-TSS (NM_002525) -655 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 804.5 chr1 38588734 38589172 + 3 NA Intergenic Intergenic 113757 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 603-9 chr6 43492332 43492754 + 3 NA intron (NM_001350567, intron 2 of 10) intron (NM_001350567, intron 2 of 10) 2785 NM_001350568 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 324-15 chr16 63434863 63434989 + 3 NA Intergenic Intergenic -1398488 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 250.5-40 chr8 78282989 78283113 + 3 NA Intergenic L1MEc|LINE|L1 -233289 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 537.5-17 chr8 113944516 113944998 + 3 NA Intergenic Intergenic -507818 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 450.5-8 chr2 115580176 115580398 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 236472 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 526.5 chr1 80988549 80988746 + 3 NA Intergenic Intergenic -317545 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 351.5-3 chr11 69257620 69257768 + 3 NA Intergenic Intergenic -36461 NM_001300923 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 669-5 chr11 84668525 84668962 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 52199 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 263-24 chr8 78079479 78079587 + 3 NA Intergenic L2a|LINE|L2 -436807 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 305.5-3 chr1 157167987 157168096 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -29450 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 322 chr1 73705164 73705354 + 3 NA intron (NR_146300, intron 2 of 3) intron (NR_146300, intron 2 of 3) 30580 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 344-28 chr5 144735268 144735447 + 3 NA Intergenic L1PA16|LINE|L1 529966 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 374-19 chr2 178647535 178647683 + 3 NA intron (NM_001267550, intron 213 of 362) intron (NM_001267550, intron 213 of 362) 124418 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 390-7 chr16 46928198 46928394 + 3 NA intron (NM_001142466, intron 11 of 11) AluJr|SINE|Alu -41822 NR_145840 109623466 NR_145840 SNORD148 - small nucleolar RNA, C/D box 148 snoRNA 896 chr1 246305647 246306194 + 3 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 111492 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 612-4 chr11 5302702 5303022 + 3 NA promoter-TSS (NM_033179) promoter-TSS (NM_033179) -916 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 611 chr10 23388911 23389347 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -44332 NM_001365862 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 461-20 chr4 34165943 34166219 + 3 NA intron (NR_147184, intron 2 of 3) L1ME2|LINE|L1 103666 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 630-5 chr10 118865626 118865866 + 3 NA Intergenic L1ME4a|LINE|L1 -110776 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 673.5-6 chr4 150307740 150308013 + 3 NA intron (NM_001367550, intron 52 of 56) intron (NM_001367550, intron 52 of 56) 229431 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 634-2 chr11 25485698 25486075 + 3 NA Intergenic Intergenic -703237 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 486-7 chr10 85924362 85924574 + 3 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 340320 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 439-23 chr9 37838083 37838273 + 3 NA intron (NM_001286810, intron 2 of 6) intron (NM_001286810, intron 2 of 6) 37381 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 545-10 chr14 45068874 45069206 + 3 NA intron (NR_131765, intron 18 of 19) L1MD|LINE|L1 -15076 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 549-17 chr7 27261166 27261443 + 3 NA Intergenic Intergenic -14075 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 645-12 chr5 137906522 137906848 + 3 NA intron (NM_001258448, intron 6 of 14) intron (NM_001258448, intron 6 of 14) 17228 NM_001300921 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 478-20 chr2 225464242 225464401 + 3 NA intron (NM_001371273, intron 3 of 7) LTR16A|LTR|ERVL 63435 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 634-6 chr14 67313174 67313473 + 3 NA intron (NM_001256550, intron 9 of 14) Tigger3c|DNA|TcMar-Tigger 46481 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 460-19 chr5 29876463 29876692 + 3 NA Intergenic Intergenic -3983 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 561.5-9 chr2 169612555 169612896 + 3 NA intron (NM_004792, intron 7 of 13) L1MB4|LINE|L1 28374 NM_004792 9360 Hs.470544 NM_004792 ENSG00000138398 PPIG CARS-Cyp|CYP|SCAF10|SRCyp peptidylprolyl isomerase G protein-coding 546-6 chr17 10132086 10132309 + 3 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 66409 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 381-7 chr13 95797635 95797807 + 3 NA Intergenic Intergenic 120582 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 333-19 chr2 202954330 202954560 + 3 NA intron (NR_136330, intron 6 of 14) AluSg7|SINE|Alu 42170 NM_001322427 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 844.5 chr17 69405280 69405724 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -9195 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 394-13 chr18 13277557 13277769 + 3 NA promoter-TSS (NM_181481) promoter-TSS (NM_181481) -442 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 571-24 chr9 29129413 29129675 + 3 NA intron (NM_001354574, intron 1 of 5) LOR1-int|LTR|ERV1 82755 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 544-5 chr16 70291145 70291357 + 3 NA intron (NM_001257174, intron 1 of 9) MIR|SINE|MIR 1484 NM_001257174 11269 Hs.221761 NM_007242 ENSG00000157349 DDX19B DBP5|DDX19|RNAh DEAD-box helicase 19B protein-coding 344-19 chr18 79977418 79977575 + 3 NA intron (NR_131175, intron 3 of 4) intron (NR_131175, intron 3 of 4) 11067 NR_131175 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 489-30 chr7 2048148 2048397 + 3 NA intron (NM_001013837, intron 12 of 18) MIRb|SINE|MIR 40780 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 384-19 chr20 42630761 42630978 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -54614 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 407.5-9 chr16 56485733 56485938 + 3 NA intron (NM_031885, intron 15 of 16) intron (NM_031885, intron 15 of 16) 33751 NM_001324358 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 413.5-11 chr2 44439830 44439978 + 3 NA intron (NM_024766, intron 3 of 10) LTR89|LTR|ERVL? 77957 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 305-19 chr18 11099651 11099771 + 3 NA intron (NM_022068, intron 1 of 51) AluSx1|SINE|Alu 49051 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 642-17 chr8 59524746 59525080 + 3 NA Intergenic Intergenic 405703 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 286-29 chr5 119115291 119115514 + 3 NA intron (NM_001290321, intron 6 of 43) intron (NM_001290321, intron 6 of 43) -39235 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 724-4 chr15 25728906 25729284 + 3 NA intron (NM_024490, intron 3 of 20) MLT1B|LTR|ERVL-MaLR 119730 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 908.5-4 chr4 64855928 64856273 + 3 NA Intergenic Intergenic 148400 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 365-14 chr2 65821130 65821377 + 3 NA Intergenic Intergenic -388654 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 596-16 chr6 80721636 80721999 + 3 NA Intergenic MamRep1151|LTR?|LTR? 615146 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 463-3 chr10 24399082 24399361 + 3 NA intron (NM_019590, intron 3 of 20) intron (NM_019590, intron 3 of 20) -50193 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 545-12 chr16 48818658 48818867 + 3 NA Intergenic Intergenic -208582 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 688.5-9 chrX 31741404 31741793 + 3 NA intron (NM_000109, intron 51 of 78) Tigger1|DNA|TcMar-Tigger -233300 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 474-11 chr15 99090053 99090261 + 3 NA Intergenic Intergenic -14923 NM_015286 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 613-9 chr6 56833377 56833672 + 3 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 10141 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 542-11 chr15 63003360 63003605 + 3 NA Intergenic Intergenic -39265 NM_001365779 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 350-29 chr5 39798403 39798533 + 3 NA Intergenic Intergenic -253823 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 404-4 chr1 197318133 197318303 + 3 NA intron (NM_001257965, intron 3 of 14) L1MA6|LINE|L1 49966 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 547-14 chr4 38261188 38261409 + 3 NA Intergenic MIR|SINE|MIR -105616 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 356-22 chr2 77065581 77065802 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 79726 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 477.5-9 chr12 51990365 51990573 + 3 NA intron (NM_004302, intron 7 of 8) AluJb|SINE|Alu -16477 NM_181711 160622 Hs.407202 NM_181711 ENSG00000161835 GRASP TAMALIN general receptor for phosphoinositides 1 associated scaffold protein protein-coding 455.5-11 chr2 119160612 119160763 + 3 NA Intergenic MIRb|SINE|MIR -1936 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 524-10 chr2 183653026 183653329 + 3 NA Intergenic Intergenic 528734 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 447-21 chr4 82514561 82514751 + 3 NA intron (NM_001353454, intron 1 of 7) MLT1J|LTR|ERVL-MaLR 47332 NM_001080506 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 470.5-9 chr3 38192911 38193116 + 3 NA intron (NM_005109, intron 3 of 17) MIR|SINE|MIR 27476 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 514.5-9 chr2 110784665 110785008 + 3 NA intron (NM_001371254, intron 3 of 18) intron (NM_001371254, intron 3 of 18) 52263 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 570.5-3 chr10 35083980 35084295 + 3 NA intron (NM_001198777, intron 1 of 20) AluSx1|SINE|Alu -4457 NR_037405 100500890 NR_037405 ENSG00000266228 MIR3611 - microRNA 3611 ncRNA 402.5-4 chr1 212077565 212077714 + 3 NA promoter-TSS (NR_036068) promoter-TSS (NR_036068) 26 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 670-10 chr3 118597451 118597877 + 3 NA intron (NR_135547, intron 2 of 3) L2b|LINE|L2 -44104 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 474-4 chr12 5898280 5898519 + 3 NA intron (NM_001278596, intron 3 of 25) L1ME3A|LINE|L1 46860 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 829-5 chr6 162711346 162711758 + 3 NA intron (NM_004562, intron 1 of 11) HERVL40-int|LTR|ERVL -15580 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 565.5-11 chr3 188608925 188609147 + 3 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -40370 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 378-15 chr2 136293890 136294051 + 3 NA Intergenic Intergenic -175815 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 741-3 chr2 205635657 205636060 + 3 NA Intergenic Intergenic -46642 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 670.5-4 chr6 39644218 39644506 + 3 NA intron (NM_001289020, intron 3 of 21) L1MB7|LINE|L1 81046 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 482.5-6 chr16 63481974 63482187 + 3 NA Intergenic Intergenic -1445642 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 512-6 chr13 63276332 63276511 + 3 NA intron (NR_126409, intron 2 of 6) L1M2|LINE|L1 51673 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 356-4 chr10 72424843 72424974 + 3 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -69989 NM_017626 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 652.5-5 chr5 2323013 2323407 + 3 NA Intergenic Intergenic -11009 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 584 chr10 3855437 3855703 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 21620 NR_134490 105376365 Hs.460114 NR_134490 ENSG00000230573 LINC02639 - long intergenic non-protein coding RNA 2639 ncRNA 883-5 chr5 27839996 27840695 + 3 NA Intergenic Intergenic 368053 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 1093.5 chr17 53292569 53293129 + 3 NA Intergenic Intergenic 307344 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 514.5-15 chr3 19888032 19888274 + 3 NA intron (NM_001330688, intron 12 of 14) intron (NM_001330688, intron 12 of 14) 46064 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 651-9 chr5 7580329 7580584 + 3 NA intron (NM_020546, intron 3 of 24) L1MEf|LINE|L1 184318 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 1059 chr14 87802201 87802666 + 3 NA Intergenic Intergenic -147139 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 493-4 chr13 40571956 40572152 + 3 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) -91048 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 439.5-17 chr2 145022068 145022221 + 3 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 354177 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 510-12 chr2 39312977 39313268 + 3 NA intron (NM_003618, intron 13 of 33) intron (NM_003618, intron 13 of 33) -69139 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 360-14 chr12 29943940 29944091 + 3 NA Intergenic L3|LINE|CR1 -159256 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 443-12 chr17 72976445 72976643 + 3 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 116144 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 319.5-30 chr8 62018022 62018183 + 3 NA Intergenic Intergenic 128263 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 390-16 chr20 15835534 15835732 + 3 NA intron (NM_001351663, intron 8 of 17) (AATATT)n|Simple_repeat|Simple_repeat 87681 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 607.5-16 chr8 65878789 65879085 + 3 NA Intergenic Intergenic -36873 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 415-25 chr6 55515425 55515669 + 3 NA intron (NR_109867, intron 3 of 3) MIRb|SINE|MIR 63667 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 391.5-33 chr5 69013666 69013869 + 3 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 16160 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 423.5-8 chr13 94772456 94772645 + 3 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 11609 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 578.5-7 chr19 48452605 48452883 + 3 NA exon (NM_031485, exon 7 of 7) exon (NM_031485, exon 7 of 7) -2963 NM_013348 3770 Hs.144011 NM_013348 ENSG00000182324 KCNJ14 IRK4|KIR2.4 potassium voltage-gated channel subfamily J member 14 protein-coding 272 chr1 147546581 147546724 + 3 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 5151 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 567-6 chr15 85528410 85528694 + 3 NA intron (NM_007200, intron 3 of 36) MIRb|SINE|MIR -91398 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 403.5-19 chr5 55313953 55314134 + 3 NA intron (NM_015360, intron 1 of 26) L1MC5a|LINE|L1 6054 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 371.5-15 chr2 14331861 14332007 + 3 NA intron (NR_103814, intron 1 of 3) L1MA1|LINE|L1 69024 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 174-14 chr2 178606937 178607127 + 3 NA exon (NM_133432, exon 107 of 192) exon (NM_133432, exon 107 of 192) 83841 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 697.5-8 chr3 74133926 74134267 + 3 NA Intergenic L1MA2|LINE|L1 324852 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 618-8 chr16 66405233 66405502 + 3 NA TTS (NM_001795) TTS (NM_001795) -3157 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 371-9 chr17 73540896 73541132 + 3 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 27331 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 651-14 chr9 77017747 77018146 + 3 NA Intergenic L2b|LINE|L2 -1709 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 455-17 chr2 40488976 40489320 + 3 NA intron (NM_001112802, intron 1 of 7) MIRb|SINE|MIR 23287 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 416-4 chr10 54831989 54832182 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -30794 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 828 chr10 51968327 51968797 + 3 NA intron (NM_001098512, intron 5 of 17) AluSx3|SINE|Alu -268967 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 567-19 chr7 111095514 111095926 + 3 NA intron (NM_018334, intron 1 of 1) intron (NM_018334, intron 1 of 1) 4593 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 583.5-11 chr4 10216459 10216768 + 3 NA Intergenic Intergenic -99814 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 420.5-2 chr10 51972914 51973099 + 3 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -273411 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 723-8 chr5 174150245 174150655 + 3 NA Intergenic Intergenic 104744 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 922 chr5 40723871 40724236 + 3 NA intron (NM_012382, intron 4 of 4) L1MB1|LINE|L1 31908 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 940.5 chr14 82893733 82894167 + 3 NA Intergenic MIR|SINE|MIR 251318 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 423-17 chr17 58928123 58928365 + 3 NA intron (NM_014906, intron 1 of 6) AluJo|SINE|Alu 172375 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 313.5-48 chrX 69027106 69027257 + 3 NA Intergenic Intergenic 138272 NM_022368 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 505.5-14 chr5 153380353 153380665 + 3 NA Intergenic Intergenic -110015 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 427-10 chr12 42988892 42989052 + 3 NA Intergenic Intergenic -166343 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 443-6 chr10 36046312 36046599 + 3 NA Intergenic L1MB8|LINE|L1 268153 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 603.5-2 chr15 51854773 51855035 + 3 NA intron (NM_014547, intron 1 of 9) intron (NM_014547, intron 1 of 9) 25251 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 622-3 chr13 41878078 41878589 + 3 NA intron (NM_001009814, intron 9 of 25) intron (NM_001009814, intron 9 of 25) 82752 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 552-13 chr2 77453714 77454031 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 68504 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 592.5-6 chr19 29976077 29976314 + 3 NA intron (NM_001252641, intron 2 of 10) MLT1H|LTR|ERVL-MaLR 33956 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 539-16 chr6 47914011 47914303 + 3 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 127089 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 397-4 chr10 94397250 94397556 + 3 NA Intergenic AluSc|SINE|Alu -5138 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 638-6 chr16 13393274 13393511 + 3 NA Intergenic Intergenic 491794 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 321-19 chr3 156730623 156730813 + 3 NA Intergenic Intergenic 54054 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 526-15 chr4 43013609 43013967 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 120522 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 409.5-3 chr11 111690937 111691115 + 3 NA intron (NM_015191, intron 4 of 14) intron (NM_015191, intron 4 of 14) 75363 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 440-33 chr6 47951530 47951731 + 3 NA intron (NM_207499, intron 2 of 2) L4_C_Mam|LINE|RTE-X 117059 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 448-6 chr12 13318367 13318610 + 3 NA Intergenic LTR33A|LTR|ERVL 58257 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 800-9 chr5 124061405 124061888 + 3 NA intron (NR_125774, intron 5 of 5) intron (NR_125774, intron 5 of 5) 376874 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 356-32 chr5 153832263 153832509 + 3 NA Intergenic Intergenic 66601 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 435-23 chr4 60843623 60843816 + 3 NA Intergenic Intergenic -78900 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 448-18 chr2 96710704 96710951 + 3 NA intron (NM_030805, intron 6 of 7) intron (NM_030805, intron 6 of 7) 29249 NM_030805 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 693-6 chr20 31454066 31454386 + 3 NA Intergenic L1MEg|LINE|L1 13594 NM_153324 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 255-12 chr2 66755656 66755816 + 3 NA Intergenic (TTGTT)n|Simple_repeat|Simple_repeat -52509 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 460-26 chrX 150513453 150513754 + 3 NA 3' UTR (NM_001177465, exon 5 of 5) 3' UTR (NM_001177465, exon 5 of 5) -54994 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 614-7 chr14 82257249 82257632 + 3 NA Intergenic Intergenic -385192 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 393-19 chr2 117542609 117542761 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -272006 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 597-25 chr8 143433936 143434353 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -3412 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 713 chr13 67945658 67946093 + 3 NA Intergenic Intergenic 573488 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 634.5-10 chr3 5974289 5974607 + 3 NA Intergenic Intergenic -724193 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 682.5-13 chr8 129743248 129743543 + 3 NA Intergenic L1MEc|LINE|L1 43229 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 374-26 chr4 145930934 145931282 + 3 NA intron (NM_178835, intron 1 of 14) intron (NM_178835, intron 1 of 14) 7715 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 588-2 chr10 12934692 12934960 + 3 NA intron (NM_001282658, intron 6 of 6) FLAM_C|SINE|Alu 66887 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 511-13 chr20 41813647 41813855 + 3 NA Intergenic L1ME3|LINE|L1 -195374 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 847.5 chr10 51565595 51565930 + 3 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 133833 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 491-28 chr8 19774193 19774539 + 3 NA Intergenic L1MEd|LINE|L1 -16337 NM_001354477 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 564.5-2 chr10 115049149 115049458 + 3 NA Intergenic Intergenic -44062 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 665-2 chr1 215487679 215488054 + 3 NA Intergenic Intergenic -79438 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 587.5-19 chr7 58064149 58064703 + 3 NA Intergenic Intergenic 614249 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 732-16 chrX 35766046 35766409 + 3 NA Intergenic Intergenic -32115 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 847.5-3 chr11 77634898 77635339 + 3 NA intron (NM_001293, intron 1 of 6) intron (NM_001293, intron 1 of 6) 2676 NM_001311202 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 473.5-4 chr12 3150010 3150249 + 3 NA intron (NM_006675, intron 2 of 8) L2b|LINE|L2 72750 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 455-21 chr21 45535537 45535743 + 3 NA promoter-TSS (NM_001205207) promoter-TSS (NM_001205207) -884 NM_001205207 6573 Hs.84190 NM_003056 ENSG00000173638 SLC19A1 CHMD|FOLT|IFC-1|IFC1|REFC|RFC|RFC1 solute carrier family 19 member 1 protein-coding 454-32 chr8 138535245 138535491 + 3 NA Intergenic Intergenic -37638 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 286-12 chr16 48854358 48854543 + 3 NA Intergenic Intergenic -244270 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 943-2 chr4 111202862 111203461 + 3 NA Intergenic L1M5|LINE|L1 -342514 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 414-43 chr8 81888367 81888546 + 3 NA Intergenic Intergenic -46170 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 582-11 chr16 8506062 8506347 + 3 NA Intergenic Intergenic 83634 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 353.5-21 chr5 111749428 111749545 + 3 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 6765 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 932.5-2 chr7 54847047 54847812 + 3 NA Intergenic Intergenic 88116 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 447-16 chr2 97930178 97930350 + 3 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 65684 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 695.5 chr1 169947291 169947783 + 3 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -53578 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 250-35 chr6 50518098 50518256 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -195367 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 357-13 chr14 71658415 71658647 + 3 NA intron (NM_001354286, intron 10 of 24) intron (NM_001354286, intron 10 of 24) 72233 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 403-14 chr12 56423169 56423493 + 3 NA exon (NM_001330295, exon 18 of 29) exon (NM_001330295, exon 18 of 29) 26095 NR_138471 8914 Hs.118631 NM_003920 ENSG00000111602 TIMELESS TIM|TIM1|hTIM timeless circadian regulator protein-coding 620-7 chr17 63191632 63191977 + 3 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 225569 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 648-16 chr8 86033868 86034189 + 3 NA Intergenic Intergenic 35640 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 320-4 chr10 116100461 116100599 + 3 NA intron (NM_145793, intron 4 of 8) L2b|LINE|L2 94259 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 533-25 chr8 94723826 94724128 + 3 NA intron (NM_181787, intron 1 of 18) intron (NM_181787, intron 1 of 18) 4077 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 470.5-2 chr11 32395271 32395501 + 3 NA intron (NR_160306, intron 7 of 9) intron (NR_160306, intron 7 of 9) 5014 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 531-20 chr2 219282549 219282809 + 3 NA intron (NM_001039550, intron 5 of 9) intron (NM_001039550, intron 5 of 9) 3313 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 630.5-8 chr3 97725405 97725718 + 3 NA intron (NM_001080448, intron 15 of 17) intron (NM_001080448, intron 15 of 17) -38960 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 381-29 chr7 80651717 80651955 + 3 NA intron (NM_001371079, intron 3 of 13) AluJb|SINE|Alu 5183 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 271-26 chr6 49362516 49362652 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 100669 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 472.5-16 chr5 172296413 172296643 + 3 NA intron (NR_130933, intron 1 of 1) intron (NR_130933, intron 1 of 1) 10931 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 453-18 chr21 39236768 39237030 + 3 NA intron (NM_018963, intron 22 of 41) intron (NM_018963, intron 22 of 41) -53385 NM_001261824 8624 Hs.473838 NM_003720 ENSG00000183527 PSMG1 C21LRP|DSCR2|LRPC21|PAC-1|PAC1 proteasome assembly chaperone 1 protein-coding 513-32 chr8 107879807 107880045 + 3 NA Intergenic Intergenic 202013 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 436-9 chr14 69820679 69820939 + 3 NA Intergenic L1PA11|LINE|L1 9049 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 765-9 chr8 129786757 129787228 + 3 NA promoter-TSS (NM_031415) promoter-TSS (NM_031415) -368 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 539-6 chr15 98327204 98327638 + 3 NA non-coding (NR_146566, exon 2 of 3) non-coding (NR_146566, exon 2 of 3) 4137 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 588-3 chr10 60376712 60377014 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 13012 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 362-15 chr19 14138405 14138673 + 3 NA intron (NR_045214, intron 1 of 2) intron (NR_045214, intron 1 of 2) 1387 NR_045214 100507373 Hs.720437 NR_045214 ENSG00000267169 LOC100507373 - uncharacterized LOC100507373 ncRNA 325.5-2 chr1 112887635 112887849 + 3 NA Intergenic LTR67B|LTR|ERVL 5692 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 336-39 chr4 12891848 12892107 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 592363 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 561-5 chr10 75413703 75413983 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 4686 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 849-6 chr9 29266080 29266534 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -52706 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 592.5-16 chr8 102672210 102672509 + 3 NA intron (NR_160672, intron 3 of 4) Tigger18a|DNA|TcMar-Tigger 16111 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 592.5-11 chr3 177510852 177511201 + 3 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 69105 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 509-13 chr21 16147309 16147510 + 3 NA intron (NR_111005, intron 1 of 6) Tigger1|DNA|TcMar-Tigger -33989 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 653-8 chr5 21849057 21849344 + 3 NA intron (NM_001317228, intron 4 of 11) L3|LINE|CR1 -35254 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 514.5-17 chr5 4875568 4875892 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 102249 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 409-19 chr21 44946058 44946313 + 3 NA intron (NM_001316986, intron 2 of 4) intron (NM_001316986, intron 2 of 4) 6156 NM_058190 85395 Hs.410830 NM_058190 ENSG00000160256 FAM207A C21orf70|PRED56 family with sequence similarity 207 member A protein-coding 392-23 chr3 39547863 39548096 + 3 NA Intergenic MIRb|SINE|MIR 45913 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 317-24 chr6 105722526 105722698 + 3 NA Intergenic L1ME1|LINE|L1 -319530 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 342-33 chr6 142649948 142650206 + 3 NA Intergenic Intergenic -12188 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 533.5-2 chr12 12912114 12912362 + 3 NA intron (NM_003979, intron 3 of 3) intron (NM_003979, intron 3 of 3) -3591 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 757-7 chr5 43785400 43785829 + 3 NA Intergenic Intergenic -182384 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 597-4 chr14 53991342 53991618 + 3 NA Intergenic Intergenic -34589 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 460-3 chr10 84723330 84723621 + 3 NA Intergenic MER21B|LTR|ERVL 298306 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 728.5-9 chr6 162933839 162934161 + 3 NA intron (NM_001080379, intron 2 of 4) AluSx|SINE|Alu 120161 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 787.5-5 chr2 101679315 101679719 + 3 NA Intergenic Intergenic -18186 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 560-13 chr3 103190025 103190403 + 3 NA Intergenic Intergenic 333902 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 528-9 chr13 22187392 22187642 + 3 NA Intergenic Intergenic -22768 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 496.5-16 chr8 117299999 117300222 + 3 NA Intergenic Intergenic 165115 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 598-10 chr5 117652303 117652648 + 3 NA Intergenic Intergenic -77886 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 777 chr11 91345042 91345332 + 3 NA Intergenic Intergenic -475985 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 513-8 chr12 72385518 72385711 + 3 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -112105 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 419-18 chr2 142566036 142566242 + 3 NA Intergenic Intergenic -311525 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 538.5-7 chr14 82038355 82038648 + 3 NA Intergenic Intergenic -295363 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 587-17 chr8 133980883 133981121 + 3 NA Intergenic MIRb|SINE|MIR 94506 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 630-17 chr7 20990853 20991268 + 3 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 155629 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 687-2 chr1 241562304 241562603 + 3 NA intron (NM_003679, intron 7 of 14) intron (NM_003679, intron 7 of 14) 30075 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 648-12 chr6 56739964 56740381 + 3 NA intron (NM_001144770, intron 2 of 94) MER41A|LTR|ERV1 -97283 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 192-7 chr14 77405589 77405670 + 3 NA intron (NM_001113475, intron 5 of 5) L1ME4b|LINE|L1 17427 NM_001113475 122945 Hs.97556 NM_138791 ENSG00000165555 NOXRED1 C14orf148 NADP dependent oxidoreductase domain containing 1 protein-coding 996 chr14 50200191 50200914 + 3 NA intron (NM_006939, intron 3 of 22) intron (NM_006939, intron 3 of 22) 31026 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 440.5-6 chr11 81046451 81046833 + 3 NA Intergenic MIRb|SINE|MIR -283839 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 322.5-10 chr18 13773018 13773185 + 3 NA Intergenic L1ME3A|LINE|L1 46428 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 440-28 chr4 56149152 56149426 + 3 NA Intergenic Intergenic -20906 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 492-27 chr6 10395489 10395785 + 3 NA Intergenic Intergenic -8865 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 456.5-14 chr4 25617878 25618333 + 3 NA Intergenic AluYc|SINE|Alu -37746 NM_006424 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 820.5-4 chr5 99189414 99189814 + 3 NA Intergenic Intergenic -259900 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 431-29 chr8 138782357 138782593 + 3 NA intron (NM_152888, intron 12 of 64) AluJb|SINE|Alu 131566 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 771-2 chr11 79382556 79382889 + 3 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 19387 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 566-18 chr8 123349891 123350117 + 3 NA intron (NM_014109, intron 13 of 27) AluJr|SINE|Alu -1874 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 307-7 chr11 69330534 69330663 + 3 NA Intergenic L1ME1|LINE|L1 36443 NM_001293294 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 365-12 chr18 3521455 3521615 + 3 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 55285 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 431-5 chr10 105416021 105416242 + 3 NA Intergenic Intergenic 404202 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 303-34 chr8 102132255 102132427 + 3 NA Intergenic L1MA7|LINE|L1 6909 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 298-31 chr8 128405749 128405953 + 3 NA non-coding (NR_121672, exon 8 of 8) non-coding (NR_121672, exon 8 of 8) 158828 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 528-32 chr8 14247959 14248314 + 3 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 605374 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 456-36 chr8 120909910 120910176 + 3 NA Intergenic Intergenic -97997 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 539.5-6 chr11 82226666 82227099 + 3 NA intron (NR_120571, intron 3 of 7) L2b|LINE|L2 177031 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 600-5 chr1 118724064 118724429 + 3 NA Intergenic L1MB1|LINE|L1 264097 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 342-34 chr7 6180589 6180728 + 3 NA intron (NM_001367581, intron 4 of 13) MLT1C|LTR|ERVL-MaLR -8521 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 306-37 chr9 92736261 92736464 + 3 NA intron (NM_001003800, intron 1 of 6) MER41B|LTR|ERV1 28471 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|SMALED2A|SMALED2B|bA526D8.1 BICD cargo adaptor 2 protein-coding 499.5 chr1 193994632 193994891 + 3 NA Intergenic L1MA4|LINE|L1 690016 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 234.5-24 chr4 87868760 87868963 + 3 NA Intergenic MER34C2|LTR|ERV1 34158 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 807-7 chr2 52468152 52468614 + 3 NA Intergenic LTR48|LTR|ERV1 97735 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 572-12 chr3 4487195 4487460 + 3 NA Intergenic L1MA6|LINE|L1 5836 NR_108075 100996539 Hs.190365 NR_108075 ITPR1-DT ITPR1-AS1 ITPR1 divergent transcript ncRNA 235-10 chr14 46357250 46357399 + 3 NA intron (NR_102702, intron 3 of 3) Charlie25|DNA|hAT-Charlie -114035 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 594-13 chr5 113081869 113082230 + 3 NA intron (NM_001085377, intron 11 of 18) intron (NM_001085377, intron 11 of 18) 105251 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 468.5-5 chr18 57362742 57362990 + 3 NA 3' UTR (NM_015879, exon 4 of 4) 3' UTR (NM_015879, exon 4 of 4) 10309 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 478.5-15 chr3 191396562 191396901 + 3 NA 3' UTR (NM_174908, exon 11 of 11) 3' UTR (NM_174908, exon 11 of 11) -28793 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 559.5-2 chr10 118959579 118959827 + 3 NA Intergenic L2c|LINE|L2 -70011 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 517.5-5 chr13 59552571 59552851 + 3 NA Intergenic L1MA6|LINE|L1 -460007 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 480-23 chr3 22369777 22369997 + 3 NA Intergenic Intergenic 412748 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 655-15 chr6 37703909 37704256 + 3 NA Intergenic Intergenic -6199 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 316-21 chr20 32383767 32383970 + 3 NA intron (NM_015338, intron 3 of 11) intron (NM_015338, intron 3 of 11) 24803 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 1018.5 chr2 192614944 192615331 + 3 NA Intergenic Intergenic -134708 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 400.5 chr1 52974311 52974486 + 3 NA intron (NM_001193600, intron 5 of 14) intron (NM_001193600, intron 5 of 14) -40539 NM_001007099 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 789-5 chr5 103914394 103914771 + 3 NA Intergenic Intergenic -351793 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 453-2 chr1 205927888 205928072 + 3 NA exon (NM_134325, exon 9 of 22) exon (NM_134325, exon 9 of 22) -6933 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 743-4 chr22 24161833 24162146 + 3 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -19498 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 560.5-11 chr7 26312763 26313107 + 3 NA intron (NM_001318199, intron 1 of 6) L1ME4b|LINE|L1 19904 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 557-18 chr4 101815959 101816441 + 3 NA intron (NM_001083907, intron 1 of 16) intron (NM_001083907, intron 1 of 16) 2358 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 565.5-18 chrX 86945037 86945315 + 3 NA Intergenic Intergenic -572626 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 378-20 chr4 114338947 114339136 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -259361 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 597-9 chr17 15781760 15782023 + 3 NA Intergenic L1ME3G|LINE|L1 -4959 NR_002211 4213 Hs.356135 NR_002211 MEIS3P1 MEIS3|MEIS4|MRG2 Meis homeobox 3 pseudogene 1 pseudo 771-8 chr18 8299478 8299940 + 3 NA intron (NM_002845, intron 18 of 30) MER58A|DNA|hAT-Charlie 67325 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 465-22 chr17 63189450 63189625 + 3 NA intron (NM_025185, intron 4 of 25) L1MB7|LINE|L1 223302 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 506-3 chr1 118189847 118190318 + 3 NA Intergenic Intergenic -4854 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 667-5 chr7 67681309 67681749 + 3 NA Intergenic L2|LINE|L2 -338724 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 625.5-8 chr20 63137601 63137948 + 3 NA Intergenic L1MB7|LINE|L1 -35455 NR_003245 768097 Hs.635159 NR_003245 ENSG00000231133 HAR1B HAR1R|LINC00065|NCRNA00065 highly accelerated region 1B ncRNA 660-19 chr8 105688728 105689150 + 3 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 369396 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 294-14 chr14 55388553 55388748 + 3 NA intron (NM_014924, intron 4 of 9) intron (NM_014924, intron 4 of 9) 23208 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 360-24 chr2 227046441 227046657 + 3 NA intron (NM_000092, intron 35 of 47) L1M5|LINE|L1 118010 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 484.5-11 chr2 69438074 69438348 + 3 NA promoter-TSS (NM_015700) promoter-TSS (NM_015700) -583 NM_001002756 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 263-11 chr18 3464167 3464284 + 3 NA Intergenic Intergenic -2025 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 593-14 chr4 94547631 94548023 + 3 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 95885 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 613-12 chrX 40918614 40918925 + 3 NA Intergenic L1MD3|LINE|L1 -85573 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 701.5-5 chr8 131007597 131007932 + 3 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 33145 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 304.5-21 chr15 88847729 88847884 + 3 NA intron (NM_001369268, intron 8 of 18) intron (NM_001369268, intron 8 of 18) 44363 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 407-15 chr14 21782078 21782339 + 3 NA Intergenic AluSg|SINE|Alu -111191 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 644-2 chr14 64963342 64963629 + 3 NA intron (NM_001330182, intron 1 of 7) intron (NM_001330182, intron 1 of 7) 8851 NM_001330182 376267 Hs.512492 NM_198686 ENSG00000139998 RAB15 - RAB15, member RAS oncogene family protein-coding 736-10 chr4 87511684 87511951 + 3 NA intron (NM_001128310, intron 1 of 11) L2c|LINE|L2 17686 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 800-2 chr1 93055225 93055643 + 3 NA Intergenic L1MC2|LINE|L1 -23801 NM_001164392 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 581-9 chr22 28353143 28353655 + 3 NA intron (NM_001145418, intron 2 of 22) L1MB4|LINE|L1 -106470 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 481-9 chr2 31006248 31006428 + 3 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 123302 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 625.5-6 chr19 55511310 55511591 + 3 NA intron (NM_001144950, intron 12 of 13) intron (NM_001144950, intron 12 of 13) 23014 NM_001144950 284297 Hs.554182 NM_182571 ENSG00000179954 SSC5D S5D-SRCRB scavenger receptor cysteine rich family member with 5 domains protein-coding 474-39 chr9 80507134 80507320 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 532204 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 744-8 chr18 13428063 13428488 + 3 NA promoter-TSS (NR_040031) promoter-TSS (NR_040031) -741 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 354-26 chr6 40656033 40656243 + 3 NA Intergenic Intergenic -68774 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 479-2 chr10 58779696 58779992 + 3 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 64829 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 364-5 chr10 73499642 73500009 + 3 NA intron (NR_132104, intron 3 of 4) MER20|DNA|hAT-Charlie -3801 NM_001289968 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 275.5-2 chr1 36062245 36062401 + 3 NA 3' UTR (NM_024852, exon 19 of 19) 3' UTR (NM_024852, exon 19 of 19) -21771 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 657.5-9 chr22 38817264 38817682 + 3 NA TTS (NM_014293) TTS (NM_014293) -23330 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 699-14 chr9 7587270 7587717 + 3 NA Intergenic Intergenic 212285 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 1082 chr17 77171333 77172001 + 3 NA intron (NM_001143999, intron 3 of 16) HERVIP10B3-int|LTR|ERV1 -13546 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 385.5-6 chr11 73699615 73699920 + 3 NA intron (NM_001243718, intron 3 of 4) intron (NM_001243718, intron 3 of 4) 50854 NM_001130036 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 545-8 chr11 96302629 96302819 + 3 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -38714 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 441-38 chr7 49474325 49474651 + 3 NA Intergenic L1ME3B|LINE|L1 -299150 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 578-4 chr10 72948823 72949106 + 3 NA intron (NM_001318124, intron 1 of 3) intron (NM_001318124, intron 1 of 3) 5842 NM_032562 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 549-5 chr14 56572899 56573191 + 3 NA Intergenic AluSq2|SINE|Alu -6753 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 514.5-14 chr20 39015859 39016038 + 3 NA intron (NM_021931, intron 14 of 21) L1MB8|LINE|L1 53604 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 443.5-8 chr17 6959886 6960065 + 3 NA Intergenic L1PA3|LINE|L1 -36074 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 399-22 chr20 10088049 10088307 + 3 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 53191 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 378-24 chr5 163003859 163004036 + 3 NA Intergenic Intergenic -433624 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 409-3 chr10 102413663 102413835 + 3 NA intron (NM_002779, intron 5 of 16) intron (NM_002779, intron 5 of 16) -4472 NR_073110 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding 705-7 chr5 102698713 102699088 + 3 NA Intergenic Intergenic -27436 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 388-30 chr5 166954643 166954788 + 3 NA Intergenic Intergenic -28345 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 607.5-10 chr2 113046687 113046896 + 3 NA intron (NM_173178, intron 1 of 4) L1MC3|LINE|L1 6076 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 471-25 chr3 179543151 179543509 + 3 NA Intergenic L1MA4|LINE|L1 -19550 NM_177989 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 334.5-16 chr20 32497531 32497750 + 3 NA intron (NM_001256798, intron 4 of 10) intron (NM_001256798, intron 4 of 10) -12319 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 922.5-2 chr8 72006673 72007061 + 3 NA intron (NR_033652, intron 4 of 4) L1PB3|LINE|L1 68717 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 318-4 chr10 10824823 10825022 + 3 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 26197 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 768-2 chr6 113622336 113622715 + 3 NA Intergenic L2c|LINE|L2 27550 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 425.5-8 chr16 74244262 74244447 + 3 NA Intergenic Intergenic -28833 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 624.5-8 chr2 121863971 121864314 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 108491 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 436-6 chr12 7096742 7096915 + 3 NA exon (NM_016546, exon 6 of 6) exon (NM_016546, exon 6 of 6) -4383 NM_001733 715 Hs.524224 NM_001733 ENSG00000159403 C1R EDSPD1 complement C1r protein-coding 508.5-16 chr4 37376288 37376575 + 3 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -77494 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 454-26 chr6 54814378 54814620 + 3 NA Intergenic MIR1_Amn|SINE|MIR -32272 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 370-8 chr11 108773202 108773404 + 3 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 108234 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 594-12 chr5 109509745 109509958 + 3 NA Intergenic Intergenic -99877 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 551.5-3 chr17 82364589 82364985 + 3 NA Intergenic AluSg|SINE|Alu 5540 NM_207459 400629 Hs.231897 NM_207459 ENSG00000182459 TEX19 - testis expressed 19 protein-coding 260.5-7 chr11 112292417 112292528 + 3 NA intron (NR_126004, intron 1 of 3) L1M6|LINE|L1 21723 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 682-5 chr12 71040618 71040938 + 3 NA Intergenic Intergenic 117031 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 451-18 chr5 115147720 115147926 + 3 NA intron (NM_001300752, intron 1 of 8) intron (NM_001300752, intron 1 of 8) 22085 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 522-22 chr3 85788517 85788734 + 3 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 39425 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 413-29 chr3 52902800 52903069 + 3 NA TTS (NM_016329) TTS (NM_016329) -5386 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 575.5-5 chr3 23094511 23094877 + 3 NA Intergenic Intergenic 107884 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 267-29 chr3 114049887 114050009 + 3 NA intron (NM_001353766, intron 1 of 15) L2a|LINE|L2 6578 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 749-3 chr22 26844400 26844693 + 3 NA Intergenic L1ME4a|LINE|L1 -15665 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 468-23 chr3 39103161 39103396 + 3 NA intron (NR_103866, intron 2 of 8) intron (NR_103866, intron 2 of 8) 4349 NR_103867 64689 Hs.721946 NM_031899 ENSG00000114745 GORASP1 GOLPH5|GRASP65|P65 golgi reassembly stacking protein 1 protein-coding 385.5-15 chr15 64406815 64407031 + 3 NA intron (NM_001321924, intron 6 of 12) intron (NM_001321924, intron 6 of 12) 19087 NR_135855 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 464-13 chr2 24669181 24669371 + 3 NA intron (NM_001362950, intron 6 of 23) MLT1J|LTR|ERVL-MaLR 84799 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 603-4 chr14 54415337 54415558 + 3 NA intron (NM_001330173, intron 5 of 8) MIR|SINE|MIR 18440 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 490-22 chr4 32028098 32028357 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -5805 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 304.5-22 chr16 77196948 77197075 + 3 NA intron (NM_014940, intron 5 of 5) L1MC4|LINE|L1 -2397 NM_001129979 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 460.5-31 chr8 12806534 12806785 + 3 NA intron (NR_102423, intron 1 of 1) intron (NR_102423, intron 1 of 1) 4819 NR_152742 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 732-14 chr5 68404011 68404402 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 111629 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 789.5-8 chr5 9757535 9757862 + 3 NA intron (NR_027112, intron 5 of 12) LTR37-int|LTR|ERV1 -96679 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 542-22 chr7 54609425 54609740 + 3 NA Intergenic L1M5|LINE|L1 52612 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 445.5-7 chr18 69584223 69584399 + 3 NA intron (NM_152721, intron 2 of 7) AluSz|SINE|Alu 114380 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 357-38 chr7 6640299 6640431 + 3 NA intron (NM_001278559, intron 3 of 8) MSTA|LTR|ERVL-MaLR 3047 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 390.5-20 chr20 59304920 59305234 + 3 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 4466 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 450-23 chr8 108172731 108172941 + 3 NA Intergenic L1ME1|LINE|L1 75881 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 896-5 chr8 108969121 108969529 + 3 NA Intergenic Intergenic -117303 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 529.5-14 chr18 13602782 13603038 + 3 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -8204 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 548.5-9 chr2 125725897 125726120 + 3 NA Intergenic Intergenic 391977 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 327-34 chr4 43904180 43904356 + 3 NA Intergenic HUERS-P2-int|LTR|ERV1 -112593 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 329-36 chr8 122371834 122371971 + 3 NA Intergenic Intergenic 196742 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 246.5-7 chr12 17234273 17234436 + 3 NA Intergenic Intergenic 245607 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 465 chr1 12385208 12385455 + 3 NA exon (NM_018156, exon 58 of 69) exon (NM_018156, exon 58 of 69) -121915 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 696-12 chr5 72143778 72144195 + 3 NA intron (NM_005909, intron 2 of 6) MLT1C|LTR|ERVL-MaLR -25481 NR_039967 100616377 NR_039967 ENSG00000264099 MIR4803 - microRNA 4803 ncRNA 646.5-7 chr2 39082904 39083136 + 3 NA intron (NM_005633, intron 1 of 22) MER65C|LTR|ERV1 37443 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 743 chr10 102282927 102283319 + 3 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 37591 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 414.5 chr1 18336807 18336959 + 3 NA intron (NM_032880, intron 4 of 9) THE1B|LTR|ERVL-MaLR -144047 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 369-36 chr6 55227296 55227527 + 3 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -100058 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 720.5-4 chr14 70066219 70066764 + 3 NA intron (NM_033262, intron 2 of 7) L2a|LINE|L2 13726 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 705-4 chr2 76858023 76858477 + 3 NA intron (NR_146416, intron 1 of 1) MLT2B4|LTR|ERVL -127715 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 371-17 chr3 102332061 102332279 + 3 NA Intergenic MIR3|SINE|MIR -102845 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 487-30 chr5 30341224 30341459 + 3 NA Intergenic Intergenic 460781 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 807 chr10 57217182 57217536 + 3 NA Intergenic Intergenic 87200 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 418.5-12 chr17 71218738 71218947 + 3 NA Intergenic L1MD1|LINE|L1 -16663 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 556.5-23 chr9 38683323 38683589 + 3 NA Intergenic Intergenic 62368 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 502-19 chr7 11740315 11740524 + 3 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 91779 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 283-28 chr22 27934309 27934456 + 3 NA intron (NR_026963, intron 1 of 4) THE1B|LTR|ERVL-MaLR -13770 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 340.5-15 chr2 105190807 105191056 + 3 NA Intergenic L1MEd|LINE|L1 46818 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 632-8 chr3 44881400 44881623 + 3 NA intron (NM_003241, intron 1 of 13) MSTC|LTR|ERVL-MaLR 6903 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 479-18 chr3 95919629 95919998 + 3 NA Intergenic Intergenic -236620 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 334.5-12 chr2 75464845 75464975 + 3 NA Intergenic Intergenic -59158 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 588-11 chr13 20115551 20115807 + 3 NA Intergenic AluSx1|SINE|Alu 12978 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 363-35 chr8 112250649 112250859 + 3 NA intron (NM_001363185, intron 59 of 66) intron (NM_001363185, intron 59 of 66) -392739 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 374-20 chr2 196088535 196088671 + 3 NA Intergenic L1M4a1|LINE|L1 -19766 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 598.5-10 chr5 108369472 108369701 + 3 NA intron (NM_001163315, intron 1 of 8) intron (NM_001163315, intron 1 of 8) 12512 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 472.5-7 chr2 16244199 16244463 + 3 NA Intergenic Intergenic 193904 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 435.5-19 chr7 96765476 96765787 + 3 NA Intergenic MIR|SINE|MIR -55740 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 474-28 chr5 168637763 168638033 + 3 NA Intergenic Intergenic -58530 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 625 chr1 113454370 113454780 + 3 NA intron (NM_001142782, intron 1 of 20) L1PA7|LINE|L1 64060 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 380.5-10 chr13 90461917 90462133 + 3 NA Intergenic Intergenic -31263 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 474-20 chr4 44511754 44512034 + 3 NA Intergenic Intergenic -63085 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 471.5-9 chr13 45840795 45841123 + 3 NA intron (NM_198849, intron 1 of 1) MIR|SINE|MIR 10794 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 626-12 chr21 26465402 26465651 + 3 NA TTS (NM_001320768) TTS (NM_001320768) 59583 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 402-32 chr7 38790360 38790581 + 3 NA intron (NM_014396, intron 9 of 28) MER2B|DNA|TcMar-Tigger -103381 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 1407.5 chr8 125165237 125165912 + 3 NA intron (NR_146191, intron 5 of 8) intron (NR_146191, intron 5 of 8) 73714 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 367-13 chr13 55954092 55954294 + 3 NA Intergenic OldhAT1|DNA|hAT-Ac 779739 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 433.5-27 chr6 46819511 46819755 + 3 NA exon (NM_005588, exon 7 of 14) exon (NM_005588, exon 7 of 14) 26244 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 542.5-6 chr11 134675298 134675772 + 3 NA Intergenic L1MEg|LINE|L1 -60410 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 745.5-4 chr11 30565627 30565942 + 3 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 14709 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 327-14 chr14 43521073 43521216 + 3 NA Intergenic L1MC3|LINE|L1 986139 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 337-5 chr10 32875709 32875933 + 3 NA intron (NM_001321115, intron 42 of 43) intron (NM_001321115, intron 42 of 43) 25651 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 345-2 chr1 99370880 99371049 + 3 NA Intergenic Intergenic 106672 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 586-2 chr10 127247884 127248435 + 3 NA intron (NM_001290223, intron 28 of 51) intron (NM_001290223, intron 28 of 51) -51568 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 504-14 chr2 126785022 126785297 + 3 NA Intergenic Intergenic -113731 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 666-11 chr6 149496232 149496678 + 3 NA Intergenic L1MD1|LINE|L1 -11441 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 375-4 chr1 208609763 208609976 + 3 NA Intergenic MIR|SINE|MIR -118819 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 543-12 chr5 161906660 161906948 + 3 NA Intergenic MER31A|LTR|ERV1 56079 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 491-24 chr6 50151476 50151753 + 3 NA Intergenic Intergenic -101685 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 486-36 chr5 63797098 63797505 + 3 NA Intergenic MIR|SINE|MIR 164991 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 797-6 chr5 55012473 55012800 + 3 NA Intergenic L1PREC2|LINE|L1 11533 NR_104662 102467081 NR_104662 LOC102467081 - uncharacterized LOC102467081 ncRNA 535-22 chr7 42365475 42365791 + 3 NA Intergenic L1PA6|LINE|L1 -128424 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 807-8 chr3 41316730 41317053 + 3 NA intron (NR_136342, intron 33 of 34) L2a|LINE|L2 117386 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 405-23 chr4 48688899 48689146 + 3 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 91277 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 422-19 chr3 57461389 57461634 + 3 NA exon (NM_001366028, exon 19 of 74) exon (NM_001366028, exon 19 of 74) 82833 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 621-5 chr16 74884234 74884495 + 3 NA intron (NM_030581, intron 25 of 25) AluSz|SINE|Alu 100759 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 577.5-16 chr6 163360515 163360808 + 3 NA Intergenic L1MC3|LINE|L1 -13628 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 450-6 chr12 119098494 119098759 + 3 NA intron (NM_194286, intron 1 of 12) L2c|LINE|L2 77858 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 587-4 chr11 57698294 57698591 + 3 NA intron (NM_015457, intron 10 of 11) MIRb|SINE|MIR 13773 NR_157587 219541 Hs.43619 NM_153450 ENSG00000156603 MED19 DT2P1G7|LCMR1|MED19AS mediator complex subunit 19 protein-coding 375-3 chr1 180238777 180238951 + 3 NA intron (NM_033343, intron 1 of 5) intron (NM_033343, intron 1 of 5) 8600 NM_033343 89884 Hs.658487 NM_033343 ENSG00000121454 LHX4 CPHD4 LIM homeobox 4 protein-coding 440.5-25 chr9 10813019 10813247 + 3 NA Intergenic L2|LINE|L2 199927 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 715-5 chr3 67034050 67034438 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 35937 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 707.5-7 chr7 3822011 3822414 + 3 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -307473 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 550.5-2 chr1 248898089 248898373 + 3 NA Intergenic L1PA10|LINE|L1 -8004 NM_170725 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 345-26 chr20 51065369 51065527 + 3 NA Intergenic L1MC4|LINE|L1 -42341 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 326.5-22 chr20 57061822 57062112 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 -151729 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 334-13 chr17 47737432 47737607 + 3 NA intron (NM_013351, intron 1 of 5) intron (NM_013351, intron 1 of 5) 4283 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 819-7 chr4 142174025 142174431 + 3 NA intron (NM_001331040, intron 15 of 25) MIRb|SINE|MIR 537645 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 318-7 chr12 13784576 13784707 + 3 NA intron (NM_000834, intron 2 of 12) MLT1H|LTR|ERVL-MaLR 195715 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 257.5-29 chr4 4463397 4463569 + 3 NA intron (NM_016930, intron 2 of 10) intron (NM_016930, intron 2 of 10) -1511 NM_001346300 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 346-12 chr11 96435372 96435569 + 3 NA Intergenic L1MA8|LINE|L1 45457 NM_003772 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 754.5-6 chr8 47028251 47028670 + 3 NA Intergenic L2|LINE|L2 -160847 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 366-12 chr20 16211947 16212192 + 3 NA Intergenic Intergenic -226187 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 583-15 chr8 59399216 59399560 + 3 NA Intergenic L1MB3|LINE|L1 280178 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 402-35 chr7 79509980 79510175 + 3 NA Intergenic Intergenic 56117 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 307-11 chr12 80251488 80251703 + 3 NA intron (NM_001368062, intron 16 of 62) intron (NM_001368062, intron 16 of 62) 42142 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 458.5-19 chr9 116400659 116400811 + 3 NA promoter-TSS (NR_103711) promoter-TSS (NR_103711) -129 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 469.5-5 chr10 106933452 106933970 + 3 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 230995 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 641-10 chr5 114121217 114121529 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 -240697 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 264-21 chr5 158572416 158572626 + 3 NA Intergenic AluY|SINE|Alu -162748 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 581-14 chr4 138701240 138701654 + 3 NA Intergenic Intergenic 311199 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 538.5-9 chr18 445131 445456 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 55408 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 461-27 chr6 33528080 33528248 + 3 NA Intergenic AluSg|SINE|Alu 52112 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 488-12 chr22 20064889 20065110 + 3 NA non-coding (NR_104274, exon 7 of 7) non-coding (NR_104274, exon 7 of 7) -15233 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 329-31 chr6 89149722 89149939 + 3 NA intron (NM_001010853, intron 2 of 6) intron (NM_001010853, intron 2 of 6) 3775 NM_001010853 135293 Hs.356247 NM_001010853 ENSG00000146281 PM20D2 ACY1L2 peptidase M20 domain containing 2 protein-coding 318-32 chr4 92503640 92503827 + 3 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 199334 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 398-18 chr2 128740857 128741125 + 3 NA Intergenic L1MEh|LINE|L1 -123609 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 339.5-16 chr2 166450444 166450671 + 3 NA intron (NR_045628, intron 10 of 25) AluSc|SINE|Alu 36414 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 514.5-10 chr2 127082964 127083232 + 3 NA intron (NM_001320633, intron 1 of 14) AluJr|SINE|Alu -1033 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 830-4 chr3 21560880 21561244 + 3 NA intron (NR_046731, intron 1 of 2) L1PA7|LINE|L1 18273 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 527-22 chr4 113098071 113098314 + 3 NA intron (NM_001354232, intron 1 of 46) L1MC2|LINE|L1 -8671 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 284-27 chr4 58177556 58177696 + 3 NA Intergenic L1ME1|LINE|L1 358702 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 502-8 chr2 40502587 40502802 + 3 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 9741 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 256-19 chr3 126859739 126859883 + 3 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -128783 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 396-4 chr12 6447073 6447258 + 3 NA intron (NR_015382, intron 3 of 5) intron (NR_015382, intron 3 of 5) 2280 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 561-11 chr20 57841488 57841728 + 3 NA Intergenic Intergenic -130072 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 1338 chr17 75378332 75379059 + 3 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 26983 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 819-5 chr2 96573506 96573934 + 3 NA Intergenic Intergenic 35841 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 548-2 chr1 228434351 228434573 + 3 NA Intergenic Intergenic -9137 NM_003493 8290 Hs.248171 NM_003493 ENSG00000168148 HIST3H3 H3.4|H3/g|H3FT|H3t histone cluster 3 H3 protein-coding 554-21 chr3 187887508 187887820 + 3 NA Intergenic Intergenic 88743 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 658-2 chr11 92928417 92928663 + 3 NA Intergenic Intergenic -12912 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 856.5-7 chr9 18981125 18981515 + 3 NA intron (NM_001287049, intron 1 of 3) intron (NM_001287049, intron 1 of 3) 51889 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 290-9 chr14 70722773 70722926 + 3 NA 3' UTR (NM_001284230, exon 12 of 12) 3' UTR (NM_001284230, exon 12 of 12) 24151 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 534-20 chr22 28320967 28321209 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -138781 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 754.5-4 chr2 218451945 218452350 + 3 NA 3' UTR (NM_020935, exon 26 of 26) 3' UTR (NM_020935, exon 26 of 26) 33024 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 370.5-3 chr10 11318256 11318396 + 3 NA non-coding (NR_126062, exon 3 of 3) non-coding (NR_126062, exon 3 of 3) 26348 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 517-12 chr5 110997188 110997372 + 3 NA Intergenic Intergenic -72800 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 356-36 chr8 110623999 110624224 + 3 NA Intergenic Intergenic 403322 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 237-22 chr6 42585958 42586085 + 3 NA intron (NM_015255, intron 2 of 46) L1MEf|LINE|L1 21992 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 504-20 chr5 87367827 87368057 + 3 NA intron (NM_022650, intron 11 of 24) L1MEg|LINE|L1 -44314 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 328-16 chr15 54809085 54809300 + 3 NA Intergenic Intergenic -247555 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 639-9 chr2 136905392 136905743 + 3 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 140022 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 532-10 chr20 45614381 45614679 + 3 NA intron (NM_147198, intron 2 of 4) MIRc|SINE|MIR -15209 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 349.5-35 chr9 132304429 132304619 + 3 NA intron (NM_001351527, intron 11 of 25) L1MC4|LINE|L1 50332 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 515-12 chr2 203808295 203808640 + 3 NA Intergenic Intergenic -59304 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 425.5-2 chr1 64826722 64827037 + 3 NA intron (NM_001366165, intron 11 of 11) L2a|LINE|L2 81804 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 810.5-5 chr6 64396359 64396879 + 3 NA intron (NM_001292009, intron 28 of 43) L1ME3A|LINE|L1 589783 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 817.5-5 chr8 120345950 120346481 + 3 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 98935 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 559.5-11 chr2 164385865 164386110 + 3 NA Intergenic Intergenic 182508 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 774-7 chr9 19421417 19421844 + 3 NA intron (NM_001010887, intron 1 of 5) L1MB5|LINE|L1 12621 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 561-8 chr11 96904670 96905011 + 3 NA Intergenic Intergenic 396415 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 697.5-7 chr21 30489346 30489808 + 3 NA Intergenic Intergenic -2141 NM_181608 337969 Hs.553692 NM_181608 ENSG00000186965 KRTAP19-2 KAP19.2 keratin associated protein 19-2 protein-coding 490-13 chr2 23199132 23199497 + 3 NA Intergenic Intergenic -185865 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 502-17 chr6 11340083 11340539 + 3 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 42037 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 295-32 chr3 154030514 154030668 + 3 NA intron (NR_037901, intron 2 of 3) intron (NR_037901, intron 2 of 3) -90412 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 789.5-6 chr4 182002298 182002901 + 3 NA Intergenic Intergenic 141916 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 275-28 chr4 59309010 59309134 + 3 NA Intergenic Intergenic 295499 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 384.5-7 chr11 94414933 94415257 + 3 NA TTS (NM_005590) TTS (NM_005590) -13676 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 534-7 chr11 106804132 106804375 + 3 NA intron (NM_001256424, intron 5 of 8) intron (NM_001256424, intron 5 of 8) 214223 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 471-10 chr12 125347682 125347959 + 3 NA intron (NM_052907, intron 1 of 8) intron (NM_052907, intron 1 of 8) 21204 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 592-17 chr8 126323445 126323721 + 3 NA Intergenic L2|LINE|L2 -1912 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 413.5-22 chr7 48815784 48815933 + 3 NA Intergenic Intergenic -108689 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 431-18 chr20 54665104 54665360 + 3 NA Intergenic MER102c|DNA|hAT-Charlie 189639 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 541.5-18 chr7 2561323 2561521 + 3 NA intron (NM_001287501, intron 1 of 19) L1M4|LINE|L1 2443 NM_152558 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 466.5-14 chr22 28577129 28577294 + 3 NA intron (NM_001145418, intron 2 of 22) L1MA3|LINE|L1 102654 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 403.5-25 chr9 71628882 71629105 + 3 NA Intergenic Intergenic 139520 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 647.5-5 chr2 18722133 18722451 + 3 NA Intergenic Intergenic -132712 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 659-7 chr2 158158270 158158691 + 3 NA Intergenic Intergenic -8170 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 314-6 chr11 83503339 83503454 + 3 NA intron (NM_001142699, intron 21 of 27) (TA)n|Simple_repeat|Simple_repeat 179029 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 344-20 chr2 32724204 32724406 + 3 NA intron (NM_017735, intron 10 of 19) Charlie1a|DNA|hAT-Charlie 89050 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 342.5 chr1 163906712 163906840 + 3 NA Intergenic L1MA4|LINE|L1 -483585 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 751.5 chr15 94649155 94649532 + 3 NA Intergenic Intergenic -206020 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 312-10 chr2 20892759 20892922 + 3 NA Intergenic L1PA16|LINE|L1 -69710 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 468-40 chr6 51491475 51491815 + 3 NA Intergenic Intergenic -130225 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 401.5-17 chr20 53432976 53433341 + 3 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -119612 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 856.5-3 chr5 102691362 102691778 + 3 NA Intergenic L2b|LINE|L2 -20106 NR_103753 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 366-20 chr6 46768110 46768303 + 3 NA Intergenic L1ME1|LINE|L1 21289 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 443-31 chr5 114423860 114424172 + 3 NA intron (NM_021614, intron 3 of 7) intron (NM_021614, intron 3 of 7) -9495 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 338-19 chr2 127920829 127921040 + 3 NA Intergenic AluJb|SINE|Alu -34994 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 525-25 chr8 81177419 81177868 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -65575 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 475 chr10 25090169 25090351 + 3 NA Intergenic L1MA2|LINE|L1 -22798 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 475-8 chr15 56131681 56131895 + 3 NA intron (NM_001370561, intron 7 of 11) intron (NM_001370561, intron 7 of 11) 58144 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 346-31 chr5 76476718 76476925 + 3 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -70588 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 446-26 chr4 117312458 117312723 + 3 NA Intergenic Intergenic 48049 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 480-20 chr2 222673590 222673863 + 3 NA intron (NM_058165, intron 1 of 5) intron (NM_058165, intron 1 of 5) 2068 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 430.5-8 chr10 82656602 82656868 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -423815 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 446.5-14 chr4 19726734 19726981 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -525048 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 269-5 chr10 11869226 11869320 + 3 NA intron (NM_153256, intron 3 of 3) intron (NM_153256, intron 3 of 3) 25437 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 564-16 chr3 78830356 78830664 + 3 NA intron (NM_002941, intron 4 of 30) THE1C|LTR|ERVL-MaLR 188949 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 534-25 chr3 158108661 158108880 + 3 NA Intergenic Intergenic -1282 NM_001271834 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 511-15 chr3 88177904 88178175 + 3 NA Intergenic L1ME2z|LINE|L1 28080 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 506-11 chr15 56289521 56289774 + 3 NA Intergenic L1M2|LINE|L1 -44565 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 391.5-40 chr8 102854847 102855091 + 3 NA intron (NM_001363083, intron 2 of 12) intron (NM_001363083, intron 2 of 12) 9194 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 752-7 chrX 13363660 13364159 + 3 NA Intergenic Intergenic 28668 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 434.5-21 chr9 105969719 105970122 + 3 NA Intergenic Intergenic 275379 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 622-9 chr21 30344245 30344647 + 3 NA Intergenic LTR1A2|LTR|ERV1 4160 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 556.5-15 chr5 175162849 175163094 + 3 NA Intergenic Intergenic -167240 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 325-18 chr3 190280631 190280773 + 3 NA Intergenic Intergenic 41744 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 441-40 chrX 41911680 41911860 + 3 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 11264 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 333-13 chr2 352938 353146 + 3 NA Intergenic MIRb|SINE|MIR 36758 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 970.5 chr6 138981881 138982276 + 3 NA intron (NM_031922, intron 1 of 19) intron (NM_031922, intron 1 of 19) 6183 NM_001286612 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 351.5-23 chr7 14437843 14438235 + 3 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 403411 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 536-7 chr15 58303314 58303660 + 3 NA Intergenic MIR3|SINE|MIR -128504 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 369.5-13 chr2 39885644 39885794 + 3 NA Intergenic Intergenic -31915 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 363-22 chr3 150771962 150772149 + 3 NA Intergenic AluJo|SINE|Alu -8886 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 519.5-11 chr22 30374732 30374913 + 3 NA non-coding (NR_046312, exon 2 of 2) non-coding (NR_046312, exon 2 of 2) 3083 NR_046312 85371 Hs.505597 NR_046312 KIAA1656 - KIAA1656 protein ncRNA 402-13 chr12 93159662 93159806 + 3 NA intron (NR_040096, intron 3 of 4) MIR|SINE|MIR -14632 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 557-25 chr9 101901524 101901812 + 3 NA Intergenic Charlie19a|DNA|hAT-Charlie -163088 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 244.5-14 chr14 55290574 55290717 + 3 NA intron (NM_152231, intron 1 of 1) MLT1J|LTR|ERVL-MaLR 18491 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 591-8 chr20 25098842 25099274 + 3 NA Intergenic Intergenic -16679 NM_001256271 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 878-3 chr8 86409958 86410500 + 3 NA intron (NM_007013, intron 8 of 24) L1M4|LINE|L1 67682 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 546-17 chr9 90013543 90013855 + 3 NA Intergenic Intergenic 9836 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 614-2 chr10 11125656 11125927 + 3 NA intron (NM_001326345, intron 1 of 13) X2_LINE|LINE|CR1 -20303 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 614.5 chr11 85222192 85222431 + 3 NA intron (NM_001142699, intron 4 of 27) MIRb|SINE|MIR -298890 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 482-17 chr4 89378666 89378940 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -71003 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 485.5-25 chrX 48679375 48679653 + 3 NA Intergenic AluJb|SINE|Alu -4283 NM_000377 7454 Hs.2157 NM_000377 ENSG00000015285 WAS IMD2|SCNX|THC|THC1|WASP|WASPA WASP actin nucleation promoting factor protein-coding 644.5-5 chr3 29066155 29066369 + 3 NA Intergenic MER20|DNA|hAT-Charlie 214677 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 245-27 chr4 42921323 42921428 + 3 NA intron (NM_001080476, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 28109 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 728 chr10 124128891 124129167 + 3 NA Intergenic Intergenic -35431 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 555.5 chr12 33663803 33664078 + 3 NA Intergenic Intergenic -224121 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 293-17 chr3 111995599 111995739 + 3 NA Intergenic Intergenic -3070 NM_013259 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 466.5-26 chr8 136598365 136598714 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 67741 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 552.5-14 chr4 7410355 7410671 + 3 NA intron (NM_020777, intron 2 of 26) MIRb|SINE|MIR 24417 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin like 1 (gene/pseudogene) protein-coding 549-10 chr4 6439655 6439930 + 3 NA intron (NM_001206994, intron 2 of 9) intron (NM_001206994, intron 2 of 9) -18674 NM_001206996 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 528-34 chr8 120416934 120417255 + 3 NA intron (NM_014078, intron 5 of 6) L1MC4|LINE|L1 28056 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 389-5 chr11 43406038 43406446 + 3 NA intron (NM_001307943, intron 13 of 19) intron (NM_001307943, intron 13 of 19) 47322 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 233-20 chr4 41073185 41073319 + 3 NA intron (NM_173075, intron 3 of 16) intron (NM_173075, intron 3 of 16) 141290 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 414-27 chr3 180117191 180117436 + 3 NA Intergenic Intergenic -80376 NM_001256751 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 856.5-6 chr8 104446727 104447093 + 3 NA intron (NM_001385, intron 3 of 9) intron (NM_001385, intron 3 of 9) 20145 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 804-6 chr4 55995089 55995617 + 3 NA intron (NM_025009, intron 15 of 25) MER107|DNA|hAT-Charlie 46408 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 343-10 chr14 21498985 21499184 + 3 NA TTS (NM_014828) TTS (NM_014828) 12256 NM_019852 56339 Hs.168799 NM_019852 ENSG00000165819 METTL3 IME4|M6A|MT-A70|Spo8|hMETTL3 methyltransferase like 3 protein-coding 699-11 chr20 25651536 25651851 + 3 NA intron (NR_126465, intron 2 of 3) L1MA4|LINE|L1 27468 NR_126467 102724826 Hs.633621 NR_126465 ENSG00000213742 ZNF337-AS1 - ZNF337 antisense RNA 1 ncRNA 787.5-2 chr12 86613360 86613643 + 3 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 131648 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 333-37 chr7 94173904 94174051 + 3 NA Intergenic MER33|DNA|hAT-Charlie -169622 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 522-11 chr14 25395417 25395714 + 3 NA Intergenic Intergenic -345268 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 382.5-4 chr11 95719237 95719379 + 3 NA Intergenic Intergenic 70474 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 436-13 chr17 73113886 73114218 + 3 NA Intergenic AluJb|SINE|Alu -21364 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 633-8 chr5 27200173 27200512 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -161756 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 318-2 chr1 81950474 81950679 + 3 NA intron (NM_001366002, intron 7 of 20) intron (NM_001366002, intron 7 of 20) 148123 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 729 chr1 46984682 46985168 + 3 NA intron (NM_001320289, intron 1 of 11) L1PA7|LINE|L1 -19261 NM_001320290 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 483-4 chr10 61293509 61293739 + 3 NA Intergenic Charlie17|DNA|hAT-Charlie -159015 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 315-33 chr6 142521824 142521957 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 115946 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 479.5 chr10 30292361 30292650 + 3 NA Intergenic L1M3|LINE|L1 56833 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 413-2 chr1 108970059 108970227 + 3 NA TTS (NM_001142550) TTS (NM_001142550) -6644 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 643.5-8 chr20 52138939 52139362 + 3 NA intron (NM_199427, intron 5 of 8) L1PA16|LINE|L1 -33666 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 657-4 chr18 47380889 47381175 + 3 NA TTS (NR_039753) TTS (NR_039753) 536 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 541.5-16 chr22 24286510 24286872 + 3 NA intron (NM_015330, intron 2 of 16) intron (NM_015330, intron 2 of 16) 15860 NM_015330 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 312.5-19 chr3 82132258 82132424 + 3 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 146199 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 555-11 chr2 82077248 82077677 + 3 NA Intergenic Intergenic -610516 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 654.5 chr10 67572770 67573241 + 3 NA intron (NM_001127384, intron 3 of 17) AluJb|SINE|Alu 92655 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 545-25 chr8 127007331 127007603 + 3 NA Intergenic Intergenic -5687 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 565-12 chr4 133315688 133316079 + 3 NA Intergenic Intergenic 166589 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 769.5-2 chr1 118132068 118132399 + 3 NA intron (NM_206996, intron 3 of 48) L2c|LINE|L2 52995 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 373.5-20 chr5 65591664 65591839 + 3 NA 3' UTR (NM_001656, exon 11 of 11) 3' UTR (NM_001656, exon 11 of 11) 28455 NM_001278927 23398 Hs.121432 NM_015342 ENSG00000113593 PPWD1 - peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding 407.5-22 chr9 17583958 17584172 + 3 NA intron (NM_003026, intron 1 of 8) Charlie4z|DNA|hAT-Charlie 4999 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 380-23 chr6 56991332 56991531 + 3 NA intron (NM_001318539, intron 2 of 3) AluJb|SINE|Alu 36324 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 554 chr1 60135585 60135838 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -61941 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 542-12 chr15 88232320 88232596 + 3 NA intron (NM_001007156, intron 3 of 15) (GAATT)n|Simple_repeat|Simple_repeat -20272 NR_038229 283738 Hs.578429 NR_038229 ENSG00000260305 NTRK3-AS1 - NTRK3 antisense RNA 1 ncRNA 673.5-3 chr11 115559713 115560085 + 3 NA Intergenic Intergenic -55484 NM_001301044 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 454.5-17 chr5 137779005 137779232 + 3 NA Intergenic Intergenic -22075 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 412-6 chr10 88620007 88620222 + 3 NA Intergenic L1MC4a|LINE|L1 33352 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 786-10 chr9 27054021 27054528 + 3 NA intron (NM_025103, intron 16 of 19) L2c|LINE|L2 -48602 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 357-10 chr11 118147503 118147644 + 3 NA intron (NM_174934, intron 1 of 4) intron (NM_174934, intron 1 of 4) -2140 NR_024527 6330 Hs.65239 NM_174934 ENSG00000177098 SCN4B ATFB17|LQT10|Navbeta4 sodium voltage-gated channel beta subunit 4 protein-coding 455-5 chr10 125247606 125247834 + 3 NA Intergenic Intergenic -86690 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 621-19 chr8 81258157 81258466 + 3 NA Intergenic L2a|LINE|L2 -22225 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 577-3 chr12 24724638 24724982 + 3 NA Intergenic Intergenic -140642 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 455-8 chr12 15227868 15228091 + 3 NA Intergenic L1MEg|LINE|L1 -6562 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 713-5 chr7 24625316 24625672 + 3 NA intron (NM_016447, intron 3 of 12) MIRc|SINE|MIR 52042 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 776-2 chr21 23624470 23624837 + 3 NA Intergenic Intergenic -239818 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 282-6 chr1 110431839 110431945 + 3 NA Intergenic Intergenic -19257 NM_032414 84432 Hs.514793 NM_032414 ENSG00000143125 PROK1 EGVEGF|PK1|PRK1 prokineticin 1 protein-coding 204-21 chr7 19765252 19765402 + 3 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 7454 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 866 chr15 101585267 101585842 + 3 NA Intergenic L1MD1|LINE|L1 28785 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 800-10 chr8 119435009 119435330 + 3 NA Intergenic Intergenic 18723 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 635-7 chr3 80370606 80371313 + 3 NA Intergenic Intergenic -393938 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 421-31 chr6 39562394 39562538 + 3 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -131076 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 855-2 chr15 24797815 24798138 + 3 NA Intergenic MER41G|LTR|ERV1 -25632 NM_022807 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 583.5 chr1 114151388 114151641 + 3 NA intron (NM_001366225, intron 1 of 7) intron (NM_001366225, intron 1 of 7) 926 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 410-31 chr7 137556301 137556447 + 3 NA intron (NM_001321710, intron 19 of 32) L1M5|LINE|L1 -212641 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 529.5-24 chr8 123794896 123795117 + 3 NA intron (NM_144963, intron 15 of 23) Tigger2|DNA|TcMar-Tigger 26567 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 433-20 chr3 174991026 174991333 + 3 NA intron (NM_207015, intron 1 of 13) L2a|LINE|L2 124063 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 483-39 chr8 132328150 132328378 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 118998 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 417-4 chr1 204174836 204175078 + 3 NA Intergenic L2b|LINE|L2 -8620 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 501-25 chr9 2212848 2213128 + 3 NA Intergenic MIR3|SINE|MIR 54532 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 425-29 chr21 30056283 30056475 + 3 NA Intergenic Intergenic 110426 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 361.5-9 chr17 19246261 19246393 + 3 NA intron (NM_001102664, intron 1 of 7) AluSc|SINE|Alu 8950 NM_148921 22905 Hs.743983 NM_014964 ENSG00000072134 EPN2 EHB21 epsin 2 protein-coding 439.5-4 chr10 47321584 47321822 + 3 NA promoter-TSS (NM_016204) promoter-TSS (NM_016204) -751 NM_016204 2658 Hs.279463 NM_016204 ENSG00000263761 GDF2 BMP-9|BMP9|HHT5 growth differentiation factor 2 protein-coding 556.5 chr1 244051961 244052523 + 3 NA promoter-TSS (NM_006352) promoter-TSS (NM_006352) -963 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 766-8 chr5 74677220 74677651 + 3 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -7798 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 425-3 chr1 158598844 158599049 + 3 NA Intergenic L1MA4A|LINE|L1 -7493 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 467 chr1 58470560 58470792 + 3 NA Intergenic Intergenic 76050 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 477-5 chr13 64391748 64391969 + 3 NA Intergenic Intergenic -315847 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 604-5 chr10 129620633 129620944 + 3 NA intron (NM_002412, intron 2 of 4) L1PA16|LINE|L1 153547 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 822-4 chr3 41492145 41492516 + 3 NA intron (NR_136342, intron 30 of 34) L1PA3|LINE|L1 292825 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 353.5-23 chr8 29664187 29664384 + 3 NA Intergenic Intergenic 83824 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 396.5-10 chr14 56183962 56184199 + 3 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 65669 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 553-14 chr8 119370773 119371133 + 3 NA Intergenic Intergenic -45493 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 239.5-3 chr11 36624902 36625010 + 3 NA intron (NM_001276725, intron 2 of 3) MLT1J|LTR|ERVL-MaLR -26677 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 438-30 chr8 122050131 122050286 + 3 NA Intergenic Intergenic -408768 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 715.5-7 chr3 179172938 179173253 + 3 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 24738 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 457-11 chr2 172693303 172693538 + 3 NA Intergenic MIR|SINE|MIR -42425 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 526.5-12 chr20 49942951 49943245 + 3 NA intron (NM_018683, intron 2 of 5) intron (NM_018683, intron 2 of 5) 6701 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 371-2 chr10 35029357 35029601 + 3 NA intron (NM_003591, intron 15 of 20) intron (NM_003591, intron 15 of 20) 44804 NM_001324376 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 454-23 chr5 117333748 117334024 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -81626 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 748-3 chr2 62051698 62052075 + 3 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) -144229 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 555-4 chr11 111597728 111598060 + 3 NA Intergenic AluYc|SINE|Alu -4555 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 981-2 chr8 132615743 132616127 + 3 NA intron (NR_135913, intron 6 of 10) intron (NR_135913, intron 6 of 10) -54456 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 489-15 chr14 97758348 97758558 + 3 NA intron (NR_146447, intron 1 of 1) MIRc|SINE|MIR 4378 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 918-5 chr22 45166608 45167022 + 3 NA intron (NM_153645, intron 1 of 8) intron (NM_153645, intron 1 of 8) 2144 NM_153645 10762 Hs.475103 NM_007172 ENSG00000093000 NUP50 NPAP60|NPAP60L nucleoporin 50 protein-coding 688-2 chr13 106097293 106097591 + 3 NA Intergenic Intergenic -279122 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 586.5-3 chr11 83174041 83174320 + 3 NA intron (NM_001346413, intron 9 of 15) intron (NM_001346413, intron 9 of 15) 13304 NR_133914 106736475 Hs.595343 NR_133914 PCF11-AS1 - PCF11 antisense RNA 1 ncRNA 528-2 chr1 108109228 108109573 + 3 NA Intergenic Intergenic 83435 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 349.5-33 chr9 25745387 25745528 + 3 NA Intergenic L1ME3Cz|LINE|L1 -34599 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 361.5-18 chr21 18775516 18775721 + 3 NA Intergenic Intergenic -15806 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 554-6 chr10 60015961 60016339 + 3 NA Intergenic Intergenic -55237 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 587-2 chr10 91760630 91761002 + 3 NA Intergenic AluSx|SINE|Alu 37380 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 435-24 chr4 60936588 60936790 + 3 NA Intergenic Intergenic 14070 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 501-6 chr13 40231760 40232030 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -11393 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 354-25 chr6 26656291 26656521 + 3 NA intron (NM_001242799, intron 1 of 2) intron (NM_001242799, intron 1 of 2) 3340 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 655-12 chr3 189494619 189494973 + 3 NA Intergenic Intergenic -101950 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 240-44 chr7 116548645 116548806 + 3 NA intron (NM_001753, intron 2 of 2) intron (NM_001753, intron 2 of 2) 22363 NM_001172896 857 Hs.74034 NM_001753 ENSG00000105974 CAV1 BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21 caveolin 1 protein-coding 292-14 chr18 10733095 10733257 + 3 NA intron (NM_022068, intron 32 of 51) intron (NM_022068, intron 32 of 51) 26473 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 546.5-5 chr2 43643206 43643578 + 3 NA intron (NM_172069, intron 1 of 29) intron (NM_172069, intron 1 of 29) 6132 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 646.5-5 chr18 1768344 1768654 + 3 NA Intergenic Intergenic -408870 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 558.5-10 chr15 83956896 83957228 + 3 NA intron (NM_207517, intron 19 of 29) L2c|LINE|L2 -123125 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 256.5-4 chr11 81425493 81425659 + 3 NA Intergenic Intergenic 465260 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 528.5-10 chr2 223183783 223184104 + 3 NA Intergenic Intergenic 132013 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 655-13 chr4 63700681 63701150 + 3 NA Intergenic LTR28B|LTR|ERV1 708535 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 489-21 chr4 115303224 115303393 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -189688 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 432-11 chr17 72724282 72724573 + 3 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -83955 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 567-4 chr15 62734691 62735007 + 3 NA intron (NM_015059, intron 25 of 55) intron (NM_015059, intron 25 of 55) 87538 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 515-7 chr14 65359681 65359949 + 3 NA Intergenic L1MB3|LINE|L1 -24632 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 872-3 chr7 39925901 39926457 + 3 NA Intergenic Intergenic 23240 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 635-8 chr3 107898019 107898408 + 3 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 15008 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 523.5-4 chr13 70598354 70598549 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -416690 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 376.5-17 chr20 31064002 31064211 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -193558 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 525-16 chr20 58258907 58259156 + 3 NA intron (NR_003505, intron 4 of 16) intron (NR_003505, intron 4 of 16) -30378 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 611-2 chr12 115829605 115829900 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 318902 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 298-30 chr8 117354116 117354307 + 3 NA Intergenic L1ME2z|LINE|L1 -166502 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 368-7 chr12 24827119 24827349 + 3 NA intron (NM_001178091, intron 9 of 9) intron (NM_001178091, intron 9 of 9) 74988 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 698-8 chr2 232820890 232821377 + 3 NA intron (NM_015575, intron 23 of 30) L1M4|LINE|L1 -44568 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 779-2 chr17 71386825 71387243 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -184855 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 674.5-2 chr11 133411223 133411563 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 121108 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 319-24 chr21 36121327 36121577 + 3 NA intron (NR_040084, intron 1 of 3) AluJb|SINE|Alu 5188 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 869-2 chr17 5060971 5061459 + 3 NA Intergenic Intergenic -17252 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 390-6 chr15 77186208 77186410 + 3 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 39095 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 553.5-9 chr18 30255320 30255751 + 3 NA Intergenic L1PA8|LINE|L1 -43375 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 364-31 chr5 148968918 148969075 + 3 NA Intergenic Intergenic 93413 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 469.5-6 chr13 82587617 82587872 + 3 NA Intergenic Intergenic 1294649 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 500.5-12 chr3 114601909 114602474 + 3 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 22015 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 405-26 chr4 165632559 165632763 + 3 NA Intergenic Intergenic -51978 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 581-17 chr7 2946378 2946656 + 3 NA intron (NM_001324281, intron 4 of 25) intron (NM_001324281, intron 4 of 25) 97350 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 508.5-24 chr7 125056420 125056694 + 3 NA intron (NR_125718, intron 4 of 10) MIRb|SINE|MIR -126574 NR_003104 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 511.5-8 chr12 10587086 10587289 + 3 NA Intergenic L1ME1|LINE|L1 12648 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 484.5-7 chr10 106035957 106036147 + 3 NA Intergenic L1MCb|LINE|L1 -104113 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 497-8 chr18 57934590 57934766 + 3 NA Intergenic L1PA10|LINE|L1 -109548 NM_001144967 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 412-9 chr11 98172147 98172354 + 3 NA Intergenic Intergenic -848699 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 500-7 chr2 15225304 15225538 + 3 NA intron (NM_015909, intron 47 of 51) intron (NM_015909, intron 47 of 51) 335913 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 441-18 chr2 69947996 69948201 + 3 NA Intergenic AluJo|SINE|Alu 14167 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 358.5-11 chr2 55509075 55509224 + 3 NA Intergenic Intergenic -10446 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 498-15 chr2 128911985 128912276 + 3 NA Intergenic L1MC3|LINE|L1 47530 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 422.5-14 chr3 179692063 179692427 + 3 NA intron (NM_003940, intron 3 of 20) L1ME4a|LINE|L1 39205 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 392-22 chr21 25220999 25221287 + 3 NA Intergenic L1M1|LINE|L1 210558 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 493.5-19 chr8 54963768 54964088 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -138100 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 391.5-11 chr15 86723711 86723863 + 3 NA intron (NM_152336, intron 23 of 24) L2|LINE|L2 -209093 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 456-2 chr1 65235626 65235908 + 3 NA Intergenic L1MC4|LINE|L1 -28927 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 296-12 chr14 72045102 72045269 + 3 NA intron (NM_001370288, intron 2 of 16) MLT2B3|LTR|ERVL 111658 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 507-11 chr18 10332430 10332705 + 3 NA Intergenic Intergenic 81803 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 394-19 chr4 56695482 56695851 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13960 NM_139212 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 561-16 chr3 17089509 17089790 + 3 NA intron (NM_015184, intron 5 of 5) intron (NM_015184, intron 5 of 5) 156453 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 624-13 chr7 106385190 106385477 + 3 NA Intergenic L2b|LINE|L2 -100350 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 605-11 chr7 11119915 11120180 + 3 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 146175 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 466-13 chr15 42975910 42976142 + 3 NA intron (NM_174916, intron 39 of 46) intron (NM_174916, intron 39 of 46) -55248 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 534-13 chr2 6876005 6876388 + 3 NA Intergenic MER101-int|LTR|ERV1 -1581 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 402-27 chr5 171653500 171653754 + 3 NA Intergenic L1MEg|LINE|L1 -132245 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 475-30 chr8 79231479 79231677 + 3 NA Intergenic L1PB4|LINE|L1 -100610 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 559.5-17 chr7 89032772 89033063 + 3 NA intron (NM_181646, intron 1 of 3) L1MA7|LINE|L1 -237180 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 672-10 chr3 185439 185902 + 3 NA Intergenic Intergenic -10926 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 312-22 chr4 45163478 45163635 + 3 NA Intergenic L1MA10|LINE|L1 -436922 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 551-18 chr2 67869022 67869240 + 3 NA Intergenic Intergenic -43569 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 548 chr1 184093492 184093739 + 3 NA intron (NM_001363643, intron 3 of 3) intron (NM_001363643, intron 3 of 3) 41885 NM_001363643 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 361.5-29 chr7 25985488 25985674 + 3 NA Intergenic L2a|LINE|L2 -35595 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 349-8 chr10 68262779 68263000 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -30776 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 466-25 chr4 132428839 132429182 + 3 NA Intergenic L1PA16|LINE|L1 -162079 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 648-18 chrX 147683451 147683854 + 3 NA Intergenic L1PB2|LINE|L1 228165 NR_024501 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 638-7 chr2 47347082 47347463 + 3 NA Intergenic MLT2F|LTR|ERVL -2198 NR_110207 101927043 Hs.515976 NR_110207 ENSG00000234690 EPCAM-DT - EPCAM divergent transcript ncRNA 342-37 chr8 49543226 49543433 + 3 NA Intergenic Intergenic -31149 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 573-2 chr12 14078487 14078766 + 3 NA Intergenic MLT2B4|LTR|ERVL -98270 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 358-23 chr18 27991639 27991772 + 3 NA intron (NM_001308176, intron 8 of 14) MIR|SINE|MIR 44936 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 553.5-5 chr15 85519068 85519318 + 3 NA intron (NM_007200, intron 2 of 36) MER58B|DNA|hAT-Charlie -100757 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 500.5-7 chr2 197087445 197087746 + 3 NA intron (NM_001367496, intron 12 of 27) intron (NM_001367496, intron 12 of 27) -110396 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 385.5-35 chr3 99419000 99419209 + 3 NA Intergenic Intergenic -219490 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 695-5 chr12 30053342 30053720 + 3 NA Intergenic MIRc|SINE|MIR -268772 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 523.5-3 chr12 127412837 127413051 + 3 NA Intergenic Intergenic -72872 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 357-46 chr8 133914245 133914405 + 3 NA Intergenic Intergenic 27829 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 637-12 chr7 43085704 43086096 + 3 NA Intergenic L1MEc|LINE|L1 -26747 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 408-29 chr3 175804772 175804957 + 3 NA 3' UTR (NM_207015, exon 14 of 14) 3' UTR (NM_207015, exon 14 of 14) -28531 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 742 chr10 15702996 15703333 + 3 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 16758 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 504-9 chr11 111626203 111626592 + 3 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 23948 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 485 chr1 77037213 77037463 + 3 NA intron (NM_001320274, intron 2 of 2) L1PA16|LINE|L1 -22805 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 425-6 chr1 182492443 182492793 + 3 NA intron (NM_001366934, intron 9 of 22) intron (NM_001366934, intron 9 of 22) 42472 NM_001366934 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 930.5-3 chr7 17651141 17651542 + 3 NA Intergenic Intergenic -92432 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 507-13 chr2 179892386 179892678 + 3 NA Intergenic Intergenic -30920 NR_148057 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 580-16 chr7 38443562 38443918 + 3 NA intron (NM_001635, intron 11 of 20) L1ME1|LINE|L1 102163 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 371-15 chr2 213468421 213468574 + 3 NA intron (NR_047660, intron 8 of 14) (AT)n|Simple_repeat|Simple_repeat 184033 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 288-19 chr2 99864024 99864148 + 3 NA intron (NM_001025108, intron 6 of 23) MamRTE1|LINE|RTE-BovB 241497 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 508.5-23 chr7 54142120 54142453 + 3 NA Intergenic Intergenic -188411 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 565-13 chr5 116357568 116357830 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 16871 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 800-4 chr1 233216492 233216848 + 3 NA intron (NM_014801, intron 12 of 33) L1MA7|LINE|L1 79055 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 765-5 chr21 22777027 22777489 + 3 NA Intergenic Intergenic -302026 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 379-9 chr10 25246432 25246643 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -70261 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 439-15 chr5 6036563 6036885 + 3 NA Intergenic Intergenic 300568 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 468-34 chr5 81226373 81226630 + 3 NA 3' UTR (NM_006909, exon 27 of 27) 3' UTR (NM_006909, exon 27 of 27) -6819 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 474-29 chr6 39497128 39497368 + 3 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -65858 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 658.5 chr10 17143893 17144308 + 3 NA 3' UTR (NM_001321007, exon 12 of 12) 3' UTR (NM_001321007, exon 12 of 12) -14283 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 448.5-5 chr12 24314516 24314748 + 3 NA intron (NM_152989, intron 3 of 17) L2|LINE|L2 91361 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 307.5-13 chr15 100461502 100461646 + 3 NA intron (NM_001290341, intron 12 of 13) MIR|SINE|MIR 82712 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 400.5-5 chr10 107605716 107605968 + 3 NA Intergenic L1MA8|LINE|L1 -441136 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 581.5-15 chr3 46539283 46539506 + 3 NA intron (NM_024512, intron 3 of 8) intron (NM_024512, intron 3 of 8) -18004 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 444.5-6 chr2 55571975 55572144 + 3 NA intron (NM_020463, intron 10 of 14) L1M5|LINE|L1 45563 NM_001282850 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 645 chr1 168332289 168332598 + 3 NA Intergenic Intergenic -43081 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 667.5-2 chr16 61545196 61545565 + 3 NA Intergenic L1M2|LINE|L1 -489614 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 619.5-5 chr2 78673272 78673661 + 3 NA Intergenic MER61-int|LTR|ERV1 127935 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 495-20 chr8 104430972 104431283 + 3 NA intron (NM_001385, intron 4 of 9) intron (NM_001385, intron 4 of 9) 35928 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 430-12 chr14_GL000225v1_random 92705 93025 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 571.5-3 chr16 60883429 60883759 + 3 NA Intergenic Intergenic 172172 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 713-8 chr8 100009760 100010028 + 3 NA intron (NM_015668, intron 14 of 27) L2c|LINE|L2 5312 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 295.5-20 chr4 101873608 101873763 + 3 NA intron (NM_017935, intron 5 of 16) intron (NM_017935, intron 5 of 16) 59843 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 563-6 chr18 4190641 4190941 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -73811 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 609-19 chr6 163253340 163253687 + 3 NA intron (NM_001080379, intron 4 of 4) MIR3|SINE|MIR -61511 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 503-16 chr2 185625277 185625471 + 3 NA Intergenic Intergenic 113345 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 407-14 chr14 20543213 20543393 + 3 NA Intergenic L1MA8|LINE|L1 17628 NM_001001673 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 208.5-31 chr8 105689829 105689960 + 3 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 370351 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 569-18 chr6 51273438 51273864 + 3 NA Intergenic Intergenic -348219 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 682-4 chr12 3371014 3371352 + 3 NA intron (NR_146865, intron 2 of 2) intron (NR_146865, intron 2 of 2) 3075 NR_146865 101930162 Hs.351489 NR_146865 LINC02417 - long intergenic non-protein coding RNA 2417 ncRNA 446-3 chr1 170893371 170893666 + 3 NA Intergenic Intergenic -41953 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 426.5-15 chr2 144323926 144324168 + 3 NA intron (NM_001354351, intron 1 of 15) intron (NM_001354351, intron 1 of 15) 8224 NM_001354355 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 366-10 chr2 13946007 13946141 + 3 NA Intergenic Intergenic 454884 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 630-15 chr5 1253895 1254274 + 3 NA intron (NM_198253, intron 15 of 15) intron (NM_198253, intron 15 of 15) 28703 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 614-5 chr13 105626507 105626770 + 3 NA Intergenic Intergenic -80192 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 432-3 chr11 131717961 131718173 + 3 NA intron (NM_001352006, intron 2 of 9) L1ME1|LINE|L1 -54511 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 505.5-12 chr2 71799235 71799445 + 3 NA Intergenic Intergenic 332641 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1046 chr17 40086322 40086783 + 3 NA intron (NM_001190919, intron 6 of 9) intron (NM_001190919, intron 6 of 9) 14037 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 514.5-20 chr5 155964365 155964623 + 3 NA Intergenic AluSx1|SINE|Alu -362263 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 576-2 chr13 19893504 19893852 + 3 NA Intergenic AluSx1|SINE|Alu -30029 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 526 chr10 96011824 96012211 + 3 NA intron (NM_001159747, intron 4 of 11) intron (NM_001159747, intron 4 of 11) 11926 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 355.5-15 chr4 96960111 96960281 + 3 NA Intergenic Intergenic -406730 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 550-14 chr2 52322914 52323243 + 3 NA intron (NR_135237, intron 8 of 10) MLT1D|LTR|ERVL-MaLR -47570 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 275-26 chr3 118776431 118776597 + 3 NA intron (NR_135547, intron 1 of 3) L1PA17|LINE|L1 34319 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 517.5-9 chr2 2256319 2256612 + 3 NA intron (NM_015025, intron 2 of 24) MER58A|DNA|hAT-Charlie -62767 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 532.5-10 chr22 30314082 30314417 + 3 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) 12692 NM_031937 83874 Hs.655273 NM_031937 ENSG00000099992 TBC1D10A EPI64|TBC1D10|dJ130H16.1|dJ130H16.2 TBC1 domain family member 10A protein-coding 875.5-2 chr7 22371117 22371462 + 3 NA Intergenic Intergenic -14135 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 684-4 chr15 57095747 57096177 + 3 NA intron (NM_207038, intron 5 of 19) MIRc|SINE|MIR -123468 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 786-3 chr14 39678354 39678779 + 3 NA Intergenic Intergenic -246066 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 396-28 chr6 119563388 119563680 + 3 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 13726 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 726-8 chr9 38366181 38366527 + 3 NA Intergenic L1M5|LINE|L1 -26348 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 417.5 chr1 93152417 93152666 + 3 NA non-coding (NR_030761, exon 5 of 5) non-coding (NR_030761, exon 5 of 5) 27872 NM_001167830 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 367.5-35 chr7 42773777 42773982 + 3 NA Intergenic L2c|LINE|L2 -67432 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 372-27 chr20 58341777 58341990 + 3 NA intron (NM_020673, intron 2 of 6) intron (NM_020673, intron 2 of 6) 32168 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 396.5-7 chr10 43708051 43708221 + 3 NA Intergenic Intergenic -59255 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 507-30 chr6 47756338 47756565 + 3 NA Intergenic Intergenic -25588 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 945.5 chr17 71224012 71224482 + 3 NA Intergenic Intergenic -22068 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 640-8 chr5 26263683 26263988 + 3 NA Intergenic L1PA16|LINE|L1 774751 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 370.5-9 chr15 43392158 43392428 + 3 NA intron (NM_014444, intron 9 of 17) L1M5|LINE|L1 21192 NM_014444 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 338.5-3 chr1 159113196 159113379 + 3 NA Intergenic Intergenic -36386 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 525-23 chr6 129241563 129241791 + 3 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 358536 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 601.5-6 chr19 5889591 5889963 + 3 NA Intergenic L2a|LINE|L2 14013 NM_175614 126328 Hs.406062 NM_175614 ENSG00000174886 NDUFA11 B14.7|CI-B14.7|MC1DN14 NADH:ubiquinone oxidoreductase subunit A11 protein-coding 488-16 chr5 51312442 51312718 + 3 NA Intergenic Intergenic 70752 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 576-20 chr8 137303127 137303444 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR 110303 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 570-10 chr13 64655945 64656250 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -580086 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 293-5 chr12 264366 264538 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -1579 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 398.5-17 chr4 153694899 153695107 + 3 NA intron (NM_003264, intron 2 of 2) L1MA3|LINE|L1 10723 NM_001318791 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 207-26 chr6 162916381 162916518 + 3 NA intron (NM_001080379, intron 2 of 4) L1ME2|LINE|L1 137712 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 387-25 chr4 61132018 61132240 + 3 NA Intergenic Intergenic -11527 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 433-7 chr12 73306680 73306915 + 3 NA Intergenic Intergenic 147607 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 296-8 chr12 26040716 26040876 + 3 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -11768 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 345-17 chr19 34308289 34308407 + 3 NA intron (NM_014686, intron 2 of 13) intron (NM_014686, intron 2 of 13) 53794 NM_014686 9710 Hs.330073 NM_014686 ENSG00000166398 KIAA0355 - KIAA0355 protein-coding 457.5-16 chr2 160048249 160048505 + 3 NA intron (NM_001007267, intron 1 of 26) intron (NM_001007267, intron 1 of 26) 14238 NM_001007267 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 488.5-12 chr7 40530241 40530428 + 3 NA intron (NM_001193312, intron 11 of 12) MamGypsy2-LTR|LTR|Gypsy 395358 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 483-10 chr14 72844553 72844864 + 3 NA intron (NM_001280542, intron 1 of 10) MamRep4096|DNA|hAT-Tip100 47941 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 698 chr1 96013954 96014285 + 3 NA intron (NR_125991, intron 4 of 4) intron (NR_125991, intron 4 of 4) 22051 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 545.5-5 chr17 64287092 64287289 + 3 NA Intergenic AluSq10|SINE|Alu -23930 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 901.5 chr2 50847269 50847757 + 3 NA intron (NM_001330093, intron 4 of 22) LTR1A2|LTR|ERV1 -151251 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 400.5-12 chr2 197100600 197100827 + 3 NA intron (NM_153697, intron 9 of 9) intron (NM_153697, intron 9 of 9) -97278 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 441-21 chr2 194598282 194598544 + 3 NA Intergenic Intergenic -132182 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 482.5-2 chr12 3116683 3116916 + 3 NA intron (NM_006675, intron 2 of 8) L3|LINE|CR1 39420 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 381-6 chr13 75944591 75944777 + 3 NA Intergenic Intergenic -9552 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 649.5-4 chr14 27261604 27262123 + 3 NA Intergenic L1MB7|LINE|L1 -350725 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 601.5-11 chr4 41897630 41897894 + 3 NA Intergenic Intergenic -15151 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 516-20 chr22 20723442 20723676 + 3 NA intron (NM_058004, intron 42 of 54) AluSx|SINE|Alu 22445 NR_026815 84222 Hs.546454 NM_032262 ENSG00000226287 TMEM191A TMEM191AP transmembrane protein 191A (pseudogene) pseudo 679.5-7 chr5 16988022 16988390 + 3 NA Intergenic Intergenic -51918 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 441-31 chr5 125189890 125190057 + 3 NA intron (NR_109882, intron 4 of 5) Charlie24|DNA|hAT-Charlie 153142 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 345.5-14 chr18 2525389 2525639 + 3 NA Intergenic Intergenic 45991 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 632-10 chr4 24008508 24008718 + 3 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -118566 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 480-34 chr9 100877859 100878043 + 3 NA Intergenic Intergenic -150776 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 395-7 chr15 58853170 58853333 + 3 NA intron (NM_001040453, intron 8 of 8) AluSz|SINE|Alu 80428 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 483-28 chr6 44143321 44143538 + 3 NA intron (NM_001318792, intron 10 of 23) intron (NM_001318792, intron 10 of 23) -15391 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 710-7 chr17 64381299 64381760 + 3 NA intron (NM_000442, intron 2 of 15) intron (NM_000442, intron 2 of 15) 9331 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 650-10 chr5 1786585 1786877 + 3 NA Intergenic Intergenic 13106 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 622.5 chr1 108101175 108101520 + 3 NA Intergenic Intergenic 91488 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 495-4 chr14 66681957 66682194 + 3 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 174668 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 748-9 chr4 120793613 120794043 + 3 NA intron (NM_001300824, intron 9 of 13) L1MA9|LINE|L1 129038 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 378 chr1 41566881 41567042 + 3 NA intron (NM_024503, intron 5 of 8) L2|LINE|L2 -82278 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 467-6 chr11 18736031 18736340 + 3 NA intron (NM_001278236, intron 9 of 14) AluJr4|SINE|Alu -9997 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 394.5-3 chr1 58338399 58338628 + 3 NA Intergenic Intergenic -87966 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 429-20 chr21 15312310 15312459 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -247384 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 575.5-2 chr16 13659634 13659925 + 3 NA Intergenic Intergenic -260378 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 394-14 chr2 63043561 63043841 + 3 NA TTS (NR_027069) TTS (NR_027069) 4010 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 1026-2 chr4 43941091 43941676 + 3 NA Intergenic Intergenic -75478 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 443.5-2 chr1 245099767 245100003 + 3 NA intron (NM_001143943, intron 6 of 6) L1MC5|LINE|L1 -55100 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 309.5-15 chr2 86255495 86255664 + 3 NA intron (NM_001371279, intron 3 of 8) L2b|LINE|L2 56122 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 472.5-22 chr9 104798805 104799020 + 3 NA intron (NM_005502, intron 36 of 49) intron (NM_005502, intron 36 of 49) 34783 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 242.5 chr1 4359568 4359648 + 3 NA Intergenic Intergenic -52443 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 610.5-11 chr4 19839858 19840257 + 3 NA Intergenic Intergenic -411848 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 453-23 chr3 183541251 183541544 + 3 NA intron (NM_130446, intron 1 of 6) intron (NM_130446, intron 1 of 6) -7338 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 983-2 chr4 61221379 61221991 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 19513 NM_001371342 519-13 chr20 16157256 16157457 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -171474 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 767.5-5 chr5 115562928 115563436 + 3 NA Intergenic Intergenic -18407 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 454-18 chr22_KI270736v1_random 170833 171043 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 586.5-13 chr6 144743301 144743683 + 3 NA intron (NM_007124, intron 53 of 73) intron (NM_007124, intron 53 of 73) 337837 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 579-15 chr22 34320785 34321049 + 3 NA Intergenic Intergenic -398029 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 489-38 chr9 138099895 138100095 + 3 NA intron (NM_001243812, intron 36 of 45) intron (NM_001243812, intron 36 of 45) -50118 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 861.5-4 chr9 27505459 27505820 + 3 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -18675 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 316.5-30 chr9 37338182 37338349 + 3 NA intron (NR_110317, intron 5 of 7) intron (NR_110317, intron 5 of 7) -84431 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 727.5-4 chr21 23163317 23163734 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 84241 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 333-10 chr16 79819309 79819504 + 3 NA Intergenic L3b|LINE|CR1 24157 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 537-3 chr11 36402260 36402583 + 3 NA intron (NM_001160167, intron 2 of 8) AluSz|SINE|Alu 1424 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 526.5-19 chr7 51440467 51440692 + 3 NA Intergenic L1MB8|LINE|L1 -47323 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 865-3 chr4 55673886 55674349 + 3 NA Intergenic L1M1|LINE|L1 -37324 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 406-14 chr2 182783372 182783537 + 3 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 67197 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 463.5-19 chr5 43079562 43079808 + 3 NA intron (NR_102752, intron 2 of 2) AluSq2|SINE|Alu -12246 NR_104651 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 261-17 chr4 72751663 72751805 + 3 NA Intergenic L1PA13|LINE|L1 -182513 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 704.5-5 chr18 916302 916672 + 3 NA Intergenic Intergenic 11121 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 584-12 chr22 26814295 26814584 + 3 NA Intergenic Intergenic -45772 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 398-21 chr22 25505342 25505595 + 3 NA Intergenic AluSx1|SINE|Alu 49822 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 1025-2 chr14 61516237 61516630 + 3 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 53761 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 270-24 chr5 29750692 29750858 + 3 NA Intergenic Intergenic -129785 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 564-21 chr5 59245824 59246181 + 3 NA intron (NM_001165899, intron 3 of 16) (AT)n|Simple_repeat|Simple_repeat 30113 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 466-21 chr3 94854825 94855114 + 3 NA Intergenic L1M4|LINE|L1 -83294 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 350-20 chr20 46927886 46928129 + 3 NA intron (NM_172110, intron 1 of 13) MIR|SINE|MIR 33164 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 396-21 chr4 54859882 54860157 + 3 NA Intergenic L2b|LINE|L2 202091 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 478.5-5 chr15 58916541 58916856 + 3 NA intron (NM_024755, intron 3 of 20) intron (NM_024755, intron 3 of 20) 16981 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 929-3 chr16 6634167 6634753 + 3 NA intron (NM_018723, intron 2 of 15) (AT)n|Simple_repeat|Simple_repeat -139349 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 890-2 chr15 48317161 48317597 + 3 NA Intergenic L2b|LINE|L2 -13716 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 229.5-11 chr16 63915087 63915199 + 3 NA Intergenic Intergenic 1206920 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 339-28 chr5 21401814 21402011 + 3 NA Intergenic Intergenic -57568 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 468-5 chr11 79162123 79162373 + 3 NA intron (NM_001098816, intron 3 of 33) MIR|SINE|MIR 239861 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 722 chr13 34953162 34953465 + 3 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 11026 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 647-10 chr2 76287334 76287712 + 3 NA Intergenic LTR78B|LTR|ERV1 -576608 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 467-2 chr1 99690424 99690708 + 3 NA intron (NM_017734, intron 7 of 7) intron (NM_017734, intron 7 of 7) 22387 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 626-9 chr2 30031584 30031944 + 3 NA Intergenic L1ME3A|LINE|L1 -110178 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 493.5-21 chr8 125244119 125244332 + 3 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 152365 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 638-5 chr16 5444221 5444457 + 3 NA Intergenic Intergenic 171911 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 644-7 chr5 120719369 120719601 + 3 NA Intergenic Intergenic 188021 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 568.5-6 chr20 9958283 9958530 + 3 NA Intergenic HAL1|LINE|L1 -27927 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 457-32 chr8 123256412 123256601 + 3 NA intron (NM_001017926, intron 2 of 3) Tigger15a|DNA|TcMar-Tigger -15129 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 283-38 chr5 50274644 50274827 + 3 NA Intergenic Intergenic 166553 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 373-35 chr5 145714904 145715069 + 3 NA Intergenic L2a|LINE|L2 120356 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 421-4 chr10 24075950 24076219 + 3 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -132707 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 539-3 chr1 94463735 94464272 + 3 NA intron (NM_002858, intron 2 of 22) L2b|LINE|L2 45614 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 1030-2 chr8 47635823 47636256 + 3 NA intron (NM_001080394, intron 10 of 19) Tigger1|DNA|TcMar-Tigger -18049 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 581-13 chr4 70565822 70566226 + 3 NA Intergenic L1PA14|LINE|L1 -26232 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 562.5-17 chr22 33636341 33636861 + 3 NA intron (NM_133642, intron 3 of 14) AluJo|SINE|Alu 68319 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 416.5-13 chr18 1801556 1801784 + 3 NA Intergenic Intergenic -442041 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 519.5-8 chr2 217222303 217222603 + 3 NA Intergenic MIR3|SINE|MIR -60280 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 625.5-12 chr8 129367782 129368143 + 3 NA intron (NR_130920, intron 3 of 3) intron (NR_130920, intron 3 of 3) 116180 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 540-11 chr14 73468988 73469294 + 3 NA Intergenic Intergenic -5499 NR_135251 101928143 Hs.654609 NR_135251 ENSG00000284930 LOC101928143 - uncharacterized LOC101928143 ncRNA 408-9 chr11 91451975 91452211 + 3 NA Intergenic Intergenic -582891 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 635.5-4 chr12 28943175 28943729 + 3 NA Intergenic L1M5|LINE|L1 -205826 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 489-35 chr8 135508293 135508545 + 3 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 50963 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 637.5 chr11 47593153 47593488 + 3 NA intron (NM_031909, intron 1 of 1) intron (NM_031909, intron 1 of 1) 1091 NM_031909 114900 Hs.662633 NM_031909 ENSG00000172247 C1QTNF4 CTRP4|ZACRP4 C1q and TNF related 4 protein-coding 658-15 chr9 116060757 116061238 + 3 NA Intergenic L2a|LINE|L2 -92794 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 309.5-25 chr8 112653398 112653622 + 3 NA intron (NM_001363185, intron 16 of 66) intron (NM_001363185, intron 16 of 66) 10017 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 366.5-5 chr12 30702221 30702356 + 3 NA Intergenic Intergenic -6419 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 430.5-16 chr2 79783794 79784092 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 82640 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 420-10 chr15 74123476 74123658 + 3 NA Intergenic MIR3|SINE|MIR 5711 NR_027073 283731 Hs.631696 NR_027073 ENSG00000248540 LOC283731 - uncharacterized LOC283731 ncRNA 688-4 chr3 159125504 159125894 + 3 NA intron (NM_001197113, intron 1 of 10) MIR|SINE|MIR 56380 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 603-12 chr8 140688166 140688494 + 3 NA intron (NR_148037, intron 28 of 34) intron (NR_148037, intron 28 of 34) 30239 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 341.5-25 chr3 182009902 182010194 + 3 NA non-coding (NR_104146, exon 8 of 8) non-coding (NR_104146, exon 8 of 8) 57684 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 572.5-7 chr7 2523611 2523959 + 3 NA intron (NM_001040168, intron 1 of 7) G-rich|Low_complexity|Low_complexity -3289 NR_039791 100616116 NR_039791 ENSG00000264357 MIR4648 - microRNA 4648 ncRNA 525-27 chr8 141716459 141716733 + 3 NA Intergenic Intergenic 69717 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 513-11 chr15 79326958 79327289 + 3 NA intron (NM_001330376, intron 2 of 2) MSTB1|LTR|ERVL-MaLR 16011 NM_001301203 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 699.5 chr1 76469537 76469779 + 3 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 309609 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 569-13 chr3 99634611 99634907 + 3 NA Intergenic Intergenic -3835 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 406-16 chr3 144328483 144328634 + 3 NA Intergenic L1MA2|LINE|L1 355477 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 653.5-10 chr4 44889684 44889988 + 3 NA Intergenic L1MA2|LINE|L1 -163202 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 641-14 chr8 85279680 85280144 + 3 NA intron (NM_198584, intron 6 of 6) intron (NM_198584, intron 6 of 6) 34454 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 414-42 chr8 27638397 27638671 + 3 NA intron (NM_182826, intron 1 of 5) intron (NM_182826, intron 1 of 5) 4474 NM_182826 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 470-7 chr11 113799281 113799472 + 3 NA exon (NM_001346261, exon 23 of 23) exon (NM_001346261, exon 23 of 23) 19580 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 223-29 chr8 135631983 135632084 + 3 NA intron (NM_006558, intron 7 of 8) Tigger3b|DNA|TcMar-Tigger 174577 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 327-12 chr13 62215276 62215478 + 3 NA intron (NR_125787, intron 1 of 3) intron (NR_125787, intron 1 of 3) 3095 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 395.5-11 chr15 63366073 63366409 + 3 NA intron (NR_135511, intron 2 of 9) L2b|LINE|L2 15605 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 366-6 chr14 53258144 53258272 + 3 NA Intergenic MER4-int|LTR|ERV1 104854 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1043 chr10 15233688 15234393 + 3 NA intron (NM_001010924, intron 5 of 7) MIRb|SINE|MIR -65347 NM_004808 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 418.5-31 chr8 108859933 108860145 + 3 NA Intergenic Intergenic -72445 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 395-16 chr2 108076786 108077031 + 3 NA Intergenic Intergenic -24153 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 701-6 chr4 88390373 88390628 + 3 NA intron (NM_001165136, intron 3 of 21) L1MA9|LINE|L1 11761 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 588-12 chr13 60076632 60076888 + 3 NA intron (NM_001258367, intron 2 of 25) intron (NM_001258367, intron 2 of 25) 63457 NR_051993 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 678-3 chr14 31990847 31991125 + 3 NA Intergenic Intergenic 46133 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 744-11 chr8 67999855 68000220 + 3 NA intron (NM_024870, intron 1 of 39) L1PREC2|LINE|L1 47991 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 568-6 chr16 84084586 84084814 + 3 NA intron (NM_003791, intron 10 of 22) intron (NM_003791, intron 10 of 22) 32242 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 543-6 chr17 20937632 20937887 + 3 NA promoter-TSS (NR_160715) promoter-TSS (NR_160715) -807 NR_160717 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 330-19 chr17 63279634 63279752 + 3 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 160574 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 508.5-9 chr2 88526535 88526759 + 3 NA intron (NM_152670, intron 3 of 3) (TGTGCA)n|Simple_repeat|Simple_repeat 1998 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 236.5-31 chr5 41167446 41167534 + 3 NA intron (NM_000065, intron 9 of 17) MamGypLTR2c|LTR|Gypsy 46042 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 368-38 chr6 61995101 61995256 + 3 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 291047 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 474-31 chr6 96448281 96448529 + 3 NA Intergenic Intergenic -73401 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 519-15 chr5 167486183 167486460 + 3 NA intron (NM_001122679, intron 3 of 29) AluY|SINE|Alu -87338 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 487-2 chr1 34546593 34546818 + 3 NA Intergenic Intergenic 122989 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 533-5 chr10 87908811 87909077 + 3 NA intron (NM_001304718, intron 2 of 8) L1MB3|LINE|L1 45319 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 429 chr1 57378187 57378445 + 3 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 44796 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 583.5-8 chr2 63973599 63973812 + 3 NA intron (NM_001005739, intron 3 of 22) AluJr4|SINE|Alu 45723 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 339-40 chr8 109150050 109150233 + 3 NA Intergenic L2b|LINE|L2 63513 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 320 chr1 172228995 172229162 + 3 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -84243 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 619.5-10 chr5 61598869 61599353 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -38649 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 691-9 chr7 33638614 33639040 + 3 NA Intergenic Intergenic -266088 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 403.5-6 chr14 90360714 90360979 + 3 NA Intergenic AluSx1|SINE|Alu -28905 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 1026.5 chr1 18072528 18073472 + 3 NA non-coding (NR_125946, exon 3 of 3) non-coding (NR_125946, exon 3 of 3) 7343 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 568-20 chr9 128357531 128357781 + 3 NA intron (NM_005094, intron 12 of 12) intron (NM_005094, intron 12 of 12) 5609 NR_031672 100302233 NR_031672 ENSG00000221641 MIR1268A MIR1268|MIRN1268|hsa-mir-1268|hsa-mir-1268a microRNA 1268a ncRNA 415-12 chr12 115214767 115214996 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -530706 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 769.5 chr1 69031619 69032038 + 3 NA Intergenic L1MA4A|LINE|L1 -24070 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 338-24 chr3 117898354 117898521 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -207512 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 399-4 chr10 10819114 10819358 + 3 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 20511 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 522-9 chr12 23542493 23542729 + 3 NA intron (NM_152989, intron 16 of 17) intron (NM_152989, intron 16 of 17) 41975 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 838-10 chr9 16264459 16265006 + 3 NA intron (NM_001364979, intron 1 of 3) intron (NM_001364979, intron 1 of 3) 11581 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 411.5-12 chr14 98952808 98953185 + 3 NA Intergenic Intergenic 241383 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 468-41 chr6 79720746 79721047 + 3 NA Intergenic Intergenic 89567 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 847.5-4 chr12 30791379 30791877 + 3 NA Intergenic LTR39|LTR|ERV1 -4053 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 567-17 chr6 34963546 34963809 + 3 NA intron (NM_015245, intron 1 of 23) L1MA8|LINE|L1 74422 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 556.5-17 chr6 42731268 42731535 + 3 NA Intergenic AluSx1|SINE|Alu 3825 NR_037141 442211 Hs.563394 NR_037141 ATP6V0CP3 - ATPase H+ transporting V0 subunit c pseudogene 3 pseudo 321.5-4 chr1 118272760 118272885 + 3 NA Intergenic Intergenic -87594 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 623-10 chr9 20386128 20386563 + 3 NA intron (NM_001286691, intron 5 of 10) intron (NM_001286691, intron 5 of 10) 24893 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 431-10 chr15 49493916 49494097 + 3 NA intron (NM_001330293, intron 10 of 10) intron (NM_001330293, intron 10 of 10) 70764 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 1005.5-5 chr4 70192474 70192966 + 3 NA Intergenic L2b|LINE|L2 -3807 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 466-34 chr9 113447937 113448113 + 3 NA intron (NM_144488, intron 1 of 25) AluJb|SINE|Alu 3295 NM_144488 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 535-3 chr1 182829241 182829477 + 3 NA 3' UTR (NM_030769, exon 13 of 13) 3' UTR (NM_030769, exon 13 of 13) -9988 NR_033302 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 750-11 chr3 3259287 3259692 + 3 NA Intergenic Intergenic -79772 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 532.5-18 chr7 14210661 14210927 + 3 NA intron (NM_001350717, intron 22 of 24) L2|LINE|L2 -219369 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 319-33 chr5 57930952 57931181 + 3 NA Intergenic Intergenic -31904 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 397-15 chr17 67975035 67975236 + 3 NA intron (NM_182641, intron 26 of 27) MER21B|LTR|ERVL 18471 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 595-10 chr22 20747836 20748166 + 3 NA intron (NM_058004, intron 28 of 54) AluJb|SINE|Alu -26112 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 668-7 chr2 1130235 1130540 + 3 NA intron (NM_018968, intron 4 of 16) intron (NM_018968, intron 4 of 16) -178995 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 525-11 chr2 55599399 55599658 + 3 NA intron (NM_020463, intron 3 of 14) MLT1J2|LTR|ERVL-MaLR 18094 NM_001282850 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 483-33 chr7 33791911 33792084 + 3 NA Intergenic L2c|LINE|L2 -112918 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 459-4 chr10 132839318 132839530 + 3 NA intron (NM_001200049, intron 44 of 57) intron (NM_001200049, intron 44 of 57) -53277 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 368-20 chr2 133434636 133434783 + 3 NA intron (NM_207481, intron 3 of 17) L2b|LINE|L2 133754 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 355-40 chr7 77728748 77728966 + 3 NA intron (NM_198467, intron 1 of 7) L1M3f|LINE|L1 -31512 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 400.5-16 chr4 32251065 32251220 + 3 NA Intergenic Intergenic -99896 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 658.5-3 chr13 31865774 31866126 + 3 NA intron (NR_027062, intron 1 of 3) intron (NR_027062, intron 1 of 3) 19167 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 597-19 chr5 100819959 100820430 + 3 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -3629 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 649-2 chr1 114090874 114091124 + 3 NA 3' UTR (NM_205848, exon 8 of 8) 3' UTR (NM_205848, exon 8 of 8) 61441 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 375.5-21 chr4 93128344 93128601 + 3 NA intron (NM_001286838, intron 3 of 14) Charlie13a|DNA|hAT-Charlie -700281 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 726-7 chr8 49059487 49059919 + 3 NA intron (NM_001256596, intron 1 of 4) intron (NM_001256596, intron 1 of 4) 5367 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 219-25 chr3 160543179 160543269 + 3 NA intron (NM_002268, intron 1 of 16) MIR3|SINE|MIR 22347 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 484.5-18 chr4 179825159 179825344 + 3 NA Intergenic Intergenic 1333898 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 695-3 chr11 27938421 27938956 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -118127 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 495-6 chr15 63241861 63242212 + 3 NA intron (NM_016530, intron 1 of 7) MADE1|DNA|TcMar-Mariner -35514 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 403.5-14 chr4 37344455 37344669 + 3 NA intron (NM_001144990, intron 2 of 6) intron (NM_001144990, intron 2 of 6) 99819 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 399-11 chr12 91941752 91941908 + 3 NA Intergenic Intergenic 199883 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 598-12 chr8 11290246 11290459 + 3 NA intron (NM_015458, intron 1 of 9).2 L1ME5|LINE|L1 5536 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 739.5-4 chr6 44806303 44806762 + 3 NA Intergenic Intergenic -254651 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 502.5-9 chr4 2574734 2574998 + 3 NA intron (NM_001366318, intron 1 of 20) intron (NM_001366318, intron 1 of 20) 38219 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 516-5 chr11 84405195 84405399 + 3 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -87958 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 657-5 chr2 38253681 38254058 + 3 NA Intergenic L1M7|LINE|L1 122661 NM_001330459 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 371-29 chr7 104810646 104810853 + 3 NA intron (NM_199000, intron 2 of 2) L2c|LINE|L2 -6657 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 565.5-8 chr21 22563654 22564001 + 3 NA Intergenic Intergenic 465210 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 445-32 chr8 27225798 27226017 + 3 NA Intergenic Intergenic 32497 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 382-28 chr20 47019303 47019452 + 3 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) 124534 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 504-18 chr4 56482555 56482829 + 3 NA intron (NR_151856, intron 8 of 19) intron (NR_151856, intron 8 of 19) 15075 NR_151856 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 587-9 chr2 207075015 207075555 + 3 NA non-coding (NR_073108, exon 5 of 5) non-coding (NR_073108, exon 5 of 5) 34788 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 306-16 chr21 20060200 20060322 + 3 NA Intergenic L1MB8|LINE|L1 -160506 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 405-29 chr5 99974357 99974521 + 3 NA Intergenic Intergenic 413815 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 593-9 chr2 228195216 228195440 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -13641 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 386-19 chr2 106671129 106671294 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 183847 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 384-20 chr22 38030374 38030547 + 3 NA intron (NM_001301130, intron 5 of 5) MER63A|DNA|hAT-Blackjack -26795 NM_001039584 9463 Hs.180871 NM_012407 ENSG00000100151 PICK1 PICK|PRKCABP protein interacting with PRKCA 1 protein-coding 368-40 chr7 26676564 26676816 + 3 NA intron (NM_003930, intron 11 of 12) L2c|LINE|L2 38819 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 269-33 chr8 48931616 48931783 + 3 NA Intergenic Intergenic -10270 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 284-3 chr1 195510771 195510950 + 3 NA Intergenic Intergenic 577855 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 498 chr1 7901098 7901347 + 3 NA Intergenic L2|LINE|L2 41943 NM_001561 3604 Hs.86447 NM_001561 ENSG00000049249 TNFRSF9 4-1BB|CD137|CDw137|ILA TNF receptor superfamily member 9 protein-coding 434-2 chr1 195513451 195513673 + 3 NA Intergenic Intergenic 575153 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 681-7 chr6 49430320 49430593 + 3 NA TTS (NM_000255) TTS (NM_000255) 32797 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 207-28 chrX 127734660 127734751 + 3 NA Intergenic L1MC1|LINE|L1 317698 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 962-5 chr4 54238535 54239160 + 3 NA intron (NM_001347830, intron 1 of 22) AluJb|SINE|Alu 4887 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 222-13 chr2 30618081 30618185 + 3 NA intron (NM_182551, intron 6 of 6) L1ME1|LINE|L1 170887 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 244.5-2 chr1 61499634 61499807 + 3 NA Intergenic Intergenic -154522 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 579 chr1 227140346 227140671 + 3 NA intron (NM_001366019, intron 9 of 36) L2a|LINE|L2 177984 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 727 chr1 51362928 51363388 + 3 NA intron (NM_001159969, intron 11 of 12) AluSz|SINE|Alu -18042 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 396-11 chr14 72307715 72307934 + 3 NA intron (NM_001370288, intron 2 of 16) L1M5|LINE|L1 -208996 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 582-14 chr20 46182716 46182981 + 3 NA intron (NM_021248, intron 10 of 11) intron (NM_021248, intron 10 of 11) 64534 NM_001322422 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 263-10 chr14 57601030 57601156 + 3 NA intron (NM_001306087, intron 1 of 7) intron (NM_001306087, intron 1 of 7) -107236 NM_001283060 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 612.5-12 chr8 124899582 124899903 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -42266 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 507-6 chr10 101110701 101110944 + 3 NA intron (NR_130723, intron 2 of 2) intron (NR_130723, intron 2 of 2) 20324 NR_130722 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 898-4 chr8 130574690 130575509 + 3 NA Intergenic Intergenic -131425 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 417-24 chr2 181915622 181915766 + 3 NA exon (NM_001130445, exon 11 of 18) exon (NM_001130445, exon 11 of 18) 23964 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 351-28 chr22 37171596 37171766 + 3 NA intron (NM_001346222, intron 1 of 9) intron (NM_001346222, intron 1 of 9) 3375 NM_001346223 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 543.5-12 chr3 177575215 177575610 + 3 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 133491 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 316-28 chr3 186368710 186368883 + 3 NA Intergenic Intergenic -6562 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 337.5-4 chr12 82933274 82933455 + 3 NA intron (NM_152588, intron 4 of 11) intron (NM_152588, intron 4 of 11) 246209 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 504-25 chr8 52946062 52946337 + 3 NA Intergenic Intergenic 6291 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 516-31 chrX 39574097 39574356 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -86990 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 462.5-24 chr8 100780794 100781215 + 3 NA Intergenic MER117|DNA|hAT-Charlie -58916 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 458-2 chr1 239461204 239461459 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 74763 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 286.5-36 chrX 79458042 79458153 + 3 NA Intergenic MER4-int|LTR|ERV1 -90545 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 809.5-3 chr5 13044310 13044656 + 3 NA Intergenic MLT2B1|LTR|ERVL -11597 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 230-15 chr18 71752026 71752127 + 3 NA intron (NR_126324, intron 1 of 4) L1MCb|LINE|L1 30150 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 832-6 chr3 53762876 53763213 + 3 NA intron (NM_001128839, intron 30 of 45) MIRc|SINE|MIR 83375 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 630-4 chr10 21512750 21513127 + 3 NA TTS (NM_207371) TTS (NM_207371) 12744 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 347-26 chr8 117343798 117343984 + 3 NA Intergenic L1MA9|LINE|L1 -176822 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 199.5-28 chr3 150343874 150343957 + 3 NA Intergenic Intergenic -20168 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 529-21 chr7 116884134 116884332 + 3 NA intron (NM_006136, intron 1 of 9) intron (NM_006136, intron 1 of 9) 21646 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 677-5 chr16 73947825 73948107 + 3 NA Intergenic Charlie18a|DNA|hAT-Charlie 267555 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 859-3 chr2 143246023 143246375 + 3 NA intron (NM_018460, intron 5 of 13) MIRb|SINE|MIR 116780 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 1056-3 chr8 88803328 88803834 + 3 NA Intergenic Intergenic -476098 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 367-35 chr8 107667042 107667275 + 3 NA Intergenic Intergenic -169240 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 500-4 chr12 98888850 98889089 + 3 NA intron (NM_152788, intron 17 of 25) L2a|LINE|L2 5805 NM_001204065 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 360-5 chr1 173062640 173062912 + 3 NA Intergenic L2c|LINE|L2 -11813 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 561-15 chr3 8044028 8044273 + 3 NA Intergenic L1PB1|LINE|L1 -27843 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 511-25 chr6 55774024 55774310 + 3 NA exon (NM_021073, exon 4 of 7) exon (NM_021073, exon 4 of 7) 101423 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 305-12 chr12 43838585 43838743 + 3 NA intron (NM_001286213, intron 1 of 6) intron (NM_001286213, intron 1 of 6) 2583 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 489-20 chr4 88288251 88288504 + 3 NA intron (NR_134237, intron 1 of 3) intron (NR_134237, intron 1 of 3) 3447 NR_134237 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 523-12 chr15 39083249 39083484 + 3 NA Intergenic Intergenic -167303 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 413-35 chr5 77103587 77103992 + 3 NA intron (NR_024398, intron 2 of 3) MIR|SINE|MIR -16504 NM_032367 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 406-22 chr7 24992013 24992486 + 3 NA Intergenic Intergenic -12071 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 359-33 chr4 89211010 89211165 + 3 NA Intergenic Intergenic 96713 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 447-13 chr19 2922132 2922295 + 3 NA Intergenic MER68-int|LTR|ERVL 15105 NM_001319083 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 415-29 chr8 40203074 40203345 + 3 NA Intergenic Intergenic 49727 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 513-31 chr8 81106048 81106361 + 3 NA intron (NM_018440, intron 1 of 8) AluSz|SINE|Alu 5864 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 634.5-11 chr3 112947431 112947780 + 3 NA intron (NM_138940, intron 1 of 2) intron (NM_138940, intron 1 of 2) 27498 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 438-10 chr14 63579129 63579363 + 3 NA Intergenic L2a|LINE|L2 -35851 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 458-28 chr6 151502471 151502645 + 3 NA intron (NM_025059, intron 1 of 10) intron (NM_025059, intron 1 of 10) 8541 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 351-42 chr8 137500056 137500186 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -86533 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 802-5 chr9 68628203 68628585 + 3 NA Intergenic Intergenic -76846 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 867-3 chr3 102974255 102974734 + 3 NA Intergenic L2a|LINE|L2 539479 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 654 chr1 23630941 23631352 + 3 NA intron (NM_001348075, intron 4 of 6) AluJb|SINE|Alu 3812 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 874.5-2 chr10 74224600 74225087 + 3 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 48080 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 565.5-2 chr1 228786261 228786582 + 3 NA Intergenic Intergenic 50942 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 750-7 chr2 15755284 15755629 + 3 NA Intergenic L2c|LINE|L2 64674 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 270-15 chr2 154679602 154679727 + 3 NA Intergenic Intergenic -18917 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 498-17 chr2 200916000 200916217 + 3 NA intron (NR_033915, intron 15 of 16) intron (NR_033915, intron 15 of 16) 24190 NM_001142356 60491 Hs.145284 NM_021824 ENSG00000196290 NIF3L1 ALS2CR1|CALS-7|MDS015 NGG1 interacting factor 3 like 1 protein-coding 420-5 chr10 115243789 115243989 + 3 NA intron (NM_207303, intron 10 of 28) intron (NM_207303, intron 10 of 28) 150524 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 371.5-8 chr15 52401917 52402055 + 3 NA intron (NM_001142495, intron 9 of 39) intron (NM_001142495, intron 9 of 39) -106182 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 403.5-22 chr6 70054349 70054606 + 3 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 187921 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 365-8 chr12 117281867 117282111 + 3 NA intron (NM_001204213, intron 6 of 27) intron (NM_001204213, intron 6 of 27) 23063 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 256-35 chrX 44383010 44383122 + 3 NA Intergenic Intergenic -39394 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 453-36 chrX 43352681 43352968 + 3 NA Intergenic L2c|LINE|L2 175830 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 383-35 chr6 166112091 166112250 + 3 NA Intergenic L1MC4a|LINE|L1 14450 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 589-3 chr12 12499174 12499556 + 3 NA intron (NM_030640, intron 4 of 6).2 intron (NM_030640, intron 4 of 6).2 63498 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 679 chr10 5968017 5968324 + 3 NA intron (NM_001351095, intron 2 of 6) L1M|LINE|L1 758 NM_001351096 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 405-25 chr4 162334371 162334557 + 3 NA Intergenic Intergenic -170430 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 304-18 chr2 41596574 41596733 + 3 NA Intergenic Intergenic -280902 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 469-6 chr11 31551607 31551912 + 3 NA intron (NM_001288725, intron 3 of 10) intron (NM_001288725, intron 3 of 10) 41992 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 290.5-2 chr1 42649946 42650124 + 3 NA intron (NM_001080850, intron 15 of 16) L1MA3|LINE|L1 -8388 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 944 chr14 55711849 55712377 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -54132 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 240-34 chr4 73419727 73419879 + 3 NA intron (NM_000477, intron 13 of 14) intron (NM_000477, intron 13 of 14) 15516 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 597-20 chr6 71580094 71580338 + 3 NA Intergenic MIR|SINE|MIR 159189 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 380-26 chr8 132751524 132751694 + 3 NA intron (NM_001364885, intron 4 of 9) (TGAA)n|Simple_repeat|Simple_repeat 8973 NM_001364885 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 675-11 chr5 159823468 159823711 + 3 NA intron (NR_109891, intron 2 of 2) MLT1A|LTR|ERVL-MaLR 47795 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 382-25 chr2 102635480 102635654 + 3 NA intron (NM_003048, intron 1 of 11) intron (NM_003048, intron 1 of 11) 16014 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 372-14 chr14 56681280 56681627 + 3 NA Intergenic L1MC2|LINE|L1 101655 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 583.5-2 chr1 165148027 165148361 + 3 NA Intergenic Intergenic 208047 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 579-12 chr20 13608552 13608767 + 3 NA intron (NM_001323604, intron 4 of 14) MER58B|DNA|hAT-Charlie 30273 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 506 chr1 40003648 40003870 + 3 NA Intergenic L2b|LINE|L2 -36306 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 481.5-15 chr5 130738600 130738843 + 3 NA Intergenic L1M4b|LINE|L1 426535 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 442.5-26 chr9 91872535 91872806 + 3 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 77558 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 344.5-17 chr2 237761573 237761697 + 3 NA intron (NM_001137551, intron 7 of 11) Charlie7a|DNA|hAT-Charlie -37110 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 454.5-4 chr16 1452585 1452849 + 3 NA intron (NM_001287, intron 15 of 24) CpG -8228 NM_001143980 645811 Hs.355232 NM_001143980 ENSG00000197599 CCDC154 C16orf29 coiled-coil domain containing 154 protein-coding 627 chr1 33170462 33170959 + 3 NA intron (NM_018207, intron 1 of 4) intron (NM_018207, intron 1 of 4) 5840 NM_001330483 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 492-2 chr1 212630005 212630363 + 3 NA Intergenic Intergenic 5710 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 460.5-9 chr15 55672782 55672956 + 3 NA intron (NM_173814, intron 10 of 19) intron (NM_173814, intron 10 of 19) 70283 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 501.5-6 chr11 79482357 79482759 + 3 NA Intergenic Intergenic -41528 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 363-7 chr10 125341311 125341567 + 3 NA Intergenic HAL1ME|LINE|L1 -180409 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 454-8 chr15 63067097 63067405 + 3 NA intron (NM_001018006, intron 8 of 8) intron (NM_001018006, intron 8 of 8) -17864 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 435-14 chr2 168315900 168316183 + 3 NA Intergenic Intergenic -68446 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 811 chr15 58807252 58807700 + 3 NA intron (NM_001040450, intron 3 of 8) AluY|SINE|Alu 36174 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 220-32 chr8 125531665 125531792 + 3 NA Intergenic MER21C|LTR|ERVL 99519 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 476 chr1 45446427 45446709 + 3 NA intron (NM_001320800, intron 1 of 9) L1M5|LINE|L1 44595 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 436-21 chr2 172398130 172398317 + 3 NA Intergenic Intergenic -29113 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 594-15 chr7 81341371 81341733 + 3 NA Intergenic AluJb|SINE|Alu 220267 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 400.5-26 chr8 51468995 51469246 + 3 NA intron (NM_144651, intron 8 of 22) L1MEd|LINE|L1 340325 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 575-3 chr11 86892897 86893195 + 3 NA intron (NR_120592, intron 2 of 2) MLT1C|LTR|ERVL-MaLR -35092 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 387-2 chr1 23886419 23886691 + 3 NA intron (NM_001841, intron 1 of 1) intron (NM_001841, intron 1 of 1) -18186 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 359-25 chr2 176042215 176042382 + 3 NA Intergenic AluJb|SINE|Alu -39478 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 368-33 chr5 7345326 7345601 + 3 NA Intergenic Intergenic 2514 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 466.5-15 chr3 121853567 121853729 + 3 NA intron (NM_001320041, intron 2 of 4) L1MC5a|LINE|L1 18439 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 766.5-7 chr4 163705412 163706029 + 3 NA intron (NM_001166373, intron 3 of 7) L1ME3G|LINE|L1 -92186 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 414.5-17 chr3 127496855 127497119 + 3 NA TTS (NR_125397) TTS (NR_125397) 40793 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 445.5-3 chr12 45763788 45764238 + 3 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 34304 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 492-15 chr16 54122392 54122649 + 3 NA TTS (NM_001080432) TTS (NM_001080432) 83127 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 423-41 chrX 55133153 55133345 + 3 NA Intergenic Intergenic 27853 NM_001166703 90736 Hs.415414 NM_138362 ENSG00000182518 FAM104B CXorf44 family with sequence similarity 104 member B protein-coding 328-34 chr7 114955347 114955496 + 3 NA intron (NM_001166345, intron 3 of 4) L2b|LINE|L2 33267 NM_001166345 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 584-10 chr2 215685812 215686037 + 3 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -32119 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 324.5-4 chr1 167775993 167776117 + 3 NA intron (NM_024569, intron 4 of 4) intron (NM_024569, intron 4 of 4) 54073 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 641.5-4 chr22 47744012 47744295 + 3 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 112479 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 662-9 chr6 115526876 115527267 + 3 NA Intergenic Intergenic 116764 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 498-9 chr14 42389382 42389686 + 3 NA Intergenic Intergenic 782678 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 691-2 chr12 32203038 32203574 + 3 NA intron (NR_148725, intron 1 of 9) L1M5|LINE|L1 96459 NM_001714 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 448-36 chr9 90670197 90670422 + 3 NA Intergenic Intergenic -27485 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 427.5-27 chr7 123252098 123252287 + 3 NA Intergenic MIRb|SINE|MIR -52221 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 429-28 chr5 34738749 34738948 + 3 NA intron (NM_001145525, intron 4 of 19) L1M6B|LINE|L1 51289 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 545-20 chr6 23714404 23714710 + 3 NA Intergenic MIRc|SINE|MIR -411658 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 750-2 chr1 152134323 152134599 + 3 NA Intergenic L1M1|LINE|L1 -19007 NM_007113 7062 Hs.432416 NM_007113 ENSG00000159450 TCHH THH|THL|TRHY|UHS3 trichohyalin protein-coding 545.5-13 chr7 48595965 48596304 + 3 NA intron (NM_152701, intron 58 of 61) intron (NM_152701, intron 58 of 61) -328413 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 472-2 chr10 103811913 103812128 + 3 NA intron (NM_014631, intron 1 of 13) intron (NM_014631, intron 1 of 13) 43386 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 951-4 chr8 109902919 109903340 + 3 NA Intergenic Intergenic 72642 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 678-5 chr3 3330578 3330989 + 3 NA Intergenic Intergenic -151066 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 514-19 chr6 35635050 35635278 + 3 NA intron (NM_001145775, intron 4 of 11) AluSz6|SINE|Alu 29625 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 388-35 chr8 134102791 134103066 + 3 NA Intergenic L1ME1|LINE|L1 216432 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 423-14 chr16 81964901 81965059 + 3 NA Intergenic L1ME3Cz|LINE|L1 46490 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 460-22 chr8 109251479 109251730 + 3 NA intron (NM_032869, intron 8 of 9) L1MCc|LINE|L1 78329 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 709-6 chr2 84386207 84386498 + 3 NA Intergenic L2a|LINE|L2 72928 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 355-20 chr2 160965539 160965724 + 3 NA Intergenic Intergenic -171324 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 464-28 chr8 49109686 49109965 + 3 NA Intergenic Intergenic 37481 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 422-4 chr11 29493020 29493184 + 3 NA Intergenic Intergenic -101311 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 686-5 chr3 127657566 127657974 + 3 NA intron (NM_015720, intron 2 of 7) L3|LINE|CR1 -15168 NR_033429 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 438-17 chr2 58577860 58578081 + 3 NA intron (NR_033873, intron 1 of 13) L2a|LINE|L2 57217 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 651-4 chr15 100204554 100204916 + 3 NA intron (NM_139057, intron 7 of 21) L1M4|LINE|L1 137240 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 451.5-26 chrX 150113695 150113984 + 3 NA Intergenic Intergenic -114165 NR_031748 100313839 NR_031748 ENSG00000252454 MIR2114 - microRNA 2114 ncRNA 600.5-9 chr8 132826392 132826671 + 3 NA intron (NM_001277196, intron 13 of 19) L1ME3E|LINE|L1 -40427 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 480.5-8 chr4 13238410 13238666 + 3 NA Intergenic LTR37B|LTR|ERV1 245802 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 404-28 chr3 66947064 66947257 + 3 NA Intergenic Intergenic -51147 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 384-21 chr3 4995343 4995536 + 3 NA Intergenic Intergenic -15478 NR_125915 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 372-35 chr6 121169397 121169618 + 3 NA intron (NM_152730, intron 22 of 31) intron (NM_152730, intron 22 of 31) 164973 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 498.5-19 chr8 132595411 132595660 + 3 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -34056 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 477-22 chr7 99404635 99404931 + 3 NA intron (NM_014891, intron 2 of 5) intron (NM_014891, intron 2 of 5) 3814 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 1287.5 chr19 46068060 46068764 + 3 NA intron (NR_163177, intron 1 of 5) intron (NR_163177, intron 1 of 5) 9217 NR_125344 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 365.5-17 chr5 37638578 37638912 + 3 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 196077 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 580-20 chr8 78866383 78866623 + 3 NA Intergenic L1MA2|LINE|L1 28974 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 457.5-7 chr12 5850586 5850971 + 3 NA intron (NM_001278596, intron 4 of 25) intron (NM_001278596, intron 4 of 25) 94481 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 685.5-6 chr5 8710327 8710842 + 3 NA Intergenic Intergenic -129148 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 828-4 chr8 23045654 23046121 + 3 NA intron (NM_147187, intron 1 of 9) L1MA7|LINE|L1 -22342 NR_038873 286059 Hs.306673 NR_038873 ENSG00000246130 LOC286059 - TNF receptor superfamily member 10d pseudogene pseudo 378-6 chr12 47463309 47463518 + 3 NA Intergenic Intergenic 48405 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 881-2 chr2 81602212 81602540 + 3 NA Intergenic MIR|SINE|MIR -135430 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 824-5 chr4 163147908 163148268 + 3 NA intron (NM_138386, intron 3 of 7) MLT1D|LTR|ERVL-MaLR 18802 NM_138386 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 729-2 chr12 28687561 28687964 + 3 NA Intergenic Intergenic -461516 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 462-15 chr14 68013157 68013354 + 3 NA intron (NM_133509, intron 7 of 10) MLT1G1|LTR|ERVL-MaLR 189663 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 495-21 chr8 121156191 121156429 + 3 NA Intergenic L1ME2|LINE|L1 -344264 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 346-34 chr8 86675545 86675702 + 3 NA intron (NM_019098, intron 3 of 17) AluJr|SINE|Alu 68052 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 435-11 chr18 75428543 75428731 + 3 NA promoter-TSS (NM_001303482) promoter-TSS (NM_001303482) -934 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 531-30 chr8 78313485 78313808 + 3 NA Intergenic Intergenic -202694 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 520-8 chr12 124578431 124578754 + 3 NA Intergenic MIR|SINE|MIR -10980 NM_006312 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 490-28 chr5 77690907 77691242 + 3 NA TTS (NM_001297740) TTS (NM_001297740) -52377 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 406-7 chr17 61786612 61786819 + 3 NA intron (NM_032043, intron 10 of 19) L1MB7|LINE|L1 76844 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 865.5-4 chr15 88384347 88384921 + 3 NA Intergenic AluSc|SINE|Alu 82754 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 492-8 chr12 117561422 117561669 + 3 NA intron (NM_173598, intron 7 of 19) MIR|SINE|MIR -199743 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 360-38 chr5 13948693 13948877 + 3 NA Intergenic Intergenic -4305 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 588-23 chr20 7887610 7887962 + 3 NA intron (NM_017545, intron 5 of 7) intron (NM_017545, intron 5 of 7) 52672 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 450-9 chr17 59871409 59871644 + 3 NA intron (NM_001193612, intron 6 of 8) HAL1|LINE|L1 21417 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 874 chr14 43107114 43107493 + 3 NA Intergenic L2a|LINE|L2 1399980 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 750.5-5 chr2 200783812 200784312 + 3 NA intron (NR_135012, intron 29 of 30) intron (NR_135012, intron 29 of 30) -27484 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 334.5-29 chr7 31357949 31358160 + 3 NA Intergenic MER96|DNA|hAT-Tip100 -17328 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 682.5-6 chr2 15284854 15285194 + 3 NA intron (NR_052013, intron 42 of 50) intron (NR_052013, intron 42 of 50) 276310 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 348-13 chr14 70087931 70088226 + 3 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -7861 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 863-6 chr5 102481943 102482462 + 3 NA intron (NM_173488, intron 1 of 13) intron (NM_173488, intron 1 of 13) 16799 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 803-6 chr16 63343552 63343884 + 3 NA Intergenic Intergenic -1307280 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 531-31 chr8 89106317 89106621 + 3 NA Intergenic Intergenic 651242 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 272-5 chr11 38817467 38817623 + 3 NA Intergenic Intergenic 168687 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 502.5-10 chr4 96234127 96234301 + 3 NA Intergenic L1MC3|LINE|L1 -76489 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 381.5-6 chr14 63072954 63073095 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -27566 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 475-27 chr6 65441753 65441943 + 3 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 137956 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 738.5-5 chr4 95717075 95717496 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -122808 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 648-8 chr2 67479750 67480101 + 3 NA Intergenic Intergenic 82592 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 331.5-5 chr1 241271714 241271849 + 3 NA intron (NM_001282778, intron 2 of 16) MLT2B1|LTR|ERVL 84045 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 553-8 chr3 184182650 184183045 + 3 NA exon (NM_004068, exon 11 of 12) exon (NM_004068, exon 11 of 12) -3228 NM_001351299 55324 Hs.361323 NM_018358 ENSG00000161204 ABCF3 EST201864 ATP binding cassette subfamily F member 3 protein-coding 891 chr17 68738761 68739187 + 3 NA Intergenic L1ME3|LINE|L1 110820 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 435-40 chr8 132067574 132067784 + 3 NA intron (NM_001145095, intron 14 of 15) intron (NM_001145095, intron 14 of 15) -8297 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 506-2 chr1 116344562 116345152 + 3 NA Intergenic Intergenic -28387 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 408-21 chr2 49366284 49366519 + 3 NA Intergenic Intergenic -211874 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 715-7 chr8 126696548 126696898 + 3 NA Intergenic L2c|LINE|L2 -138245 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 462-11 chr11 39476991 39477203 + 3 NA Intergenic Intergenic 816033 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 591-11 chr6 126358357 126358689 + 3 NA intron (NR_104462, intron 2 of 3) L1P4a|LINE|L1 18408 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 354-12 chr19 51248836 51249022 + 3 NA Intergenic MER57E1|LTR|ERV1 -2151 NR_102324 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 352-17 chr2 39002765 39002953 + 3 NA intron (NM_005633, intron 17 of 22) AluJb|SINE|Alu -42515 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 397-7 chr12 24128272 24128427 + 3 NA intron (NM_152989, intron 4 of 17) L2b|LINE|L2 -84072 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 621-10 chr3 22472169 22472433 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 515162 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 342-6 chr10 64039788 64039949 + 3 NA Intergenic Intergenic -517978 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 592 chr10 20810077 20810392 + 3 NA intron (NM_006393, intron 24 of 27) intron (NM_006393, intron 24 of 27) 87368 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 318.5-13 chr18 646242 646348 + 3 NA intron (NM_199167, intron 8 of 8) intron (NM_199167, intron 8 of 8) -11358 NM_001354868 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 367.5-39 chr9 134740278 134740499 + 3 NA intron (NM_001278074, intron 11 of 65) intron (NM_001278074, intron 11 of 65) -87545 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 528.5-3 chr10 14923123 14923558 + 3 NA intron (NR_146960, intron 10 of 13) MER5B|DNA|hAT-Charlie 30756 NM_001289077 64421 Hs.655932 NM_022487 ENSG00000152457 DCLRE1C A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C DNA cross-link repair 1C protein-coding 371.5-25 chr6 154580533 154580657 + 3 NA Intergenic L1MEc|LINE|L1 -69910 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 352.5-11 chr16 66988921 66989104 + 3 NA intron (NM_001364782, intron 1 of 13) MIRc|SINE|MIR 423 NM_001364782 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 345-27 chr3 197049749 197049936 + 3 NA intron (NM_001366216, intron 23 of 23) AluJo|SINE|Alu -20025 NM_005929 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 586-5 chr14 35513157 35513560 + 3 NA Intergenic Intergenic -20806 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 423.5-10 chr14 19747194 19747455 + 3 NA promoter-TSS (NM_172194) promoter-TSS (NM_172194) -104 NM_172194 441669 Hs.553828 NM_172194 ENSG00000182652 OR4Q3 C14orf13|HSA6|OR14-3|OR4Q4|c14_5008 olfactory receptor family 4 subfamily Q member 3 protein-coding 550-21 chr5 124190471 124190654 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 247958 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 413.5-13 chr2 127624607 127624867 + 3 NA intron (NM_001080527, intron 29 of 46) intron (NM_001080527, intron 29 of 46) -21127 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 451.5-3 chr1 202743375 202743612 + 3 NA intron (NM_001314042, intron 17 of 27) intron (NM_001314042, intron 17 of 27) -33039 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 325-3 chr11 93399193 93399417 + 3 NA intron (NM_181645, intron 11 of 13) L1MC|LINE|L1 68588 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 520.5-13 chr4 82105164 82105503 + 3 NA Intergenic L1MB2|LINE|L1 268658 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 364.5-11 chr17 78825112 78825275 + 3 NA intron (NM_001321291, intron 6 of 20) intron (NM_001321291, intron 6 of 20) 15334 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 540-9 chr12 14953293 14953531 + 3 NA intron (NM_001175, intron 1 of 5) intron (NM_001175, intron 1 of 5) -2261 NM_001321422 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 734.5 chr12 55727909 55728331 + 3 NA promoter-TSS (NM_001257401) promoter-TSS (NM_001257401) -220 NM_001257400 967 Hs.445570 NM_001780 ENSG00000135404 CD63 LAMP-3|ME491|MLA1|OMA81H|TSPAN30 CD63 molecule protein-coding 541.5-10 chr2 10758157 10758414 + 3 NA intron (NM_001039362, intron 4 of 13) intron (NM_001039362, intron 4 of 13) 36655 NM_144583 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 345.5-8 chr11 91821587 91821821 + 3 NA Intergenic Intergenic -403330 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 732-12 chr3 136172993 136173501 + 3 NA intron (NM_018133, intron 1 of 1) L2c|LINE|L2 21221 NM_001145417 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 MSL complex subunit 2 protein-coding 518-16 chr3 116276768 116277004 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -83138 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 381.5-23 chr7 91775541 91775980 + 3 NA Intergenic Intergenic 104942 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 316-11 chr15 38411137 38411249 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -42934 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 436.5-9 chr20 37241577 37241834 + 3 NA TTS (NM_001324303) TTS (NM_001324303) 15203 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 571.5-6 chr4 90106151 90106605 + 3 NA Intergenic Intergenic -21155 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 700-9 chr2 73095930 73096289 + 3 NA intron (NM_001371272, intron 1 of 5) intron (NM_001371272, intron 1 of 5) 16839 NM_001371272 534-4 chr10 94551866 94552159 + 3 NA intron (NM_001289075, intron 2 of 20) AluY|SINE|Alu 6224 NM_001289074 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 192-2 chr1 168731378 168731457 + 3 NA Intergenic Intergenic -2211 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 634.5-16 chr8 17027944 17028294 + 3 NA intron (NR_146233, intron 1 of 15) intron (NR_146233, intron 1 of 15) 881 NM_001349810 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 346.5-27 chr7 12901191 12901340 + 3 NA Intergenic MIR|SINE|MIR 213632 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 327-32 chr21 32219150 32219278 + 3 NA Intergenic L1PA2|LINE|L1 59835 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 449-24 chr5 95776913 95777139 + 3 NA intron (NM_014899, intron 8 of 11) intron (NM_014899, intron 8 of 11) -44924 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 702.5 chr14 62598852 62599314 + 3 NA Intergenic L1MA8|LINE|L1 446375 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 449-11 chr12 57007915 57008074 + 3 NA Intergenic Intergenic -1448 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 819-2 chr15 50303970 50304318 + 3 NA intron (NM_016654, intron 2 of 8) intron (NM_016654, intron 2 of 8) -38418 NM_002112 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 340.5-14 chr2 57004993 57005135 + 3 NA Intergenic Intergenic -819294 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1071 chr8 126684970 126685512 + 3 NA Intergenic Intergenic -126763 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 630-9 chr15 67964779 67965304 + 3 NA Intergenic AluJb|SINE|Alu -89138 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 301.5-20 chr7 2279413 2279577 + 3 NA intron (NM_013321, intron 1 of 10) AluJb|SINE|Alu -21918 NR_106895 102465503 NR_106895 ENSG00000284047 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 359-12 chr12 97757143 97757280 + 3 NA promoter-TSS (NR_077240) promoter-TSS (NR_077240) -694 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 410-20 chr3 23532070 23532252 + 3 NA intron (NM_001370225, intron 4 of 5) intron (NM_001370225, intron 4 of 5) -273794 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 334.5-5 chr10 18091652 18091782 + 3 NA Intergenic Intergenic -48707 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 772-6 chr2 186401266 186401555 + 3 NA Intergenic Intergenic -84850 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 625-18 chr6 93429913 93430253 + 3 NA Intergenic L1ME3B|LINE|L1 -10501 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 661-5 chr2 85110935 85111253 + 3 NA Intergenic LTR16E2|LTR|ERVL -22298 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 364-23 chr3 29173505 29173662 + 3 NA Intergenic Intergenic 107356 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 442-17 chr5 124684826 124685067 + 3 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 60166 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 689-9 chr2 191214032 191214339 + 3 NA Intergenic L2c|LINE|L2 -31219 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 616-11 chr6 166531957 166532299 + 3 NA intron (NM_001006932, intron 3 of 21) MamTip2|DNA|hAT-Tip100 12562 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 503.5-2 chr10 26180069 26180425 + 3 NA intron (NM_017433, intron 31 of 34) L1ME4a|LINE|L1 -36060 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 732-15 chr6 110175170 110175505 + 3 NA intron (NM_001024935, intron 1 of 9) intron (NM_001024935, intron 1 of 9) 4333 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 584-13 chr22 34057184 34057410 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -134409 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 415-31 chr9 39587500 39587646 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -123047 NR_003528 401509 Hs.449445 NM_001032297 ZNF658B - zinc finger protein 658B (pseudogene) pseudo 525-3 chr11 46049625 46049854 + 3 NA intron (NR_147890, intron 5 of 18) intron (NR_147890, intron 5 of 18) 71080 NM_001352029 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 493-17 chr20 55854516 55854945 + 3 NA Intergenic Intergenic 150789 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 577.5-2 chr1 115677450 115677777 + 3 NA intron (NM_001172411, intron 4 of 7) intron (NM_001172411, intron 4 of 7) 34984 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 441-16 chr18 2727869 2728142 + 3 NA intron (NM_015295, intron 22 of 47) intron (NM_015295, intron 22 of 47) 72118 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 446-20 chr2 26886417 26886655 + 3 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 38112 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 448-28 chr6 81629313 81629486 + 3 NA Intergenic Intergenic 123282 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 373-9 chr11 115991468 115991652 + 3 NA Intergenic Intergenic -231360 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 564-15 chr20 19291804 19292056 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -7334 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 788-10 chr8 106209716 106210105 + 3 NA Intergenic Intergenic -60268 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 721 chr11 28668470 28668738 + 3 NA Intergenic Intergenic -191056 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 482 chr1 174219575 174219778 + 3 NA intron (NM_001366446, intron 2 of 25) intron (NM_001366446, intron 2 of 25) -55424 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 540-5 chr10 107669013 107669403 + 3 NA Intergenic Intergenic 400085 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 489-14 chr14 88636797 88637096 + 3 NA intron (NM_183387, intron 31 of 42) intron (NM_183387, intron 31 of 42) 42526 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 1319 chr2 69658340 69659002 + 3 NA intron (NM_001320698, intron 2 of 14) Charlie2a|DNA|hAT-Charlie 14863 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 671-13 chr6 39070386 39070721 + 3 NA intron (NR_136563, intron 5 of 13) L1ME3C|LINE|L1 -3761 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 436-15 chr2 53089359 53089548 + 3 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -386838 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 310.5-31 chr3 106537104 106537278 + 3 NA Intergenic L1PA8|LINE|L1 -667790 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 685-2 chr12 2662876 2663235 + 3 NA intron (NM_199460, intron 36 of 49).2 L1ME3C|LINE|L1 9165 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 454-28 chr6 63638326 63638483 + 3 NA intron (NM_001290260, intron 1 of 3) intron (NM_001290260, intron 1 of 3) 1923 NM_001290260 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 312-24 chr4 177421094 177421238 + 3 NA Intergenic L1MC1|LINE|L1 21271 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 579-24 chr7 25351491 25351749 + 3 NA Intergenic Intergenic -123134 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 320-38 chr9 78891353 78891526 + 3 NA Intergenic Intergenic 254227 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 462-34 chr5 142407832 142408085 + 3 NA intron (NR_120664, intron 3 of 3) L2a|LINE|L2 82665 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 620-3 chr11 74920774 74921011 + 3 NA intron (NM_001270380, intron 8 of 14) intron (NM_001270380, intron 8 of 14) 28199 NM_001270381 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 320-9 chr17 66085025 66085220 + 3 NA intron (NM_001302891, intron 6 of 24) intron (NM_001302891, intron 6 of 24) 106770 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 385-36 chr7 5403042 5403232 + 3 NA intron (NM_001080495, intron 2 of 29) intron (NM_001080495, intron 2 of 29) 20409 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 764-8 chr5 24914064 24914407 + 3 NA Intergenic Intergenic -73652 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 478-12 chr18 58303953 58304198 + 3 NA intron (NM_001144965, intron 5 of 30) MER20|DNA|hAT-Charlie 82504 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 604.5-12 chr5 61657399 61657740 + 3 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 19788 NR_126524 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 373-18 chr16 19947633 19947784 + 3 NA Intergenic Tigger16a|DNA|TcMar-Tigger -62074 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 576-5 chr17 47122161 47122413 + 3 NA intron (NM_001256, intron 18 of 18) MIRb|SINE|MIR 67008 NM_001293091 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 879 chr10 94644061 94644661 + 3 NA Intergenic Intergenic -39368 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 513.5-3 chr11 76911412 76911768 + 3 NA intron (NM_001300953, intron 1 of 9) MER41B|LTR|ERV1 50672 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 808-8 chr5 156278544 156278901 + 3 NA Intergenic Intergenic -48035 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 474-24 chr5 25070742 25070941 + 3 NA Intergenic Intergenic 119815 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 892.5-2 chr14 50284699 50285247 + 3 NA intron (NM_024884, intron 4 of 9) AluSx4|SINE|Alu 14973 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 599-3 chr14 70881481 70881764 + 3 NA Intergenic Intergenic -25837 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 466 chr1 26493229 26493425 + 3 NA Intergenic Intergenic 20887 NM_005517 3151 Hs.181163 NM_005517 ENSG00000198830 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 537-23 chr9 35190433 35190774 + 3 NA intron (NM_006377, intron 1 of 38) HUERS-P3b-int|LTR|ERV1 28594 NM_001371186 568.5-3 chr16 84729131 84729365 + 3 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 29248 NM_001272075 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 443-26 chr3 29495903 29496355 + 3 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 214817 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 693-4 chr11 72333809 72334229 + 3 NA intron (NM_030813, intron 6 of 16) intron (NM_030813, intron 6 of 16) -89843 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 862.5-2 chr3 74592610 74593017 + 3 NA Intergenic Intergenic -71673 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 452-22 chr4 39935529 39935852 + 3 NA intron (NM_001100399, intron 2 of 32) L1M4|LINE|L1 42221 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 272.5-12 chr14 85001441 85001531 + 3 NA Intergenic Intergenic -270446 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 317 chr1 28560855 28561033 + 3 NA intron (NM_017846, intron 3 of 8) MIRb|SINE|MIR 7859 NM_017846 54952 Hs.533626 NM_017846 ENSG00000180098 TRNAU1AP PRO1902|SECP43|TRSPAP1 tRNA selenocysteine 1 associated protein 1 protein-coding 384-30 chr8 129101251 129101424 + 3 NA Intergenic Intergenic -135336 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 391.5-42 chr9 6247777 6247994 + 3 NA promoter-TSS (NM_001353802) promoter-TSS (NM_001353802) -586 NM_001353802 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 419-26 chr5 123378984 123379248 + 3 NA intron (NM_153223, intron 15 of 20) intron (NM_153223, intron 15 of 20) 44476 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 333-20 chr20 43519988 43520147 + 3 NA intron (NM_032107, intron 7 of 21) L1MB8|LINE|L1 5626 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 359-36 chr7 42853236 42853462 + 3 NA Intergenic Intergenic 58494 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 358-15 chr14 49745722 49745881 + 3 NA intron (NM_172193, intron 12 of 12) L2c|LINE|L2 -22352 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 316-44 chr8 82692692 82692830 + 3 NA Intergenic MIRb|SINE|MIR -219343 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 233-17 chr2 151939793 151939894 + 3 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 32209 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 325-9 chr2 70204887 70205078 + 3 NA Intergenic AluJo|SINE|Alu -13963 NM_017880 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 408-25 chr21 33285513 33285689 + 3 NA intron (NM_000628, intron 5 of 6) intron (NM_000628, intron 5 of 6) 19234 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 390-23 chr4 45290251 45290500 + 3 NA Intergenic L1PA13|LINE|L1 -563741 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 486-37 chr7 1241090 1241323 + 3 NA Intergenic CpG-25321 8334 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 338-25 chr3 122257785 122257930 + 3 NA intron (NM_001178065, intron 3 of 6) intron (NM_001178065, intron 3 of 6) -67391 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 439-10 chr3 106207122 106207422 + 3 NA Intergenic Intergenic -337871 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 300-34 chr9 83181217 83181364 + 3 NA Intergenic L3|LINE|CR1 85978 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 486-21 chr2 57053657 57053872 + 3 NA Intergenic Intergenic -853887 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 613.5-4 chr14 46884799 46885112 + 3 NA intron (NM_001113498, intron 10 of 16) AluSx1|SINE|Alu -233174 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 249-29 chr6 164306756 164306894 + 3 NA Intergenic Intergenic 515238 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 501-5 chr11 82576490 82576740 + 3 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 157249 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 454.5-12 chr20 63203759 63203985 + 3 NA intron (NM_017798, intron 3 of 4) intron (NM_017798, intron 3 of 4) 12259 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 241-6 chr14 40121329 40121470 + 3 NA Intergenic Intergenic -688899 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 411-22 chr2 219462227 219462468 + 3 NA exon (NM_005876, exon 8 of 41) exon (NM_005876, exon 8 of 41) 1535 NM_001173476 10290 Hs.21639 NM_005876 ENSG00000072195 SPEG APEG-1|APEG1|BPEG|CNM5|MYLK6|SPEGalpha|SPEGbeta striated muscle enriched protein kinase protein-coding 443-17 chr2 77098263 77098496 + 3 NA intron (NR_146416, intron 1 of 1) L1ME3C|LINE|L1 112414 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 316.5-16 chr2 118067513 118067623 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -20850 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 225-19 chr2 41808282 41808414 + 3 NA Intergenic L1MC4|LINE|L1 -69207 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 363-24 chr5 35065108 35065270 + 3 NA TTS (NM_001204315) TTS (NM_001204315) -17240 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 340.5-24 chr4 183087504 183087671 + 3 NA Intergenic Intergenic 11612 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 1008 chr5 178696323 178696788 + 3 NA Intergenic L1MEc|LINE|L1 34104 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 618-3 chr1 190234160 190234575 + 3 NA intron (NM_199051, intron 5 of 7) intron (NM_199051, intron 5 of 7) 241643 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 499-19 chr5 142585561 142585898 + 3 NA Intergenic L2b|LINE|L2 35605 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 351-15 chr17 32503054 32503208 + 3 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 16138 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 493.5-7 chr14 52253482 52253806 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -14054 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 419.5-5 chr11 37463960 37464114 + 3 NA Intergenic L1MA6|LINE|L1 -474564 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 559.5-10 chr2 107401883 107402200 + 3 NA Intergenic AluJo|SINE|Alu -52516 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 417-23 chr2 18780995 18781252 + 3 NA Intergenic Intergenic -191543 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 425.5-5 chr10 113644255 113644396 + 3 NA intron (NM_001322945, intron 11 of 40) intron (NM_001322945, intron 11 of 40) 19716 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 549 chr1 179887484 179887712 + 3 NA intron (NM_015602, intron 2 of 9) intron (NM_015602, intron 2 of 9) 5556 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 566-11 chr20 3585866 3586144 + 3 NA intron (NM_001207047, intron 18 of 24) L1MB7|LINE|L1 77394 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 353-3 chr1 106701983 106702183 + 3 NA Intergenic L2|LINE|L2 -116156 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 570-19 chr4 170060724 170061125 + 3 NA 3' UTR (NM_016228, exon 13 of 13) 3' UTR (NM_016228, exon 13 of 13) -27921 NR_125890 9848 Hs.593942 NM_021647 ENSG00000198948 MFAP3L NYD-sp9 microfibril associated protein 3 like protein-coding 532-12 chr5 32730046 32730298 + 3 NA intron (NM_001363652, intron 2 of 7) L1MD|LINE|L1 18851 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 422 chr10 22084065 22084298 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -80451 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 378-12 chr17 75895861 75896091 + 3 NA intron (NM_001256124, intron 1 of 4) intron (NM_001256124, intron 1 of 4) 975 NM_173547 201292 Hs.189823 NM_173547 ENSG00000141569 TRIM65 4732463G12Rik tripartite motif containing 65 protein-coding 592.5 chr1 41901366 41901612 + 3 NA intron (NR_038261, intron 2 of 3) L2b|LINE|L2 17433 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 363-30 chr7 3265704 3265989 + 3 NA Intergenic Intergenic -35406 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 633 chr14 56755637 56756001 + 3 NA Intergenic Intergenic 49848 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 516-24 chr4 64648991 64649267 + 3 NA Intergenic LTR33A|LTR|ERVL -239669 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 649.5-7 chr3 147253320 147253747 + 3 NA Intergenic Intergenic 138897 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 627.5-13 chr9 77829248 77829610 + 3 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) -181107 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 618-5 chr10 31241018 31241397 + 3 NA intron (NR_134478, intron 1 of 2) intron (NR_134478, intron 1 of 2) 53324 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 558-15 chr3 171803886 171804182 + 3 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 6449 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 422.5-9 chr20 2108061 2108442 + 3 NA intron (NM_080836, intron 2 of 3) AluSx1|SINE|Alu 6424 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 408-27 chr3 96698037 96698265 + 3 NA Intergenic L1MA2|LINE|L1 -116443 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 271.5-32 chr5 137030687 137030797 + 3 NA intron (NM_004598, intron 6 of 10) L1ME4a|LINE|L1 -97455 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 488-2 chr12 26364569 26364869 + 3 NA intron (NM_002223, intron 55 of 56) MamRep605|LTR?|LTR? 169146 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 525.5-2 chr13 30581379 30581630 + 3 NA intron (NM_001370340, intron 1 of 4) MER58A|DNA|hAT-Charlie 36083 NM_001370340 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 663-5 chr11 87834205 87834547 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -114965 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 340.5-27 chr5 169054362 169054569 + 3 NA intron (NM_003062, intron 4 of 35) MLT1C|LTR|ERVL-MaLR 41238 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 578 chr1 225139002 225139244 + 3 NA intron (NM_001367479, intron 27 of 85) intron (NM_001367479, intron 27 of 85) 209448 NM_001349911 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 485.5-15 chr5 53167224 53167589 + 3 NA Intergenic MIR|SINE|MIR 57564 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 796-4 chr3 179844287 179844706 + 3 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -53698 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 652-3 chr12 14238349 14238764 + 3 NA Intergenic Intergenic -127076 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 442-21 chr7 158681413 158681692 + 3 NA intron (NM_001281932, intron 10 of 28) intron (NM_001281932, intron 10 of 28) 23252 NM_001281933 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 475-4 chr11 47549536 47549834 + 3 NA intron (NM_006560, intron 1 of 13) L1MB3|LINE|L1 3447 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 592-10 chr2 218316494 218316834 + 3 NA intron (NM_015488, intron 2 of 9) intron (NM_015488, intron 2 of 9) -6515 NM_022572 25953 Hs.98475 NM_015488 ENSG00000127838 PNKD BRP17|DYT8|FKSG19|FPD1|KIPP1184|MR-1|MR-1S|MR1|PDC|PKND1|PNKD1|TAHCCP2 PNKD metallo-beta-lactamase domain containing protein-coding 425.5 chr1 41157619 41157890 + 3 NA intron (NM_001031694, intron 3 of 15) intron (NM_001031694, intron 3 of 15) 3678 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 693-5 chr2 214771054 214771305 + 3 NA intron (NR_104216, intron 3 of 9) intron (NR_104216, intron 3 of 9) 38504 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 465-25 chr2 117043175 117043352 + 3 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -771428 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 444-2 chr10 31027274 31027511 + 3 NA intron (NM_001143766, intron 1 of 7) intron (NM_001143766, intron 1 of 7) 4545 NM_001143766 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 250.5-18 chr2 26614703 26614812 + 3 NA intron (NM_001029881, intron 3 of 6) intron (NM_001029881, intron 3 of 6) 26609 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 562-10 chr4 43218301 43218613 + 3 NA Intergenic Intergenic 274086 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 595.5-4 chr16 60179883 60180199 + 3 NA Intergenic Intergenic 179752 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 316-5 chr10 58010846 58011067 + 3 NA Intergenic L1M5|LINE|L1 256938 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 331.5-8 chr13 74899704 74899867 + 3 NA Intergenic L1M5|LINE|L1 340596 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 504-27 chr9 122802011 122802257 + 3 NA Intergenic Intergenic 2011 NM_080859 392392 Hs.632681 NM_080859 ENSG00000165204 OR1K1 hg99 olfactory receptor family 1 subfamily K member 1 protein-coding 744.5-2 chr5 18962389 18962687 + 3 NA Intergenic Intergenic 923734 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 520.5-9 chr2 120841092 120841412 + 3 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 48971 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 592.5-10 chr3 39386723 39386973 + 3 NA intron (NM_001354798, intron 1 of 5) L2b|LINE|L2 3478 NM_001354798 54977 Hs.369615 NM_017875 ENSG00000144659 SLC25A38 SIDBA2 solute carrier family 25 member 38 protein-coding 586-16 chr7 84179685 84179906 + 3 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 14994 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 498-29 chrX 30953335 30953540 + 3 NA Intergenic L2a|LINE|L2 -64183 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 301.5-16 chr6 4314909 4315071 + 3 NA Intergenic Intergenic -124961 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 498-23 chr6 40895343 40895668 + 3 NA intron (NR_110873, intron 2 of 5) MIRb|SINE|MIR 127775 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 607-23 chr7 3689591 3690003 + 3 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 388545 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 441-9 chr13 48889902 48890086 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -85918 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 338-5 chr11 18986575 18986782 + 3 NA Intergenic L1PBa|LINE|L1 -51676 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 713.5-4 chr2 104569306 104569576 + 3 NA Intergenic MER81|DNA|hAT-Blackjack -58932 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 415.5-22 chr9 73908733 73908871 + 3 NA Intergenic Intergenic -462729 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 448-5 chr11 35256540 35256855 + 3 NA 3' UTR (NM_004171, exon 11 of 11) 3' UTR (NM_004171, exon 11 of 11) 93747 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 445.5-15 chr3 190766392 190766573 + 3 NA Intergenic Intergenic 96212 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 806-5 chr17 62598493 62598864 + 3 NA intron (NM_001284363, intron 15 of 19) AluSg|SINE|Alu -28992 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 564-17 chr4 43676170 43676481 + 3 NA Intergenic (TTTTCC)n|Simple_repeat|Simple_repeat -183782 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 451.5-19 chr5 92699744 92699913 + 3 NA Intergenic Intergenic 871515 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 450-15 chr4 102120405 102120591 + 3 NA Intergenic L1MA3|LINE|L1 203814 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 401-21 chr2 209033638 209033889 + 3 NA Intergenic Intergenic -390284 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 504-16 chr3 86275932 86276250 + 3 NA Intergenic Intergenic -205852 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 386.5-24 chr6 53895577 53895717 + 3 NA intron (NM_018214, intron 4 of 13) intron (NM_018214, intron 4 of 13) -34335 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 423-5 chr13 70288347 70288574 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie -179967 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 610.5-13 chr5 73339792 73340163 + 3 NA Intergenic Intergenic 2071 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 577-7 chr3 182678484 182678770 + 3 NA Intergenic Intergenic -114877 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 331-21 chr15 98774508 98774676 + 3 NA intron (NM_000875, intron 2 of 20) L1MB3|LINE|L1 -9834 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 470-31 chr5 38199536 38199825 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 51200 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 820.5 chr14 44771230 44771506 + 3 NA intron (NR_146457, intron 2 of 4) L1MD2|LINE|L1 27758 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 607.5-5 chr14 66035102 66035367 + 3 NA Intergenic Intergenic -451137 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 462-31 chr5 85698202 85698418 + 3 NA Intergenic L1PREC2|LINE|L1 -584134 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 459-29 chr7 4836335 4836526 + 3 NA TTS (NR_145804) TTS (NR_145804) 1020 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 457-14 chr3 17327585 17327889 + 3 NA intron (NM_014744, intron 13 of 21) L2a|LINE|L2 372283 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 375-32 chr7 35414148 35414374 + 3 NA Intergenic Intergenic 100406 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 414-34 chr5 139151697 139151909 + 3 NA intron (NM_022464, intron 1 of 9) intron (NM_022464, intron 1 of 9) 46565 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 552-18 chr5 77111802 77112093 + 3 NA intron (NR_024398, intron 2 of 3) L2c|LINE|L2 -24662 NM_032367 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 468-8 chr12 116228578 116228774 + 3 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 48510 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 384.5-22 chr7 4004734 4004949 + 3 NA intron (NM_152744, intron 14 of 44) L1MC5a|LINE|L1 -124844 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 548-15 chr3 42021824 42022075 + 3 NA Intergenic Intergenic -59846 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 256.5-2 chr1 117837419 117837557 + 3 NA Intergenic L1M5|LINE|L1 92133 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 376-22 chr4 165536588 165536732 + 3 NA Intergenic Intergenic -147979 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 468-36 chr5 139012954 139013240 + 3 NA intron (NM_022464, intron 7 of 9) L1MC5|LINE|L1 137697 NM_001323994 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 642-15 chr6 144805507 144805839 + 3 NA intron (NM_007124, intron 64 of 73) MER45A|DNA|hAT-Tip100 400018 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 506.5-4 chr11 114733800 114734043 + 3 NA Intergenic Intergenic 55394 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 1082.5 chr14 72057560 72058249 + 3 NA intron (NM_001370288, intron 2 of 16) MamRTE1|LINE|RTE-BovB 124377 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 636.5-4 chr2 168205549 168205932 + 3 NA intron (NM_013233, intron 1 of 17) AluJr|SINE|Alu 41855 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 391-12 chr2 121522957 121523144 + 3 NA intron (NM_015282, intron 6 of 38) MIRb|SINE|MIR -7830 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 552-16 chr22 45245830 45246072 + 3 NA Intergenic AluSx1|SINE|Alu -5182 NM_001009880 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 637-9 chr5 30879408 30879703 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -314131 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 362.5-9 chr12 12882817 12883071 + 3 NA Intergenic Intergenic 7467 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 496.5-4 chr11 113325590 113325881 + 3 NA intron (NM_001318533, intron 6 of 21) MER63A|DNA|hAT-Blackjack 11152 NM_017868 54970 Hs.288772 NM_017868 ENSG00000149292 TTC12 TPARM tetratricopeptide repeat domain 12 protein-coding 717-7 chr22 26322996 26323436 + 3 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -106044 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 553.5-3 chr12 65765316 65765646 + 3 NA intron (NR_026825, intron 1 of 1) intron (NR_026825, intron 1 of 1) -58979 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 628-10 chr2 226479799 226480181 + 3 NA Intergenic Intergenic 178803 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 607-17 chr2 179483702 179484033 + 3 NA intron (NR_148056, intron 5 of 9) intron (NR_148056, intron 5 of 9) 78721 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 340-33 chr5 88947242 88947446 + 3 NA intron (NR_136220, intron 3 of 7) intron (NR_136220, intron 3 of 7) -43239 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 451-6 chr10 115225554 115225741 + 3 NA intron (NM_207303, intron 9 of 28) L1MEg|LINE|L1 132282 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 660-4 chr11 129114555 129114909 + 3 NA intron (NM_001142685, intron 4 of 21) intron (NM_001142685, intron 4 of 21) 77466 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 682.5-7 chr3 196522758 196522990 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -7528 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 253.5-28 chr5 87211928 87212091 + 3 NA intron (NR_105018, intron 2 of 3) MER113|DNA|hAT-Charlie 27192 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 322-21 chr8 119171936 119172056 + 3 NA Intergenic L2c|LINE|L2 -36367 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 398-37 chr8 124090892 124091068 + 3 NA intron (NM_001039112, intron 33 of 40) L1MB5|LINE|L1 -50198 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 315 chr1 71571032 71571164 + 3 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 265914 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 459-23 chr5 7764659 7764954 + 3 NA intron (NM_020546, intron 16 of 24) Plat_L3|LINE|CR1 86327 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 521-23 chr9 86346149 86346344 + 3 NA intron (NM_001185059, intron 3 of 26) intron (NM_001185059, intron 3 of 26) 8164 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 606-8 chr5 62503342 62503654 + 3 NA intron (NM_016338, intron 16 of 29) L2a|LINE|L2 -75237 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 473-8 chr14 75149187 75149379 + 3 NA intron (NM_006827, intron 2 of 4) MSTD|LTR|ERVL-MaLR -22235 NM_033116 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 480-10 chr14 62514049 62514408 + 3 NA Intergenic L1M3|LINE|L1 -374255 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 682.5 chr10 39052101 39052454 + 3 NA Intergenic ALR/Alpha|Satellite|centr 355681 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 490-23 chr4 33505333 33505695 + 3 NA Intergenic MER57A-int|LTR|ERV1 534379 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 849 chr1 41174506 41174999 + 3 NA intron (NM_001172218, intron 2 of 15) ERVL-int|LTR|ERVL -11735 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 459-27 chr6 51460339 51460559 + 3 NA Intergenic Intergenic -161421 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 487-19 chr16 23709768 23710028 + 3 NA intron (NM_001308220, intron 4 of 20) MLT1H|LTR|ERVL-MaLR 3324 NM_033266 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 445.5-4 chr15 47527685 47527965 + 3 NA intron (NM_001198999, intron 3 of 19) UCON97|DNA|DNA -189680 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 727.5-3 chr18 56991892 56992151 + 3 NA intron (NM_015285, intron 26 of 27) intron (NM_015285, intron 26 of 27) 80098 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 540-3 chr10 54236306 54236576 + 3 NA intron (NM_001354411, intron 9 of 34) intron (NM_001354411, intron 9 of 34) -249789 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 277-52 chrX 34209013 34209120 + 3 NA Intergenic L1MC4a|LINE|L1 -76736 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 234-28 chr9 35241370 35241512 + 3 NA intron (NM_006377, intron 5 of 38) L1ME4b|LINE|L1 79432 NM_001371186 526-18 chr6 166352558 166352856 + 3 NA Intergenic MER94|DNA|hAT-Blackjack 10076 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 434-6 chr16 57479443 57479679 + 3 NA 5' UTR (NM_001369621, exon 1 of 8) 5' UTR (NM_001369621, exon 1 of 8) 196 NM_001330556 55715 Hs.279832 NM_018110 ENSG00000125170 DOK4 IRS-5|IRS5 docking protein 4 protein-coding 518.5-21 chr8 66564333 66564644 + 3 NA 3' UTR (NM_001080416, exon 16 of 16) 3' UTR (NM_001080416, exon 16 of 16) 48730 NM_001144755 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 410-9 chr16 49798670 49798886 + 3 NA intron (NM_001271620, intron 1 of 7) MamRep137|DNA|TcMar-Tigger 23960 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 388.5-2 chr16 66004957 66005099 + 3 NA Intergenic Intergenic -361663 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 212.5-4 chr10 10059594 10059735 + 3 NA intron (NR_120636, intron 2 of 3) intron (NR_120636, intron 2 of 3) 942 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 413.5-2 chr10 6600403 6600632 + 3 NA Intergenic MER117|DNA|hAT-Charlie -18199 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 693-14 chr7 46231901 46232295 + 3 NA Intergenic L1MCa|LINE|L1 -310826 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 759-3 chr18 11201542 11201876 + 3 NA Intergenic AluSq2|SINE|Alu -52947 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 417-35 chr6 15920598 15920806 + 3 NA Intergenic Charlie18a|DNA|hAT-Charlie -208384 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 360.5-10 chr2 80205526 80205856 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 99061 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 301.5-6 chr18 11015512 11015698 + 3 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 133157 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 234-22 chr5 154019105 154019198 + 3 NA intron (NM_001317993, intron 9 of 14) L1PB1|LINE|L1 19759 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 566-8 chr2 48943201 48943454 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -116276 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 270-5 chr11 22283216 22283372 + 3 NA TTS (NM_213599) TTS (NM_213599) -55087 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 530-17 chr4 13502244 13502511 + 3 NA Intergenic Intergenic -18012 NM_001159601 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 1054-3 chr5 128037067 128037701 + 3 NA intron (NR_152812, intron 4 of 4) intron (NR_152812, intron 4 of 4) 45791 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 618-12 chr20 2212439 2212713 + 3 NA intron (NR_161305, intron 1 of 1) intron (NR_161305, intron 1 of 1) 5648 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 421-13 chr19 5764803 5765053 + 3 NA intron (NM_152784, intron 16 of 21) AluJb|SINE|Alu 19818 NM_001134316 163154 Hs.631838 NM_153359 ENSG00000212123 PRR22 - proline rich 22 protein-coding 764.5 chr5 83745257 83745819 + 3 NA Intergenic L1M4|LINE|L1 -24683 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 726-2 chr12 65648683 65649038 + 3 NA Intergenic Intergenic -6488 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 357.5-20 chr8 140762343 140762546 + 3 NA intron (NR_148037, intron 17 of 34) intron (NR_148037, intron 17 of 34) -29791 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 612-9 chr3 22840258 22840520 + 3 NA Intergenic L1MC|LINE|L1 362189 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 315-34 chr7 10422177 10422360 + 3 NA Intergenic Intergenic -280408 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 356 chr1 96120377 96120500 + 3 NA Intergenic L1MEd|LINE|L1 128370 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 617-5 chr4 168734734 168735106 + 3 NA intron (NM_001166108, intron 10 of 21) AluJo|SINE|Alu -97175 NM_001367567 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 604.5-11 chr5 35618264 35618539 + 3 NA intron (NM_144722, intron 1 of 9) intron (NM_144722, intron 1 of 9) 538 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 528-29 chr5 102416127 102416512 + 3 NA intron (NM_001308014, intron 3 of 8) L1PB4|LINE|L1 82682 NM_001289002 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 814.5-3 chr12 124342553 124343017 + 3 NA intron (NM_001077261, intron 34 of 47) intron (NM_001077261, intron 34 of 47) -5543 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 889.5-3 chr9 89323358 89323847 + 3 NA intron (NM_001282689, intron 2 of 16) intron (NM_001282689, intron 2 of 16) 4751 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 354.5-24 chr22 37088783 37088921 + 3 NA intron (NM_153609, intron 7 of 17) MIR3|SINE|MIR 14801 NM_153609 164656 Hs.370885 NM_153609 ENSG00000187045 TMPRSS6 IRIDA transmembrane serine protease 6 protein-coding 331-9 chr10 84619357 84619573 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 194296 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 406.5-11 chr17 63716782 63717039 + 3 NA intron (NM_153335, intron 2 of 8) MIRb|SINE|MIR 16572 NR_046273 729683 Hs.534931 NR_046273 LOC729683 - uncharacterized LOC729683 ncRNA 402-7 chr10 125844405 125844691 + 3 NA intron (NM_018180, intron 6 of 10) intron (NM_018180, intron 6 of 10) 21002 NM_078468 56647 Hs.370292 NM_016567 ENSG00000107949 BCCIP TOK-1|TOK1 BRCA2 and CDKN1A interacting protein protein-coding 421.5-6 chr11 78389063 78389301 + 3 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 28638 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 498-26 chr7 93455652 93455884 + 3 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 27087 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 429-10 chr14 66903515 66903712 + 3 NA intron (NM_001024218, intron 5 of 21) L1MA4|LINE|L1 -285827 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 478-14 chr2 42349392 42349694 + 3 NA TTS (NR_134948) TTS (NR_134948) 10495 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 550-19 chr5 20331567 20331941 + 3 NA non-coding (NR_146519, exon 2 of 2) non-coding (NR_146519, exon 2 of 2) 26203 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 321-2 chr1 105689829 105690027 + 3 NA Intergenic Intergenic -70993 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 404-9 chr10 62613220 62613443 + 3 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 92883 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 698-5 chr13 77826845 77827184 + 3 NA intron (NR_103853, intron 1 of 6) AluJr|SINE|Alu 8077 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 490-30 chr5 166346881 166347059 + 3 NA Intergenic Intergenic 579400 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 433.5-15 chr2 24702786 24702965 + 3 NA intron (NM_001362950, intron 11 of 23) intron (NM_001362950, intron 11 of 23) -90240 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 659-8 chr2 189842680 189842944 + 3 NA intron (NR_110332, intron 6 of 12) LTR56|LTR|ERV1 58362 NM_001128144 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 711-6 chr8 122481060 122481481 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 87374 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 497-13 chr5 60703376 60703584 + 3 NA Intergenic L2a|LINE|L2 -3314 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 372-5 chr1 187222024 187222240 + 3 NA intron (NR_126347, intron 1 of 3) L1MA1|LINE|L1 129290 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 244-20 chr3 175252502 175252619 + 3 NA intron (NR_046713, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 18536 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 426-8 chr12 55880866 55881263 + 3 NA Intergenic L1M4c|LINE|L1 -38128 NM_001272101 4327 Hs.591033 NM_002429 ENSG00000123342 MMP19 CODA|MMP18|RASI-1 matrix metallopeptidase 19 protein-coding 699-2 chr11 36631393 36631816 + 3 NA intron (NM_001276725, intron 2 of 3) intron (NM_001276725, intron 2 of 3) -33325 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 333-21 chr22 28148133 28148340 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -227624 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 586 chr10 17094162 17094581 + 3 NA intron (NM_001081, intron 14 of 66) L1MEg|LINE|L1 35446 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 529-11 chr2 133051858 133052127 + 3 NA intron (NM_207481, intron 6 of 17) L2b|LINE|L2 136435 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 815.5-3 chr8 79164918 79165456 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB -167001 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 564.5-13 chr8 117203055 117203264 + 3 NA Intergenic L2b|LINE|L2 68164 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 299.5-28 chr4 91365376 91365579 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 911825 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 544-7 chr18 2356617 2356834 + 3 NA Intergenic Intergenic 214780 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 626-10 chr2 50968572 50968797 + 3 NA intron (NM_004801, intron 2 of 21) L2a|LINE|L2 63448 NM_001330078 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 643 chr1 83913372 83913705 + 3 NA intron (NM_001350215, intron 13 of 19) intron (NM_001350215, intron 13 of 19) -52542 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 427-32 chr8 106514513 106514878 + 3 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 66771 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 378-30 chr7 109400227 109400592 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -515822 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 553.5-8 chr17 64624161 64624346 + 3 NA intron (NM_022739, intron 1 of 18) AluJb|SINE|Alu 38054 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 477-28 chr9 102893126 102893312 + 3 NA Intergenic Intergenic -102114 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 796-2 chr14 75969027 75969431 + 3 NA intron (NM_001329938, intron 3 of 4) intron (NM_001329938, intron 3 of 4) 12766 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 568.5-8 chr3 15277587 15277916 + 3 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 23567 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 575-8 chr3 127287635 127287964 + 3 NA intron (NM_001362810, intron 1 of 2) intron (NM_001362810, intron 1 of 2) 247 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 546.5-13 chr9 130827274 130827628 + 3 NA intron (NM_007313, intron 1 of 10) HAL1|LINE|L1 -7803 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 399-25 chr3 30217614 30217800 + 3 NA Intergenic L2c|LINE|L2 -283551 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 520-5 chr11 77343443 77343710 + 3 NA intron (NM_001128620, intron 10 of 15) intron (NM_001128620, intron 10 of 15) -41910 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 444-30 chr8 42707273 42707458 + 3 NA intron (NM_001347717, intron 2 of 6) intron (NM_001347717, intron 2 of 6) 9989 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 414-16 chr2 65775335 65775506 + 3 NA Intergenic Intergenic -342821 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 386-23 chr3 80988623 80988764 + 3 NA Intergenic L1PREC2|LINE|L1 -5175 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 949 chr8 126736800 126737232 + 3 NA Intergenic Intergenic -178538 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 514-13 chr3 15940247 15940799 + 3 NA Intergenic L2b|LINE|L2 66752 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 594.5 chr1 74656600 74657160 + 3 NA intron (NM_001002912, intron 1 of 14) intron (NM_001002912, intron 1 of 14) 16912 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 324-16 chr17 32286737 32286992 + 3 NA intron (NM_001363835, intron 3 of 7) MER91A|DNA|hAT-Tip100 20688 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 713-2 chr2 204312580 204313161 + 3 NA Intergenic MIRc|SINE|MIR -232605 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 457.5-5 chr11 8508402 8508647 + 3 NA intron (NM_001352388, intron 1 of 14) AluJo|SINE|Alu 85452 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 846-2 chr10 86190252 86190743 + 3 NA intron (NM_017551, intron 3 of 15) intron (NM_017551, intron 3 of 15) 74291 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 541-10 chr20 46969672 46969958 + 3 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 74972 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 521.5-3 chr15 92178268 92178780 + 3 NA Intergenic Intergenic -215357 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 622-15 chr9 30832384 30832603 + 3 NA Intergenic Intergenic -424039 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 402-18 chr2 34446158 34446538 + 3 NA Intergenic Intergenic -231209 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 282-24 chr8 10217666 10217807 + 3 NA intron (NM_001135670, intron 2 of 4) L1MC5|LINE|L1 122085 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 715.5 chr1 8221161 8221528 + 3 NA Intergenic AluJo|SINE|Alu 12672 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 338.5-32 chr7 28111377 28111556 + 3 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -68991 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 807.5 chr10 33387688 33388094 + 3 NA Intergenic AluJr|SINE|Alu -52986 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 216-16 chr20 19219015 19219103 + 3 NA intron (NM_020689, intron 1 of 16) intron (NM_020689, intron 1 of 16) 6417 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 961-4 chr6 44388329 44388848 + 3 NA intron (NM_001253, intron 1 of 15) intron (NM_001253, intron 1 of 15) 882 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 546-12 chr4 175478322 175478758 + 3 NA Intergenic Intergenic 309136 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 778.5-5 chr5 147224259 147224640 + 3 NA intron (NR_147191, intron 1 of 2) intron (NR_147191, intron 1 of 2) 10410 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 419-5 chr10 54163551 54163816 + 3 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -322547 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 639-7 chr2 76163521 76163878 + 3 NA Intergenic L1ME3A|LINE|L1 -452784 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 633-13 chrX 75369782 75370052 + 3 NA 3' UTR (NM_144969, exon 12 of 12) 3' UTR (NM_144969, exon 12 of 12) 95832 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 409-24 chr5 44226648 44226839 + 3 NA Intergenic Intergenic -161989 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 412.5-24 chr4 60477157 60477338 + 3 NA Intergenic Intergenic -445372 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 663 chr1 177411871 177412355 + 3 NA Intergenic Intergenic 60527 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 409-20 chr22 20645156 20645388 + 3 NA Intergenic Intergenic -44283 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 844.5-2 chr17 76292815 76293266 + 3 NA exon (NM_032134, exon 4 of 19) exon (NM_032134, exon 4 of 19) 14640 NM_032134 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 703-4 chr9 107059588 107059879 + 3 NA intron (NR_126029, intron 4 of 4) intron (NR_126029, intron 4 of 4) 43255 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 487-15 chr14 90197332 90197590 + 3 NA Intergenic AluJr|SINE|Alu -59092 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 405-5 chr11 32721087 32721484 + 3 NA intron (NM_001008391, intron 2 of 17) AluSx|SINE|Alu 73373 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 865.5 chr1 194292026 194292444 + 3 NA Intergenic Intergenic 987490 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 616.5-7 chr14 74457523 74457852 + 3 NA Intergenic Intergenic 22517 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 558-16 chr4 46921009 46921265 + 3 NA 3' UTR (NM_001204266, exon 9 of 9) 3' UTR (NM_001204266, exon 9 of 9) -11892 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 387.5 chr10 125595997 125596159 + 3 NA intron (NM_001318133, intron 3 of 3) L1M5|LINE|L1 21707 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 411.5 chr1 205178500 205178767 + 3 NA intron (NM_199462, intron 2 of 11) intron (NM_199462, intron 2 of 11) 33069 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 765-10 chr9 92320705 92321068 + 3 NA intron (NM_001256394, intron 5 of 17) AluSq2|SINE|Alu 4464 NM_017948 55035 Hs.442199 NM_017948 ENSG00000198000 NOL8 C9orf34|NOP132|bA62C3.3|bA62C3.4 nucleolar protein 8 protein-coding 748-12 chr6 83426451 83426840 + 3 NA intron (NM_002395, intron 1 of 13) intron (NM_002395, intron 1 of 13) 4406 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 464-16 chr20 14091540 14091856 + 3 NA intron (NM_001351663, intron 3 of 17) L1MD2|LINE|L1 96182 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 241-7 chr14 45524134 45524274 + 3 NA Intergenic L1MA9|LINE|L1 191398 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 826.5 chr13 63568941 63569398 + 3 NA Intergenic Intergenic -168266 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 648-13 chr6 65410092 65410386 + 3 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 108821 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 361-33 chr9 32080232 32080352 + 3 NA Intergenic Intergenic -304311 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 478.5-3 chr11 90351865 90352251 + 3 NA intron (NR_104190, intron 1 of 6) MER1B|DNA|hAT-Charlie 100826 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 396-15 chr2 13169948 13170169 + 3 NA Intergenic Intergenic -163045 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 415.5-18 chr7 79220442 79220757 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 211611 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 405.5-15 chr3 188298177 188298442 + 3 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 72904 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 580-7 chr18 2456894 2457278 + 3 NA Intergenic L1MA3|LINE|L1 114419 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 438-19 chr2 107707387 107707822 + 3 NA Intergenic Intergenic -46508 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 354-24 chr4 18393819 18393958 + 3 NA Intergenic MIRb|SINE|MIR -372013 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 426-43 chr8 106410541 106410739 + 3 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -37284 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 394-16 chr20 52739458 52739679 + 3 NA Intergenic L2a|LINE|L2 118730 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 229.5-30 chr4 41780009 41780126 + 3 NA Intergenic Intergenic -31097 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 437-28 chr2 106363582 106363840 + 3 NA Intergenic Intergenic -6034 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 892-2 chr15 89213603 89214108 + 3 NA intron (NM_000326, intron 6 of 8) L1M4|LINE|L1 7724 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 453.5-9 chr2 207417998 207418411 + 3 NA Intergenic Intergenic -111758 NM_001320793 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 451.5-16 chr20 54323677 54323932 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 115717 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 547.5-5 chr20 48287868 48288145 + 3 NA Intergenic L2a|LINE|L2 -71905 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 678-8 chrX 67281579 67281898 + 3 NA Intergenic L1PA13|LINE|L1 -262283 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 983 chr12 57472292 57472698 + 3 NA TTS (NM_001167609) TTS (NM_001167609) 5372 NM_001319852 64333 Hs.437126 NM_032496 ENSG00000123329 ARHGAP9 10C|RGL1 Rho GTPase activating protein 9 protein-coding 588-7 chr11 43645330 43645566 + 3 NA Intergenic Intergenic -35290 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 856.5-4 chr6 137514241 137514680 + 3 NA Intergenic Intergenic -20066 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 441.5-5 chr11 75939521 75939928 + 3 NA intron (NM_003369, intron 6 of 14) intron (NM_003369, intron 6 of 14) 124514 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 648-11 chr5 14719928 14720254 + 3 NA intron (NM_054027, intron 8 of 11) intron (NM_054027, intron 8 of 11) 7397 NR_046285 100130744 Hs.660550 NR_046285 LOC100130744 - uncharacterized LOC100130744 ncRNA 683-2 chr5 66342265 66342586 + 3 NA Intergenic Intergenic -132979 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 391.5-20 chr2 154688236 154688514 + 3 NA Intergenic Intergenic -10206 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 423-39 chr8 103534333 103534511 + 3 NA intron (NM_001348497, intron 1 of 22) Cheshire|DNA|hAT-Charlie -32512 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 461-7 chr18 2820136 2820449 + 3 NA Intergenic Tigger5b|DNA|TcMar-Tigger -26714 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 485.5-12 chr4 30322477 30322752 + 3 NA Intergenic L1ME2z|LINE|L1 -397755 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 568-9 chr3 80104139 80104484 + 3 NA Intergenic LTR16E1|LTR|ERVL -336313 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 781.5-5 chr2 178100177 178100574 + 3 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 7964 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 635-12 chr9 104895964 104896210 + 3 NA intron (NM_005502, intron 2 of 49) L1MD|LINE|L1 32068 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 525.5-10 chr3 108184071 108184333 + 3 NA intron (NM_018010, intron 6 of 10) intron (NM_018010, intron 6 of 10) 38222 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 365-37 chr8 132073204 132073454 + 3 NA intron (NM_001145095, intron 13 of 15) intron (NM_001145095, intron 13 of 15) -13947 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 537-7 chr14 28329797 28330007 + 3 NA Intergenic L2c|LINE|L2 435417 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 380.5-7 chr12 58830317 58830497 + 3 NA Intergenic L1ME1|LINE|L1 -48691 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 628-8 chr2 13366155 13366550 + 3 NA Intergenic L1MA2|LINE|L1 -359339 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 624-5 chr21 32079800 32080202 + 3 NA TTS (NR_038033) TTS (NR_038033) 6294 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 745-7 chr18 61041890 61042223 + 3 NA Intergenic L1MB8|LINE|L1 -291374 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 832-2 chr17 67714406 67714863 + 3 NA Intergenic Intergenic -3199 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 328.5-11 chr13 72415517 72415672 + 3 NA Intergenic Intergenic 312035 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 738-3 chr18 5891613 5892141 + 3 NA exon (NM_001080209, exon 3 of 3) exon (NM_001080209, exon 3 of 3) 4077 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 397-11 chr14 68536571 68536874 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 92065 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 449.5-5 chr12 85392312 85392627 + 3 NA Intergenic Intergenic 112249 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 454-22 chr5 27115811 27116086 + 3 NA Intergenic AluJo|SINE|Alu -77362 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 461.5-10 chr2 155887179 155887705 + 3 NA Intergenic L1MA4A|LINE|L1 367489 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 393-27 chr4 59902181 59902516 + 3 NA Intergenic L1PA10|LINE|L1 888775 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 415-11 chr12 12509882 12510130 + 3 NA intron (NM_030640, intron 3 of 6).2 intron (NM_030640, intron 3 of 6).2 52857 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 838-2 chr1 113687215 113687624 + 3 NA Intergenic Intergenic 71736 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 965-3 chr4 65012064 65012556 + 3 NA Intergenic Intergenic -7810 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 417-7 chr10 93855444 93855632 + 3 NA Intergenic MER89|LTR|ERV1 -38440 NR_144336 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 709.5 chr12 126695634 126695906 + 3 NA Intergenic LTR33|LTR|ERVL -5452 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 472-4 chr14 78670647 78671110 + 3 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 267159 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 428-4 chr10 33724584 33724814 + 3 NA Intergenic MamRep605|LTR?|LTR? 47981 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 273-20 chr2 159258322 159258462 + 3 NA intron (NM_001330279, intron 5 of 9) AluSz|SINE|Alu 28311 NM_001330277 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 790-2 chr11 41193971 41194340 + 3 NA intron (NM_001258419, intron 1 of 6) Tigger2|DNA|TcMar-Tigger 265481 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 573.5 chr1 163276944 163277225 + 3 NA intron (NM_001254748, intron 2 of 5) MER4B|LTR|ERV1 44707 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 502.5-13 chr5 82229888 82230134 + 3 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 48343 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 724-7 chr2 89779904 89780279 + 3 NA Intergenic Intergenic -142184 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 562.5 chr1 118662650 118662956 + 3 NA Intergenic L1MEf|LINE|L1 325540 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 673.5-7 chr7 3113560 3113947 + 3 NA Intergenic LTR16A2|LTR|ERVL 44820 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 344-34 chr8 140109287 140109469 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -8843 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 527.5-11 chr6 61989469 61989665 + 3 NA intron (NR_146874, intron 3 of 13) MER67C|LTR|ERV1 296658 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 913-7 chr9 96164253 96164704 + 3 NA Intergenic Intergenic -48067 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 462-17 chr16 57031230 57031473 + 3 NA intron (NM_001330552, intron 10 of 47) intron (NM_001330552, intron 10 of 47) 14277 NM_032206 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 522-16 chr18 356052 356258 + 3 NA intron (NM_130386, intron 3 of 9) intron (NM_130386, intron 3 of 9) -88108 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 760.5-2 chr12 109589685 109590047 + 3 NA intron (NM_000431, intron 7 of 10) intron (NM_000431, intron 7 of 10) 16072 NM_001301182 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 522-10 chr12 114820171 114820455 + 3 NA Intergenic Intergenic -136138 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 835-4 chr6 19054480 19054896 + 3 NA Intergenic L1PA15|LINE|L1 125792 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 510-5 chr11 14695312 14695507 + 3 NA intron (NM_000922, intron 1 of 15) L1ME3|LINE|L1 51605 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 256-13 chr2 28394972 28395096 + 3 NA promoter-TSS (NR_103831) promoter-TSS (NR_103831) -362 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 383-5 chr10 59101885 59102118 + 3 NA Intergenic Intergenic 74463 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 567-22 chr9 86213300 86213714 + 3 NA Intergenic Intergenic 42526 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 459-17 chr20 34185772 34186015 + 3 NA Intergenic MIRb|SINE|MIR -73650 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 721.5-6 chr4 61530136 61530561 + 3 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 328176 NM_001371342 497-12 chr4 143052413 143052692 + 3 NA Intergenic Intergenic 132309 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 513-27 chr6 141533024 141533228 + 3 NA Intergenic Intergenic 555673 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 691.5-4 chr2 46883422 46883685 + 3 NA Intergenic Intergenic 32253 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 419-30 chr8 86700983 86701185 + 3 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 42591 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 285-14 chr14 45557753 45557902 + 3 NA Intergenic Intergenic 157775 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 888-7 chr7 9905880 9906257 + 3 NA Intergenic Intergenic 271798 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 506-7 chr12 87059806 87060087 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -220946 NM_001351286 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 1037-2 chr8 130974102 130974633 + 3 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 66542 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 423-18 chr18 22923618 22923931 + 3 NA Intergenic Intergenic -9554 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 708-2 chr16 20028917 20029350 + 3 NA Intergenic Intergenic 44645 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 570-21 chr7 3833517 3833858 + 3 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -295998 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 246.5-28 chr3 134994022 134994169 + 3 NA intron (NM_004441, intron 3 of 15) L2c|LINE|L2 198835 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 568-14 chr5 28099095 28099419 + 3 NA Intergenic Intergenic 188408 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 406.5-28 chr8 89784531 89784792 + 3 NA intron (NM_003821, intron 8 of 10) Tigger4b|DNA|TcMar-Tigger 26845 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 517.5-16 chr6 167958081 167958365 + 3 NA intron (NM_001040000, intron 29 of 29) Tigger4b|DNA|TcMar-Tigger 18716 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 517-11 chr4 106911912 106912172 + 3 NA Intergenic Intergenic 124271 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 423-34 chr6 162428143 162428347 + 3 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -298887 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 329-23 chr3 163707156 163707346 + 3 NA Intergenic L1MB7|LINE|L1 -403950 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 529.5-5 chr11 72557375 72557819 + 3 NA Intergenic Intergenic -13059 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 696-14 chr6 12804162 12804639 + 3 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 85701 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 720-6 chr4 31816055 31816359 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -181172 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 457-25 chr6 48350112 48350434 + 3 NA Intergenic MADE2|DNA|TcMar-Mariner -281584 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 271.5-9 chr11 47102809 47102958 + 3 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 73996 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 527-11 chr16 5628896 5629173 + 3 NA Intergenic Intergenic -3433 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 664-2 chr12 44196504 44196747 + 3 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 360544 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 725-6 chr4 106541995 106542298 + 3 NA Intergenic L1ME3|LINE|L1 108522 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 611-7 chr2 106003816 106004096 + 3 NA Intergenic L1MB8|LINE|L1 -61732 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 446-5 chr1 181770592 181770774 + 3 NA intron (NM_001205293, intron 35 of 47) intron (NM_001205293, intron 35 of 47) 287166 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 576-16 chr5 124447799 124448122 + 3 NA Intergenic Intergenic -9440 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 412-25 chr4 44656675 44656856 + 3 NA Intergenic Intergenic -5124 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 389.5-27 chr5 45768920 45769168 + 3 NA Intergenic Intergenic -72664 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 571-9 chr2 103648791 103649136 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -664534 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 337-9 chr14 73883861 73884242 + 3 NA intron (NM_001371328, intron 8 of 8) intron (NM_001371328, intron 8 of 8) -2808 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 393-39 chr9 74362274 74362515 + 3 NA Intergenic Intergenic -9137 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 365-15 chr2 172707658 172707895 + 3 NA Intergenic LTR106_Mam|LTR|LTR -28069 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 693-12 chr6 91896102 91896436 + 3 NA Intergenic Intergenic -205841 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 547-15 chr4 89350421 89350780 + 3 NA Intergenic Intergenic -42800 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 608.5-4 chr15 65717364 65717645 + 3 NA intron (NM_005848, intron 13 of 31) Charlie17a|DNA|hAT-Charlie 1828 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 486-11 chr13 65374456 65374746 + 3 NA Intergenic Intergenic -491446 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 342-32 chr6 54997579 54997817 + 3 NA Intergenic Intergenic -108762 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 486-13 chr14 74635323 74635534 + 3 NA Intergenic Intergenic -23191 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 811-2 chr20 9645098 9645543 + 3 NA intron (NM_020341, intron 3 of 10) intron (NM_020341, intron 3 of 10) -130322 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 330-43 chr8 80115889 80116112 + 3 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -35169 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 511.5-22 chr7 113199944 113200186 + 3 NA Intergenic Intergenic -81483 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 349-19 chr18 7691487 7691665 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 124260 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 297-25 chr4 11052666 11052765 + 3 NA Intergenic Intergenic -316112 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 487.5-26 chr5 130432255 130432492 + 3 NA Intergenic Charlie6|DNA|hAT-Charlie 527908 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 468-28 chr4 87423256 87423432 + 3 NA intron (NM_024047, intron 1 of 7) intron (NM_024047, intron 1 of 7) 747 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 348.5-21 chr5 19612552 19612705 + 3 NA intron (NM_001349559, intron 5 of 12) intron (NM_001349559, intron 5 of 12) 273644 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 370-12 chr17 3197291 3197478 + 3 NA promoter-TSS (NM_012352) promoter-TSS (NM_012352) -133 NM_012352 26189 Hs.532660 NM_012352 ENSG00000172150 OR1A2 OR17-6 olfactory receptor family 1 subfamily A member 2 protein-coding 433.5-29 chr8 108195532 108195755 + 3 NA Intergenic Intergenic 53074 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 283.5-9 chr12 5899290 5899439 + 3 NA intron (NM_001278596, intron 3 of 25) MIR|SINE|MIR 45895 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 382-39 chr6 68211292 68211507 + 3 NA Intergenic Intergenic 118500 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 606-13 chr9 99281486 99281697 + 3 NA Intergenic AluJr4|SINE|Alu 59309 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 811-4 chr8 80757676 80758104 + 3 NA intron (NM_001033723, intron 2 of 8) Tigger3b|DNA|TcMar-Tigger 116578 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 492-26 chr4 141870515 141870900 + 3 NA Intergenic L1MEh|LINE|L1 234124 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 541-20 chr8 89487392 89487588 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 270221 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 396-19 chr20 32310277 32310480 + 3 NA exon (NM_004798, exon 2 of 9) exon (NM_004798, exon 2 of 9) 32727 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 725-7 chr4 133797255 133797562 + 3 NA Intergenic Intergenic 404381 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 376.5-23 chr5 69183595 69183843 + 3 NA Intergenic AluJb|SINE|Alu -5864 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 627.5-11 chr7 20543098 20543319 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -72459 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 812-7 chr7 46310365 46310876 + 3 NA Intergenic Intergenic 386502 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 679-14 chr6 24650684 24650988 + 3 NA exon (NM_016614, exon 7 of 7) exon (NM_016614, exon 7 of 7) -4645 NM_001168375 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 653-14 chr9 86711529 86711983 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 235750 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 319.5-12 chr18 9488480 9488625 + 3 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 13039 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 506.5-8 chr20 20162303 20162670 + 3 NA intron (NM_015585, intron 10 of 26) intron (NM_015585, intron 10 of 26) 105840 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 926 chr13 65842412 65842834 + 3 NA Intergenic Intergenic -23424 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 1169 chr2 116143235 116143846 + 3 NA Intergenic Intergenic 799725 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 790-6 chr3 1544927 1545284 + 3 NA Intergenic Intergenic 452081 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 344-22 chr2 44238233 44238396 + 3 NA Intergenic (TAATATT)n|Simple_repeat|Simple_repeat -37166 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 402-14 chr14 59537167 59537409 + 3 NA intron (NM_001164399, intron 13 of 19) intron (NM_001164399, intron 13 of 19) 39524 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 345-9 chr12 83982332 83982546 + 3 NA Intergenic Intergenic 930360 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 502.5-17 chrX 85954407 85954637 + 3 NA intron (NM_001320959, intron 8 of 14) L1MA2|LINE|L1 -50815 NR_029848 494323 NR_029848 ENSG00000199051 MIR361 MIRN361|hsa-mir-361|mir-361 microRNA 361 ncRNA 807-13 chr8 120606374 120606772 + 3 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -154680 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 484-14 chr12 27644960 27645185 + 3 NA intron (NM_003622, intron 4 of 29) intron (NM_003622, intron 4 of 29) -51375 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 656-9 chr4 176209284 176209735 + 3 NA Intergenic Intergenic -13924 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 459-31 chr7 35753151 35753355 + 3 NA Intergenic LTR16C|LTR|ERVL 36816 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 241.5-5 chr10 61595774 61595920 + 3 NA Intergenic Intergenic -67082 NM_001366906 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 925-2 chr7 111146518 111147136 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 55700 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 426-13 chr15 36972897 36973096 + 3 NA promoter-TSS (NR_107030) promoter-TSS (NR_107030) -95 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 447-30 chr8 139177241 139177496 + 3 NA Intergenic LTR38A1|LTR|ERV1 -263327 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 479-10 chr2 30546669 30547015 + 3 NA intron (NM_182551, intron 4 of 6) intron (NM_182551, intron 4 of 6) 99596 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 282-20 chr3 174296196 174296302 + 3 NA Intergenic Intergenic -375453 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 850-5 chr2 23134495 23134843 + 3 NA Intergenic Intergenic -250510 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 704.5 chr1 43066159 43066413 + 3 NA Intergenic MIRb|SINE|MIR -81618 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 426-15 chr16 64174666 64174898 + 3 NA Intergenic Intergenic 947281 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 466.5-12 chr18 13719536 13719751 + 3 NA intron (NM_001098801, intron 1 of 4) intron (NM_001098801, intron 1 of 4) 6915 NM_152352 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 503.5-13 chr5 56244959 56245306 + 3 NA Intergenic Intergenic -11802 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 472-13 chr3 139531587 139531845 + 3 NA intron (NM_001130992, intron 2 of 2) intron (NM_001130992, intron 2 of 2) 7920 NM_001365940 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 832-7 chr7 48489900 48490233 + 3 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 318608 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 513-23 chr4 130675420 130675620 + 3 NA Intergenic Intergenic 299159 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 665-7 chr3 84062197 84062724 + 3 NA Intergenic L1ME3A|LINE|L1 807115 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 570-6 chr12 46438987 46439306 + 3 NA intron (NR_125381, intron 2 of 2) L2c|LINE|L2 55039 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 349-28 chr4 116313526 116313669 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 13872 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 355-41 chr7 87886651 87886835 + 3 NA intron (NM_001318061, intron 3 of 11) intron (NM_001318061, intron 3 of 11) 10250 NM_006716 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 444-16 chr2 116265684 116265924 + 3 NA Intergenic Intergenic 921989 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 508-24 chr4 103431062 103431290 + 3 NA intron (NR_125925, intron 1 of 3) intron (NR_125925, intron 1 of 3) 6134 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 304.5-34 chr5 15152011 15152141 + 3 NA Intergenic Intergenic 114484 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 549-4 chr10 62632963 62633192 + 3 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 112629 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 321-25 chr6 166079826 166079980 + 3 NA Intergenic Intergenic -17817 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 552.5 chr1 175784489 175784783 + 3 NA Intergenic Intergenic -41041 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 293.5-19 chr2 99434435 99434561 + 3 NA intron (NR_135652, intron 7 of 21) intron (NR_135652, intron 7 of 21) 55519 NR_135652 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 293-24 chr5 141049094 141049215 + 3 NA intron (NR_105056, intron 3 of 3) intron (NR_105056, intron 3 of 3) -2222 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 822-8 chr6 61818214 61818817 + 3 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 244385 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 570 chr1 52829618 52829875 + 3 NA Intergenic AluSx3|SINE|Alu -13014 NM_001004339 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 509.5-10 chr4 77077675 77077998 + 3 NA Intergenic L1MB7|LINE|L1 -1847 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 395-26 chr5 83608922 83609218 + 3 NA Intergenic Charlie18a|DNA|hAT-Charlie -46756 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 724.5-5 chr2 39076554 39076935 + 3 NA intron (NM_005633, intron 1 of 22) L1ME3D|LINE|L1 43719 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 463-18 chr22 33476416 33476686 + 3 NA intron (NM_133642, intron 6 of 14) MER4A|LTR|ERV1 -39882 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 869-4 chr3 155420891 155421213 + 3 NA Intergenic MER91C|DNA|hAT-Tip100 -64751 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 172-11 chr3 10647972 10648039 + 3 NA Intergenic Intergenic -21198 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 829.5-5 chr3 192721408 192721727 + 3 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 5974 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 1083-2 chr4 32959614 32960276 + 3 NA Intergenic Intergenic 608907 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 907-2 chr8 111606119 111606702 + 3 NA Intergenic Intergenic 229771 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 447-9 chr17 61700307 61700551 + 3 NA intron (NM_032043, intron 17 of 19) L1MB7|LINE|L1 -109210 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 539-5 chr13 110200561 110200822 + 3 NA intron (NM_001845, intron 20 of 51) intron (NM_001845, intron 20 of 51) 78989 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 568.5-11 chr8 125700282 125700766 + 3 NA Intergenic Intergenic 250673 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 543-8 chr3 158786268 158786467 + 3 NA Intergenic L1ME1|LINE|L1 -15687 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 720-5 chr20 39034119 39034430 + 3 NA non-coding (NR_033905, exon 21 of 22) non-coding (NR_033905, exon 21 of 22) 71930 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 766-6 chr18 74268197 74268553 + 3 NA intron (NM_001190807, intron 1 of 3) intron (NM_001190807, intron 1 of 3) 23588 NM_001190807 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5|METAG cytochrome b5 type A protein-coding 552.5-5 chr12 122222125 122222443 + 3 NA intron (NM_001278303, intron 1 of 4) L2a|LINE|L2 3487 NM_001278304 56616 Hs.169611 NM_019887 ENSG00000184047 DIABLO DFNA64|SMAC diablo IAP-binding mitochondrial protein protein-coding 814 chr16 75002896 75003286 + 3 NA intron (NM_032268, intron 1 of 4) AluSp|SINE|Alu 4067 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 458-11 chr14 62019036 62019226 + 3 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) 91436 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 504 chr1 189193337 189193608 + 3 NA Intergenic Intergenic 1282538 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 694-5 chr18 64432306 64432592 + 3 NA Intergenic Intergenic -172394 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 757.5-3 chr5 54651598 54651998 + 3 NA Intergenic Intergenic 51526 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 433.5-2 chr1 114721047 114721428 + 3 NA intron (NM_001007553, intron 16 of 19) MER58A|DNA|hAT-Charlie -4466 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 513.5-11 chr2 176601964 176602274 + 3 NA Intergenic Intergenic -1067 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 797-5 chr4 30131811 30132170 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -588379 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 393.5-9 chr15 48816200 48816360 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -5211 NM_001194998 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 761-2 chr10 65438954 65439223 + 3 NA Intergenic Intergenic -132337 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 281-29 chr4 32191997 32192100 + 3 NA Intergenic Intergenic -158990 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 634-11 chr7 30851502 30852024 + 3 NA intron (NR_037598, intron 12 of 19) MIRc|SINE|MIR -59931 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 459-19 chr21 29883024 29883361 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 56804 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 465-5 chr1 73403404 73403659 + 3 NA Intergenic L1ME1|LINE|L1 97361 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 356-27 chr20 50300479 50300673 + 3 NA intron (NR_034124, intron 2 of 4) (ATGG)n|Simple_repeat|Simple_repeat 7856 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 586-7 chr2 201975053 201975317 + 3 NA Intergenic MER58B|DNA|hAT-Charlie -59402 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 538.5-19 chr5 162908219 162908525 + 3 NA Intergenic Intergenic -529199 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 426-18 chr2 71265134 71265387 + 3 NA Intergenic (CTTC)n|Simple_repeat|Simple_repeat -38157 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 528-4 chr10 5077337 5077537 + 3 NA intron (NM_001253908, intron 1 of 8) intron (NM_001253908, intron 1 of 8) -16977 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 576-13 chr3 120119150 120119362 + 3 NA Intergenic Intergenic -24809 NM_001146156 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 445.5-19 chr5 18518501 18518718 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 711335 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 658-12 chr6 35261440 35261788 + 3 NA intron (NM_001292032, intron 1 of 12) intron (NM_001292032, intron 1 of 12) 1879 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 515.5-12 chr8 117332698 117333151 + 3 NA Intergenic Intergenic -187789 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 487-34 chr7 25528543 25528822 + 3 NA Intergenic LTR85a|LTR|Gypsy? 134458 NR_157822 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 962-3 chr22 43679604 43680111 + 3 NA intron (NM_198856, intron 10 of 29) L1MB7|LINE|L1 132448 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 742-5 chr6 37772490 37772997 + 3 NA Intergenic HAL1|LINE|L1 -46984 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 607-10 chr11 127649148 127649398 + 3 NA Intergenic Intergenic 378203 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 409-8 chr14 68599200 68599378 + 3 NA intron (NM_001321818, intron 10 of 10) MIR|SINE|MIR 29498 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 589.5-10 chr7 112034109 112034369 + 3 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 172160 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 639-6 chr2 66172492 66172862 + 3 NA Intergenic L2b|LINE|L2 185651 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 761.5-3 chr15 76344367 76344968 + 3 NA Intergenic Intergenic 7894 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 611-9 chr4 64627353 64627584 + 3 NA Intergenic Tigger17c|DNA|TcMar-Tigger -218008 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 660-20 chr9 136571380 136571835 + 3 NA Intergenic Intergenic 23765 NR_121577 101928483 Hs.170035 NR_121577 NALT1 LINC01573|MIR4674HG|NALT|TCONS_l2_00029132 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 ncRNA 418-32 chr8 138012628 138012808 + 3 NA intron (NR_161374, intron 2 of 7) L1MB5|LINE|L1 70827 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 286.5-27 chr6 48003995 48004121 + 3 NA intron (NM_207499, intron 2 of 2) L2a|LINE|L2 64631 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 373-30 chr3 87422541 87422761 + 3 NA Intergenic Intergenic -146067 NM_001122757 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 382.5-18 chr6 40242424 40242590 + 3 NA Intergenic L1MB4|LINE|L1 113499 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 366-14 chr22 19553223 19553513 + 3 NA Intergenic L1MB5|LINE|L1 13471 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 283-45 chr8 125769522 125769644 + 3 NA Intergenic MIR|SINE|MIR 181614 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 634 chr1 235665118 235665587 + 3 NA intron (NM_000081, intron 50 of 52) AluSx1|SINE|Alu -14598 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 639-8 chr2 127376740 127377155 + 3 NA Intergenic AluJr|SINE|Alu -33718 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 495-18 chr7 89304180 89304414 + 3 NA intron (NM_181646, intron 2 of 3) MER67D|LTR|ERV1 -508560 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 660-15 chr6 159146150 159146525 + 3 NA Intergenic Intergenic -23063 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 546-16 chr8 119370127 119370377 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger 45081 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 378.5-19 chr20 57296624 57296762 + 3 NA Intergenic Intergenic 24898 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 426-14 chr15 68413673 68413966 + 3 NA intron (NM_001004439, intron 1 of 29) Tigger19a|DNA|TcMar-Tigger 18344 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 663-9 chr4 138089775 138090206 + 3 NA intron (NR_038380, intron 1 of 6) intron (NR_038380, intron 1 of 6) 976 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 453.5-20 chr9 30839429 30839599 + 3 NA Intergenic L1MC1|LINE|L1 -431060 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 354.5-6 chr12 18996744 18997065 + 3 NA Intergenic Intergenic -132829 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 379.5-3 chr11 37172402 37172553 + 3 NA Intergenic AluJo|SINE|Alu -574198 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 406.5-27 chr8 82451164 82451371 + 3 NA Intergenic L1PA15|LINE|L1 -460837 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 497-3 chr10 14106295 14106575 + 3 NA intron (NR_134578, intron 2 of 3) L1MC5|LINE|L1 32151 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 677-13 chr6 122500102 122500338 + 3 NA intron (NM_001270393, intron 3 of 7) intron (NM_001270393, intron 3 of 7) 28303 NM_001270394 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 378-25 chr6 28130362 28130569 + 3 NA TTS (NM_001320557) TTS (NM_001320557) 5856 NM_001320556 80345 Hs.656641 NM_025231 ENSG00000196812 ZSCAN16 ZNF392|ZNF435|dJ265C24.3 zinc finger and SCAN domain containing 16 protein-coding 862-3 chr12 9013971 9014328 + 3 NA Intergenic L1MA3|LINE|L1 24524 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 778-2 chr14 64713278 64713622 + 3 NA intron (NM_001308147, intron 1 of 16) L1MEd|LINE|L1 9026 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 250.5-25 chr3 2261432 2261549 + 3 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 22661 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 690-8 chr2 180573184 180573489 + 3 NA Intergenic Intergenic -118768 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 747-3 chr4 44577484 44577871 + 3 NA Intergenic Intergenic 73964 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 814-2 chr20 54945850 54946257 + 3 NA Intergenic L1M4c|LINE|L1 470460 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 569-12 chr3 79339704 79340033 + 3 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -71859 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 486-44 chr9 123141305 123141625 + 3 NA intron (NR_033234, intron 13 of 18) intron (NR_033234, intron 13 of 18) -25988 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 503-20 chr4 17245945 17246243 + 3 NA Intergenic Intergenic -60037 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 306-22 chr4 67074527 67074668 + 3 NA Intergenic Intergenic 347403 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 592.5-13 chr4 62147689 62147929 + 3 NA intron (NR_110595, intron 2 of 7) intron (NR_110595, intron 2 of 7) 13956 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 540-26 chr9 78462774 78463000 + 3 NA Intergenic Intergenic 165762 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 517-3 chr10 61772030 61772208 + 3 NA Intergenic Intergenic 109158 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 387.5-7 chr14 61859656 61859903 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 47076 NM_001367657 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 411-32 chr5 118503341 118503520 + 3 NA intron (NR_104610, intron 4 of 9) AluSq2|SINE|Alu 58687 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 417.5-22 chr6 165647871 165648024 + 3 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 14153 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 304-7 chr12 80457027 80457221 + 3 NA intron (NM_001145026, intron 3 of 44) intron (NM_001145026, intron 3 of 44) 12889 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 577.5-11 chr15 37693676 37693879 + 3 NA Intergenic Intergenic -240830 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 565-10 chr3 156772573 156772812 + 3 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 39329 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 481.5-4 chr10 115014285 115014557 + 3 NA Intergenic MamGypLTR3a|LTR|Gypsy 19764 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 457-13 chr22 49378757 49379039 + 3 NA Intergenic Intergenic 164568 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 428-6 chr11 79098865 79099135 + 3 NA intron (NM_001098816, intron 4 of 33) MIRc|SINE|MIR 303109 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 472-5 chr16 68932476 68932688 + 3 NA intron (NM_024562, intron 14 of 17) AluSx1|SINE|Alu 89051 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 398-26 chr4 57971199 57971399 + 3 NA Intergenic Intergenic 545427 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 552-3 chr10 58694804 58695027 + 3 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -20100 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 492-3 chr10 62240464 62240787 + 3 NA intron (NM_001282941, intron 4 of 4) intron (NM_001282941, intron 4 of 4) 28219 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 441-23 chr20 61643898 61644111 + 3 NA intron (NM_001252339, intron 1 of 14) MER31B|LTR|ERV1 44243 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 693.5-5 chr5 31356471 31356996 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 163047 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 453.5-3 chr10 63882255 63882452 + 3 NA Intergenic Intergenic -360463 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 478.5-28 chr8 140919465 140919777 + 3 NA intron (NM_001352700, intron 1 of 34) intron (NM_001352700, intron 1 of 34) 81383 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 352.5-24 chr4 128627599 128627888 + 3 NA Intergenic L2|LINE|L2 -181957 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 457.5-4 chr10 98271385 98271666 + 3 NA Intergenic Intergenic -3331 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 541-2 chr1 179653584 179653868 + 3 NA intron (NM_001199091, intron 13 of 16) intron (NM_001199091, intron 13 of 16) 47499 NM_001199092 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 755-9 chr8 115589676 115590000 + 3 NA intron (NM_001282902, intron 3 of 5) AluSx1|SINE|Alu 78175 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 405-19 chr3 108481664 108481809 + 3 NA intron (NM_014981, intron 12 of 41) L2a|LINE|L2 47586 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 569.5-3 chr10 110243108 110243452 + 3 NA intron (NM_001008541, intron 2 of 4) intron (NM_001008541, intron 2 of 4) 17284 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 447-7 chr12 71297477 71297753 + 3 NA Intergenic Intergenic -139616 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 487-31 chr5 143858727 143858929 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 46667 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 475.5-17 chr8 120521610 120521927 + 3 NA intron (NM_022045, intron 20 of 21) intron (NM_022045, intron 20 of 21) 76349 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 682-11 chr3 73982069 73982496 + 3 NA Intergenic L2a|LINE|L2 173038 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 679.5-5 chr2 164429552 164429814 + 3 NA Intergenic Intergenic 138812 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 618 chr1 20998158 20998503 + 3 NA intron (NM_001198803, intron 5 of 12) intron (NM_001198803, intron 5 of 12) -9898 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 318-24 chr20 1345789 1346000 + 3 NA intron (NR_040047, intron 1 of 2) L1MC2|LINE|L1 -16755 NM_080489 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 240.5-29 chr8 89122882 89123049 + 3 NA Intergenic L2c|LINE|L2 634746 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 899.5 chr11 57084198 57084545 + 3 NA Intergenic Intergenic 46837 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 385.5-10 chr14 43306753 43306966 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy 1200424 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 522-31 chr8 72059210 72059463 + 3 NA intron (NM_007332, intron 8 of 26) intron (NM_007332, intron 8 of 26) 16248 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 301.5-27 chr9 132599490 132599614 + 3 NA intron (NR_136309, intron 18 of 18) L1ME4a|LINE|L1 16946 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 516-3 chr10 75450239 75450506 + 3 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 18748 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 273-17 chr2 59031383 59031509 + 3 NA intron (NR_033873, intron 11 of 13) intron (NR_033873, intron 11 of 13) -186262 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 632-3 chr1 223418280 223418623 + 3 NA Intergenic Intergenic 25036 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 482-6 chr14 31806332 31806617 + 3 NA intron (NM_001201573, intron 5 of 8) intron (NM_001201573, intron 5 of 8) 91905 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 501-17 chr5 25979502 25979774 + 3 NA Intergenic L1M2|LINE|L1 788685 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 775.5 chr1 76728132 76728531 + 3 NA Intergenic L2a|LINE|L2 50936 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 425-38 chr8 129355499 129355809 + 3 NA intron (NR_130920, intron 3 of 3) MIRb|SINE|MIR -114414 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 857 chr1 12421367 12421979 + 3 NA intron (NM_015378, intron 65 of 69) intron (NM_015378, intron 65 of 69) -85573 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 478-3 chr10 88873453 88873660 + 3 NA Intergenic Intergenic -6689 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 430-26 chr5 25077405 25077649 + 3 NA Intergenic Intergenic 113129 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 506-4 chr1 174068760 174068959 + 3 NA Intergenic Intergenic -75787 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 552-14 chr2 116115165 116115447 + 3 NA Intergenic Intergenic 771491 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 639-16 chr8 121136344 121136692 + 3 NA Intergenic Intergenic -324472 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 399-21 chr2 198893830 198893992 + 3 NA Intergenic AluSz6|SINE|Alu -518814 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 432-23 chr5 147649782 147649983 + 3 NA intron (NM_001282282, intron 3 of 20) intron (NM_001282282, intron 3 of 20) 89888 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 442-14 chr20 50786455 50786681 + 3 NA Intergenic Intergenic -8326 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 498-21 chr3 116355569 116355921 + 3 NA intron (NM_001318915, intron 1 of 8) L1MA3|LINE|L1 -4279 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 523.5-15 chr6 163354125 163354438 + 3 NA Intergenic Intergenic -7248 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 724-12 chr8 41405048 41405371 + 3 NA Intergenic Intergenic -21446 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 558-7 chr16 59436711 59437025 + 3 NA Intergenic L1MEf|LINE|L1 318323 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 626-8 chr18 69081320 69081603 + 3 NA Intergenic Intergenic 283381 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 259-22 chr5 42507905 42508061 + 3 NA intron (NM_001242401, intron 2 of 10) LTR33|LTR|ERVL -40060 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 350-15 chr2 12242110 12242272 + 3 NA intron (NR_110196, intron 3 of 5) L1M4|LINE|L1 43061 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 294-32 chr5 165806368 165806550 + 3 NA Intergenic L2a|LINE|L2 1119911 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 788 chr1 14131546 14131953 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 288224 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 1000 chr14 70682153 70682579 + 3 NA Intergenic MIRb|SINE|MIR -16332 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 561.5-13 chr8 108382271 108382738 + 3 NA Intergenic AluSq2|SINE|Alu -61079 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 425-19 chr15 60261205 60261518 + 3 NA Intergenic Intergenic 136625 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 404-6 chr1 236820933 236821094 + 3 NA intron (NM_000254, intron 8 of 32) L1MC2|LINE|L1 25721 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 591.5-2 chr13 91632125 91632385 + 3 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 233634 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 374-22 chr3 14908130 14908279 + 3 NA intron (NM_152536, intron 10 of 19) intron (NM_152536, intron 10 of 19) 39301 NR_046253 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 778-4 chr6 87544552 87545023 + 3 NA intron (NR_146754, intron 5 of 18) intron (NR_146754, intron 5 of 18) 45200 NM_020320 57038 Hs.485910 NM_020320 ENSG00000146282 RARS2 ArgRS|DALRD2|PCH6|PRO1992|RARSL arginyl-tRNA synthetase 2, mitochondrial protein-coding 555-25 chr6 83767087 83767354 + 3 NA Intergenic Intergenic 57778 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 448.5-7 chr14 32963811 32964018 + 3 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 25035 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 541-14 chr4 117998667 117998969 + 3 NA Intergenic Intergenic -34504 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 453-15 chr2 156861953 156862247 + 3 NA Intergenic (ATTAA)n|Simple_repeat|Simple_repeat -395605 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 494-18 chr7 3375958 3376281 + 3 NA intron (NM_152744, intron 1 of 44) AluJo|SINE|Alu 74867 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 335-57 chr9 106106274 106106567 + 3 NA Intergenic L2c|LINE|L2 411879 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 650-12 chr6 34517918 34518176 + 3 NA intron (NM_001199583, intron 1 of 9) intron (NM_001199583, intron 1 of 9) 3175 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 596.5 chr10 58634909 58635263 + 3 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -79929 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 600-15 chr2 169291207 169291429 + 3 NA intron (NM_004525, intron 7 of 78) intron (NM_004525, intron 7 of 78) 71216 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 414-20 chr2 147209175 147209344 + 3 NA Intergenic Intergenic 622202 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 908-2 chr1 90818852 90819357 + 3 NA intron (NR_135038, intron 1 of 2) MER2|DNA|TcMar-Tigger 17057 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 692.5-3 chr17 33682085 33682534 + 3 NA intron (NM_001094, intron 1 of 9) AluY|SINE|Alu -148549 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 668-6 chr16 81869275 81869799 + 3 NA intron (NM_002661, intron 6 of 32) intron (NM_002661, intron 6 of 32) 90246 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 317-33 chrX 152344741 152344969 + 3 NA intron (NM_000808, intron 3 of 9) L1MC4|LINE|L1 47444 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 682-6 chr14 41880467 41880848 + 3 NA intron (NM_001330106, intron 2 of 4) L1MEf|LINE|L1 273801 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 318-3 chr1 110948757 110948978 + 3 NA intron (NM_018372, intron 3 of 3) intron (NM_018372, intron 3 of 3) 15055 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 406.5-7 chr12 112218108 112218360 + 3 NA intron (NM_001109662, intron 45 of 75) L1MA3|LINE|L1 -54913 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 624-7 chr4 83608408 83608758 + 3 NA Intergenic L1MA5|LINE|L1 72475 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 412.5-20 chr3 2705427 2705586 + 3 NA intron (NM_175607, intron 4 of 24) (AT)n|Simple_repeat|Simple_repeat -186709 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 692-6 chr21 18734613 18734878 + 3 NA intron (NR_109925, intron 2 of 3) L1MA2|LINE|L1 25067 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 648-14 chr6 118085942 118086241 + 3 NA intron (NR_134601, intron 1 of 2) intron (NR_134601, intron 1 of 2) 188 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 301-28 chr3 126230851 126230977 + 3 NA Intergenic L1PA15|LINE|L1 -49728 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 708.5 chrX 49980401 49980735 + 3 NA intron (NM_001127899, intron 3 of 14) intron (NM_001127899, intron 3 of 14) -22580 NR_030241 693124 NR_030241 ENSG00000207758 MIR532 MIRN532|hsa-mir-532|mir-532 microRNA 532 ncRNA 506-26 chr7 24581308 24581826 + 3 NA intron (NM_001303037, intron 1 of 11) MER20|DNA|hAT-Charlie 8115 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 593-8 chr2 29803775 29804127 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 117635 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 550-15 chr21 24884104 24884327 + 3 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 43665 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 428.5-4 chr10 81564565 81564793 + 3 NA Intergenic LTR77|LTR|ERV1 -310515 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 307.5-19 chr2 9523356 9523524 + 3 NA intron (NM_003183, intron 6 of 18) intron (NM_003183, intron 6 of 18) 32390 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 318-36 chr6 37838899 37839044 + 3 NA intron (NM_021943, intron 1 of 5) L1MB7|LINE|L1 19244 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 454.5-29 chr8 68817121 68817332 + 3 NA intron (NR_146187, intron 13 of 13) L2c|LINE|L2 286964 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 643.5-5 chr19 29804949 29805619 + 3 NA Intergenic Intergenic -6707 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 276-41 chr6 54140112 54140230 + 3 NA intron (NM_001281746, intron 4 of 11) intron (NM_001281746, intron 4 of 11) 28728 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 388.5-17 chr4 85882016 85882377 + 3 NA intron (NM_001287805, intron 1 of 7) MIRb|SINE|MIR -47820 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 553.5-11 chr3 88147378 88147628 + 3 NA intron (NM_001195308, intron 1 of 3) L2a|LINE|L2 2363 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 309-3 chr10 21695245 21695490 + 3 NA intron (NM_004641, intron 14 of 23) MLT1E2|LTR|ERVL-MaLR 161195 NM_001195627 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 348.5-6 chr14 59886004 59886182 + 3 NA Intergenic Intergenic -15317 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 604 chr1 93322144 93322425 + 3 NA intron (NR_034089, intron 8 of 8) intron (NR_034089, intron 8 of 8) 23527 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 486.5-6 chr12 128296178 128296504 + 3 NA intron (NM_001136103, intron 1 of 8) MLT1L|LTR|ERVL-MaLR 2249 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 550.5-15 chr8 116311948 116312363 + 3 NA intron (NR_046215, intron 1 of 13) MIR|SINE|MIR 12904 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 600-16 chr20 46745945 46746202 + 3 NA Intergenic Intergenic 36424 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 545-6 chr10 76746592 76746933 + 3 NA Intergenic L1MEi|LINE|L1 -141282 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 380-16 chr5 56557575 56557819 + 3 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 48559 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 432-17 chr2 179804320 179804668 + 3 NA intron (NR_148056, intron 1 of 9) MIR|SINE|MIR 56414 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 426.5-19 chr4 87194737 87194989 + 3 NA intron (NM_020803, intron 2 of 9) MIR1_Amn|SINE|MIR 25405 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 507-12 chr2 71851516 71851765 + 3 NA Intergenic Intergenic 296222 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 404-14 chr12 116280693 116280840 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -3580 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 439-5 chr15 100493517 100493803 + 3 NA intron (NM_001290341, intron 5 of 13) L1M4|LINE|L1 50626 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 738-2 chr12 44544354 44544716 + 3 NA intron (NM_006159, intron 16 of 20) MER105|DNA|hAT-Charlie 331126 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 827.5-3 chr7 80852620 80852895 + 3 NA intron (NM_006379, intron 2 of 17) AluY|SINE|Alu 66294 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 365-32 chr8 50730678 50730937 + 3 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 566676 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 809 chr10 54604733 54605178 + 3 NA intron (NR_134503, intron 2 of 5) L1M4|LINE|L1 3002 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 646-4 chr4 151544772 151545168 + 3 NA intron (NM_001109977, intron 3 of 13) AluJo|SINE|Alu 135794 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 493-21 chr4 156857301 156857618 + 3 NA intron (NM_016205, intron 1 of 5) intron (NM_016205, intron 1 of 5) 114340 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 750-14 chr8 131428859 131429337 + 3 NA Intergenic L1M5|LINE|L1 -388189 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 423-33 chr6 73940525 73940827 + 3 NA Intergenic Intergenic -128775 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 846-5 chr4 60089223 60089598 + 3 NA Intergenic Intergenic -833209 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 240-21 chr18 67105714 67105845 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 24195 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 453-17 chr21 28273689 28273981 + 3 NA Intergenic Intergenic -45168 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 395.5-6 chr14 53898663 53898854 + 3 NA Intergenic Intergenic 49726 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 377-2 chr1 223647357 223647546 + 3 NA intron (NM_001143962, intron 2 of 20) MER4CL34|LTR|ERV1 18250 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 728.5-6 chr5 120494528 120494932 + 3 NA intron (NM_016644, intron 2 of 2) L1MD1|LINE|L1 29099 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 344.5-31 chr7 7116997 7117205 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -20315 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 530-28 chr8 114654987 114655284 + 3 NA Intergenic Intergenic 1012878 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 391-6 chr14 67486197 67486347 + 3 NA intron (NM_001348543, intron 2 of 2) THE1B|LTR|ERVL-MaLR 2449 NM_001348543 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 493-5 chr13 72487316 72487651 + 3 NA Intergenic Intergenic 240146 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 707-7 chr2 229401906 229402247 + 3 NA intron (NM_139072, intron 10 of 12) L1M5|LINE|L1 -130789 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 579.5-12 chr4 46148532 46148725 + 3 NA Intergenic L1ME1|LINE|L1 -24574 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 801-9 chr6 90307630 90307980 + 3 NA Intergenic L1MB2|LINE|L1 -4937 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 447-22 chr4 173993894 173994134 + 3 NA Intergenic L1MC4a|LINE|L1 96741 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 314-14 chr16 63079752 63079869 + 3 NA Intergenic Intergenic -1043372 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 448-37 chrX 99895006 99895219 + 3 NA Intergenic Intergenic 515161 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 816-5 chr3 188206779 188207098 + 3 NA intron (NM_001167672, intron 1 of 9) MIRb|SINE|MIR -5995 NM_005578 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 488-14 chr3 197882391 197882670 + 3 NA non-coding (NR_158582, exon 21 of 21) non-coding (NR_158582, exon 21 of 21) 67395 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 197-5 chr1 180062400 180062520 + 3 NA intron (NM_014810, intron 26 of 37) intron (NM_014810, intron 26 of 37) -92373 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 341-23 chr3 80591727 80591859 + 3 NA Intergenic AluSz6|SINE|Alu -173104 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 365 chr1 213664561 213664819 + 3 NA Intergenic MLT1M|LTR|ERVL-MaLR -260059 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 598.5-5 chr2 57482791 57483136 + 3 NA Intergenic Intergenic -424688 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 418-24 chr6 160364636 160364813 + 3 NA intron (NM_021977, intron 1 of 10) intron (NM_021977, intron 1 of 10) 16346 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 666.5-6 chr7 123146067 123146447 + 3 NA intron (NM_022444, intron 7 of 14) AluSz6|SINE|Alu 53712 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 714 chr1 118091138 118091489 + 3 NA intron (NM_206996, intron 10 of 48) (CTTTTC)n|Simple_repeat|Simple_repeat 93915 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 391.5-25 chr21 31140139 31140314 + 3 NA intron (NM_001353684, intron 7 of 12) intron (NM_001353684, intron 7 of 12) 20714 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 606.5-5 chr5 78137494 78138091 + 3 NA intron (NM_003664, intron 15 of 26) intron (NM_003664, intron 15 of 26) 156906 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 374-37 chr7 34010242 34010407 + 3 NA intron (NM_133468, intron 7 of 15) Kanga2_a|DNA|TcMar-Tc2 104785 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 772-10 chr5 144639866 144640225 + 3 NA Intergenic L2a|LINE|L2 434654 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 430-16 chr20 57077272 57077481 + 3 NA Intergenic L2a|LINE|L2 -136320 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 387-34 chr7 33065948 33066107 + 3 NA Intergenic L1PA16|LINE|L1 -3230 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 556-2 chr10 73366397 73366693 + 3 NA Intergenic L1MB7|LINE|L1 -7681 NM_001367801 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 379.5-26 chr9 10136329 10136475 + 3 NA intron (NM_002839, intron 3 of 45) L1PA16|LINE|L1 337010 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 696-3 chr13 109538532 109538790 + 3 NA Intergenic L2b|LINE|L2 137965 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 598-5 chr2 32224503 32224954 + 3 NA TTS (NM_017964) TTS (NM_017964) 40158 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 539-11 chr4 11259914 11260331 + 3 NA Intergenic Intergenic -108705 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 555-5 chr12 12973489 12973775 + 3 NA intron (NR_149063, intron 2 of 3) L2|LINE|L2 -6205 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 657.5-3 chr12 74141145 74141377 + 3 NA intron (NR_038300, intron 6 of 6) L1MC4|LINE|L1 151370 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 329-30 chr6 57275873 57276015 + 3 NA Intergenic L1ME3C|LINE|L1 -12598 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 406.5-23 chr5 40932347 40932572 + 3 NA intron (NM_000587, intron 3 of 17) intron (NM_000587, intron 3 of 17) 22962 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 524-13 chr20 62659915 62660212 + 3 NA intron (NM_016354, intron 3 of 11) intron (NM_016354, intron 3 of 11) 6558 NR_024470 100127888 Hs.671273 NR_024470 ENSG00000232803 SLCO4A1-AS1 - SLCO4A1 antisense RNA 1 ncRNA 480-30 chr6 22340400 22340579 + 3 NA Intergenic Intergenic -37654 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 454.5-19 chr6 40679483 40679678 + 3 NA Intergenic Intergenic -92216 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 512.5-2 chr12 23245211 23245397 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR 69668 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 491 chr1 14773578 14773763 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -150459 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 348-12 chr14 51658679 51658832 + 3 NA intron (NM_001267046, intron 1 of 13) intron (NM_001267046, intron 1 of 13) 6845 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 384-27 chr7 92803643 92803847 + 3 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 30214 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 416-7 chr11 16115638 16115908 + 3 NA intron (NM_033326, intron 6 of 15) intron (NM_033326, intron 6 of 15) -146152 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 697-5 chr2 56607695 56608022 + 3 NA Intergenic L1MCb|LINE|L1 -422088 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 480-2 chr1 100111852 100112127 + 3 NA intron (NM_001304829, intron 6 of 15) intron (NM_001304829, intron 6 of 15) 20941 NM_194292 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 442.5-14 chr2 108332541 108332756 + 3 NA intron (NR_037191, intron 3 of 3) MIRb|SINE|MIR 10410 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 565-15 chr6 85192722 85193008 + 3 NA Intergenic LTR1D1|LTR|ERV1 197321 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 492-4 chr11 27875221 27875503 + 3 NA Intergenic Intergenic -153332 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 573-8 chr2 39897066 39897342 + 3 NA Intergenic Intergenic -20430 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 468-2 chr1 167634017 167634302 + 3 NA intron (NM_001322923, intron 1 of 5) L2c|LINE|L2 3927 NM_001322924 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 336.5-12 chr2 203195925 203196130 + 3 NA intron (NM_001114132, intron 46 of 54) MER68|LTR|ERVL -42414 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 801-8 chr4 44098212 44098565 + 3 NA Intergenic L1PA13|LINE|L1 81326 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 565.5-6 chr18 45741303 45741563 + 3 NA intron (NM_001308278, intron 7 of 8) intron (NM_001308278, intron 7 of 8) 14480 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 269-14 chr12 98274721 98274893 + 3 NA Intergenic Intergenic 182338 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 402-9 chr11 62953918 62954183 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 30917 NM_004790 9356 Hs.369252 NM_004790 ENSG00000197901 SLC22A6 HOAT1|OAT1|PAHT|ROAT1 solute carrier family 22 member 6 protein-coding 538.5-22 chrX 121557625 121557960 + 3 NA Intergenic MIRb|SINE|MIR 186820 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 310-24 chr2 138491640 138491764 + 3 NA Intergenic Intergenic -10068 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 528-15 chr2 53754842 53755159 + 3 NA intron (NM_145863, intron 1 of 8) intron (NM_145863, intron 1 of 8) -12783 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 962-4 chr3 82949979 82950426 + 3 NA Intergenic Intergenic 964060 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 650-5 chr2 142083495 142083826 + 3 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 48041 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 645-14 chr7 23216086 23216426 + 3 NA Intergenic Intergenic -30519 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 670.5-3 chr3 50014446 50014839 + 3 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) -74277 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 921-2 chr2 52776162 52776685 + 3 NA Intergenic L2|LINE|L2 -73808 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 621-13 chr3 84103525 84103966 + 3 NA Intergenic MER92-int|LTR|ERV1 765830 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 338.5-6 chr10 29651845 29652105 + 3 NA intron (NM_001323599, intron 3 of 38) L2a|LINE|L2 -17004 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 655-4 chr12 109747517 109747798 + 3 NA intron (NM_032829, intron 2 of 2) L1ME4b|LINE|L1 25830 NR_026661 84983 Hs.675961 NM_032897 ENSG00000255650 FAM222A-AS1 - FAM222A antisense RNA 1 ncRNA 480-29 chr5 148839643 148839919 + 3 NA Intergenic MIRc|SINE|MIR 13188 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 415.5-8 chr16 68186466 68186941 + 3 NA intron (NM_004555, intron 8 of 10) intron (NM_004555, intron 8 of 10) 46796 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 580-13 chr3 76748015 76748263 + 3 NA Intergenic Intergenic -291960 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 412-27 chr5 96649296 96649523 + 3 NA Intergenic Intergenic -12628 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 391.5-12 chr15 91119593 91119983 + 3 NA intron (NM_001323039, intron 1 of 12) L1M5|LINE|L1 17992 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 571 chr1 27782902 27783128 + 3 NA intron (NM_177424, intron 1 of 8) intron (NM_177424, intron 1 of 8) 9796 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 777-7 chr5 11494559 11494888 + 3 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 94194 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 639 chr1 102898489 102898964 + 3 NA non-coding (NR_134980, exon 57 of 68) non-coding (NR_134980, exon 57 of 68) 209770 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 523-7 chr11 63005609 63005948 + 3 NA intron (NM_001184736, intron 1 of 9) MLT1C|LTR|ERVL-MaLR 10063 NM_004254 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 536-21 chr8 120957236 120957525 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -145334 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 679-11 chr2 54687101 54687574 + 3 NA Intergenic Intergenic -37675 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 576-11 chr3 30976183 30976598 + 3 NA Intergenic L1ME3Cz|LINE|L1 -81729 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 745.5-6 chr14 27219427 27220077 + 3 NA Intergenic LTR10A|LTR|ERV1 311110 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 718.5-9 chr7 50695267 50695592 + 3 NA intron (NM_001371009, intron 2 of 15) intron (NM_001371009, intron 2 of 15) 9872 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 382-6 chr12 69833620 69833789 + 3 NA intron (NM_182530, intron 1 of 24) MIRb|SINE|MIR 8477 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 523-2 chr1 74783852 74784112 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -50574 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 319-37 chr7 114551604 114551772 + 3 NA intron (NR_033767, intron 4 of 17) L3b|LINE|CR1 -101657 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 816-6 chr4 144464702 144465161 + 3 NA Intergenic Intergenic 181088 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 400.5-6 chr10 111744611 111744804 + 3 NA Intergenic Intergenic 439058 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 431-21 chr3 109917917 109918483 + 3 NA Intergenic MADE1|DNA|TcMar-Mariner 315372 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 607.5-17 chr8 134792784 134793003 + 3 NA Intergenic Intergenic 7714 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 550.5-7 chr12 115187930 115188194 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -503887 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 299.5-15 chr17 70641361 70641604 + 3 NA Intergenic Intergenic 471947 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 536.5-16 chr6 135401978 135402250 + 3 NA intron (NM_017651, intron 21 of 27) L1MB7|LINE|L1 95626 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 739-4 chr2 196021757 196022038 + 3 NA intron (NM_018897, intron 8 of 64) AluSz|SINE|Alu 46940 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 735-4 chr18 60352526 60352833 + 3 NA Intergenic Intergenic 20096 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 581 chr1 198335398 198335633 + 3 NA Intergenic L1PA12|LINE|L1 178517 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 240-17 chr15 25293597 25293749 + 3 NA intron (NR_146177, intron 146 of 147) L1MA9|LINE|L1 15330 NR_001289 338429 NR_001289 ENSG00000239169 SNORD109B HBII-438B small nucleolar RNA, C/D box 109B snoRNA 576-17 chr7 17321880 17322170 + 3 NA intron (NM_001621, intron 2 of 10) intron (NM_001621, intron 2 of 10) 23373 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 628.5-6 chr2 129003232 129003600 + 3 NA Intergenic Intergenic 138816 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 438.5-7 chr2 126841431 126841633 + 3 NA Intergenic Intergenic -57358 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 631-8 chr2 127240106 127240353 + 3 NA Intergenic L1MCa|LINE|L1 -19930 NM_001367502 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 936.5 chr3 71407309 71407741 + 3 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) -102754 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 342-18 chr2 55999003 55999185 + 3 NA intron (NR_126406, intron 2 of 2) Charlie19a|DNA|hAT-Charlie 1701 NR_030623 100126319 NR_030623 ENSG00000211520 MIR216B MIRN216B|mir-216b microRNA 216b ncRNA 394-4 chr10 47234431 47234571 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -65696 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 592.5-8 chr20 46939849 46940077 + 3 NA intron (NM_172110, intron 1 of 13) MIRb|SINE|MIR 45120 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 534-26 chr4 54352754 54353049 + 3 NA intron (NR_147160, intron 1 of 1) L1PB4|LINE|L1 20009 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 333-12 chr18 1464440 1464568 + 3 NA Intergenic Intergenic -104875 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 418.5-27 chr7 70740053 70740217 + 3 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -392009 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 323-26 chr8 25289832 25290000 + 3 NA intron (NM_024940, intron 5 of 51) intron (NM_024940, intron 5 of 51) -55486 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 562.5-2 chr1 147151564 147151977 + 3 NA Intergenic L1MEc|LINE|L1 20700 NR_103871 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 355-24 chr22 47474995 47475140 + 3 NA intron (NR_109967, intron 1 of 2) L1MC3|LINE|L1 12044 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 529-8 chr15 63245117 63245456 + 3 NA intron (NM_016530, intron 2 of 7) MIR3|SINE|MIR -32264 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 552.5-6 chr14 24910651 24910901 + 3 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 138224 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 684 chr1 146041085 146041486 + 3 NA Intergenic L1M5|LINE|L1 10959 NR_104085 101954276 NR_104085 ENSG00000201558 RNVU1-6 RNU1-99|vU1.6 RNA, variant U1 small nuclear 6 snRNA 574-13 chr3 135016528 135016771 + 3 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 221389 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 767-4 chr2 96230043 96230539 + 3 NA intron (NR_046322, intron 1 of 3) MER54A|LTR|ERVL 15652 NR_145789 109623481 NR_145789 SNORA112 - small nucleolar RNA, H/ACA box 112 snoRNA 322.5-28 chr7 39273387 39273528 + 3 NA intron (NM_001370959, intron 4 of 9) L1MD3|LINE|L1 55677 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 544.5-2 chr12 814861 815288 + 3 NA intron (NM_001184985, intron 2 of 27) MER1A|DNA|hAT-Charlie 62151 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 406.5-6 chr12 32513500 32513682 + 3 NA intron (NM_001370297, intron 1 of 14) L2c|LINE|L2 11428 NM_001370297 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 390 chr10 19027830 19028113 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -20830 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 586.5-7 chr15 90586053 90586345 + 3 NA intron (NM_001042574, intron 2 of 14) intron (NM_001042574, intron 2 of 14) 56276 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 974.5 chr8 115083317 115083684 + 3 NA Intergenic MLT2B4|LTR|ERVL 584513 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 561-6 chr10 117335599 117335882 + 3 NA intron (NM_173791, intron 2 of 4) L1MC4|LINE|L1 39700 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 293-31 chr8 132783039 132783156 + 3 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 7709 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 211.5-28 chr5 109456199 109456308 + 3 NA Intergenic AluYh3a3|SINE|Alu -46279 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 538.5-18 chr5 26588801 26589109 + 3 NA Intergenic L1MC1|LINE|L1 449631 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 677-15 chr9 2930643 2930933 + 3 NA Intergenic Intergenic -86693 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 447-28 chr8 105095560 105095716 + 3 NA Intergenic Intergenic -222800 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 276-36 chr4 62627614 62627767 + 3 NA Intergenic Intergenic -465925 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 790-7 chr3 120055246 120055663 + 3 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 29194 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 594 chr1 220846886 220847264 + 3 NA intron (NR_046901, intron 1 of 2) intron (NR_046901, intron 1 of 2) 17820 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 473-19 chr4 184814530 184814763 + 3 NA intron (NM_001995, intron 1 of 20) intron (NM_001995, intron 1 of 20) -2387 NM_001286708 2180 Hs.406678 NM_001995 ENSG00000151726 ACSL1 ACS1|FACL1|FACL2|LACS|LACS1|LACS2 acyl-CoA synthetase long chain family member 1 protein-coding 800-11 chr9 113451398 113452072 + 3 NA intron (NM_144488, intron 1 of 25) L1MEc|LINE|L1 7005 NM_144488 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 1387-2 chr5 5816051 5816861 + 3 NA Intergenic L1MC3|LINE|L1 393779 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 649-3 chr1 195889022 195889380 + 3 NA Intergenic L2a|LINE|L2 199514 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 755-8 chr7 55508719 55509264 + 3 NA intron (NM_001321242, intron 2 of 4) AluJr|SINE|Alu 17889 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 739-2 chr16 7736996 7737477 + 3 NA Intergenic AluSp|SINE|Alu 404391 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 754-2 chr13 60915872 60916245 + 3 NA Intergenic Intergenic 243103 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 409.5-28 chr7 111520918 111521170 + 3 NA intron (NM_032549, intron 2 of 5) intron (NM_032549, intron 2 of 5) 41247 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 357.5-13 chr20 14402481 14402795 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -64971 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 819-9 chr7 93944973 93945392 + 3 NA Intergenic Intergenic 23447 NM_004126 2791 Hs.83381 NM_004126 ENSG00000127920 GNG11 GNGT11 G protein subunit gamma 11 protein-coding 735-7 chr5 110762082 110762532 + 3 NA non-coding (NR_138151, exon 9 of 9) non-coding (NR_138151, exon 9 of 9) 23300 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 450-22 chr8 82947368 82947663 + 3 NA intron (NR_134295, intron 2 of 3) L1MC4|LINE|L1 35411 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 584-18 chr5 168813769 168814003 + 3 NA intron (NM_003062, intron 8 of 35) intron (NM_003062, intron 8 of 35) -45631 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 453-10 chr17 30404306 30404485 + 3 NA intron (NM_001304, intron 2 of 20) intron (NM_001304, intron 2 of 20) 23917 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 325-26 chr6 113589408 113589598 + 3 NA Intergenic Intergenic 60572 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 514.5-23 chrX 70285677 70285968 + 3 NA TTS (NM_001032726) TTS (NM_001032726) 3650 NM_001032726 347517 Hs.276327 NM_001032726 ENSG00000147127 RAB41 - RAB41, member RAS oncogene family protein-coding 373-39 chr7 17409456 17409642 + 3 NA intron (NR_110015, intron 1 of 2) L1ME3E|LINE|L1 34632 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 407-26 chr7 26695944 26696211 + 3 NA intron (NM_003930, intron 9 of 12) intron (NM_003930, intron 9 of 12) 58206 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 630.5-10 chr5 79664951 79665431 + 3 NA intron (NM_001349553, intron 13 of 16) intron (NM_001349553, intron 13 of 16) -24645 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 394-11 chr17 59104138 59104290 + 3 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 2666 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 421.5-18 chr4 26656860 26657000 + 3 NA intron (NM_001292054, intron 4 of 17) intron (NM_001292054, intron 4 of 17) 72846 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 676.5-8 chr3 89359840 89360165 + 3 NA intron (NM_182644, intron 5 of 6) MIRb|SINE|MIR 252381 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 383-20 chr22 22870197 22870507 + 3 NA Intergenic Intergenic -15915 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 508-10 chr2 236352637 236352901 + 3 NA intron (NR_073043, intron 15 of 19) intron (NR_073043, intron 15 of 19) -88424 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 455-23 chr3 57266992 57267221 + 3 NA intron (NM_012096, intron 19 of 21) L1MA2|LINE|L1 -2460 NR_135535 105377102 Hs.745243 NR_135535 LOC105377102 - uncharacterized LOC105377102 ncRNA 472.5-21 chr8 132771631 132771892 + 3 NA Intergenic Intergenic -3597 NM_001362971 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 683-3 chr6 36173211 36173686 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -23296 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 473-17 chr4 30879130 30879301 + 3 NA intron (NM_032457, intron 1 of 2) (TTCT)n|Simple_repeat|Simple_repeat 158846 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 420-3 chr1 111135792 111136037 + 3 NA intron (NM_001349881, intron 3 of 9) intron (NM_001349881, intron 3 of 9) -3469 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 496.5-9 chr2 226685532 226685785 + 3 NA Intergenic MER67A|LTR|ERV1 -26865 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 328.5-24 chr2 131430637 131430824 + 3 NA Intergenic Intergenic 14164 NR_002826 401010 Hs.452369 NR_002826 NOC2LP2 - NOC2 like nucleolar associated transcriptional repressor pseudogene 2 pseudo 474-33 chr7 42463810 42464116 + 3 NA Intergenic L1M6|LINE|L1 -226754 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 561-7 chr11 75038130 75038405 + 3 NA Intergenic L1MB4|LINE|L1 49334 NM_001367864 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 533-17 chr3 56517492 56517765 + 3 NA Intergenic L1ME3G|LINE|L1 -39528 NR_148373 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 595-14 chr4 69750047 69750283 + 3 NA intron (NM_014465, intron 3 of 7) intron (NM_014465, intron 3 of 7) 10455 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 326.5-6 chr10 101236992 101237109 + 3 NA intron (NR_029380, intron 2 of 2) intron (NR_029380, intron 2 of 2) 7456 NR_029380 399806 Hs.386143 NR_029380 LBX1-AS1 MUSE LBX1 antisense RNA 1 ncRNA 953 chr1 210432756 210433100 + 3 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 103562 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 457.5-2 chr1 188408511 188408792 + 3 NA Intergenic Intergenic 965023 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 1024-2 chr8 111819385 111820149 + 3 NA Intergenic L1ME2|LINE|L1 443128 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 424.5-18 chr6 129926266 129926461 + 3 NA Intergenic L1M5|LINE|L1 -65048 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 582-16 chr3 135801043 135801323 + 3 NA Intergenic Intergenic -164545 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 417-27 chr22 32450127 32450400 + 3 NA intron (NM_174932, intron 2 of 14) Tigger3a|DNA|TcMar-Tigger 7123 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 590-17 chr9 70275912 70276230 + 3 NA intron (NM_015110, intron 3 of 24) intron (NM_015110, intron 3 of 24) 17093 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 538.5-11 chr22 25901160 25901459 + 3 NA intron (NM_001318245, intron 29 of 43) intron (NM_001318245, intron 29 of 43) 159121 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 350-17 chr2 123823155 123823333 + 3 NA Intergenic Intergenic 201930 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 340-31 chr5 45566898 45567081 + 3 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 129391 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 337-2 chr1 28239586 28239698 + 3 NA Intergenic Intergenic 3518 NM_178190 93974 Hs.744914 NM_016311 ENSG00000130770 ATP5IF1 ATPI|ATPIF1|ATPIP|IP ATP synthase inhibitory factor subunit 1 protein-coding 466-26 chr6 66577287 66577623 + 3 NA Intergenic Intergenic 789576 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 545-9 chr12 56664404 56664762 + 3 NA intron (NM_001282601, intron 6 of 6) intron (NM_001282601, intron 6 of 6) -18599 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 349.5-2 chr1 102464136 102464312 + 3 NA Intergenic Intergenic -466990 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 486-28 chr22 48230685 48230945 + 3 NA Intergenic Intergenic -43549 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 533-19 chr3 109226220 109226544 + 3 NA Intergenic L2c|LINE|L2 48217 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 463.5-15 chr4 159661688 159661919 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 115981 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 564-20 chr5 54305946 54306235 + 3 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 4483 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 559.5-14 chr3 122640224 122640486 + 3 NA Intergenic Intergenic 24740 NM_152615 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 529.5 chr1 60395076 60395356 + 3 NA Intergenic Intergenic 227469 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 666.5 chr1 176399471 176399908 + 3 NA Intergenic L1MA1|LINE|L1 -63486 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 591-3 chr10 43537026 43537362 + 3 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 31265 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 927 chr15 91124582 91125044 + 3 NA intron (NM_001323039, intron 1 of 12) AluSz|SINE|Alu 23017 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 551.5 chr1 158418547 158418983 + 3 NA Intergenic Intergenic 2101 NM_001004476 391107 Hs.626815 NM_001004476 ENSG00000180708 OR10K2 OR1-4 olfactory receptor family 10 subfamily K member 2 protein-coding 723-9 chr7 29753406 29753828 + 3 NA Intergenic Intergenic -52937 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 423-37 chr8 14419816 14420061 + 3 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 433572 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 517.5-6 chr15 85162529 85162825 + 3 NA Intergenic L1MB4|LINE|L1 72104 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 863-3 chr2 37083244 37083921 + 3 NA promoter-TSS (NM_174931) promoter-TSS (NM_174931) 790 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 703.5 chr1 40874284 40874671 + 3 NA Intergenic AluSz|SINE|Alu -12114 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 466-20 chr3 29088714 29088885 + 3 NA Intergenic Intergenic 192140 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 532.5-3 chr1 101434466 101434772 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 110782 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 811-3 chr8 57527125 57527395 + 3 NA Intergenic Intergenic 183473 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 545-21 chr7 8160533 8160861 + 3 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 101355 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 667-3 chr2 156399398 156399831 + 3 NA Intergenic Intergenic -35938 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 688 chr1 118302432 118302731 + 3 NA Intergenic Intergenic -117353 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 287.5 chr1 56947440 56947565 + 3 NA intron (NM_000066, intron 6 of 11) L2c|LINE|L2 18513 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 634.5-8 chr2 206200518 206200887 + 3 NA intron (NM_001098199, intron 2 of 2) FLAM_C|SINE|Alu -2674 NR_104359 101669764 Hs.574781 NR_104359 GPR1-AS GPR1-AS1|GPR1AS GPR1 antisense RNA ncRNA 661.5-10 chr5 172585806 172586153 + 3 NA Intergenic MIRb|SINE|MIR -26965 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 277.5-12 chr15 56503078 56503240 + 3 NA Intergenic L1M3f|LINE|L1 -38022 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 595.5-6 chr19 763111 763479 + 3 NA intron (NR_135168, intron 3 of 3) intron (NR_135168, intron 3 of 3) 12183 NR_135168 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 881-4 chr6 70738251 70738575 + 3 NA intron (NM_001044305, intron 2 of 10) intron (NM_001044305, intron 2 of 10) 69883 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 515 chr1 5854721 5855048 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 7857 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 807-5 chr15 64236355 64236841 + 3 NA intron (NM_001329607, intron 4 of 11) L1PB4|LINE|L1 -73443 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 446-7 chr11 9281144 9281386 + 3 NA 3' UTR (NM_015012, exon 7 of 7) 3' UTR (NM_015012, exon 7 of 7) -15915 NM_015213 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 460.5-16 chr2 172036500 172036707 + 3 NA intron (NM_001322279, intron 1 of 9) AluY|SINE|Alu 36650 NR_136273 254042 Hs.298250 NM_199227 ENSG00000172878 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D, mitochondrial protein-coding 385.5-5 chr11 35897779 35898148 + 3 NA Intergenic L1ME3A|LINE|L1 -46018 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 385.5-8 chr12 115165562 115165737 + 3 NA Intergenic Intergenic -481474 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 606-6 chr2 209841106 209841349 + 3 NA intron (NM_032504, intron 20 of 63) intron (NM_032504, intron 20 of 63) 69234 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 440-12 chr17 75260358 75260550 + 3 NA intron (NM_001291641, intron 1 of 17) intron (NM_001291641, intron 1 of 17) 1152 NM_138619 23163 Hs.87726 NM_014001 ENSG00000125447 GGA3 - golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 537-14 chr22 38866824 38867120 + 3 NA exon (NM_001303494, exon 5 of 5) exon (NM_001303494, exon 5 of 5) 5244 NM_001303494 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 651-6 chr2 154931398 154931778 + 3 NA Intergenic MER1B|DNA|hAT-Charlie 232893 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 536-6 chr14 57255721 57256004 + 3 NA intron (NM_006544, intron 1 of 17) ERV3-16A3_I-int|LTR|ERVL 13043 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 636-14 chr20 55419683 55420103 + 3 NA TTS (NR_110064) TTS (NR_110064) -3150 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 396-9 chr14 49488745 49488912 + 3 NA Intergenic L1MEh|LINE|L1 97552 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 294-5 chr1 172536793 172536904 + 3 NA intron (NM_014283, intron 1 of 23) MLT1D|LTR|ERVL-MaLR 3698 NM_001282750 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 401-27 chr4 74179535 74179733 + 3 NA intron (NM_001144978, intron 3 of 7) intron (NM_001144978, intron 3 of 7) 21516 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 582.5-10 chr5 81965403 81966010 + 3 NA Intergenic L1ME1|LINE|L1 -6317 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 513-17 chr2 108706216 108706403 + 3 NA Intergenic L1M1|LINE|L1 -13173 NM_006267 5903 Hs.199561 NM_006267 ENSG00000153201 RANBP2 ADANE|ANE1|IIAE3|NUP358|TRP1|TRP2 RAN binding protein 2 protein-coding 470-14 chr14 64699102 64699374 + 3 NA Intergenic Intergenic -5186 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 369.5-11 chr18 78293943 78294183 + 3 NA Intergenic Intergenic -300336 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 295-43 chr7 9147522 9147807 + 3 NA Intergenic Intergenic -486606 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 507-10 chr17 29207202 29207497 + 3 NA Intergenic AluJb|SINE|Alu -26951 NM_203318 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 565-14 chr5 164073281 164073667 + 3 NA Intergenic Intergenic 393928 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 360-15 chr16 2368292 2368466 + 3 NA intron (NR_003574, intron 4 of 16) intron (NR_003574, intron 4 of 16) 27457 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 956-2 chr12 59444620 59445116 + 3 NA Intergenic L1MA3|LINE|L1 -151161 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 519-4 chr10 94914148 94914438 + 3 NA Intergenic L1PA14|LINE|L1 -24365 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 931.5-2 chr8 124601467 124601879 + 3 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 62550 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 1040.5 chr15 90346115 90346492 + 3 NA TTS (NR_028287) TTS (NR_028287) 3144 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 703 chr1 86737525 86737940 + 3 NA intron (NM_016009, intron 7 of 8) L2a|LINE|L2 33156 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 620.5-3 chr18 64362255 64362484 + 3 NA intron (NR_033881, intron 5 of 9) THE1C|LTR|ERVL-MaLR -102314 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 453-28 chr7 86963035 86963279 + 3 NA intron (NM_001291990, intron 2 of 21) intron (NM_001291990, intron 2 of 21) 2742 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 678 chr11 108460825 108461101 + 3 NA intron (NR_147053, intron 3 of 12) AluSp|SINE|Alu 6566 NM_152587 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 607.5-14 chr5 100609596 100609930 + 3 NA Intergenic L1PREC2|LINE|L1 74389 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 474-38 chr8 121262210 121262418 + 3 NA Intergenic Intergenic -377032 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 515-18 chr6 112804273 112804542 + 3 NA Intergenic Intergenic 457077 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 427.5-28 chr8 90693275 90693429 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -47269 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 517-4 chr12 53796788 53797037 + 3 NA Intergenic Intergenic -39878 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 483-37 chr8 107914590 107914854 + 3 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 167217 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 657-14 chr9 33854122 33854412 + 3 NA intron (NM_017811, intron 1 of 4) L1M5|LINE|L1 37107 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 611-6 chr2 71631389 71631683 + 3 NA intron (NM_001130987, intron 41 of 55) intron (NM_001130987, intron 41 of 55) 164837 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 441-27 chr3 72794161 72794440 + 3 NA intron (NM_018130, intron 9 of 10) intron (NM_018130, intron 9 of 10) 54145 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 808-2 chr11 28619397 28619856 + 3 NA Intergenic Intergenic -142078 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 842.5-3 chr14 68706470 68707072 + 3 NA Intergenic Intergenic -77984 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 754.5-5 chr5 46068230 46068585 + 3 NA Intergenic ALR/Alpha|Satellite|centr -372027 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 571.5 chr10 6359917 6360174 + 3 NA Intergenic L1M1|LINE|L1 9729 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 469.5-10 chr2 13082618 13082827 + 3 NA Intergenic MER4C|LTR|ERV1 -75709 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 603-11 chr8 137471884 137472249 + 3 NA Intergenic Intergenic -58478 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 657-2 chr15 42241241 42241604 + 3 NA intron (NM_015497, intron 7 of 19) L2c|LINE|L2 32011 NM_015497 25963 Hs.511138 NM_015497 ENSG00000103978 TMEM87A - transmembrane protein 87A protein-coding 462-3 chr1 114311166 114311388 + 3 NA Intergenic MER54A|LTR|ERVL -157408 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 460 chr1 100127616 100127917 + 3 NA intron (NM_001304829, intron 1 of 15) FLAM_A|SINE|Alu 5164 NM_194292 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 372-7 chr1 247346804 247347031 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -15050 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 699-5 chr14 60392459 60392862 + 3 NA Intergenic L1M5|LINE|L1 69464 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 492-18 chr2 147900188 147900472 + 3 NA intron (NM_001278579, intron 5 of 11) intron (NM_001278579, intron 5 of 11) 55301 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 555-3 chr1 105605757 105605986 + 3 NA intron (NR_125954, intron 2 of 3) MER92D|LTR|ERV1 13064 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 673 chr13 102392068 102392434 + 3 NA intron (NM_001321949, intron 1 of 5) intron (NM_001321949, intron 1 of 5) 2268 NR_036486 283480 Hs.662212 NR_036486 ENSG00000243319 FGF14-IT1 - FGF14 intronic transcript 1 ncRNA 694-6 chr2 75157321 75157816 + 3 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 41952 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 727-3 chr11 130763044 130763527 + 3 NA Intergenic Intergenic 90329 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 669.5-10 chr8 105289249 105289547 + 3 NA Intergenic L1MEf|LINE|L1 -29040 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 311-2 chr1 22491318 22491535 + 3 NA exon (NM_001330398, exon 3 of 16) exon (NM_001330398, exon 3 of 16) 39575 NM_001083621 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 580.5-10 chr7 93447135 93447328 + 3 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 35624 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 309-2 chr1 169007809 169007984 + 3 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 79109 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 765-4 chr2 13097560 13098011 + 3 NA Intergenic L1MA6|LINE|L1 -90772 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 412-33 chr8 97358955 97359140 + 3 NA TTS (NR_145760) TTS (NR_145760) 782 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 399.5-7 chr15 35556007 35556228 + 3 NA intron (NR_038251, intron 1 of 2) (AATTAT)n|Simple_repeat|Simple_repeat 9922 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 444-11 chr17 61798806 61799080 + 3 NA intron (NM_032043, intron 9 of 19) intron (NM_032043, intron 9 of 19) 64616 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 798-4 chr3 190247712 190248051 + 3 NA Intergenic L1PB1|LINE|L1 74565 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 298-36 chr9 105032690 105032840 + 3 NA Intergenic Intergenic -104610 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 327-9 chr11 81102165 81102330 + 3 NA Intergenic Intergenic -339444 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 594-10 chr2 174127325 174127807 + 3 NA intron (NM_001011708, intron 4 of 9) Charlie4z|DNA|hAT-Charlie 102286 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 387-32 chr6 167795391 167795593 + 3 NA promoter-TSS (NR_149041) promoter-TSS (NR_149041) -37 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 745 chr1 114971548 114971956 + 3 NA intron (NM_001282541, intron 27 of 31) L1M1|LINE|L1 -58072 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 568-13 chr4 62001514 62001801 + 3 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 160108 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 554.5-9 chr2 142327148 142327378 + 3 NA Intergenic Intergenic -195562 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 356-12 chr14 31115054 31115287 + 3 NA intron (NM_015382, intron 30 of 42) intron (NM_015382, intron 30 of 42) 88527 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 353-35 chr7 26273421 26273588 + 3 NA Intergenic L1ME3A|LINE|L1 -18374 NM_001362754 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 302-10 chr13 82886190 82886411 + 3 NA Intergenic MER4A|LTR|ERV1 996093 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 371.5 chr1 22465970 22466153 + 3 NA intron (NM_001083621, intron 2 of 18) L1MB7|LINE|L1 14210 NM_001083621 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 258-28 chr9 28049315 28049434 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -475508 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 482.5-9 chr2 28055776 28056065 + 3 NA intron (NM_199193, intron 7 of 13) L1MA9|LINE|L1 59553 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 576-3 chr13 76034918 76035126 + 3 NA Intergenic L2c|LINE|L2 -99890 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 582-8 chr15 70767601 70767852 + 3 NA Intergenic Intergenic -4168 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 866.5-4 chr2 157133819 157134316 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -123638 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 476.5-11 chr2 77656697 77657024 + 3 NA Intergenic Intergenic -134427 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 345-41 chr7 80557338 80557542 + 3 NA Intergenic L1ME3Cz|LINE|L1 -44767 NM_001289911 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 481-16 chr5 14948213 14948497 + 3 NA Intergenic L1ME3A|LINE|L1 -76577 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 346.5-19 chr3 131937826 131938118 + 3 NA intron (NM_001289112, intron 1 of 15) L1M8|LINE|L1 47959 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 477.5-3 chr1 242537747 242537928 + 3 NA Intergenic AluSx|SINE|Alu -13140 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 270-16 chr2 201728628 201728725 + 3 NA intron (NM_020919, intron 14 of 33) intron (NM_020919, intron 14 of 33) -30032 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 386-13 chr17 73301369 73301685 + 3 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 10474 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 675.5-4 chr16 11064763 11065292 + 3 NA intron (NM_015226, intron 18 of 22) intron (NM_015226, intron 18 of 22) 120463 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 242-36 chr9 71454687 71454778 + 3 NA Intergenic Intergenic -7761 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 353 chr1 40097465 40097679 + 3 NA promoter-TSS (NM_000310) promoter-TSS (NM_000310) -102 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 306-15 chr2 154916328 154916441 + 3 NA Intergenic Intergenic 217689 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 795-6 chr6 128783020 128783583 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -99837 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 638.5-8 chr4 86688460 86688841 + 3 NA intron (NM_080685, intron 4 of 47) intron (NM_080685, intron 4 of 47) 94335 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 513-3 chr1 159971681 159971881 + 3 NA intron (NR_038849, intron 1 of 2) intron (NR_038849, intron 1 of 2) 10557 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 653-5 chr16 53428382 53428801 + 3 NA Intergenic L2a|LINE|L2 -5880 NM_001323610 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 534-23 chr3 108594446 108594719 + 3 NA intron (NM_014648, intron 1 of 32) L1PA13|LINE|L1 4860 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 1205 chr15 101578425 101578930 + 3 NA Intergenic Intergenic 35662 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 316-23 chr21 19446237 19446360 + 3 NA Intergenic Intergenic 453457 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 522-18 chr19 28007389 28007681 + 3 NA non-coding (NR_146733, exon 5 of 7) non-coding (NR_146733, exon 5 of 7) -213595 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 393-9 chr13 65660572 65660819 + 3 NA Intergenic Intergenic -205352 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 718.5-2 chr10 31295921 31296234 + 3 NA Intergenic L1ME3A|LINE|L1 -22340 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 492-6 chr11 61545723 61546006 + 3 NA intron (NM_001365809, intron 5 of 12) intron (NM_001365809, intron 5 of 12) -2988 NM_001370210 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 1006-2 chr10 60886350 60886984 + 3 NA intron (NM_001350906, intron 8 of 12) intron (NM_001350906, intron 8 of 12) 57518 NM_014836 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 397.5-3 chr10 9791098 9791286 + 3 NA Intergenic Intergenic -267530 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 278.5-13 chr21 30558398 30558519 + 3 NA Intergenic L1ME3|LINE|L1 2855 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 589.5-7 chr4 63090995 63091219 + 3 NA Intergenic Intergenic -929342 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 590.5-13 chr20 45398456 45399000 + 3 NA intron (NR_003189, intron 3 of 5) L1MCa|LINE|L1 -7265 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 352.5-4 chr1 203285907 203286040 + 3 NA Intergenic Intergenic -1179 NR_117097 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 571-19 chr6 34854365 34854695 + 3 NA intron (NM_017754, intron 8 of 20) MER106B|DNA|hAT-Charlie 33512 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 728.5-2 chr13 90766748 90766990 + 3 NA Intergenic Intergenic 159728 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 481-15 chr4 150996995 150997162 + 3 NA intron (NM_001367550, intron 2 of 56) intron (NM_001367550, intron 2 of 56) 18189 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 504-10 chr14 70804163 70804352 + 3 NA intron (NM_033141, intron 1 of 12) LTR67B|LTR|ERVL 4914 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 704-8 chr3 86489885 86490502 + 3 NA intron (NR_135563, intron 1 of 1) intron (NR_135563, intron 1 of 1) 8250 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 588-26 chr4 14051239 14051517 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -60590 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 521-14 chr5 176176398 176176693 + 3 NA intron (NR_036494, intron 9 of 25) intron (NR_036494, intron 9 of 25) 22750 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 999.5-3 chr22 37670495 37670996 + 3 NA Intergenic AluJr4|SINE|Alu -4891 NM_002305 3956 Hs.445351 NM_002305 ENSG00000100097 LGALS1 GAL1|GBP galectin 1 protein-coding 651 chr1 42863078 42863374 + 3 NA intron (NR_104171, intron 1 of 3) L1M2|LINE|L1 5604 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 665-3 chr12 83732866 83733293 + 3 NA Intergenic L1PA7|LINE|L1 1045924 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 405-30 chr5 100452602 100453031 + 3 NA Intergenic L1MA5A|LINE|L1 -64562 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 567-15 chr3 79165967 79166235 + 3 NA intron (NM_002941, intron 2 of 30) MLT2C1|LTR|ERVL -146642 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 599.5-8 chr3 116879392 116879679 + 3 NA Intergenic Intergenic -29168 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 857-8 chr7 113950058 113950586 + 3 NA Intergenic L1PA13|LINE|L1 -31313 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 474-37 chr8 100105276 100105551 + 3 NA 5' UTR (NM_001286693, exon 1 of 26) 5' UTR (NM_001286693, exon 1 of 26) 213 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 431-6 chr11 110751923 110752288 + 3 NA Intergenic L1PB2|LINE|L1 -38916 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 671-10 chr3 55314526 55314816 + 3 NA Intergenic Intergenic 136499 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 486-32 chr3 190929833 190930012 + 3 NA Intergenic L1ME3|LINE|L1 51992 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 240-47 chr8 127261847 127261964 + 3 NA intron (NR_117099, intron 1 of 3) L1MA7|LINE|L1 17268 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 584-8 chr2 162568283 162568542 + 3 NA intron (NM_033272, intron 2 of 15) Tigger3a|DNA|TcMar-Tigger -200524 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 596-12 chr5 36921179 36921480 + 3 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 44560 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 571-21 chr8 27087157 27087462 + 3 NA Intergenic Intergenic -38346 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 572-7 chr2 116666338 116666718 + 3 NA Intergenic L1MB7|LINE|L1 -1148163 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 341-15 chr19 17949880 17950050 + 3 NA Intergenic Intergenic -1337 NM_002248 3780 Hs.158173 NM_002248 ENSG00000105642 KCNN1 KCa2.1|SK1|SKCA1|hSK1 potassium calcium-activated channel subfamily N member 1 protein-coding 312.5-25 chr5 125117991 125118187 + 3 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 81258 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 524.5-15 chr8 73562413 73562731 + 3 NA intron (NM_001164384, intron 10 of 10) intron (NM_001164384, intron 10 of 10) 142498 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 453-34 chr9 136305734 136305987 + 3 NA intron (NM_001291516, intron 1 of 9) intron (NM_001291516, intron 1 of 9) 1041 NM_001291516 399693 Hs.530383 NM_001291516 ENSG00000260220 CCDC187 - coiled-coil domain containing 187 protein-coding 567.5-9 chr19 13480070 13480489 + 3 NA intron (NM_023035, intron 1 of 46) Tigger2|DNA|TcMar-Tigger 26181 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 431-26 chr6 97128952 97129232 + 3 NA intron (NM_001323262, intron 6 of 6) intron (NM_001323262, intron 6 of 6) 119016 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 643-3 chr1 106208238 106208607 + 3 NA Intergenic MIRb|SINE|MIR -180169 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 404.5-20 chr6 85779090 85779238 + 3 NA Intergenic L1M1|LINE|L1 -100431 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 359-32 chr3 101604189 101604341 + 3 NA Intergenic AluSx1|SINE|Alu 30085 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 787.5-9 chrX 92184952 92185422 + 3 NA intron (NM_001168362, intron 2 of 4) AluJo|SINE|Alu 349726 NM_001168360 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 462-40 chr9 102279044 102279223 + 3 NA Intergenic Intergenic -240504 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 341-9 chr13 30913278 30913449 + 3 NA intron (NM_032849, intron 1 of 4) AluJr|SINE|Alu 7092 NM_032849 84935 Hs.147880 NM_032849 ENSG00000102802 MEDAG AWMS3|C13orf33|MEDA-4|MEDA4|hAWMS3 mesenteric estrogen dependent adipogenesis protein-coding 411-3 chr1 150930150 150930389 + 3 NA intron (NM_001243491, intron 3 of 8) intron (NM_001243491, intron 3 of 8) 3906 NM_012432 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated histone lysine methyltransferase 1 protein-coding 536-4 chr11 47295077 47295383 + 3 NA intron (NM_130476, intron 20 of 32) AluJb|SINE|Alu -23120 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 777-3 chr14 46549401 46550065 + 3 NA Intergenic L1MA8|LINE|L1 78374 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 371-35 chr9 128159909 128160087 + 3 NA promoter-TSS (NM_024112) promoter-TSS (NM_024112) -267 NM_024112 79095 Hs.522412 NM_024112 ENSG00000171159 C9orf16 EST00098 chromosome 9 open reading frame 16 protein-coding 668-4 chr12 20880324 20880668 + 3 NA intron (NM_019844, intron 11 of 15) MIR3|SINE|MIR 57948 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 610.5-3 chr15 26284905 26285183 + 3 NA Intergenic L1MA9|LINE|L1 169231 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 486-2 chr1 173296344 173296719 + 3 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -89200 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 429-7 chr10 54799620 54799878 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 1482 NM_001354430 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 485-2 chr10 9171794 9172041 + 3 NA Intergenic Intergenic -103696 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 343.5-17 chr2 117319562 117319774 + 3 NA Intergenic L1MEh|LINE|L1 -495023 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 601.5-13 chr5 22561309 22561708 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 291836 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 296-38 chr8 143939960 143940131 + 3 NA promoter-TSS (NM_201384) promoter-TSS (NM_201384) -448 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 204-17 chr5 35810968 35811065 + 3 NA intron (NM_024867, intron 36 of 36) intron (NM_024867, intron 36 of 36) -45875 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 473.5-9 chr22 35220439 35220648 + 3 NA intron (NR_126356, intron 1 of 5) L3|LINE|CR1 10513 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 350-31 chr5 180081746 180081938 + 3 NA Intergenic L1ME4c|LINE|L1 -10083 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 457-30 chr7 77952977 77953163 + 3 NA intron (NM_020432, intron 15 of 16) L2b|LINE|L2 112940 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 528 chr1 23489821 23490123 + 3 NA Intergenic MER41B|LTR|ERV1 -5793 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 381 chr1 45452401 45452580 + 3 NA intron (NM_001320800, intron 1 of 9) intron (NM_001320800, intron 1 of 9) 38673 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 337.5-30 chr8 127251455 127251695 + 3 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 6938 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 655-9 chr20 44239384 44239745 + 3 NA Intergenic Intergenic -7535 NM_001256738 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 749.5-7 chr6 44500091 44500633 + 3 NA Intergenic L2b|LINE|L2 51519 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 761-4 chr2 153888228 153888643 + 3 NA intron (NM_052917, intron 1 of 12) intron (NM_052917, intron 1 of 12) 16513 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 361-16 chr16 50862050 50862194 + 3 NA Intergenic Intergenic -16651 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 575-6 chr2 16961076 16961308 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -295358 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 497 chr1 29431905 29432179 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -81928 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 795-7 chr8 97060571 97060960 + 3 NA intron (NM_016134, intron 6 of 7) intron (NM_016134, intron 6 of 7) 217163 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 606-12 chr8 40286612 40286987 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 56564 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 501-20 chr5 107797694 107797920 + 3 NA Intergenic Intergenic -126870 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 597.5-6 chr4 65647355 65647577 + 3 NA intron (NM_001281767, intron 1 of 16) intron (NM_001281767, intron 1 of 16) 22022 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 313-11 chr12 109778040 109778253 + 3 NA Intergenic MER113|DNA|hAT-Charlie -4659 NR_026662 84983 Hs.675961 NM_032897 ENSG00000255650 FAM222A-AS1 - FAM222A antisense RNA 1 ncRNA 486 chr1 51369594 51369792 + 3 NA intron (NM_001159969, intron 9 of 12) intron (NM_001159969, intron 9 of 12) -24577 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 397.5-19 chr20 56603109 56603330 + 3 NA Intergenic Intergenic 25656 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 465-8 chr10 4222083 4222295 + 3 NA intron (NR_108040, intron 2 of 2) intron (NR_108040, intron 2 of 2) 21723 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 726-4 chr16 65721076 65721514 + 3 NA Intergenic Intergenic -144995 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 435-29 chr5 56626299 56626684 + 3 NA Intergenic L1PA14|LINE|L1 -20235 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 852-5 chr17 64189811 64190400 + 3 NA intron (NM_018469, intron 4 of 11) intron (NM_018469, intron 4 of 11) 40629 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 474-23 chr5 8637273 8637508 + 3 NA Intergenic Intergenic 176465 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 451-28 chr8 134485459 134485675 + 3 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -112504 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 398.5-13 chr21 14862649 14862781 + 3 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 55953 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 647-9 chr2 40099301 40099697 + 3 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 181865 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 457.5-25 chr6 98332880 98333132 + 3 NA Intergenic L2b|LINE|L2 308475 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 578-23 chr6 38495223 38495664 + 3 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 13847 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 353-10 chr13 60032211 60032368 + 3 NA intron (NR_109838, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR 18986 NR_051993 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 461.5-11 chr2 190856104 190856327 + 3 NA Intergenic AluY|SINE|Alu -24606 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 435-31 chr5 151119686 151119884 + 3 NA intron (NM_001193544, intron 16 of 24) L1ME4a|LINE|L1 21899 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 472-20 chr5 149622504 149622749 + 3 NA intron (NM_001001669, intron 9 of 12) MIR|SINE|MIR 41128 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 391-18 chr3 94843381 94843587 + 3 NA Intergenic Intergenic -94779 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 524-4 chr13 54481364 54481619 + 3 NA Intergenic Intergenic -169443 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 451-4 chr10 49532224 49532515 + 3 NA intron (NM_001277058, intron 2 of 5) intron (NM_001277058, intron 2 of 5) 6752 NM_000124 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 616.5-13 chr4 92837646 92838104 + 3 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 533476 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 517-10 chr2 228527239 228527481 + 3 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 84035 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 1021-2 chr20 54501723 54502255 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 26396 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 516.5-12 chr7 38799211 38799427 + 3 NA intron (NM_014396, intron 7 of 28) intron (NM_014396, intron 7 of 28) 109872 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 395.5-2 chr10 99662414 99662589 + 3 NA intron (NM_001349962, intron 4 of 13) L1MEc|LINE|L1 2872 NM_001349963 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 724.5-9 chrX 40699364 40699693 + 3 NA intron (NM_004229, intron 12 of 30) intron (NM_004229, intron 12 of 30) -35868 NM_001289773 100873985 Hs.460579 NM_001289773 MED14OS MED14-AS1 MED14 opposite strand protein-coding 360-10 chr10 64516931 64517157 + 3 NA Intergenic Intergenic -308484 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 311.5-12 chr11 30453250 30453353 + 3 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 127192 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 803-4 chr14 50402636 50403139 + 3 NA Intergenic AluSz|SINE|Alu -5589 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 1119 chr10 10235359 10236005 + 3 NA Intergenic MIRb|SINE|MIR 176960 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 567-21 chr8 112811802 112812115 + 3 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 168465 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 261-14 chr21 31063719 31063852 + 3 NA Intergenic Intergenic -25309 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 510-15 chr3 157603746 157604067 + 3 NA Intergenic Intergenic 60562 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 508.5 chr1 102300246 102300569 + 3 NA Intergenic Intergenic -303173 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 560-10 chr20 19152647 19152972 + 3 NA Intergenic L1MC2|LINE|L1 -59833 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 859.5 chr11 18511506 18511925 + 3 NA intron (NM_006292, intron 4 of 9) L1MB7|LINE|L1 15227 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 252-28 chr7 53918544 53918654 + 3 NA Intergenic Intergenic -106668 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 532.5-7 chr17 55456533 55456784 + 3 NA Intergenic Intergenic -34823 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 658-3 chr13 47100677 47101108 + 3 NA Intergenic Intergenic -203816 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 445-16 chr3 47263747 47264019 + 3 NA intron (NM_001134878, intron 10 of 21) intron (NM_001134878, intron 10 of 21) -13274 NR_145712 109617025 NR_145712 SNORD13J - small nucleolar RNA, C/D box 13J snoRNA 464-21 chr6 10953102 10953257 + 3 NA intron (NR_125851, intron 1 of 2) intron (NR_125851, intron 1 of 2) 910 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 804.5-2 chr12 49168822 49169298 + 3 NA Intergenic AluJb|SINE|Alu 20020 NM_006009 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 510-19 chr6 41944698 41945035 + 3 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) -3018 NM_001287427 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 495-3 chr11 88809406 88809659 + 3 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 238540 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 267-42 chr5 80643824 80643931 + 3 NA intron (NM_000791, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 7131 NM_001190470 100462981 NM_001190470 MTRNR2L2 HN2 MT-RNR2 like 2 protein-coding 393-30 chr5 140783767 140784062 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -2222 NM_031410 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 529.5-8 chr14 72593593 72593949 + 3 NA Intergenic Intergenic 76951 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 581-7 chr2 118871928 118872261 + 3 NA Intergenic L2c|LINE|L2 -23911 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 721.5-4 chr17 34065481 34065908 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 91112 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 290.5-21 chr4 134246917 134247024 + 3 NA Intergenic Intergenic -45181 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 317-14 chr2 144857195 144857325 + 3 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 189293 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 710 chr1 228357138 228357395 + 3 NA intron (NM_052843, intron 80 of 80) intron (NM_052843, intron 80 of 80) 39843 NR_106800 102465444 NR_106800 ENSG00000284311 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 663.5-6 chr8 125887563 125888168 + 3 NA Intergenic MIR|SINE|MIR 63332 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 339-21 chr21 28336074 28336279 + 3 NA Intergenic Intergenic -107509 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 469-19 chr3 108552031 108552301 + 3 NA intron (NM_020890, intron 20 of 20) intron (NM_020890, intron 20 of 20) -22844 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 503 chr10 39307626 39307911 + 3 NA Intergenic ALR/Alpha|Satellite|centr 611172 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 668.5-3 chr2 43202918 43203535 + 3 NA Intergenic AluJb|SINE|Alu 23380 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 574-10 chr2 191001663 191001899 + 3 NA intron (NM_007315, intron 5 of 24) intron (NM_007315, intron 5 of 24) 12469 NM_007315 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 720.5-7 chr7 11861932 11862228 + 3 NA Intergenic Intergenic -29882 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 487-23 chr20 49647965 49648238 + 3 NA intron (NM_004776, intron 2 of 8) HAL1|LINE|L1 65777 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 647-11 chr22 28093169 28093570 + 3 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -172757 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 304.5-14 chr12 131386753 131386905 + 3 NA Intergenic Intergenic 39359 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 689.5-5 chr4 147512104 147512365 + 3 NA intron (NM_001166055, intron 2 of 5) intron (NM_001166055, intron 2 of 5) 31137 NM_001354797 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 325.5-35 chr9 28621004 28621148 + 3 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 98229 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 316-32 chr5 66816760 66816879 + 3 NA intron (NM_001290228, intron 3 of 4) MER5B|DNA|hAT-Charlie -11954 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 743-5 chr5 107425575 107425934 + 3 NA intron (NM_001962, intron 2 of 4) intron (NM_001962, intron 2 of 4) 245183 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 535-10 chr17 6609622 6609877 + 3 NA intron (NR_147088, intron 8 of 17) intron (NR_147088, intron 8 of 17) 30962 NM_001351225 9851 Hs.28070 NM_014804 ENSG00000198920 KIAA0753 MNR|OFIP KIAA0753 protein-coding 556.5-20 chr8 90100586 90100886 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -17857 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 343-14 chr17 44644294 44644449 + 3 NA Intergenic AluJo|SINE|Alu 5978 NR_110661 101927017 Hs.560554 NR_110661 ENSG00000266979 LINC01180 - long intergenic non-protein coding RNA 1180 ncRNA 864-5 chr21 20862905 20863320 + 3 NA Intergenic Intergenic -60004 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 829.5-4 chr2 173613887 173614381 + 3 NA Intergenic L1ME4b|LINE|L1 259262 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 489-3 chr10 57330704 57331310 + 3 NA Intergenic Intergenic -26448 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 595.5-2 chr1 221881800 221882102 + 3 NA Intergenic Intergenic -41285 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 480-13 chr16 11215802 11216128 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 40217 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 529-17 chr4 96167237 96167587 + 3 NA Intergenic Intergenic -143291 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 477-26 chr8 132128991 132129301 + 3 NA 3' UTR (NM_004519, exon 15 of 15) 3' UTR (NM_004519, exon 15 of 15) -23881 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 636-15 chr21 25343269 25343546 + 3 NA Intergenic Intergenic 88294 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 607-4 chr1 114848815 114849155 + 3 NA Intergenic L2a|LINE|L2 -5818 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 522-14 chr17 57626270 57626532 + 3 NA intron (NM_001322250, intron 9 of 13) intron (NM_001322250, intron 9 of 13) -17989 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 384-9 chr14 45997433 45997620 + 3 NA Intergenic Intergenic -66633 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 745-2 chr10 52713198 52713632 + 3 NA intron (NR_155748, intron 1 of 2) L1MDa|LINE|L1 41989 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 485-16 chr8 77230605 77230855 + 3 NA Intergenic AluSz6|SINE|Alu -219967 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 395-5 chr14 70834749 70834967 + 3 NA Intergenic Intergenic -25345 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 423-40 chr9 71643832 71644001 + 3 NA Intergenic Intergenic 124597 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 254-14 chr2 105267777 105267935 + 3 NA intron (NM_001142621, intron 11 of 11) intron (NM_001142621, intron 11 of 11) 26113 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 379-10 chr10 44863459 44863711 + 3 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -47731 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 273.5-31 chr8 65988344 65988479 + 3 NA Intergenic Intergenic -26567 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 565-8 chr3 768915 769163 + 3 NA intron (NR_110118, intron 2 of 3) intron (NR_110118, intron 2 of 3) 176934 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 445-35 chr9 29346153 29346366 + 3 NA Intergenic L1M8|LINE|L1 -132658 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 194.5-28 chr5 164331505 164331569 + 3 NA Intergenic Intergenic 135865 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 517.5-13 chr5 155642615 155642893 + 3 NA Intergenic L2b|LINE|L2 628999 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 414-15 chr2 35091612 35091754 + 3 NA Intergenic Intergenic -379722 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 248-9 chr2 54152945 54153110 + 3 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 29744 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 356-20 chr2 62566571 62566762 + 3 NA Intergenic Intergenic -60471 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 291-19 chr4 137603280 137603486 + 3 NA TTS (NR_146553) TTS (NR_146553) 57652 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 307-20 chr20 41727020 41727129 + 3 NA Intergenic MIRb|SINE|MIR -108697 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 307-17 chr2 143613484 143613594 + 3 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -323528 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 402-17 chr2 29492931 29493095 + 3 NA intron (NM_004304, intron 4 of 28) L3|LINE|CR1 -17636 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 444-5 chr10 65374797 65375084 + 3 NA Intergenic L1MCc|LINE|L1 -196485 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 369-37 chr7 68600491 68600733 + 3 NA Intergenic AluJo|SINE|Alu 580359 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 463.5-24 chr8 31344311 31344508 + 3 NA Intergenic Intergenic -295343 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 457.5-27 chr7 11172274 11172525 + 3 NA Intergenic L2b|LINE|L2 198527 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 564.5-10 chr3 133263804 133264028 + 3 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -6795 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 864-4 chr2 149915983 149916350 + 3 NA Intergenic Intergenic -56975 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 572-5 chr18 7577546 7577868 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 10391 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 680-4 chr3 124837910 124838289 + 3 NA intron (NM_001354766, intron 5 of 13) L1MC5|LINE|L1 49266 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 553.5-10 chr2 241059429 241059748 + 3 NA intron (NM_001080437, intron 16 of 31) L1ME3F|LINE|L1 42699 NR_138463 130916 Hs.159556 NM_182501 ENSG00000122085 MTERF4 MTERFD2 mitochondrial transcription termination factor 4 protein-coding 513-30 chr7 144944022 144944350 + 3 NA Intergenic Intergenic -108133 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 652.5-2 chr17 59126738 59127068 + 3 NA intron (NM_182620, intron 2 of 3) L1MB3|LINE|L1 10969 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 431.5-13 chr3 3690132 3690479 + 3 NA Intergenic L3|LINE|CR1 -109126 NM_001324188 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 464.5-10 chr15 67158718 67158917 + 3 NA intron (NM_001145103, intron 1 of 8) intron (NM_001145103, intron 1 of 8) -7338 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 652-8 chr2 29541603 29542122 + 3 NA intron (NM_004304, intron 3 of 28) LTR49|LTR|ERV1 -66485 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 562-6 chr2 118729980 118730267 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 118060 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 572-2 chr1 103434766 103435054 + 3 NA intron (NM_001347930, intron 1 of 4) L1MCa|LINE|L1 90601 NM_001347930 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 583-2 chr10 37874956 37875252 + 3 NA Intergenic AluSx1|SINE|Alu -17001 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 415-28 chr6 161231887 161232160 + 3 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) 42038 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 502-11 chr20 262781 262993 + 3 NA Intergenic L1M5|LINE|L1 5163 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 561-24 chr7 51872709 51872967 + 3 NA Intergenic L1PA10|LINE|L1 -479582 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 760 chr1 86238130 86238606 + 3 NA Intergenic Intergenic -81384 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 434-7 chr16 81461984 81462299 + 3 NA intron (NM_198390, intron 1 of 20) intron (NM_198390, intron 1 of 20) 16971 NM_198390 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 429-11 chr16 73501079 73501281 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 114375 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 432-9 chr16 22755196 22755424 + 3 NA Intergenic Intergenic -58852 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 307-19 chr2 214401074 214401266 + 3 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -9884 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 423-27 chr4 63240052 63240214 + 3 NA Intergenic Intergenic -1078368 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 447-17 chr2 115433878 115434073 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 90160 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 652-12 chr4 57303494 57303920 + 3 NA Intergenic Intergenic -122165 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 283-7 chr10 74967589 74967701 + 3 NA intron (NM_001370135, intron 4 of 9) intron (NM_001370135, intron 4 of 9) -54088 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 252-21 chr5 28238738 28238861 + 3 NA Intergenic Intergenic 48866 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 857-9 chrX 101382592 101383120 + 3 NA intron (NM_001287345, intron 1 of 16) intron (NM_001287345, intron 1 of 16) 3368 NM_001287345 695 Hs.159494 NM_000061 ENSG00000010671 BTK AGMX1|AT|ATK|BPK|IGHD3|IMD1|PSCTK1|XLA Bruton tyrosine kinase protein-coding 656-10 chr7 73347167 73347525 + 3 NA intron (NM_001362789, intron 7 of 7) MIR|SINE|MIR 19185 NM_001362789 8468 Hs.661266 NM_003602 ENSG00000077800 FKBP6 FKBP36 FKBP prolyl isomerase 6 protein-coding 444-27 chr7 69676014 69676215 + 3 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 77639 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 607-21 chr3 181173286 181173650 + 3 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) -1676 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 471-24 chr3 12907960 12908124 + 3 NA intron (NM_001134382, intron 12 of 13) intron (NM_001134382, intron 12 of 13) -22831 NR_136189 105376955 Hs.561179 NR_136189 ENSG00000232746 LINC02022 - long intergenic non-protein coding RNA 2022 ncRNA 480-5 chr11 68463762 68464047 + 3 NA intron (NM_001352362, intron 2 of 24) MER20|DNA|hAT-Charlie 3152 NM_001164161 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 857-2 chr11 112993986 112994435 + 3 NA intron (NM_181351, intron 1 of 18) HAL1|LINE|L1 -30750 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 515-14 chr3 36471914 36472135 + 3 NA intron (NM_001292049, intron 2 of 8) THE1A-int|LTR|ERVL-MaLR 91537 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 370-39 chrX 22451867 22452091 + 3 NA intron (NR_073010, intron 4 of 11) L1MA4A|LINE|L1 179066 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 474-14 chr2 66955251 66955584 + 3 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -32927 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 496-20 chr4 117162412 117162858 + 3 NA Intergenic LTR1A2|LTR|ERV1 -77059 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 713-6 chr7 53830586 53830974 + 3 NA Intergenic L1M5|LINE|L1 -18849 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 584.5-8 chr3 165774289 165774483 + 3 NA intron (NR_137635, intron 2 of 2) AluSq2|SINE|Alu 63037 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 810-2 chr3 109695260 109695598 + 3 NA Intergenic L1PA16|LINE|L1 92601 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 346-15 chr12 63453927 63454068 + 3 NA Intergenic L1M5|LINE|L1 214496 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 416 chr1 28760083 28760255 + 3 NA intron (NM_001173128, intron 5 of 5) Tigger3b|DNA|TcMar-Tigger 23229 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 472-9 chr2 74177625 74177852 + 3 NA intron (NM_001317112, intron 1 of 4) intron (NM_001317112, intron 1 of 4) 576 NM_001317111 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 551.5-7 chr5 25004669 25004936 + 3 NA Intergenic Intergenic -164219 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 582.5-6 chr2 102685139 102685709 + 3 NA intron (NM_003048, intron 5 of 11) L2a|LINE|L2 51464 NM_001322081 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 417-44 chr9 4151766 4151986 + 3 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 307 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 559.5-12 chr2 192750467 192750750 + 3 NA intron (NR_152587, intron 1 of 3) intron (NR_152587, intron 1 of 3) 763 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 1053 chr8 120131460 120131972 + 3 NA intron (NM_021110, intron 1 of 47) L1PA16|LINE|L1 6614 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 302-3 chr1 191840248 191840396 + 3 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -318140 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 465-35 chr8 96196334 96196586 + 3 NA Intergenic Intergenic -35654 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 561-18 chr3 83002330 83002534 + 3 NA Intergenic L2|LINE|L2 1016290 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 693 chr1 37737642 37738068 + 3 NA intron (NM_001099439, intron 5 of 16) L1PA6|LINE|L1 27265 NM_001099439 284656 Hs.129435 NM_173641 ENSG00000183317 EPHA10 - EPH receptor A10 protein-coding 387-24 chr3 152118816 152119018 + 3 NA Intergenic AluJo|SINE|Alu 86512 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 522-7 chr11 44174946 44175216 + 3 NA intron (NM_207122, intron 8 of 13) L2c|LINE|L2 78884 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 310.5-41 chr7 80463434 80463578 + 3 NA intron (NM_001102386, intron 5 of 7) L2a|LINE|L2 48558 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 489-18 chr20 25509778 25509960 + 3 NA intron (NM_025176, intron 5 of 23) intron (NM_025176, intron 5 of 23) 75662 NM_025176 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 387-30 chr6 39658871 39659014 + 3 NA intron (NM_001289020, intron 3 of 21) Plat_L3|LINE|CR1 66466 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 651.5-2 chr19 30983854 30984080 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -183543 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 675-4 chr2 42658429 42658760 + 3 NA intron (NM_001330443, intron 7 of 16) L1ME3A|LINE|L1 89962 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 597-21 chr6 131918850 131919354 + 3 NA Intergenic L1PA13|LINE|L1 32270 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 526-12 chr3 111572983 111573250 + 3 NA intron (NM_001318889, intron 3 of 7) intron (NM_001318889, intron 3 of 7) 22230 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 528-21 chr20 5209469 5209731 + 3 NA Intergenic L1M4|LINE|L1 82592 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 654-7 chr2 14583723 14584021 + 3 NA Intergenic Intergenic -48845 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 690-4 chr16 78341993 78342332 + 3 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 242508 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 377.5-23 chr9 86212574 86212712 + 3 NA Intergenic L1MEg|LINE|L1 43390 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 962-2 chr2 157782051 157782718 + 3 NA intron (NM_001111067, intron 3 of 10) intron (NM_001111067, intron 3 of 10) 56246 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 565.5-7 chr20 44430314 44430570 + 3 NA 3' UTR (NM_001030003, exon 10 of 10) 3' UTR (NM_001030003, exon 10 of 10) 20115 NR_109893 101927242 Hs.143307 NR_109893 ENSG00000168746 LINC01430 - long intergenic non-protein coding RNA 1430 ncRNA 687-8 chr2 52914387 52914739 + 3 NA Intergenic Intergenic -211948 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 300-9 chr18 77452233 77452406 + 3 NA Intergenic Intergenic 202471 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 466.5-25 chr8 131805539 131805802 + 3 NA Intergenic Intergenic -98423 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 600.5 chr11 6456184 6456710 + 3 NA exon (NM_033278, exon 6 of 12) exon (NM_033278, exon 6 of 12) -15460 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 441-6 chr10 26537198 26537460 + 3 NA intron (NM_019043, intron 10 of 14) intron (NM_019043, intron 10 of 14) 41978 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 789.5 chr14 49627221 49627566 + 3 NA intron (NM_001083908, intron 1 of 1) intron (NM_001083908, intron 1 of 1) 6594 NM_002408 4247 Hs.93338 NM_002408 ENSG00000168282 MGAT2 CDG2A|CDGS2|GLCNACTII|GNT-II|GNT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 346-9 chr11 20973308 20973469 + 3 NA intron (NM_201551, intron 12 of 18) AluSp|SINE|Alu 303802 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 632-13 chr8 127227180 127227576 + 3 NA Intergenic MIR|SINE|MIR -8110 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 630-2 chr1 234330827 234331202 + 3 NA Intergenic Intergenic 24547 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 469.5 chr1 157262619 157262920 + 3 NA Intergenic Intergenic -124178 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 802.5-3 chr3 5153856 5154365 + 3 NA intron (NM_018184, intron 1 of 6) L1MEf|LINE|L1 31818 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 452-26 chr6 98964679 98964858 + 3 NA Intergenic Intergenic -16762 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 640.5-7 chr2 41191702 41192207 + 3 NA Intergenic Intergenic -679519 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 439.5-18 chr22 49718983 49719188 + 3 NA Intergenic Intergenic -61566 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 677-6 chr2 123420514 123420807 + 3 NA Intergenic Intergenic -347179 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 474-10 chr14 79225890 79226124 + 3 NA intron (NR_073547, intron 14 of 20) MLT1E2|LTR|ERVL-MaLR 26025 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 717-5 chr15 58885160 58885616 + 3 NA intron (NR_135042, intron 17 of 18) intron (NR_135042, intron 17 of 18) 48291 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 219-28 chr5 43126866 43126957 + 3 NA intron (NM_001330705, intron 3 of 5) L1MD2|LINE|L1 5346 NM_001330717 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 399-2 chr1 78595945 78596136 + 3 NA Intergenic L1M5|LINE|L1 -24408 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 517.5-4 chr10 113342806 113343056 + 3 NA Intergenic Intergenic -207900 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 475-2 chr10 56261669 56261880 + 3 NA Intergenic MER20|DNA|hAT-Charlie 99485 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 417-39 chr8 36911270 36911438 + 3 NA intron (NM_001031836, intron 22 of 26) intron (NM_001031836, intron 22 of 26) 126980 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 261.5-19 chr2 80653474 80653601 + 3 NA Intergenic L1MB4|LINE|L1 340158 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 756-8 chr2 212376017 212376369 + 3 NA intron (NM_001042599, intron 1 of 26) HSMAR2|DNA|TcMar-Mariner 50167 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 388.5-14 chr3 174135919 174136062 + 3 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -215194 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 370-32 chr8 79969169 79969408 + 3 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 60971 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 444.5-22 chr9 90039303 90039519 + 3 NA intron (NR_038882, intron 1 of 3) AluSz|SINE|Alu 2088 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 634-7 chr17 54804225 54804637 + 3 NA Intergenic Intergenic -96260 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 336-15 chr13 47816058 47816242 + 3 NA Intergenic Intergenic 116472 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 801-6 chr17 64099245 64099710 + 3 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 30667 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 510.5-5 chr15 78295137 78295323 + 3 NA intron (NM_001303248, intron 2 of 8) intron (NM_001303248, intron 2 of 8) 4379 NM_001303247 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 616.5-11 chr3 111149155 111149420 + 3 NA intron (NM_001243288, intron 7 of 8) L1M5|LINE|L1 77471 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 438-15 chr2 15808853 15809148 + 3 NA Intergenic Intergenic -111399 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 457.5-26 chr6 145808201 145808418 + 3 NA intron (NM_001348092, intron 1 of 2) L2b|LINE|L2 6486 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 466.5 chr1 68538553 68538793 + 3 NA TTS (NR_110671) TTS (NR_110671) -41591 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 553.5-12 chr4 62875352 62875612 + 3 NA Intergenic L1MA2|LINE|L1 -713717 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 440-31 chr5 103462791 103463023 + 3 NA Intergenic L2b|LINE|L2 79078 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 592-15 chr8 121324572 121325076 + 3 NA Intergenic Intergenic -314522 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 864-6 chr4 66162323 66162699 + 3 NA Intergenic Intergenic -114313 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 658.5-5 chr2 127869020 127869316 + 3 NA intron (NM_001199140, intron 6 of 7) intron (NM_001199140, intron 6 of 7) -11013 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 498-2 chr1 44259795 44260001 + 3 NA intron (NM_001301698, intron 6 of 7) (TAGA)n|Simple_repeat|Simple_repeat -7339 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 677.5-4 chr7 17775062 17775341 + 3 NA Intergenic Intergenic 165293 NM_001350867 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 298-25 chr5 149704456 149704582 + 3 NA Intergenic L1M4|LINE|L1 -25791 NM_001172698 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 728-6 chr6 41984764 41985092 + 3 NA intron (NM_001136017, intron 1 of 4) L1MA9|LINE|L1 -43080 NM_001287427 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 427-2 chr1 84749459 84749616 + 3 NA Intergenic Intergenic -59069 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 516-23 chr3 197973840 197974024 + 3 NA intron (NM_033029, intron 1 of 15) intron (NM_033029, intron 1 of 15) 13715 NR_026787 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 574-6 chr13 87138538 87138869 + 3 NA Intergenic MER92B|LTR|ERV1 226783 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 732-9 chr22 34671429 34671859 + 3 NA Intergenic L1M5|LINE|L1 326272 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 898-2 chr2 98424175 98424704 + 3 NA Intergenic AluJr|SINE|Alu -20148 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 403-37 chr8 74941577 74941805 + 3 NA Intergenic MLT2C2|LTR|ERVL -42814 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 655.5-3 chr12 1687735 1688088 + 3 NA Intergenic Intergenic -3159 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 541-4 chr13 87925721 87926037 + 3 NA Intergenic Charlie10|DNA|hAT-Charlie -115359 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 610-15 chr7 55906743 55907112 + 3 NA intron (NM_182633, intron 2 of 6) LTR49-int|LTR|ERV1 19471 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 690-7 chr19 39193829 39194118 + 3 NA Intergenic (CCT)n|Simple_repeat|Simple_repeat -2991 NM_001001414 342897 Hs.726934 NM_001001414 ENSG00000188505 NCCRP1 FBXO50|NCCRP-1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding 450-14 chr3 103824352 103824511 + 3 NA Intergenic Intergenic -300315 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 730.5 chr13 28620401 28620872 + 3 NA Intergenic Intergenic -38494 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 607-15 chr18 47777851 47778187 + 3 NA Intergenic MER1A|DNA|hAT-Charlie 152640 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 500.5-4 chr11 90960770 90961242 + 3 NA Intergenic L1MA7|LINE|L1 -91804 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 1152 chr10 59253529 59254181 + 3 NA intron (NM_001347852, intron 11 of 12) intron (NM_001347852, intron 11 of 12) 76388 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 454-5 chr12 131971079 131971267 + 3 NA intron (NM_015409, intron 2 of 52) AluJr|SINE|Alu 21231 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 575 chr10 92761951 92762299 + 3 NA Intergenic Intergenic -64706 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 809.5-5 chr8 139234505 139235049 + 3 NA Intergenic MER101-int|LTR|ERV1 -320736 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 418-2 chr1 156459629 156459864 + 3 NA Intergenic AluY|SINE|Alu -30198 NM_001320453 10485 Hs.380027 NM_006365 ENSG00000125462 C1orf61 CROC4 chromosome 1 open reading frame 61 protein-coding 290-35 chr9 35775976 35776072 + 3 NA Intergenic Intergenic -16385 NM_003995 4882 Hs.78518 NM_000907 ENSG00000159899 NPR2 AMDM|ANPRB|ANPb|ECDM|GUC2B|GUCY2B|NPRB|NPRBi|SNSK natriuretic peptide receptor 2 protein-coding 1051.5-2 chr14 69971570 69972164 + 3 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -6266 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 451.5-22 chr8 117785153 117785360 + 3 NA Intergenic L1MEf|LINE|L1 135657 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 364-7 chr10 113277642 113277835 + 3 NA Intergenic L2c|LINE|L2 148467 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 362-27 chr6 52532344 52532533 + 3 NA intron (NM_012288, intron 2 of 10) intron (NM_012288, intron 2 of 10) 44622 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 454.5-22 chr6 90703202 90703403 + 3 NA Intergenic Intergenic -116230 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 350.5 chr1 160424373 160424662 + 3 NA intron (NM_020335, intron 7 of 7) intron (NM_020335, intron 7 of 7) 23953 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 879-3 chr8 119407944 119408249 + 3 NA Intergenic L1PA16|LINE|L1 -8350 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 498-25 chr6 112867579 112867891 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 520405 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 964.5-4 chr8 93256279 93256694 + 3 NA Intergenic L1MA4|LINE|L1 -89636 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 391.5-35 chr6 158639980 158640181 + 3 NA intron (NM_001291602, intron 1 of 3) intron (NM_001291602, intron 1 of 3) 4663 NM_001291603 6993 Hs.445999 NM_006519 ENSG00000146425 DYNLT1 CW-1|TCTEL1|tctex-1 dynein light chain Tctex-type 1 protein-coding 667.5 chr12 27666947 27667325 + 3 NA intron (NM_003622, intron 12 of 29) intron (NM_003622, intron 12 of 29) -29311 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 525-19 chr4 89357850 89358199 + 3 NA Intergenic Intergenic -50224 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 725.5 chr1 201869641 201870155 + 3 NA intron (NM_018085, intron 17 of 23) intron (NM_018085, intron 17 of 23) 6525 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 491.5-6 chr13 75528301 75528572 + 3 NA intron (NM_203497, intron 3 of 4) intron (NM_203497, intron 3 of 4) 9436 NM_001287392 170622 Hs.508266 NM_203495 ENSG00000188243 COMMD6 Acrg COMM domain containing 6 protein-coding 394.5-6 chr14 67036842 67037083 + 3 NA intron (NM_001024218, intron 9 of 21) L1MB2|LINE|L1 -152478 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 414.5-4 chr10 78817641 78817782 + 3 NA Intergenic Intergenic 249737 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 302-25 chr5 120872076 120872222 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 340685 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 705-5 chr2 236823722 236824247 + 3 NA Intergenic Intergenic 232183 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 625-2 chr1 222929671 222930001 + 3 NA intron (NM_001369594, intron 1 of 7) intron (NM_001369594, intron 1 of 7) 1412 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 563-16 chr7 104295655 104295971 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -32843 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 442.5-18 chr4 39518827 39519002 + 3 NA intron (NM_001184701, intron 1 of 10) intron (NM_001184701, intron 1 of 10) 8525 NM_003359 7358 Hs.572518 NM_003359 ENSG00000109814 UGDH GDH|UDP-GlcDH|UDPGDH|UGD UDP-glucose 6-dehydrogenase protein-coding 498-12 chr18 6913675 6914020 + 3 NA 3' UTR (NM_001366230, exon 18 of 18) 3' UTR (NM_001366230, exon 18 of 18) 16022 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 743-7 chr7 109506799 109507292 + 3 NA Intergenic Intergenic 453168 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 280-5 chr10 97130277 97130446 + 3 NA intron (NM_003061, intron 4 of 36) L1MB3|LINE|L1 27605 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 417-5 chr1 217685912 217686142 + 3 NA intron (NM_138796, intron 5 of 10) MER44A|DNA|TcMar-Tigger 54683 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 444.5-17 chr7 49668931 49669192 + 3 NA Intergenic Intergenic -104577 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 536.5-11 chr17 61469261 61469567 + 3 NA intron (NM_001321120, intron 5 of 8) (TGCCT)n|Simple_repeat|Simple_repeat 12926 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 469-3 chr10 121834109 121834448 + 3 NA intron (NM_001001976, intron 10 of 11) L2a|LINE|L2 93753 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 537-22 chr8 39980444 39980713 + 3 NA intron (NM_194294, intron 4 of 10) intron (NM_194294, intron 4 of 10) 45623 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 374-4 chr1 200944807 200944964 + 3 NA intron (NR_147176, intron 4 of 15) AluJr4|SINE|Alu 15941 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 377-20 chr21 15067529 15067743 + 3 NA Intergenic Intergenic -2636 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 592-14 chr7 54983018 54983311 + 3 NA Intergenic L1ME3|LINE|L1 -35853 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 491-3 chr10 31482882 31483079 + 3 NA intron (NM_001323678, intron 2 of 6) intron (NM_001323678, intron 2 of 6) -83225 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 442.5-4 chr10 53877029 53877180 + 3 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -609126 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 501-14 chr4 64352551 64352817 + 3 NA intron (NM_001363796, intron 2 of 11) intron (NM_001363796, intron 2 of 11) 56766 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 805 chr17 793919 794316 + 3 NA Intergenic Intergenic 11764 NM_018146 55178 Hs.182729 NM_018146 ENSG00000171861 MRM3 RMTL1|RNMTL1 mitochondrial rRNA methyltransferase 3 protein-coding 391.5-8 chr12 67309979 67310146 + 3 NA exon (NM_001329675, exon 13 of 16) exon (NM_001329675, exon 13 of 16) 40704 NM_001329674 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 338.5-10 chr14 58688353 58688484 + 3 NA Intergenic L1MB7|LINE|L1 49581 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 300-30 chr8 59104200 59104417 + 3 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 14839 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 505-25 chr9 27163248 27163457 + 3 NA intron (NM_001290077, intron 2 of 21) L2b|LINE|L2 54211 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 528.5-13 chr3 132120223 132120694 + 3 NA Intergenic Intergenic -80852 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 392.5-13 chr17 31701643 31701773 + 3 NA Intergenic L1MA8|LINE|L1 126297 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 817 chr2 119791900 119792223 + 3 NA intron (NM_002830, intron 1 of 26) L1MB3|LINE|L1 32139 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 525.5-7 chr18 70183751 70183985 + 3 NA intron (NM_001318520, intron 10 of 47) AluJr|SINE|Alu 21819 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 401.5-15 chr2 67265238 67265585 + 3 NA intron (NR_110564, intron 2 of 4) intron (NR_110564, intron 2 of 4) -50092 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 422-26 chr6 112819942 112820213 + 3 NA Intergenic L2|LINE|L2 472747 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 943-5 chr7 139272467 139272911 + 3 NA intron (NM_173569, intron 9 of 17) AluSx|SINE|Alu 41452 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 217-7 chr14 84804254 84804342 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -467634 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 560-14 chr3 107370837 107371188 + 3 NA Intergenic Intergenic -6427 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 485-3 chr14 67337647 67337972 + 3 NA TTS (NM_015994) TTS (NM_015994) 21995 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 439-8 chr22 30949906 30950128 + 3 NA intron (NM_001303257, intron 4 of 25) intron (NM_001303257, intron 4 of 25) 18270 NM_001303257 22880 Hs.555918 NM_014941 ENSG00000133422 MORC2 CMT2Z|ZCW3|ZCWCC1 MORC family CW-type zinc finger 2 protein-coding 243-7 chr11 40113762 40113920 + 3 NA TTS (NR_047673) TTS (NR_047673) 179289 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 524-9 chr18 34214973 34215284 + 3 NA intron (NM_001353232, intron 1 of 9) L1MB2|LINE|L1 7342 NM_001353235 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 634.5-9 chr21 19569132 19569374 + 3 NA Intergenic L1ME1|LINE|L1 330502 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 415-18 chr2 102610485 102610718 + 3 NA Intergenic L2c|LINE|L2 -8952 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 457-8 chr17 45216782 45217160 + 3 NA intron (NR_147507, intron 2 of 2) L1ME4b|LINE|L1 4794 NR_147507 339192 Hs.560498 NR_147507 ENSG00000267121 LOC339192 - uncharacterized LOC339192 ncRNA 437-29 chr2 124103447 124103623 + 3 NA intron (NM_130773, intron 1 of 23) Tigger3|DNA|TcMar-Tigger 78248 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 378-19 chr4 41424214 41424446 + 3 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 63523 NM_014988 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 350-40 chr8 10664801 10664943 + 3 NA Intergenic AluSx1|SINE|Alu -2106 NR_036248 100422982 NR_036248 ENSG00000263762 MIR4286 mir-4286 microRNA 4286 ncRNA 766.5-8 chr5 155134950 155135404 + 3 NA Intergenic L3|LINE|CR1 121422 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 335-18 chr16 34586902 34587043 + 3 NA Intergenic Intergenic -205492 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 710-11 chr3 110870662 110871189 + 3 NA Intergenic Intergenic 199034 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 357-16 chr16 83809240 83809364 + 3 NA intron (NM_001537, intron 2 of 3) intron (NM_001537, intron 2 of 3) 1324 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 556.5-4 chr12 2482156 2482600 + 3 NA intron (NM_199460, intron 5 of 49).2 MIR|SINE|MIR 189842 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 467.5-19 chr7 68377349 68377582 + 3 NA Intergenic Intergenic 357212 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 294-9 chr10 88348148 88348320 + 3 NA intron (NM_018363, intron 5 of 6) intron (NM_018363, intron 5 of 6) 235084 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 560-12 chr21 27609866 27610095 + 3 NA Intergenic Intergenic -112399 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 385-42 chr8 138915875 138916033 + 3 NA Intergenic Intergenic -1913 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 674-8 chr7 109214517 109214778 + 3 NA Intergenic Intergenic -330060 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 1191.5 chr15 73072748 73073320 + 3 NA intron (NM_002499, intron 1 of 28) L2c|LINE|L2 20550 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 663-4 chr10 18611893 18612282 + 3 NA intron (NM_182543, intron 5 of 10) intron (NM_182543, intron 5 of 10) 39500 NM_001351118 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 182-8 chr2 59023823 59023889 + 3 NA intron (NR_033873, intron 10 of 13) intron (NR_033873, intron 10 of 13) -193852 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 643-11 chr2 181597030 181597385 + 3 NA intron (NR_027690, intron 2 of 11) intron (NR_027690, intron 2 of 11) 59898 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 300-24 chr6 6494021 6494147 + 3 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -94636 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 509-9 chr2 115353711 115353922 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 10001 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 533-4 chr10 36309159 36309424 + 3 NA Intergenic L1M4|LINE|L1 530989 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 556-7 chr15 60155673 60155983 + 3 NA Intergenic Intergenic 151517 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 265-30 chr5 63141823 63142032 + 2.5 NA Intergenic MLT2C1|LTR|ERVL 563108 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 346-27 chr3 100798163 100798437 + 2.5 NA intron (NM_001349332, intron 20 of 35) intron (NM_001349332, intron 20 of 35) 88758 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 659-9 chr3 143611114 143611573 + 2.5 NA intron (NM_173653, intron 6 of 15) HAL1|LINE|L1 237125 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 1108.5 chr5 35831687 35832395 + 2.5 NA Intergenic Intergenic -24850 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 611.5-8 chr6 66934338 66934627 + 2.5 NA Intergenic Intergenic -1120869 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 496-26 chr7 134520826 134521061 + 2.5 NA Intergenic MER68C|LTR|ERVL -6624 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 336-11 chr11 77311769 77311915 + 2.5 NA Intergenic Intergenic -10176 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 595-2 chr1 168470663 168471146 + 2.5 NA intron (NR_125956, intron 4 of 4) intron (NR_125956, intron 4 of 4) 24740 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 479-19 chr4 96792965 96793169 + 2.5 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 482364 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 341.5-17 chr2 144300895 144301065 + 2.5 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) -5667 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 429.5-15 chr3 116925273 116925481 + 2.5 NA intron (NR_121607, intron 1 of 1) AluSp|SINE|Alu 3946 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 391 chr1 177664801 177665080 + 2.5 NA Intergenic AluSq|SINE|Alu -35584 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 377.5-15 chr3 113235604 113235978 + 2.5 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 23675 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 952.5-2 chr12 123655281 123655822 + 2.5 NA intron (NM_001271867, intron 7 of 11) MIRb|SINE|MIR -15562 NM_024809 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 317-12 chr2 79498144 79498429 + 2.5 NA intron (NR_110289, intron 3 of 4) MLT1L-int|LTR|ERVL-MaLR 2558 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 422-9 chr14 47507939 47508268 + 2.5 NA intron (NM_001113498, intron 1 of 16) L3|LINE|CR1 -164857 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 389-15 chr15 98212271 98212541 + 2.5 NA Intergenic Intergenic 119152 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 498.5-2 chr11 9909353 9909850 + 2.5 NA intron (NM_030962, intron 16 of 39) AluYh3|SINE|Alu 70459 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 487.5-30 chr8 103694919 103695265 + 2.5 NA intron (NM_001348488, intron 3 of 25) L1M3e|LINE|L1 -124128 NM_001348504 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 371-13 chr2 32360585 32360879 + 2.5 NA intron (NM_016252, intron 1 of 73) intron (NM_016252, intron 1 of 73) 3704 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 625-7 chr2 66883703 66884194 + 2.5 NA Intergenic L1MA7|LINE|L1 -20488 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 374.5-15 chr2 30434877 30435128 + 2.5 NA Intergenic Intergenic -12244 NM_001304445 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 480-27 chr5 95971472 95971701 + 2.5 NA intron (NR_130776, intron 1 of 4) L1ME1|LINE|L1 9585 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 284-16 chr17 51535519 51535667 + 2.5 NA Intergenic Intergenic 100166 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 657-12 chr7 3561992 3562459 + 2.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 260973 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 311.5-25 chr2 142727233 142727440 + 2.5 NA Intergenic Intergenic -150328 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 452-23 chr4 43111060 43111393 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 217960 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 396.5 chr1 29351930 29352178 + 2.5 NA Intergenic MIRb|SINE|MIR -1940 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 406-27 chrX 102893375 102893594 + 2.5 NA intron (NR_146584, intron 14 of 18) MER3|DNA|hAT-Charlie -43788 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 783-5 chr15 77020205 77020699 + 2.5 NA intron (NR_135552, intron 3 of 11) intron (NR_135552, intron 3 of 11) 25326 NM_001321135 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 508.5-11 chr20 55418081 55418334 + 2.5 NA Intergenic Intergenic -4836 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 293-3 chr11 94598732 94599063 + 2.5 NA intron (NM_152431, intron 11 of 19) AluJo|SINE|Alu 31529 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 273-3 chr10 71394696 71394805 + 2.5 NA Intergenic MER58A|DNA|hAT-Charlie -2170 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 395.5-15 chr2 104428426 104428739 + 2.5 NA Intergenic Intergenic -5765 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 479-27 chrX 99316983 99317468 + 2.5 NA Intergenic Intergenic 1093048 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 513-34 chr9 6145450 6145732 + 2.5 NA Intergenic ERVL-B4-int|LTR|ERVL -69558 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 363-29 chr6 125592858 125593130 + 2.5 NA Intergenic MSTC|LTR|ERVL-MaLR -81359 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 772 chr11 66737151 66737709 + 2.5 NA Intergenic Intergenic -7306 NM_024650 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 199.5-16 chr19 51974800 51974916 + 2.5 NA intron (NM_021632, intron 1 of 4) Charlie2a|DNA|hAT-Charlie 11982 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 408-31 chr5 18756219 18756434 + 2.5 NA Intergenic Intergenic 949052 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 313.5-5 chr10 113990343 113990569 + 2.5 NA Intergenic Intergenic -53410 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 390.5-23 chr4 112882695 112883008 + 2.5 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 21864 NM_001354261 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 980.5-2 chr8 10451654 10452114 + 2.5 NA Intergenic L1MEg|LINE|L1 -22681 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 267-19 chr2 35153208 35153366 + 2.5 NA Intergenic L1PA16|LINE|L1 -318118 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 587-14 chr6 123973426 123973755 + 2.5 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 169725 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 368.5-26 chr5 130965459 130965613 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 199720 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 367.5-32 chr6 67647697 67647970 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -407518 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 478-22 chr3 44724133 44724556 + 2.5 NA TTS (NM_001134442) TTS (NM_001134442) -5262 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 850-2 chr12 88836176 88836764 + 2.5 NA Intergenic MIRc|SINE|MIR 183222 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 304.5-15 chr13 24033085 24033206 + 2.5 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) 53343 NR_104595 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 214-19 chr9 121851666 121851861 + 2.5 NA intron (NM_001139442, intron 8 of 8) intron (NM_001139442, intron 8 of 8) 108978 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 453.5-18 chr8 72892358 72892667 + 2.5 NA intron (NM_004770, intron 2 of 2) MIRb|SINE|MIR -116352 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 731-2 chr18 1145878 1146330 + 2.5 NA Intergenic Intergenic 213525 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 514.5-2 chr10 122555421 122555831 + 2.5 NA Intergenic L2a|LINE|L2 -5039 NM_017579 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 312-29 chr5 57963498 57963739 + 2.5 NA Intergenic L1PB4|LINE|L1 -64456 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 436-33 chr9 68784095 68784324 + 2.5 NA 3' UTR (NM_138333, exon 1 of 1) 3' UTR (NM_138333, exon 1 of 1) 4144 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 423.5-16 chr18 64954337 64954733 + 2.5 NA Intergenic Intergenic -694480 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 260-5 chr11 75730086 75730223 + 2.5 NA intron (NM_025098, intron 5 of 5) intron (NM_025098, intron 5 of 5) 12316 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 207.5-13 chr13 66943228 66943402 + 2.5 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) -34074 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 510.5-2 chr12 17705723 17706015 + 2.5 NA Intergenic L1MEg|LINE|L1 32570 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 447 chr1 12139916 12140196 + 2.5 NA intron (NM_001243, intron 14 of 14) intron (NM_001243, intron 14 of 14) -26887 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 514.5-6 chr17 34966316 34966612 + 2.5 NA Intergenic MIRc|SINE|MIR 4924 NM_052857 91603 Hs.413678 NM_052857 ENSG00000198783 ZNF830 CCDC16|OMCG1 zinc finger protein 830 protein-coding 597.5-2 chr12 117483463 117483925 + 2.5 NA intron (NM_173598, intron 16 of 19) Helitron3Na_Mam|RC|Helitron -121892 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 273.5-5 chr13 113283703 113283929 + 2.5 NA Intergenic AluSz|SINE|Alu -13423 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 611.5-6 chr4 20136825 20137234 + 2.5 NA Intergenic Intergenic -114876 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 563.5-4 chr20 58940876 58941224 + 2.5 NA Intergenic AluSx|SINE|Alu -40206 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 509-18 chr7 97339697 97340151 + 2.5 NA Intergenic Intergenic 223331 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 303.5-24 chr7 54634599 54634731 + 2.5 NA Intergenic L1M5|LINE|L1 77695 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 333.5-22 chr8 132341898 132342210 + 2.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 105208 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 447-6 chr12 49689084 49689463 + 2.5 NA intron (NM_001367835, intron 1 of 26) intron (NM_001367835, intron 1 of 26) 18132 NM_198900 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 352-6 chr14 68472506 68472894 + 2.5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 156087 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 511.5-4 chr10 63800192 63800434 + 2.5 NA Intergenic L1ME3C|LINE|L1 -278423 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 421.5-27 chr8 77680183 77680411 + 2.5 NA Intergenic Intergenic 229600 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 430-6 chr11 17674375 17674643 + 2.5 NA Intergenic Intergenic 22430 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 527.5-4 chr14 62602715 62603086 + 2.5 NA Intergenic L1MA8|LINE|L1 442558 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 446-17 chr16 22614174 22614442 + 2.5 NA Intergenic LTR53-int|LTR|ERVL 68610 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 395-21 chr4 44761809 44762090 + 2.5 NA Intergenic L1MB4|LINE|L1 -35315 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 258.5-19 chr5 24033634 24033808 + 2.5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 82373 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 445-2 chr11 110456600 110456800 + 2.5 NA intron (NM_004109, intron 2 of 3) AluSz|SINE|Alu 26752 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 444.5-14 chr4 66588237 66588435 + 2.5 NA Intergenic (ATTAT)n|Simple_repeat|Simple_repeat 311512 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 564.5-12 chr6 142408734 142409180 + 2.5 NA intron (NM_198569, intron 16 of 24) MIR3|SINE|MIR 106950 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 310-28 chr22 26202183 26202358 + 2.5 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 32796 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 261-7 chr15 55051408 55051684 + 2.5 NA Intergenic AluSx1|SINE|Alu -5201 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 472-17 chr5 56849566 56849915 + 2.5 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 34191 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 289-44 chrX 93626421 93626558 + 2.5 NA Intergenic Intergenic 47089 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 475-14 chr19 3959408 3959752 + 2.5 NA exon (NM_001348, exon 9 of 9) exon (NM_001348, exon 9 of 9) 1932 NR_030367 693222 NR_030367 ENSG00000283928 MIR637 MIRN637|hsa-mir-637 microRNA 637 ncRNA 624.5-15 chr8 136915744 136916157 + 2.5 NA Intergenic MER41-int|LTR|ERV1 385152 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 689.5-3 chr2 189534618 189535233 + 2.5 NA Intergenic Intergenic 45886 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 339.5-15 chr2 80518092 80518266 + 2.5 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 204800 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 615.5-2 chr10 12137676 12138032 + 2.5 NA intron (NM_001142627, intron 3 of 11) AluSz|SINE|Alu -7038 NR_039699 100616488 NR_039699 ENSG00000265653 MIR548AK - microRNA 548ak ncRNA 488.5-15 chr8 117186036 117186250 + 2.5 NA Intergenic Intergenic 51148 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 514.5 chr1 45631025 45631391 + 2.5 NA intron (NM_021639, intron 10 of 12) L1MC|LINE|L1 -7154 NM_001190182 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 400-26 chr6 161667303 161667544 + 2.5 NA intron (NM_004562, intron 7 of 11) L2c|LINE|L2 196446 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 356.5 chr1 57838099 57838340 + 2.5 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -22362 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 997 chr14 21599911 21600667 + 2.5 NA Intergenic AluSx|SINE|Alu -29545 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 352.5-5 chr10 18825138 18825434 + 2.5 NA Intergenic Intergenic 165855 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 569-3 chr10 126774284 126774603 + 2.5 NA Intergenic Intergenic -103933 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 405.5-9 chr2 133252278 133252560 + 2.5 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -13776 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 438.5-9 chr2 222005141 222005634 + 2.5 NA Intergenic L1MC1|LINE|L1 -292760 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 235-33 chr6 163539344 163539477 + 2.5 NA intron (NM_206853, intron 4 of 6) L2|LINE|L2 124692 NM_001301085 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 225.5-17 chr17 66568779 66568957 + 2.5 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -152014 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 285-34 chrX 69229367 69229553 + 2.5 NA Intergenic Plat_L3|LINE|CR1 49903 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 499-22 chr7 81990719 81991030 + 2.5 NA intron (NM_000722, intron 21 of 38) intron (NM_000722, intron 21 of 38) -18303 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 585.5-9 chr9 137227029 137227272 + 2.5 NA promoter-TSS (NM_001190228) promoter-TSS (NM_001190228) -416 NM_001190228 643596 Hs.730186 NM_001190228 ENSG00000233198 RNF224 - ring finger protein 224 protein-coding 612.5-7 chr2 97915559 97915968 + 2.5 NA intron (NM_015348, intron 2 of 40) L1MD2|LINE|L1 80185 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 502.5-15 chr9 26747555 26748007 + 2.5 NA Intergenic Intergenic 145021 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 739 chr11 78077499 78077853 + 2.5 NA intron (NM_001204054, intron 1 of 2) AluJr|SINE|Alu 2186 NM_001204055 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 544-18 chr8 117879477 117879819 + 2.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 41265 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 425-11 chr10 91864033 91864357 + 2.5 NA 3' UTR (NM_025235, exon 27 of 27) 3' UTR (NM_025235, exon 27 of 27) 45291 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 769.5-4 chr14 85405067 85405588 + 2.5 NA intron (NR_102738, intron 1 of 1) intron (NR_102738, intron 1 of 1) 11412 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 530-23 chr5 81577703 81578125 + 2.5 NA intron (NM_012446, intron 4 of 16) MIR|SINE|MIR 173339 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 390-4 chr13 85341657 85341933 + 2.5 NA Intergenic Intergenic -21808 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 255-20 chr3 12638138 12638325 + 2.5 NA intron (NM_001354691, intron 1 of 16) L2a|LINE|L2 25277 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 444-10 chr16 62707931 62708230 + 2.5 NA Intergenic AluJb|SINE|Alu -671642 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 471-7 chr10 95810699 95811066 + 2.5 NA intron (NM_001312654, intron 2 of 9) intron (NM_001312654, intron 2 of 9) 54719 NM_001164179 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 422.5-17 chr5 23968687 23968927 + 2.5 NA intron (NR_131245, intron 1 of 4) L1P3|LINE|L1 17459 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 511.5-10 chr2 24026105 24026472 + 2.5 NA 3' UTR (NM_001346880, exon 14 of 14) 3' UTR (NM_001346880, exon 14 of 14) 16203 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 185.5-15 chr2 13191681 13191780 + 2.5 NA Intergenic Intergenic -184717 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 427-6 chr1 153568414 153568624 + 2.5 NA Intergenic Intergenic -2675 NM_005978 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 460-21 chr8 100926045 100926514 + 2.5 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 24292 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 585.5-2 chr12 126477751 126478381 + 2.5 NA Intergenic Intergenic -28739 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 337.5-16 chr2 64104187 64104444 + 2.5 NA intron (NM_020651, intron 3 of 6) L3|LINE|CR1 40105 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 497.5-2 chr1 153468877 153469200 + 2.5 NA Intergenic Intergenic -8387 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 236.5-29 chr5 4325438 4325619 + 2.5 NA Intergenic Intergenic -447953 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 415-19 chr2 108447267 108447474 + 2.5 NA Intergenic Intergenic -1836 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 659.5-8 chr7 92021334 92021866 + 2.5 NA intron (NM_147185, intron 12 of 49) AluSx|SINE|Alu 80725 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 356.5-40 chr8 118407083 118407326 + 2.5 NA intron (NM_001349811, intron 3 of 4) L1MB2|LINE|L1 -213797 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 691-5 chr2 108104154 108104462 + 2.5 NA Intergenic L1MC5|LINE|L1 -51553 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 601.5-7 chr2 4205883 4206225 + 2.5 NA Intergenic MER66B|LTR|ERV1 231893 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 285.5-30 chr7 74473427 74473638 + 2.5 NA intron (NM_016328, intron 1 of 26) FRAM|SINE|Alu 19626 NM_005685 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 250.5-29 chr4 32752259 32752420 + 2.5 NA Intergenic Intergenic 401301 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 270-4 chr11 19757942 19758113 + 2.5 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) 2056 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 677-7 chr2 143461874 143462194 + 2.5 NA intron (NM_018460, intron 8 of 13) AluJb|SINE|Alu 332615 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 486.5-5 chr12 26170569 26170777 + 2.5 NA Intergenic Intergenic -24663 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 340-14 chr15 59341823 59342016 + 2.5 NA intron (NM_004998, intron 1 of 27) L1MA3|LINE|L1 30952 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 397.5-14 chr2 60011529 60011725 + 2.5 NA Intergenic L1ME3B|LINE|L1 371409 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 681-4 chr5 68211954 68212421 + 2.5 NA Intergenic Intergenic -3569 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 419.5-6 chr11 79387056 79387295 + 2.5 NA intron (NM_001098816, intron 1 of 33) L1ME3A|LINE|L1 14934 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 603-6 chr16 73513598 73513933 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 126960 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 396.5-5 chr1 174392809 174393059 + 2.5 NA intron (NM_001366445, intron 12 of 13) intron (NM_001366445, intron 12 of 13) -55030 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 366-2 chr11 105372457 105372672 + 2.5 NA Intergenic Intergenic -232795 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 391.5-13 chr16 71568077 71568443 + 2.5 NA exon (NM_000353, exon 12 of 12) exon (NM_000353, exon 12 of 12) 2471 NR_103851 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 477.5-24 chr8 53814623 53815054 + 2.5 NA intron (NM_213620, intron 5 of 13) intron (NM_213620, intron 5 of 13) 28204 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 318.5-15 chr2 110220519 110220843 + 2.5 NA intron (NM_001355251, intron 2 of 8) LTR66|LTR|ERVL -15668 NM_001128179 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 522-3 chr1 209263543 209263803 + 2.5 NA Intergenic L1M8|LINE|L1 -61783 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 291-11 chr17 60632513 60632679 + 2.5 NA intron (NM_003620, intron 2 of 5) FLAM_C|SINE|Alu 32413 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 473-2 chr10 51796695 51796956 + 2.5 NA intron (NM_001098512, intron 3 of 17) MLT2B2|LTR|ERVL -97230 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 476-23 chr22 49860143 49860429 + 2.5 NA intron (NM_014838, intron 1 of 1) AluJb|SINE|Alu 6442 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 446-23 chr2 227417691 227418009 + 2.5 NA Intergenic L1MC2|LINE|L1 -38544 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 567.5-5 chr14 78211491 78211864 + 2.5 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 41304 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 602-7 chr11 36988969 36989552 + 2.5 NA Intergenic MIRb|SINE|MIR -390981 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 814-3 chr4 24509760 24510277 + 2.5 NA Intergenic Intergenic 10272 NR_030299 693158 NR_030299 ENSG00000207697 MIR573 MIRN573|hsa-mir-573|mir-573 microRNA 573 ncRNA 458-8 chr12 49213190 49213501 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -14581 NM_001303114 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 311-17 chr2 147544806 147544995 + 2.5 NA Intergenic L2a|LINE|L2 -299617 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 894.5 chr13 37975195 37975742 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -105043 NM_001135955 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 202.5-29 chr8 52497701 52497793 + 2.5 NA Intergenic MER31A|LTR|ERV1 67683 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 522.5-8 chr20 54802747 54803115 + 2.5 NA Intergenic Intergenic 327338 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 273-9 chr12 118695792 118695979 + 2.5 NA Intergenic L1MA4|LINE|L1 65794 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 266.5-18 chr21 20764467 20764663 + 2.5 NA intron (NR_109786, intron 6 of 7) L1MEc|LINE|L1 38543 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 295.5-5 chr10 86553098 86553300 + 2.5 NA Intergenic Intergenic -31407 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 375.5-6 chr14 20769360 20769675 + 2.5 NA intron (NM_022360, intron 1 of 1) intron (NM_022360, intron 1 of 1) 1113 NM_022360 64184 Hs.525202 NM_022360 ENSG00000181552 EDDM3B EP3B|FAM12B|HE3-BETA|HE3B|RAM2 epididymal protein 3B protein-coding 367.5-22 chr3 124108067 124108269 + 2.5 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 13461 NM_001322992 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 435-28 chr4 185419524 185419883 + 2.5 NA intron (NM_018359, intron 2 of 11) L1MB7|LINE|L1 6261 NM_018359 55325 Hs.713548 NM_018359 ENSG00000109775 UFSP2 BHD|C4orf20|SEMDDR UFM1 specific peptidase 2 protein-coding 450.5-6 chr17 47226413 47226859 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 17288 NM_002476 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 464-18 chr3 128643729 128643923 + 2.5 NA intron (NM_002950, intron 2 of 9) AluSx|SINE|Alu 6992 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 627-9 chr2 209089729 209090092 + 2.5 NA Intergenic Intergenic -334137 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 192-15 chr20 40534326 40534477 + 2.5 NA Intergenic L2a|LINE|L2 154835 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 464.5-14 chr20 35237873 35238187 + 2.5 NA intron (NM_001355008, intron 2 of 14) intron (NM_001355008, intron 2 of 14) 11340 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 460.5-4 chr12 18376523 18376806 + 2.5 NA intron (NM_001288774, intron 13 of 32) MSTA|LTR|ERVL-MaLR 115124 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 354-17 chr2 120472890 120473050 + 2.5 NA Intergenic Intergenic -6621 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 559.5-5 chr12 123720704 123721062 + 2.5 NA intron (NM_012463, intron 2 of 19) intron (NM_012463, intron 2 of 19) 8530 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 242-23 chr4 72936014 72936122 + 2.5 NA Intergenic Intergenic 133648 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 755-11 chrX 95635010 95635531 + 2.5 NA Intergenic Intergenic -572044 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 417.5-17 chr4 100627435 100627645 + 2.5 NA Intergenic L1PA13|LINE|L1 47573 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 388-28 chr5 24939560 24939805 + 2.5 NA Intergenic Intergenic -99099 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 1085-2 chr5 74120790 74121528 + 2.5 NA Intergenic MER21C|LTR|ERVL 187166 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 584.5-4 chr2 169862337 169862663 + 2.5 NA intron (NM_172070, intron 1 of 38) L2a|LINE|L2 34992 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 277-42 chr6 139539746 139540023 + 2.5 NA Intergenic Intergenic -65288 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 497-6 chr17 59327111 59327508 + 2.5 NA Intergenic Intergenic -4346 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 901-5 chr7 115133327 115134059 + 2.5 NA intron (NR_126407, intron 2 of 4) intron (NR_126407, intron 2 of 4) 54735 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 392.5-16 chr18 31848324 31848656 + 2.5 NA intron (NM_014939, intron 25 of 28) intron (NM_014939, intron 25 of 28) -87610 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 398-3 chr10 129678621 129678818 + 2.5 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 164655 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 356.5-4 chr1 188598923 188599114 + 2.5 NA Intergenic Intergenic 1155390 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 417-11 chr11 106888466 106888705 + 2.5 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 129891 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 592-2 chr10 47025145 47025571 + 2.5 NA Intergenic MIRb|SINE|MIR 113636 NM_001352551 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 381.5-18 chr5 55533483 55533817 + 2.5 NA non-coding (NR_001575, exon 1 of 1) non-coding (NR_001575, exon 1 of 1) 892 NR_001575 379013 Hs.745164 NR_001575 RNF138P1 - ring finger protein 138 pseudogene 1 pseudo 463.5 chr1 40411513 40411882 + 2.5 NA intron (NM_022733, intron 4 of 9) intron (NM_022733, intron 4 of 9) 14897 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 195.5-25 chr4 87896955 87897086 + 2.5 NA Intergenic L1ME3|LINE|L1 62317 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 518.5-3 chr10 83500394 83500635 + 2.5 NA Intergenic L1MEg|LINE|L1 176575 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 317.5-2 chr1 170583200 170583344 + 2.5 NA Intergenic Intergenic -50663 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 719.5-6 chr6 37246152 37246553 + 2.5 NA intron (NM_145316, intron 1 of 3) intron (NM_145316, intron 1 of 3) 11247 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 390.5-26 chr5 174205739 174206053 + 2.5 NA Intergenic L2|LINE|L2 -130458 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 323.5-30 chr8 142941451 142941632 + 2.5 NA Intergenic AluSz|SINE|Alu -23698 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 356-37 chr8 124972797 124973062 + 2.5 NA promoter-TSS (NM_152412) promoter-TSS (NM_152412) -366 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 328.5-33 chr7 118401536 118401780 + 2.5 NA Intergenic Intergenic 176954 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 423.5-4 chr10 21866545 21866838 + 2.5 NA intron (NM_022365, intron 8 of 11) L1M5|LINE|L1 137039 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 272.5-30 chr4 121945751 121945906 + 2.5 NA intron (NM_001130698, intron 1 of 11) intron (NM_001130698, intron 1 of 11) 6232 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 545.5-7 chr2 239003676 239003966 + 2.5 NA Intergenic Intergenic 65093 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 348.5-12 chr21 24830687 24830887 + 2.5 NA Intergenic L1MA9|LINE|L1 -9763 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 251.5-6 chr11 77156423 77156594 + 2.5 NA intron (NM_001127180, intron 5 of 48) intron (NM_001127180, intron 5 of 48) 28262 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 279-32 chr7 2845967 2846181 + 2.5 NA Intergenic FRAM|SINE|Alu -1766 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 467.5-8 chr18 28633471 28633705 + 2.5 NA Intergenic LTR78|LTR|ERV1 -456458 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 800-6 chr17 33721093 33721632 + 2.5 NA intron (NM_001094, intron 1 of 9) MLT1I|LTR|ERVL-MaLR -187602 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 548.5-6 chr17 68814698 68815127 + 2.5 NA Intergenic Intergenic 140480 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 460.5-5 chr12 125738622 125738821 + 2.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 116269 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 400-20 chr22 30972567 30972863 + 2.5 NA intron (NR_110492, intron 2 of 3) intron (NR_110492, intron 2 of 3) 3504 NR_152870 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 469-8 chr14 84879943 84880170 + 2.5 NA Intergenic L1MC3|LINE|L1 -391876 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 560.5-6 chr14 48817721 48818150 + 2.5 NA Intergenic AluJo|SINE|Alu 768445 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 234-8 chr11 105422332 105422493 + 2.5 NA Intergenic Intergenic -187661 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 392.5-15 chr18 14054146 14054377 + 2.5 NA Intergenic Intergenic 78174 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 484-31 chr6 109478650 109478927 + 2.5 NA intron (NM_014797, intron 2 of 6) HAL1|LINE|L1 4449 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 186-4 chr12 115550890 115550979 + 2.5 NA Intergenic Intergenic 597720 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 340-25 chr20 33277904 33278099 + 2.5 NA Intergenic Intergenic -5213 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 492 chr1 106232687 106233058 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR -204619 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 281.5-8 chr13 95794492 95794886 + 2.5 NA 3' UTR (NM_006260, exon 12 of 12) 3' UTR (NM_006260, exon 12 of 12) 117550 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 336-21 chr16 61146341 61146566 + 2.5 NA Intergenic Intergenic -90687 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 753.5-3 chr2 85073575 85074285 + 2.5 NA Intergenic L1MB5|LINE|L1 -6583 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 586.5 chr1 52608322 52608765 + 2.5 NA 3' UTR (NM_015696, exon 3 of 3) 3' UTR (NM_015696, exon 3 of 3) 6172 NM_015696 2882 Hs.43728 NM_015696 ENSG00000116157 GPX7 CL683|GPX6|GPx-7|GSHPx-7|NPGPx glutathione peroxidase 7 protein-coding 404-16 chr14 83728422 83728687 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 1085922 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 312-33 chr7 92046524 92046711 + 2.5 NA intron (NM_147185, intron 21 of 49) intron (NM_147185, intron 21 of 49) 87860 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 219.5-37 chr7 84931417 84931516 + 2.5 NA Intergenic Intergenic 190465 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 746-6 chr4 41519346 41519703 + 2.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -18633 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 455.5-2 chr1 239664492 239664784 + 2.5 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 35565 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 292-15 chr18 63362902 63363140 + 2.5 NA intron (NM_002035, intron 1 of 9) intron (NM_002035, intron 1 of 9) 4185 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 251.5-15 chr2 100511883 100512040 + 2.5 NA Intergenic MIRb|SINE|MIR 41479 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 619-12 chr4 66642753 66643217 + 2.5 NA Intergenic Intergenic 366161 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 347-21 chr5 8177447 8177647 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 280017 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 431-24 chr4 38234337 38234592 + 2.5 NA Intergenic MIRb|SINE|MIR 114510 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 214.5-28 chr5 145221827 145222019 + 2.5 NA Intergenic Intergenic 613419 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 533.5-13 chr9 11813642 11813904 + 2.5 NA Intergenic L1MA5|LINE|L1 -879612 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 461-6 chr15 79358464 79358725 + 2.5 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) 47482 NM_001301203 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 512-2 chr11 19826735 19827048 + 2.5 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -66808 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 340-24 chr2 112159018 112159373 + 2.5 NA intron (NM_001128165, intron 1 of 6) intron (NM_001128165, intron 1 of 6) 20810 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 512.5-7 chr3 67911155 67911511 + 2.5 NA intron (NR_109992, intron 6 of 6) intron (NR_109992, intron 6 of 6) -80259 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 344-13 chr15 43998276 43998413 + 2.5 NA intron (NM_032892, intron 1 of 13) L2|LINE|L2 -120173 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 492-17 chr2 117015468 117015686 + 2.5 NA Intergenic L1MB8|LINE|L1 -799114 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 375-16 chr2 30663625 30663849 + 2.5 NA Intergenic Intergenic 143709 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 345-20 chr2 32345670 32345857 + 2.5 NA Intergenic L1MC2|LINE|L1 -11265 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 411.5-11 chr14 62458681 62458992 + 2.5 NA Intergenic L1MB8|LINE|L1 -318863 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 596-4 chr14 45557233 45557676 + 2.5 NA Intergenic Intergenic 158148 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 704.5-3 chr10 119401364 119401781 + 2.5 NA intron (NM_005308, intron 4 of 15) MIRb|SINE|MIR 23600 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 497.5-9 chr2 112113205 112113610 + 2.5 NA intron (NM_001329914, intron 18 of 18) intron (NM_001329914, intron 18 of 18) -24978 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 318.5-5 chr12 63989908 63990183 + 2.5 NA exon (NM_020762, exon 3 of 22) exon (NM_020762, exon 3 of 22) 145345 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 499.5-10 chr20 34987853 34988089 + 2.5 NA intron (NM_020884, intron 18 of 44) intron (NM_020884, intron 18 of 44) -2405 NR_030223 574501 NR_030223 ENSG00000207635 MIR499A MIR499|MIRN499|hsa-mir-499a|mir-499a microRNA 499a ncRNA 664.5-5 chr2 40061166 40061550 + 2.5 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 143724 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 278-22 chr5 18283933 18284078 + 2.5 NA Intergenic L1MC4a|LINE|L1 476731 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 310.5-12 chr13 58851619 58851790 + 2.5 NA Intergenic Intergenic -618587 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 628-14 chr7 3921624 3922093 + 2.5 NA intron (NM_152744, intron 5 of 44) AluJb|SINE|Alu -207827 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 349.5-7 chr12 31746940 31747211 + 2.5 NA Intergenic Charlie25|DNA|hAT-Charlie -17901 NM_001278411 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 586.5-15 chr7 110054311 110054750 + 2.5 NA Intergenic L1PB2|LINE|L1 -94317 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 328-27 chr4 168433686 168433892 + 2.5 NA intron (NM_001345927, intron 10 of 37) L1MEd|LINE|L1 46703 NM_001291510 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 638.5-6 chr20 18382061 18382640 + 2.5 NA TTS (NR_034167) TTS (NR_034167) 3301 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 548.5-2 chr13 39819213 39819531 + 2.5 NA Intergenic Intergenic -155237 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 275.5-24 chr3 141358069 141358245 + 2.5 NA intron (NM_001080412, intron 1 of 7) intron (NM_001080412, intron 1 of 7) -28268 NM_001350099 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 254.5-49 chrX 39421472 39421601 + 2.5 NA Intergenic MER3|DNA|hAT-Charlie -29762 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 554.5-10 chr22 23747077 23747455 + 2.5 NA intron (NM_021916, intron 1 of 1) MER1B|DNA|hAT-Charlie 3846 NM_021916 7621 Hs.382874 NM_021916 ENSG00000187792 ZNF70 Cos17 zinc finger protein 70 protein-coding 467.5-4 chr11 94561792 94562178 + 2.5 NA intron (NR_135094, intron 3 of 3) MER6A|DNA|TcMar-Tigger -5383 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 413-33 chr4 157575094 157575459 + 2.5 NA non-coding (NR_026992, exon 3 of 3) non-coding (NR_026992, exon 3 of 3) 2786 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 567-5 chr15 84827661 84827976 + 2.5 NA intron (NM_020778, intron 3 of 13) intron (NM_020778, intron 3 of 13) 11138 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 261.5-15 chr15 93445425 93445549 + 2.5 NA Intergenic L1MD3|LINE|L1 239421 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 369.5-23 chr6 129788512 129788684 + 2.5 NA Intergenic Intergenic 72717 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 219-38 chr8 107255365 107255485 + 2.5 NA intron (NM_001199859, intron 8 of 8) intron (NM_001199859, intron 8 of 8) 81090 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 642.5-9 chr7 26985287 26985627 + 2.5 NA Intergenic AluY|SINE|Alu 110543 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 331.5-18 chr3 26202738 26202923 + 2.5 NA Intergenic Intergenic -329135 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 446-4 chr1 178763450 178763743 + 2.5 NA intron (NM_152663, intron 1 of 19) L1PA15|LINE|L1 38352 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 322-6 chr12 48152691 48153132 + 2.5 NA intron (NM_001319298, intron 2 of 4) AluJb|SINE|Alu 4604 NM_001319298 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 269 chr1 154034737 154034844 + 2.5 NA intron (NM_001159484, intron 27 of 37) L1MA3|LINE|L1 44028 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 DBA17|MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 584.5-3 chr18 5385615 5385959 + 2.5 NA Intergenic L1PA5|LINE|L1 -88734 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 413.5-21 chr7 35639396 35639654 + 2.5 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 55610 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 323-4 chr10 53369096 53369555 + 2.5 NA Intergenic Intergenic -597625 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 274-9 chr11 95763430 95763609 + 2.5 NA Intergenic Intergenic 26263 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 586-9 chr20 49849363 49849849 + 2.5 NA exon (NM_015266, exon 6 of 16) exon (NM_015266, exon 6 of 16) -14253 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 661.5-6 chr20 46417629 46418022 + 2.5 NA intron (NR_146919, intron 1 of 3) HAL1ME|LINE|L1 -10774 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 626-2 chr10 52456762 52457187 + 2.5 NA intron (NR_120641, intron 2 of 3) AluJr4|SINE|Alu -1702 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 302.5-41 chr8 144779673 144779869 + 2.5 NA intron (NM_030580, intron 2 of 5) intron (NM_030580, intron 2 of 5) 7574 NM_001286770 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 277-16 chr14 71234831 71235024 + 2.5 NA Intergenic Intergenic -85549 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 466.5-13 chr2 119790753 119791110 + 2.5 NA intron (NM_002830, intron 1 of 26) L1MB3|LINE|L1 31009 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 534-9 chr12 84421409 84421684 + 2.5 NA Intergenic Intergenic 491253 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 469-11 chr18 13250778 13251070 + 2.5 NA intron (NM_181482, intron 1 of 5) L1MA5A|LINE|L1 11381 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 517-14 chr8 77330609 77330973 + 2.5 NA Intergenic L1M2|LINE|L1 -119906 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 464-24 chr6 152300225 152300478 + 2.5 NA intron (NM_182961, intron 93 of 145) intron (NM_182961, intron 93 of 145) -80179 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 579.5-19 chr8 83776771 83777009 + 2.5 NA Intergenic AluSq|SINE|Alu 373132 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 445.5-29 chr8 142786206 142786398 + 2.5 NA intron (NM_003695, intron 1 of 2) intron (NM_003695, intron 1 of 2) 237 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 540.5-12 chr9 74733428 74733864 + 2.5 NA intron (NM_017662, intron 36 of 38) MIRb|SINE|MIR 118112 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 645-13 chr6 150568430 150568725 + 2.5 NA Intergenic Intergenic -31308 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 430.5-22 chr7 136067789 136068025 + 2.5 NA Intergenic Intergenic -90548 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 378.5-26 chr5 39368580 39368867 + 2.5 NA Intergenic Intergenic -4228 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 545.5-9 chr21 29892107 29892452 + 2.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 47717 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 392.5-22 chr4 168942434 168942700 + 2.5 NA Intergenic L1M2c|LINE|L1 67688 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 609-11 chr3 28739497 28739825 + 2.5 NA intron (NR_038840, intron 2 of 4) (GT)n|Simple_repeat|Simple_repeat 164383 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 268.5-28 chr5 85747074 85747232 + 2.5 NA Intergenic Intergenic -535291 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 591-5 chr13 60834510 60834899 + 2.5 NA Intergenic Intergenic 161749 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 493.5-3 chr10 102231723 102232036 + 2.5 NA intron (NM_005029, intron 2 of 3) CpG-3304 5580 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 321.5-5 chr1 151928106 151928330 + 2.5 NA Intergenic MER4B-int|LTR|ERV1 -18707 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 328.5-36 chr9 85477878 85478053 + 2.5 NA Intergenic Intergenic 264064 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 408-42 chr8 109386267 109386522 + 2.5 NA intron (NM_177531, intron 6 of 77) intron (NM_177531, intron 6 of 77) 23933 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 576.5-4 chr22 26619049 26619513 + 2.5 NA Intergenic (GAGACA)n|Simple_repeat|Simple_repeat -1254 NM_001887 1414 Hs.37135 NM_001887 ENSG00000100122 CRYBB1 CATCN3|CTRCT17 crystallin beta B1 protein-coding 639.5-8 chr5 63606857 63607302 + 2.5 NA Intergenic L1MEc|LINE|L1 355213 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 351-34 chr4 157583623 157583931 + 2.5 NA Intergenic Intergenic 11287 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 299.5-16 chr18 1776456 1776682 + 2.5 NA Intergenic Intergenic -416940 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 240-19 chr17 68964074 68964201 + 2.5 NA Intergenic Intergenic -8745 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 299-3 chr1 189748745 189748884 + 2.5 NA Intergenic L1MC4|LINE|L1 727196 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 463.5-11 chr22 45629842 45630056 + 2.5 NA Intergenic Intergenic -24302 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 318-14 chr16 61278339 61278524 + 2.5 NA Intergenic Intergenic -222665 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 498-24 chr6 99174040 99174599 + 2.5 NA Intergenic L1ME3|LINE|L1 49710 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 336.5-15 chr3 99796066 99796301 + 2.5 NA 3' UTR (NM_020351, exon 4 of 4) 3' UTR (NM_020351, exon 4 of 4) -21679 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 231-3 chr1 235233514 235233703 + 2.5 NA intron (NR_135074, intron 9 of 24) intron (NR_135074, intron 9 of 24) -43492 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 349.5-34 chr9 27986727 27986941 + 2.5 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -412968 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1006-4 chr12 9621423 9622098 + 2.5 NA intron (NR_046450, intron 1 of 4) L1MB2|LINE|L1 4476 NR_046450 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 552-24 chr9 9819734 9820113 + 2.5 NA intron (NM_002839, intron 5 of 45) L1PA16|LINE|L1 20531 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 715.5-10 chr5 113595319 113595716 + 2.5 NA TTS (NM_001345976) TTS (NM_001345976) 81823 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 556.5-13 chr4 121235341 121235673 + 2.5 NA Intergenic AluSx1|SINE|Alu -8024 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 245.5-40 chrX 100004807 100004948 + 2.5 NA Intergenic Intergenic 405396 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 546-7 chr19 29917741 29918049 + 2.5 NA Intergenic L1MCc|LINE|L1 -5762 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 440.5-19 chr5 132605304 132605659 + 2.5 NA intron (NM_005732, intron 16 of 24) AluJr|SINE|Alu 36309 NR_132124 101927761 Hs.598812 NR_132124 ENSG00000223442 TH2LCRR TH2-LCR T helper type 2 locus control region associated RNA ncRNA 579.5-17 chr8 33302594 33303052 + 2.5 NA Intergenic L1PBa|LINE|L1 170323 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 570-25 chr8 88625569 88625923 + 2.5 NA Intergenic L1MCb|LINE|L1 -298263 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 410.5-12 chr20 35469360 35469569 + 2.5 NA intron (NM_007186, intron 9 of 34) intron (NM_007186, intron 9 of 34) 9481 NM_001318219 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 341.5-30 chr6 112892599 112892856 + 2.5 NA Intergenic Intergenic 540720 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 758-8 chr8 132936130 132936583 + 2.5 NA intron (NM_003235, intron 25 of 47) intron (NM_003235, intron 25 of 47) 69398 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 684-3 chr12 104325253 104325680 + 2.5 NA intron (NM_001093771, intron 11 of 16) intron (NM_001093771, intron 11 of 16) 21727 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 326-16 chr16 11713340 11713572 + 2.5 NA intron (NM_001303447, intron 5 of 12) AluSp|SINE|Alu 29401 NR_136672 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 691.5 chr11 75116147 75116598 + 2.5 NA Intergenic MLT2B3|LTR|ERVL -19482 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 433-22 chr5 7600097 7600443 + 2.5 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 204132 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 423-30 chr4 178729983 178730167 + 2.5 NA Intergenic Intergenic -822139 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 628-15 chr9 74953723 74954093 + 2.5 NA promoter-TSS (NM_017998) promoter-TSS (NM_017998) 943 NR_121183 101927380 Hs.257556 NR_121183 CARNMT1-AS1 C9orf41-AS1 CARNMT1 antisense RNA 1 ncRNA 501.5-10 chr16 84710970 84711252 + 2.5 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 11111 NM_001272075 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 180.5-3 chr11 24158095 24158199 + 2.5 NA Intergenic L1PA16|LINE|L1 -338906 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 319.5-21 chr3 35296799 35296936 + 2.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 97156 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 370.5-26 chr8 66750101 66750263 + 2.5 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 17852 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 531-8 chr14 30862700 30863105 + 2.5 NA Intergenic MIRc|SINE|MIR -11633 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 548.5-13 chr3 3585873 3586221 + 2.5 NA Intergenic Intergenic -213384 NM_001324188 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 425-28 chr2 142742565 142742881 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -134941 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 313-36 chr8 51792035 51792235 + 2.5 NA intron (NM_144651, intron 1 of 22) L1PA8A|LINE|L1 17310 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 461-31 chr9 5633235 5633558 + 2.5 NA intron (NM_001206557, intron 1 of 24) intron (NM_001206557, intron 1 of 24) 4277 NM_001206557 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 334-14 chr19 45669976 45670142 + 2.5 NA intron (NM_001308418, intron 2 of 12) AluSz|SINE|Alu 1838 NM_001308418 2696 Hs.251412 NM_000164 ENSG00000010310 GIPR PGQTL2 gastric inhibitory polypeptide receptor protein-coding 696-9 chr3 122533889 122534277 + 2.5 NA 3' UTR (NM_001146106, exon 10 of 10) 3' UTR (NM_001146106, exon 10 of 10) -19144 NR_026698 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 154-6 chr4 59816083 59816162 + 2.5 NA Intergenic A-rich|Low_complexity|Low_complexity 802549 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 468-29 chr4 97396625 97397022 + 2.5 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 29897 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 180-14 chr6 61848247 61848330 + 2.5 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 274158 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 785.5-5 chr22 34907156 34907534 + 2.5 NA intron (NR_138042, intron 1 of 4) MIR|SINE|MIR 90571 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 336.5-5 chr1 245244325 245244592 + 2.5 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) -9941 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 458.5-5 chr11 115532769 115533110 + 2.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -28524 NM_001301044 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 452.5-13 chr3 150805251 150805567 + 2.5 NA Intergenic Intergenic -42240 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 489.5-20 chr8 36814257 36814593 + 2.5 NA intron (NM_001031836, intron 8 of 26) intron (NM_001031836, intron 8 of 26) 30051 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 588-10 chr12 23636967 23637342 + 2.5 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -52568 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 360.5-18 chr4 128064699 128064883 + 2.5 NA intron (NR_146772, intron 1 of 19) FAM|SINE|Alu 3479 NM_001350531 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 1112.5 chr10 43362695 43363500 + 2.5 NA Intergenic AluSc|SINE|Alu -8539 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 532-15 chr6 67151364 67151621 + 2.5 NA Intergenic Intergenic -903859 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 261.5-12 chr14 45251935 45252080 + 2.5 NA intron (NM_018353, intron 1 of 16) MIR|SINE|MIR 1195 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 494-20 chr8 22571922 22572195 + 2.5 NA intron (NM_001018003, intron 8 of 9) intron (NM_001018003, intron 8 of 9) 6329 NM_001018003 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 579-17 chr3 82036892 82037161 + 2.5 NA intron (NR_147146, intron 1 of 8) LTR16C|LTR|ERVL 50884 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 279.5-2 chr1 182596736 182596876 + 2.5 NA Intergenic Intergenic -7550 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 594-19 chr9 99753625 99753941 + 2.5 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 66106 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 838-8 chr7 49840729 49841311 + 2.5 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 65687 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 782.5-3 chr5 126783276 126783641 + 2.5 NA intron (NR_134488, intron 1 of 11) intron (NR_134488, intron 1 of 11) 6322 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 209.5-6 chr10 123475452 123475578 + 2.5 NA Intergenic L1MB5|LINE|L1 -190840 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 629.5-11 chr8 84901194 84901497 + 2.5 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 195418 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 354-11 chr17 74716439 74716637 + 2.5 NA intron (NM_175738, intron 1 of 8) MIRb|SINE|MIR -3615 NM_001289086 146722 Hs.567706 NM_139018 ENSG00000186074 CD300LF CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|LMIR3|NKIR CD300 molecule like family member f protein-coding 358.5-10 chr2 40298658 40298880 + 2.5 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 131535 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 287-14 chr17 58945861 58946046 + 2.5 NA intron (NM_014906, intron 1 of 6) MER21C|LTR|ERVL 160927 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 490.5-8 chr2 122105200 122105569 + 2.5 NA Intergenic Intergenic 349733 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 514-11 chr2 166829177 166829569 + 2.5 NA Intergenic Tigger12|DNA|TcMar-Tigger -59114 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 293.5-18 chr2 28031839 28032050 + 2.5 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 35577 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 608-6 chr15 69763357 69763626 + 2.5 NA Intergenic Intergenic -71743 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 625-20 chr9 98473948 98474303 + 2.5 NA intron (NM_005458, intron 5 of 18) MIRb|SINE|MIR -218476 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 438.5-6 chr2 123655492 123655829 + 2.5 NA Intergenic Intergenic 369514 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 492.5-4 chr11 90251444 90251730 + 2.5 NA intron (NR_104190, intron 1 of 6) (AT)n|Simple_repeat|Simple_repeat 355 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 528-16 chr2 85131191 85131545 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -2024 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 530.5-6 chr2 75527785 75528069 + 2.5 NA intron (NM_001369524, intron 2 of 5) L1PB1|LINE|L1 3859 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 678-4 chr2 151059755 151060097 + 2.5 NA Intergenic Intergenic 201937 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 334-16 chr2 199023262 199023495 + 2.5 NA Intergenic Intergenic 434561 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 259.5-45 chr8 117648679 117648803 + 2.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 128028 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 483-30 chr6 127157130 127157429 + 2.5 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 38608 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 465.5-11 chr2 124619691 124619991 + 2.5 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 594554 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 529-20 chr7 46528339 46528606 + 2.5 NA Intergenic MER41-int|LTR|ERV1 168650 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 521-2 chr11 79516496 79516738 + 2.5 NA Intergenic Intergenic -75587 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 790.5-2 chr5 18609630 18610107 + 2.5 NA Intergenic Intergenic 802594 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 249.5-19 chr22 38565043 38565183 + 2.5 NA intron (NM_001363017, intron 4 of 11) intron (NM_001363017, intron 4 of 11) 3296 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 574-3 chr11 77133010 77133387 + 2.5 NA intron (NM_001127180, intron 2 of 48) intron (NM_001127180, intron 2 of 48) 4952 NM_000260 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 439.5-25 chr5 45842997 45843295 + 2.5 NA Intergenic Intergenic -146766 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 539.5-8 chr14 28646469 28646799 + 2.5 NA Intergenic Intergenic 118685 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 461-8 chr18 22146266 22146582 + 2.5 NA Intergenic Intergenic 22544 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 549-16 chr6 120474246 120474500 + 2.5 NA Intergenic Intergenic 459194 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 337-11 chr15 82975853 82976005 + 2.5 NA Intergenic L1MA2|LINE|L1 -10281 NM_031452 83640 Hs.80624 NM_031452 ENSG00000169612 RAMAC C15orf18|FAM103A1|HsT19360|RAM|RAMMET RNA guanine-7 methyltransferase activating subunit protein-coding 540.5-8 chr7 75714110 75714350 + 2.5 NA intron (NM_005338, intron 1 of 30) AluSx|SINE|Alu 24711 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 721-7 chr6 138558390 138558835 + 2.5 NA intron (NM_020464, intron 1 of 6) AluSc|SINE|Alu 13957 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 243-30 chr6 116197635 116197772 + 2.5 NA intron (NM_152729, intron 6 of 11) MIR|SINE|MIR 56372 NM_021648 23270 Hs.284141 NM_021648 ENSG00000187189 TSPYL4 dJ486I3.2 TSPY like 4 protein-coding 452-7 chr13 20622714 20623033 + 2.5 NA intron (NR_148465, intron 13 of 20) L1MC1|LINE|L1 55716 NM_001353572 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 391-17 chr3 63143023 63143305 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 40476 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 283-16 chr16 54298329 54298442 + 2.5 NA Intergenic MER102b|DNA|hAT-Charlie -11598 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 506-33 chr9 88565361 88565764 + 2.5 NA intron (NM_145283, intron 1 of 2) AluSx|SINE|Alu 30384 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 535.5-11 chr20 54738451 54738837 + 2.5 NA Intergenic Intergenic 263051 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 506-9 chr14 51871362 51871633 + 2.5 NA intron (NM_001243774, intron 1 of 2) MIRb|SINE|MIR 10885 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 559-18 chr6 3658099 3658358 + 2.5 NA Intergenic L2c|LINE|L2 93784 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 395.5-20 chr21 35387972 35388236 + 2.5 NA intron (NR_073512, intron 2 of 2) L1MEf|LINE|L1 192660 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 470-24 chr3 36764638 36764889 + 2.5 NA Intergenic Intergenic -24902 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 425.5-12 chr19 47119723 47119931 + 2.5 NA Intergenic AluY|SINE|Alu -6051 NM_015168 23211 Hs.104661 NM_015168 ENSG00000130749 ZC3H4 C19orf7 zinc finger CCCH-type containing 4 protein-coding 562.5-7 chr11 23689788 23690114 + 2.5 NA Intergenic Intergenic -270761 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 671-8 chr2 150749092 150749520 + 2.5 NA Intergenic L1MCc|LINE|L1 120409 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 425.5-14 chr2 182890453 182890701 + 2.5 NA Intergenic Intergenic -23940 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 254.5-22 chr18 53388151 53388332 + 2.5 NA intron (NM_005215, intron 16 of 28) intron (NM_005215, intron 16 of 28) 151140 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 502-16 chr4 116520517 116520788 + 2.5 NA Intergenic MER50|LTR|ERV1 220927 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 1021.5-2 chr21 45438901 45439556 + 2.5 NA intron (NM_130445, intron 2 of 42) intron (NM_130445, intron 2 of 42) -14158 NR_027498 378832 Hs.517353 NM_199175 ENSG00000183535 COL18A1-AS1 C21orf123|NCRNA00175|PRED80 COL18A1 antisense RNA 1 ncRNA 319-17 chr18 31578653 31578790 + 2.5 NA Intergenic AluJr|SINE|Alu -13046 NM_000371 7276 Hs.427202 NM_000371 ENSG00000118271 TTR ATTR|CTS|CTS1|HEL111|HsT2651|PALB|TBPA transthyretin protein-coding 468.5-11 chr6 54352064 54352296 + 2.5 NA intron (NM_014464, intron 8 of 10) intron (NM_014464, intron 8 of 10) 43739 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 480.5-4 chr2 18593876 18594129 + 2.5 NA Intergenic Intergenic -4422 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 532-11 chr22 41000757 41001157 + 2.5 NA Intergenic L1MC4a|LINE|L1 49579 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 526-23 chrX 143551724 143552021 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -34397 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 280.5-34 chr6 170206679 170206791 + 2.5 NA Intergenic Intergenic 46093 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 469.5-14 chr4 74459044 74459385 + 2.5 NA Intergenic L1MA5A|LINE|L1 14078 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 330-31 chr3 57215782 57216048 + 2.5 NA Intergenic L1MC4|LINE|L1 -11814 NM_012096 26060 Hs.476415 NM_012096 ENSG00000157500 APPL1 APPL|DIP13alpha|MODY14 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 protein-coding 358.5-23 chr5 42124092 42124284 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 51157 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 852-4 chr17 35695284 35695888 + 2.5 NA intron (NM_001030006, intron 18 of 21) intron (NM_001030006, intron 18 of 21) -36053 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 570.5-11 chr8 125543830 125544226 + 2.5 NA Intergenic Kanga1d|DNA|TcMar-Tc2 111819 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 397-34 chr8 106312861 106313051 + 2.5 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 42778 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 522.5-6 chr16 4593432 4593934 + 2.5 NA intron (NM_001145011, intron 12 of 15) MIRb|SINE|MIR 21205 NM_145253 124402 Hs.513313 NM_145253 ENSG00000153443 UBALD1 FAM100A|PP11303 UBA like domain containing 1 protein-coding 528-26 chr4 114232286 114232561 + 2.5 NA Intergenic L1PB1|LINE|L1 -252776 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 554-13 chr18 46535543 46535931 + 2.5 NA intron (NM_001145472, intron 8 of 23) AluSx1|SINE|Alu -16651 NM_001145473 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 507-2 chr10 9087378 9087909 + 2.5 NA Intergenic L2a|LINE|L2 -187970 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 323-16 chr19 39557333 39557595 + 2.5 NA Intergenic L1MB4|LINE|L1 -17303 NM_153232 163126 Hs.18949 NM_153232 ENSG00000176396 EID2 CRI2|EID-2 EP300 interacting inhibitor of differentiation 2 protein-coding 245-23 chr2 193380010 193380138 + 2.5 NA Intergenic Intergenic 630229 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 410.5-23 chr8 91759817 91760151 + 2.5 NA Intergenic L2b|LINE|L2 257696 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 539-12 chr4 85438183 85438486 + 2.5 NA Intergenic MIR|SINE|MIR -36816 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 387.5-25 chr9 86485861 86486126 + 2.5 NA Intergenic Intergenic -131583 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 754.5-8 chrX 82864842 82865320 + 2.5 NA Intergenic L1M2|LINE|L1 -643209 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 398.5-12 chr20 42558027 42558328 + 2.5 NA intron (NM_133170, intron 7 of 31) L1PA13|LINE|L1 -127306 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 369.5-21 chr5 64219961 64220136 + 2.5 NA intron (NM_001113561, intron 5 of 7) L1ME1|LINE|L1 54205 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 424.5-14 chr3 17466719 17466888 + 2.5 NA intron (NM_014744, intron 3 of 21) intron (NM_014744, intron 3 of 21) 233217 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 581.5-12 chr22 26922982 26923611 + 2.5 NA Intergenic Intergenic 20004 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 386.5-25 chr8 92329689 92329949 + 2.5 NA Intergenic L1PA11|LINE|L1 -226434 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 430.5-15 chr2 66746863 66747105 + 2.5 NA Intergenic MER103C|DNA|hAT-Charlie -43757 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 567.5-10 chr3 76665822 76666114 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -374131 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 314-34 chr5 149337343 149337654 + 2.5 NA intron (NM_152406, intron 18 of 18) MIR|SINE|MIR -8001 NM_152407 134266 Hs.511816 NM_152407 ENSG00000164284 GRPEL2 Mt-GrpE#2 GrpE like 2, mitochondrial protein-coding 543-2 chr10 70131620 70131909 + 2.5 NA intron (NM_001198696, intron 1 of 8) intron (NM_001198696, intron 1 of 8) 1061 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 413-11 chr14 44998187 44998515 + 2.5 NA intron (NR_131765, intron 2 of 19) intron (NR_131765, intron 2 of 19) 36161 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 505.5-21 chr7 109882608 109882863 + 2.5 NA Intergenic Intergenic 77478 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 1033.5-2 chr9 112236831 112237764 + 2.5 NA intron (NM_001244896, intron 6 of 12) intron (NM_001244896, intron 6 of 12) -62000 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 310.5-34 chr4 58612029 58612206 + 2.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -75789 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 345.5-28 chr6 118649871 118650025 + 2.5 NA intron (NM_001178035, intron 2 of 13) intron (NM_001178035, intron 2 of 13) 1643 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 617.5-8 chr15 36204080 36204348 + 2.5 NA Intergenic L1MA9|LINE|L1 277358 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 1143 chr16 34087656 34088528 + 2.5 NA Intergenic Intergenic -75486 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 439-4 chr15 68247094 68247363 + 2.5 NA Intergenic L1MA4|LINE|L1 -17500 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 235.5-9 chr14 67943094 67943256 + 2.5 NA intron (NM_133509, intron 7 of 10) MARNA|DNA|TcMar-Mariner 119583 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 306.5-19 chr19 36693387 36693558 + 2.5 NA intron (NM_001322920, intron 3 of 6) AluJb|SINE|Alu 5860 NM_001322915 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 502.5-6 chr17 61452824 61453151 + 2.5 NA intron (NM_001321120, intron 1 of 8) intron (NM_001321120, intron 1 of 8) 565 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 424.5-5 chr12 98545213 98545549 + 2.5 NA intron (NM_001032283, intron 7 of 8) intron (NM_001032283, intron 7 of 8) -29155 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 691.5-2 chr12 62132461 62132860 + 2.5 NA intron (NM_178539, intron 1 of 4) MER20B|DNA|hAT-Charlie 60179 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 622.5-5 chr6 135917317 135917801 + 2.5 NA intron (NM_018945, intron 1 of 12) L1ME2|LINE|L1 65858 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 327.5-10 chr17 72738632 72738813 + 2.5 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -98250 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 640.5-12 chr6 53616300 53616751 + 2.5 NA Intergenic Intergenic -11855 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 473-30 chrX 67957715 67957938 + 2.5 NA Intergenic Intergenic 413203 NM_001348061 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 1069-2 chr14 68462622 68463376 + 2.5 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 165788 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 441.5 chr1 28761878 28762108 + 2.5 NA intron (NM_001173128, intron 5 of 5) intron (NM_001173128, intron 5 of 5) 25053 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 320.5-19 chr20 43737387 43737726 + 2.5 NA Intergenic MER63B|DNA|hAT-Blackjack -10554 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 873.5-3 chr7 1877631 1878157 + 2.5 NA intron (NM_001013837, intron 18 of 18) L1ME4a|LINE|L1 -33641 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 414.5-11 chr18 10532679 10532989 + 2.5 NA intron (NM_003826, intron 3 of 11) intron (NM_003826, intron 3 of 11) 6807 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 515-3 chr1 187281351 187281673 + 2.5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -162116 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 553.5-4 chr13 97444518 97444881 + 2.5 NA intron (NM_021033, intron 1 of 1) intron (NM_021033, intron 1 of 1) 10530 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 478.5-12 chr22 22048076 22048412 + 2.5 NA Intergenic Intergenic -4310 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 235.5-4 chr1 117156020 117156172 + 2.5 NA intron (NM_001253850, intron 2 of 4) intron (NM_001253850, intron 2 of 4) -34347 NM_001145635 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 483-26 chr5 114242847 114243102 + 2.5 NA Intergenic L2a|LINE|L2 -119096 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 256.5-25 chr4 101479040 101479215 + 2.5 NA Intergenic Intergenic 131350 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 648-5 chr17 72042382 72042689 + 2.5 NA intron (NR_110877, intron 1 of 2) L1ME4b|LINE|L1 11881 NR_110132 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 423.5-7 chr12 109872823 109873042 + 2.5 NA intron (NM_016433, intron 1 of 4) MER30|DNA|hAT-Charlie 7609 NM_016433 51228 Hs.381256 NM_016433 ENSG00000139433 GLTP - glycolipid transfer protein protein-coding 382-38 chr6 46151648 46151875 + 2.5 NA Intergenic L1MEg|LINE|L1 19219 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 309-34 chr5 23813036 23813194 + 2.5 NA Intergenic Intergenic -138233 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 516-19 chr21 29418724 29419068 + 2.5 NA Intergenic Intergenic 46395 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 504.5-4 chr2 81399668 81400188 + 2.5 NA Intergenic Intergenic 67018 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 338-13 chr17 60303027 60303261 + 2.5 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) -71499 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 416.5-7 chr11 108484043 108484329 + 2.5 NA intron (NM_001363503, intron 3 of 6) MER20|DNA|hAT-Charlie 14198 NM_001363503 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 405-14 chr19 29380609 29380894 + 2.5 NA intron (NR_040029, intron 9 of 9) MLT1I|LTR|ERVL-MaLR 145001 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 425.5-9 chr18 22938698 22938920 + 2.5 NA intron (NM_002894, intron 2 of 18) L2c|LINE|L2 4933 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 531-13 chr17 75303746 75304265 + 2.5 NA Intergenic AluSx1|SINE|Alu -14556 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 355-13 chr17 77651272 77651524 + 2.5 NA Intergenic L1ME1|LINE|L1 77161 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 455.5-19 chr6 66560629 66561012 + 2.5 NA Intergenic Intergenic 772941 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 329-11 chr16 1692732 1692938 + 2.5 NA intron (NM_144570, intron 3 of 4) intron (NM_144570, intron 3 of 4) -13348 NM_001318852 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 697.5 chr1 160444647 160445161 + 2.5 NA Intergenic MER47A|DNA|TcMar-Tigger 44340 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 559.5 chr1 159858891 159859171 + 2.5 NA intron (NM_001013661, intron 1 of 6) intron (NM_001013661, intron 1 of 6) 3626 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 450.5-11 chr4 156862716 156862898 + 2.5 NA intron (NR_036641, intron 1 of 6) AluSg4|SINE|Alu 108992 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 302.5-9 chr12 56412746 56412905 + 2.5 NA Intergenic MER52A|LTR|ERV1 36601 NR_138471 8914 Hs.118631 NM_003920 ENSG00000111602 TIMELESS TIM|TIM1|hTIM timeless circadian regulator protein-coding 244-10 chr15 78360828 78360936 + 2.5 NA Intergenic Intergenic 20529 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 354-22 chr3 30066551 30066833 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR -132536 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 581.5-13 chr22 47276427 47276745 + 2.5 NA Intergenic Intergenic -68985 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 518-15 chr3 114357790 114358158 + 2.5 NA intron (NR_038993, intron 3 of 8) intron (NR_038993, intron 3 of 8) 6163 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 295.5-7 chr13 50373102 50373269 + 2.5 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 154264 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 513-25 chr5 52809524 52809930 + 2.5 NA intron (NM_181501, intron 1 of 28) AluSz|SINE|Alu 21811 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 425-32 chr4 91073254 91073455 + 2.5 NA intron (NM_001145065, intron 9 of 10) MamRTE1|LINE|RTE-BovB 838323 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 465.5-12 chr2 171344001 171344267 + 2.5 NA intron (NM_001321158, intron 2 of 8) intron (NM_001321158, intron 2 of 8) 89856 NM_001321155 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 637.5-3 chr20 10133963 10134230 + 2.5 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -84702 NM_001322907 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 767.5-2 chr15 65619814 65620457 + 2.5 NA intron (NM_001301033, intron 3 of 11) L2b|LINE|L2 -1803 NM_004727 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 674.5-6 chr2 82963656 82964038 + 2.5 NA Intergenic AluY|SINE|Alu 107044 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 428.5-3 chr1 210277593 210277956 + 2.5 NA Intergenic AluSq2|SINE|Alu -43889 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 578-7 chr13 104707217 104707598 + 2.5 NA Intergenic MIR|SINE|MIR -758460 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 476.5-7 chr14 90883830 90884266 + 2.5 NA intron (NM_001322237, intron 14 of 16) L1M4c|LINE|L1 -67618 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 539.5-9 chr14 59773332 59773675 + 2.5 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 97273 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 231.5-33 chr7 125276192 125276372 + 2.5 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) -11991 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 534-5 chr10 130998039 130998310 + 2.5 NA Intergenic Intergenic -35506 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 365-5 chr11 56187977 56188165 + 2.5 NA Intergenic Intergenic 11453 NM_001005492 282775 Hs.537145 NM_001005492 ENSG00000174957 OR5J2 OR11-266 olfactory receptor family 5 subfamily J member 2 protein-coding 493 chr1 214953923 214954213 + 2.5 NA Intergenic Intergenic -51474 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 340-18 chr18 41374660 41374863 + 2.5 NA Intergenic Intergenic 145916 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 251.5-24 chr6 3520869 3521035 + 2.5 NA Intergenic Intergenic -64393 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 587.5-2 chr1 188587378 188587684 + 2.5 NA Intergenic Intergenic 1143903 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 391-11 chr2 26864605 26864869 + 2.5 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 16313 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 400.5-3 chr1 101590556 101590822 + 2.5 NA Intergenic L2b|LINE|L2 256391 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 562.5-12 chr17 61601577 61602058 + 2.5 NA Intergenic AluSg|SINE|Alu -10598 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 251-33 chr7 92240878 92240988 + 2.5 NA intron (NM_001013406, intron 4 of 16) intron (NM_001013406, intron 4 of 16) -5041 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 250-19 chr2 56167946 56168070 + 2.5 NA Intergenic Intergenic -15982 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 482.5-12 chr3 160788311 160788743 + 2.5 NA intron (NM_139245, intron 1 of 3) L1MC|LINE|L1 32296 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 457.5-24 chr6 62412617 62412946 + 2.5 NA Intergenic L1PREC2|LINE|L1 -126554 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 589-11 chr3 171325272 171325615 + 2.5 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) 134962 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 417.5-3 chr12 82541660 82541947 + 2.5 NA Intergenic L1MA7|LINE|L1 -145103 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 463.5-22 chr7 106474541 106475011 + 2.5 NA Intergenic L2|LINE|L2 186382 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 353.5-12 chr17 60404597 60404800 + 2.5 NA Intergenic Intergenic -12565 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 608.5 chr1 109612506 109612802 + 2.5 NA intron (NM_005272, intron 1 of 7) intron (NM_005272, intron 1 of 7) 430 NM_005272 2780 Hs.36973 NM_005272 ENSG00000134183 GNAT2 ACHM4|GNATC G protein subunit alpha transducin 2 protein-coding 470-36 chr8 41508827 41509027 + 2.5 NA intron (NM_001002296, intron 4 of 4) intron (NM_001002296, intron 4 of 4) 18315 NM_001362980 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 277-3 chr10 43552574 43552905 + 2.5 NA Intergenic AluSx|SINE|Alu 15720 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 496.5-12 chr3 153525944 153526265 + 2.5 NA intron (NR_146713, intron 5 of 6) L1MA4|LINE|L1 41609 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 233-26 chr7 113556489 113556678 + 2.5 NA Intergenic L1ME3C|LINE|L1 362426 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 408.5-23 chr9 13475356 13475675 + 2.5 NA Intergenic L1PA15|LINE|L1 -44186 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 417-21 chr16 80697942 80698146 + 2.5 NA intron (NM_152342, intron 1 of 6) L1MA5|LINE|L1 106554 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 440.5-5 chr11 7552168 7552441 + 2.5 NA intron (NM_003621, intron 2 of 23) MIR|SINE|MIR -24463 NM_001351858 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 349-35 chr6 156731983 156732332 + 2.5 NA Intergenic Intergenic -45698 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 342-39 chr8 78911483 78911717 + 2.5 NA Intergenic MIRb|SINE|MIR 74071 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 362-6 chr10 111192498 111192840 + 2.5 NA Intergenic L1ME1|LINE|L1 78378 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 335-26 chr2 74897007 74897165 + 2.5 NA Intergenic LTR39-int|LTR|ERV1 -12045 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 558.5-16 chr8 138456584 138456885 + 2.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 40527 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 396.5-12 chr17 53970748 53971116 + 2.5 NA Intergenic Intergenic 148005 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 592-7 chr17 31217185 31217546 + 2.5 NA intron (NM_001042492, intron 13 of 57) AluSx1|SINE|Alu 79874 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 435.5-13 chr4 53953901 53954235 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 33214 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 252.5-13 chr2 83812318 83812433 + 2.5 NA Intergenic Intergenic 289561 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 369-26 chr22 25167471 25167828 + 2.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -32209 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 289.5-31 chr5 43174228 43174396 + 2.5 NA intron (NM_003432, intron 7 of 7) intron (NM_003432, intron 7 of 7) -17913 NM_153361 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 263-4 chr10 20586753 20586924 + 2.5 NA Intergenic Intergenic 34868 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 391-9 chr16 48494180 48494412 + 2.5 NA Intergenic HAL1ME|LINE|L1 -108883 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 457-29 chr7 44083145 44083342 + 2.5 NA promoter-TSS (NR_156113) promoter-TSS (NR_156113) -703 NR_156113 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 717-4 chr15 58535527 58535844 + 2.5 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -36950 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 664.5-3 chr16 11409613 11409888 + 2.5 NA intron (NM_001370704, intron 46 of 66) L1MC4|LINE|L1 -55510 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 301-33 chr6 135680566 135680765 + 2.5 NA intron (NR_152842, intron 4 of 5) MER5B|DNA|hAT-Charlie -171036 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 436-28 chr5 155460236 155460642 + 2.5 NA Intergenic Intergenic 446684 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 475-19 chr20 51006379 51006642 + 2.5 NA intron (NM_002237, intron 2 of 2) intron (NM_002237, intron 2 of 2) 16597 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 487-16 chr15 98482064 98482390 + 2.5 NA intron (NM_182562, intron 3 of 6) MIR3|SINE|MIR 32109 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 453.5-17 chr7 50222472 50222802 + 2.5 NA Intergenic L1MB5|LINE|L1 -81427 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 509-2 chr1 242643261 242643622 + 2.5 NA Intergenic Intergenic -118744 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 619.5-7 chr3 24340711 24341050 + 2.5 NA intron (NM_001354708, intron 1 of 9) L1MC5a|LINE|L1 -153207 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 383-14 chr19 34840374 34840590 + 2.5 NA Intergenic AluJr4|SINE|Alu -7613 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 637-18 chrX 101981277 101981693 + 2.5 NA Intergenic LTR67B|LTR|ERVL -49458 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 453-3 chr1 232150794 232151001 + 2.5 NA Intergenic Intergenic 225063 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 365-29 chr8 25805720 25805954 + 2.5 NA Intergenic Intergenic 239576 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 496-29 chr9 127068914 127069379 + 2.5 NA intron (NM_001190729, intron 7 of 17) intron (NM_001190729, intron 7 of 17) 53489 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 512-10 chr2 22726745 22727228 + 2.5 NA Intergenic L1PA16|LINE|L1 190507 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 271.5-10 chr11 101859938 101860105 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -54989 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 381-12 chr2 9057588 9057854 + 2.5 NA Intergenic L1MEi|LINE|L1 -54037 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 267-45 chr6 107194912 107195057 + 2.5 NA intron (NM_020381, intron 6 of 7) Charlie15b|DNA|hAT-Charlie -79469 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 296.5-23 chr3 144643594 144643786 + 2.5 NA Intergenic Intergenic 670609 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 164.5-18 chr2 184451624 184451689 + 2.5 NA Intergenic Intergenic 72681 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 650-7 chr21 32044919 32045280 + 2.5 NA Intergenic L1MCa|LINE|L1 41196 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 275-42 chr9 31913218 31913429 + 2.5 NA Intergenic Intergenic -471280 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 540-16 chr22 35457005 35457429 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 57077 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 478.5-8 chr18 50926647 50927019 + 2.5 NA intron (NM_002396, intron 12 of 15) L1MEg|LINE|L1 -41207 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 525-12 chr2 104721089 104721403 + 2.5 NA Intergenic L1M5|LINE|L1 36473 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 813-3 chr17 59837336 59837680 + 2.5 NA intron (NM_001329395, intron 11 of 12) intron (NM_001329395, intron 11 of 12) -3758 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 799.5 chr1 80353884 80354306 + 2.5 NA Intergenic Intergenic -181660 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 512-4 chr11 94757344 94757553 + 2.5 NA Intergenic MIR|SINE|MIR -10908 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 352-13 chr19 36851693 36851838 + 2.5 NA promoter-TSS (NM_001242800) promoter-TSS (NM_001242800) 114 NM_001242475 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 751.5-3 chr4 51997680 51998243 + 2.5 NA intron (NM_001024611, intron 3 of 4) intron (NM_001024611, intron 3 of 4) 22402 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 411-18 chr2 58666931 58667198 + 2.5 NA intron (NR_033873, intron 2 of 13) L2b|LINE|L2 146311 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 462-5 chr10 5122574 5122803 + 2.5 NA Intergenic MER92B|LTR|ERV1 28274 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 285-31 chr8 90031103 90031258 + 2.5 NA intron (NM_001330575, intron 7 of 11) MIR|SINE|MIR 29703 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 313.5-6 chr11 27039466 27039640 + 2.5 NA Intergenic L1M2|LINE|L1 -1262 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 875.5 chr20 11803466 11804100 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 66932 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 723-2 chr10 26094248 26094905 + 2.5 NA intron (NM_017433, intron 15 of 34) AluYj4|SINE|Alu -121731 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 716.5-5 chr7 147013834 147014226 + 2.5 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 83579 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 342.5-35 chr9 32838872 32839025 + 2.5 NA Intergenic MER77B|LTR|ERVL 55408 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 464-11 chr18 37984114 37984355 + 2.5 NA Intergenic Intergenic 327099 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 439-14 chr5 3209528 3209717 + 2.5 NA Intergenic Intergenic 31787 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 483.5-12 chr4 80922429 80922951 + 2.5 NA intron (NM_152770, intron 4 of 5) L1ME4a|LINE|L1 -108018 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 441.5-11 chr19 56893431 56893733 + 2.5 NA Intergenic L1MB3|LINE|L1 52680 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 725.5-9 chr6 158905955 158906471 + 2.5 NA intron (NR_160979, intron 2 of 2) L1ME3C|LINE|L1 17736 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 671-9 chr3 38362430 38362897 + 2.5 NA intron (NM_001349178, intron 3 of 19) AluJb|SINE|Alu 15878 NM_001349178 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 561-21 chr4 136530901 136531294 + 2.5 NA Intergenic L1M5|LINE|L1 -617417 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 374-34 chr6 143551849 143552161 + 2.5 NA Intergenic Intergenic 10046 NR_110148 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 447-26 chr7 78531825 78532091 + 2.5 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 184716 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 448.5-15 chr3 194315113 194315395 + 2.5 NA Intergenic Intergenic -2450 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 167-2 chr12 19040629 19040695 + 2.5 NA Intergenic Intergenic -89071 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 309-7 chr11 110657180 110657371 + 2.5 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 54550 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 392.5-8 chr14 45095064 45095358 + 2.5 NA intron (NM_017922, intron 1 of 13) intron (NM_017922, intron 1 of 13) 11095 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 298-10 chr17 63189842 63190069 + 2.5 NA intron (NM_025185, intron 4 of 25) L1MB7|LINE|L1 223720 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 355.5-22 chr9 33469460 33469867 + 2.5 NA exon (NM_022917, exon 5 of 26) exon (NM_022917, exon 5 of 26) -1728 NR_106910 102465512 NR_106910 ENSG00000275651 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 251.5-27 chr8 106927574 106927723 + 2.5 NA Intergenic Intergenic -157404 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 695-9 chr7 82151077 82151428 + 2.5 NA intron (NM_000722, intron 4 of 38) intron (NM_000722, intron 4 of 38) 142075 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 385 chr1 188184529 188184731 + 2.5 NA Intergenic Intergenic 741002 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 470-25 chr3 97066842 97067185 + 2.5 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 252419 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 395-23 chr5 9930951 9931284 + 2.5 NA Intergenic Intergenic -27293 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 319-19 chr2 56335236 56335434 + 2.5 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -149565 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 364-13 chr12 127180028 127180198 + 2.5 NA Intergenic AluJo|SINE|Alu 104170 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 470-2 chr10 55694320 55694544 + 2.5 NA Intergenic Intergenic -66490 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 668.5-6 chr5 161696705 161697276 + 2.5 NA intron (NM_000811, intron 8 of 8) intron (NM_000811, intron 8 of 8) 11269 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 395-4 chr12 30016954 30017159 + 2.5 NA Intergenic Intergenic -232297 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 256-27 chr5 136518430 136518579 + 2.5 NA Intergenic MIRb|SINE|MIR -153028 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 483-20 chr4 67645028 67645289 + 2.5 NA intron (NM_018227, intron 16 of 32) intron (NM_018227, intron 16 of 32) 55997 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 372-26 chr2 197347366 197347563 + 2.5 NA Intergenic Intergenic -36684 NM_001195144 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 517.5-11 chr21 24076398 24076680 + 2.5 NA Intergenic Intergenic 244838 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 307-34 chr8 78252934 78253199 + 2.5 NA Intergenic Intergenic -263274 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 287-34 chr5 23146910 23147070 + 2.5 NA Intergenic Intergenic -293646 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 373.5-7 chr12 39337553 39337770 + 2.5 NA intron (NM_001173464, intron 16 of 37) intron (NM_001173464, intron 16 of 37) 105459 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 333 chr10 26259402 26259557 + 2.5 NA intron (NM_000818, intron 8 of 16) L1MB3|LINE|L1 42705 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 685.5-10 chr9 74861261 74861948 + 2.5 NA intron (NM_017662, intron 1 of 38) MIR|SINE|MIR 25743 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 397.5 chr1 22642239 22642564 + 2.5 NA Intergenic Intergenic -1232 NM_001347619 714 Hs.467753 NM_172369 ENSG00000159189 C1QC C1Q-C|C1QG complement C1q C chain protein-coding 346.5-28 chr7 30803818 30804075 + 2.5 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 32529 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 262-26 chr5 19466332 19466505 + 2.5 NA Intergenic AluJr|SINE|Alu 419854 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 612-2 chr10 17891418 17891914 + 2.5 NA intron (NM_002438, intron 22 of 29) L1MCa|LINE|L1 46559 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 481-18 chr7 28687254 28687739 + 2.5 NA intron (NM_001011666, intron 1 of 6) intron (NM_001011666, intron 1 of 6) 1363 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 538-17 chr8 3742482 3742839 + 2.5 NA intron (NM_033225, intron 6 of 69) intron (NM_033225, intron 6 of 69) -1014209 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 445-3 chr12 101674396 101674653 + 2.5 NA intron (NM_206821, intron 23 of 28) intron (NM_206821, intron 23 of 28) -23116 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 345-35 chr6 56059624 56059869 + 2.5 NA intron (NM_030820, intron 28 of 29) intron (NM_030820, intron 28 of 29) 31916 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 407-30 chr8 46170618 46170916 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 446876 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 748.5-2 chr17 61735127 61735489 + 2.5 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 128251 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 383.5-11 chr2 20369821 20370028 + 2.5 NA Intergenic Intergenic -17671 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 237.5-9 chr18 12962743 12962872 + 2.5 NA intron (NM_031216, intron 3 of 8) intron (NM_031216, intron 3 of 8) 14796 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 238.5-37 chr7 68993564 68993672 + 2.5 NA Intergenic L4_A_Mam|LINE|RTE-X 604006 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 236-29 chr6 34660502 34660598 + 2.5 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -35604 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 463.5-14 chr4 56700138 56700497 + 2.5 NA Intergenic MLT2B4|LTR|ERVL -18611 NM_139212 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 469.5-8 chr15 92256657 92256844 + 2.5 NA Intergenic L1P3|LINE|L1 -137131 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 337.5-11 chr18 57499948 57500184 + 2.5 NA Intergenic L1M5|LINE|L1 64692 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 424.5-16 chr5 24911310 24911584 + 2.5 NA Intergenic AluSx|SINE|Alu -70864 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 392.5-23 chr5 3560640 3561064 + 2.5 NA Intergenic Intergenic -24758 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 279-36 chr9 2957065 2957283 + 2.5 NA Intergenic HAL1ME|LINE|L1 -113079 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 437-32 chr22 49873101 49873344 + 2.5 NA intron (NM_014838, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 19378 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 379.5-14 chr2 182411614 182411864 + 2.5 NA intron (NM_005019, intron 1 of 14) MER20|DNA|hAT-Charlie 15309 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 475-29 chr7 81124295 81124562 + 2.5 NA Intergenic L1PB4|LINE|L1 -202039 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 559-24 chr9 108443932 108444198 + 2.5 NA Intergenic Intergenic 411921 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 298.5-17 chr3 88743547 88743733 + 2.5 NA Intergenic Intergenic -363981 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 310.5-29 chr3 15835261 15835437 + 2.5 NA intron (NM_001349279, intron 1 of 28) intron (NM_001349279, intron 1 of 28) 24465 NM_001349279 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 475-16 chr2 48164906 48165277 + 2.5 NA Intergenic MER45B|DNA|hAT-Tip100 -149591 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 356.5-18 chr16 53373914 53374186 + 2.5 NA intron (NR_119378, intron 1 of 2) intron (NR_119378, intron 1 of 2) 557 NR_119378 102723373 Hs.569678 NR_119378 ENSG00000261804 LOC102723373 - uncharacterized LOC102723373 ncRNA 238-9 chr11 56567109 56567241 + 2.5 NA Intergenic L1PA16|LINE|L1 10546 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 398.5 chr1 53682442 53682690 + 2.5 NA intron (NM_001367484, intron 2 of 10) intron (NM_001367484, intron 2 of 10) 51638 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 337-18 chr20 40063810 40063953 + 2.5 NA Intergenic Intergenic 59420 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 464-7 chr15 95577625 95578000 + 2.5 NA Intergenic Intergenic 144719 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 470.5-14 chr8 118592524 118592744 + 2.5 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -28367 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 420.5-15 chr3 41140284 41140504 + 2.5 NA Intergenic MamRep38|DNA|hAT -59111 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 520-14 chr2 19137904 19138147 + 2.5 NA Intergenic Intergenic -111054 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 468.5-2 chr10 60197994 60198258 + 2.5 NA intron (NM_001204403, intron 15 of 43) intron (NM_001204403, intron 15 of 43) -57110 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 750.5-7 chr4 100629228 100629735 + 2.5 NA Intergenic Intergenic 45632 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 412.5-21 chr3 46263920 46264138 + 2.5 NA intron (NM_001837, intron 2 of 2) intron (NM_001837, intron 2 of 2) 21569 NM_178329 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 661.5-12 chr8 15645799 15646169 + 2.5 NA intron (NM_001356429, intron 2 of 10) intron (NM_001356429, intron 2 of 10) 105721 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 229-18 chr3 118980483 118980612 + 2.5 NA intron (NM_001353325, intron 1 of 7) L1MA4A|LINE|L1 37471 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 442.5-17 chr3 4005117 4005379 + 2.5 NA Intergenic Intergenic -204373 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 420.5-20 chr4 65723213 65723466 + 2.5 NA Intergenic Intergenic -52844 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 717.5-8 chr7 3835357 3835993 + 2.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -294010 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 490-19 chr3 79886901 79887242 + 2.5 NA Intergenic Intergenic -119073 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 396-32 chr8 69599994 69600262 + 2.5 NA intron (NR_132437, intron 1 of 16) intron (NR_132437, intron 1 of 16) 7228 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 350-36 chr7 46169077 46169271 + 2.5 NA Intergenic Intergenic -247902 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 934.5-3 chr21 27174764 27175203 + 2.5 NA Intergenic Intergenic -207895 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 723-3 chr12 26845798 26846304 + 2.5 NA Intergenic Intergenic -12857 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 470-34 chr7 71831945 71832190 + 2.5 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 505324 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 621.5 chr10 98805479 98805873 + 2.5 NA intron (NM_021828, intron 3 of 11) A-rich|Low_complexity|Low_complexity 118892 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 340-19 chr18 42972777 42972942 + 2.5 NA intron (NM_001272077, intron 3 of 5) intron (NM_001272077, intron 3 of 5) 142826 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 385-9 chr14 51611506 51611681 + 2.5 NA intron (NM_001042481, intron 2 of 14) MER5A1|DNA|hAT-Charlie -11641 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 353-16 chr16 27463901 27464170 + 2.5 NA intron (NM_001286242, intron 34 of 36) intron (NM_001286242, intron 34 of 36) -10642 NR_037158 283888 Hs.660935 NR_037158 ENSG00000259954 IL21R-AS1 - IL21R antisense RNA 1 ncRNA 341-32 chr6 150206471 150206630 + 2.5 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 63506 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 281-13 chr12 60279120 60279297 + 2.5 NA Intergenic Intergenic 589838 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 187.5-21 chr3 194677602 194677720 + 2.5 NA Intergenic Intergenic -5470 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 396-20 chr3 167090404 167090583 + 2.5 NA Intergenic Intergenic 191810 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 186.5-21 chr4 60569023 60569131 + 2.5 NA Intergenic L1MA1|LINE|L1 -353542 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 304-14 chr17 66676128 66676419 + 2.5 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -110799 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 660.5-9 chr5 129231629 129232031 + 2.5 NA Intergenic Intergenic 134142 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 447-11 chr18 3463619 3463950 + 2.5 NA Intergenic AluSz|SINE|Alu -2466 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 356-29 chr3 17714211 17714409 + 2.5 NA intron (NM_001349076, intron 1 of 22) L1MB4|LINE|L1 -14290 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 362.5-3 chr10 86776072 86776252 + 2.5 NA intron (NM_004329, intron 1 of 12) Charlie4a|DNA|hAT-Charlie 19523 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 302.5-18 chr2 42408798 42409036 + 2.5 NA Intergenic MER52A|LTR|ERV1 -39960 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 490-17 chr22 34825078 34825464 + 2.5 NA intron (NR_138042, intron 3 of 4) L3|LINE|CR1 172645 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 638.5-3 chr12 127265145 127265478 + 2.5 NA Intergenic MER21A|LTR|ERVL 18972 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 740 chr1 175947753 175948265 + 2.5 NA intron (NM_022457, intron 18 of 19) intron (NM_022457, intron 18 of 19) 20470 NR_162097 113839518 NR_162097 MIR1843 - microRNA 1843 ncRNA 368-13 chr17 82699997 82700226 + 2.5 NA Intergenic Intergenic -1413 NM_006822 10966 Hs.484068 NM_006822 ENSG00000141542 RAB40B RAR|SEC4L RAB40B, member RAS oncogene family protein-coding 731-3 chr18 6959065 6959804 + 2.5 NA exon (NM_005559, exon 54 of 63) exon (NM_005559, exon 54 of 63) 4757 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 256-31 chr8 30363577 30363716 + 2.5 NA Intergenic L1MC4|LINE|L1 -20855 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 206.5-21 chr19 27651981 27652176 + 2.5 NA Intergenic HSAT4|Satellite|centr -141353 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 360-19 chr19 29928791 29928979 + 2.5 NA intron (NM_001252641, intron 1 of 10) intron (NM_001252641, intron 1 of 10) 5228 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 247.5-24 chr7 16153869 16154061 + 2.5 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -56521 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 360-33 chr3 191114563 191114784 + 2.5 NA Intergenic L1M1|LINE|L1 -84568 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 540.5-9 chr7 97607383 97607961 + 2.5 NA Intergenic AluJb|SINE|Alu -124414 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 750.5-3 chr11 59881234 59881886 + 2.5 NA Intergenic Intergenic -15073 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 539.5-17 chr4 44161012 44161315 + 2.5 NA Intergenic Intergenic 144101 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 321-23 chr6 42221492 42221665 + 2.5 NA Intergenic MLT1M|LTR|ERVL-MaLR -3717 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 450.5-16 chr6 157557785 157557998 + 2.5 NA intron (NM_024630, intron 2 of 8) intron (NM_024630, intron 2 of 8) 28759 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 479-28 chrX 107029932 107030481 + 2.5 NA Intergenic MamGyp-int|LTR|Gypsy -29994 NM_024657 79710 Hs.496544 NM_024657 ENSG00000133131 MORC4 ZCW4|ZCWCC2|dJ75H8.2 MORC family CW-type zinc finger 4 protein-coding 450.5-12 chr5 23751972 23752201 + 2.5 NA Intergenic Intergenic -199262 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 771.5 chr2 47935343 47935659 + 2.5 NA Intergenic AluSq2|SINE|Alu -29708 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 736.5-6 chr3 50237290 50237618 + 2.5 NA intron (NM_001282618, intron 1 of 7) intron (NM_001282618, intron 1 of 7) 1250 NM_002070 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 346-33 chr7 83236609 83236920 + 2.5 NA Intergenic Intergenic -73880 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 471-4 chr1 232674239 232674564 + 2.5 NA Intergenic Intergenic -43670 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 484-32 chr7 36170242 36170586 + 2.5 NA intron (NM_030636, intron 2 of 7) AluSx|SINE|Alu 17160 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 520.5-2 chr1 86715841 86716231 + 2.5 NA intron (NM_016009, intron 2 of 8) intron (NM_016009, intron 2 of 8) 11460 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 542.5 chr1 241769566 241769844 + 2.5 NA intron (NM_001367482, intron 17 of 27) intron (NM_001367482, intron 17 of 27) -78486 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 368-42 chr7 47368952 47369129 + 2.5 NA exon (NM_022748, exon 17 of 31) exon (NM_022748, exon 17 of 31) 95763 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 319.5-5 chr11 58743721 58743924 + 2.5 NA Intergenic MER61C|LTR|ERV1 -11848 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 321.5-21 chr2 158896798 158897035 + 2.5 NA Intergenic AluSq2|SINE|Alu -71718 NM_001145909 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 844-6 chrX 5872821 5873248 + 2.5 NA Intergenic Intergenic -353324 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 403-5 chr1 203153258 203153469 + 2.5 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 22463 NM_004997 4608 Hs.927 NM_004997 ENSG00000133055 MYBPH - myosin binding protein H protein-coding 487-11 chr11 11859294 11859656 + 2.5 NA intron (NM_017944, intron 1 of 26) MIR3|SINE|MIR 18052 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 251-23 chr3 29317176 29317322 + 2.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 35937 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 358-17 chr14 70118842 70119003 + 2.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -38705 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 253.5-34 chr8 118647749 118647876 + 2.5 NA intron (NR_038210, intron 2 of 4) L1MA5|LINE|L1 -25849 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 227.5-19 chr4 79373271 79373435 + 2.5 NA Intergenic AluSx1|SINE|Alu 34875 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 435-35 chr8 62393131 62393484 + 2.5 NA intron (NM_001304533, intron 1 of 6) L1M4|LINE|L1 144453 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 315.5-3 chr1 117805081 117805351 + 2.5 NA Intergenic MIRb|SINE|MIR 124405 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 474-7 chr14 28542023 28542246 + 2.5 NA Intergenic Intergenic 223185 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 599-13 chr5 28315618 28315921 + 2.5 NA Intergenic Intergenic -28104 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 449.5-4 chr12 68263419 68263676 + 2.5 NA Intergenic L2b|LINE|L2 -9943 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 519.5-9 chr2 229763763 229764034 + 2.5 NA TTS (NM_001284215) TTS (NM_001284215) -49343 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 362.5-23 chr4 38415341 38415757 + 2.5 NA Intergenic Intergenic 48635 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 507-32 chr6 104996320 104996569 + 2.5 NA intron (NM_001004317, intron 2 of 3) MER90|LTR|ERV1 39337 NM_001004317 389421 Hs.23616 NM_001004317 ENSG00000187772 LIN28B CSDD2 lin-28 homolog B protein-coding 489.5-8 chr15 92984576 92984932 + 2.5 NA intron (NM_001271, intron 25 of 38) intron (NM_001271, intron 25 of 38) 80355 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 479-6 chr12 79855423 79856045 + 2.5 NA intron (NM_001244990, intron 3 of 24) MER46C|DNA|TcMar-Tigger 58177 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 653.5-11 chr4_GL000008v2_random 2038 2403 + 2.5 NA Intergenic Intergenic 175951 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 440-36 chr7 79802820 79803014 + 2.5 NA Intergenic Intergenic -331914 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 829-4 chr21 30043079 30043704 + 2.5 NA Intergenic L1M4|LINE|L1 -103339 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 533.5-7 chr2 35622334 35622711 + 2.5 NA Intergenic Intergenic 151117 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 540.5-3 chr11 27241612 27241913 + 2.5 NA Intergenic Intergenic -21649 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 220-18 chr2 116382441 116382629 + 2.5 NA Intergenic L1MCb|LINE|L1 1038720 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 150.5-8 chr16 61899554 61899664 + 2.5 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 136829 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 239.5-30 chrX 42628273 42628428 + 2.5 NA Intergenic Intergenic 149813 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 588-17 chr18 79426485 79426809 + 2.5 NA intron (NM_001278672, intron 2 of 8) intron (NM_001278672, intron 2 of 8) 26348 NM_001278672 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 327-10 chr11 85517258 85517425 + 2.5 NA intron (NM_001142699, intron 3 of 27) L1MA3|LINE|L1 109929 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 373-5 chr10 65377482 65377839 + 2.5 NA Intergenic Intergenic -193765 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 563-19 chr8 142766958 142767252 + 2.5 NA intron (NM_023946, intron 3 of 4) intron (NM_023946, intron 3 of 4) 2723 NM_001356372 432355 Hs.158665 NM_177458 ENSG00000283992 SLURP2 SLURP-2 secreted LY6/PLAUR domain containing 2 protein-coding 475.5-6 chr14 33309139 33309430 + 2.5 NA intron (NM_173159, intron 3 of 11) LFSINE_Vert|SINE|tRNA 370405 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 400-31 chr9 98739991 98740307 + 2.5 NA intron (NM_173551, intron 14 of 14) intron (NM_173551, intron 14 of 14) -31214 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 428 chr1 89119667 89119979 + 2.5 NA intron (NM_004120, intron 4 of 10) L2a|LINE|L2 6291 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 890-5 chr4 36472696 36473220 + 2.5 NA Intergenic Intergenic -46530 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 293-23 chr5 78793644 78793796 + 2.5 NA intron (NM_000046, intron 6 of 7) L2c|LINE|L2 -144948 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 269.5-45 chr6 81301621 81301829 + 2.5 NA Intergenic Charlie5|DNA|hAT-Charlie 450956 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 413.5-17 chr5 117624116 117624366 + 2.5 NA Intergenic Intergenic -106120 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 597 chr10 80126098 80126568 + 2.5 NA Intergenic Intergenic -5328 NR_138551 219348 Hs.204947 NM_001012973 ENSG00000189129 PLAC9 - placenta associated 9 protein-coding 596.5-3 chr14 52056895 52057170 + 2.5 NA intron (NM_007361, intron 3 of 21) intron (NM_007361, intron 3 of 21) 12027 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 361.5-19 chr22 30761986 30762186 + 2.5 NA intron (NM_030758, intron 2 of 13) AluSz|SINE|Alu -2167 NM_001282740 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 614-8 chr19 31462040 31462439 + 2.5 NA Intergenic HAL1|LINE|L1 -112803 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 642.5-4 chr3 4441127 4441544 + 2.5 NA intron (NM_001164674, intron 2 of 7) MER1A|DNA|hAT-Charlie 25934 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 533-6 chr11 26345873 26346338 + 2.5 NA intron (NM_031418, intron 1 of 26) MIRb|SINE|MIR 13975 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 458.5-6 chr12 33518226 33518451 + 2.5 NA Intergenic Intergenic -78519 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 513-29 chr7 44691201 44691494 + 2.5 NA intron (NM_002541, intron 10 of 22) AluJb|SINE|Alu -57219 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 294-18 chr17 65337291 65337452 + 2.5 NA Intergenic L1MC3|LINE|L1 -120170 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 429-33 chr6 163022663 163022870 + 2.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 31395 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 699-13 chr7 33800375 33800784 + 2.5 NA Intergenic Intergenic -104336 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 520-11 chr16 47667545 47667789 + 2.5 NA intron (NM_001031835, intron 26 of 31) intron (NM_001031835, intron 26 of 31) -190914 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 271-11 chr18 6097345 6097460 + 2.5 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -159342 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 373.5-12 chr19 33481112 33481491 + 2.5 NA intron (NM_001166056, intron 6 of 12) AluSq2|SINE|Alu 40490 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 612.5-10 chr3 17357361 17357657 + 2.5 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 342511 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 388-22 chr2 206828540 206828859 + 2.5 NA Intergenic Intergenic -45391 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 444.5-4 chr15 94351417 94351663 + 2.5 NA intron (NM_018349, intron 7 of 21) intron (NM_018349, intron 7 of 21) -4390 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 292.5-28 chr6 139175197 139175377 + 2.5 NA intron (NM_016217, intron 3 of 3) intron (NM_016217, intron 3 of 3) 40207 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 479.5-16 chr7 91278437 91278708 + 2.5 NA Intergenic Intergenic 14139 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 398-7 chr14 52956161 52956350 + 2.5 NA Intergenic L1MB7|LINE|L1 -5158 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 679.5-11 chr8 78751867 78752197 + 2.5 NA intron (NM_001199886, intron 2 of 4) L1MA5|LINE|L1 -27658 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 319.5 chr1 28912057 28912307 + 2.5 NA intron (NM_001166007, intron 1 of 17) L2a|LINE|L2 -2394 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 555-15 chr20 22645181 22645697 + 2.5 NA Intergenic Intergenic -37922 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 373-3 chr1 184706771 184706955 + 2.5 NA intron (NR_135118, intron 17 of 20) intron (NR_135118, intron 17 of 20) 47995 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 404.5-19 chr5 117303082 117303390 + 2.5 NA Intergenic Intergenic -112276 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 285.5-4 chr11 100079498 100079749 + 2.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 523478 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 323 chr1 200833553 200833820 + 2.5 NA intron (NM_001297707, intron 7 of 17) intron (NM_001297707, intron 7 of 17) -39295 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 573.5-13 chr9 129893082 129893311 + 2.5 NA intron (NM_015033, intron 16 of 16) intron (NM_015033, intron 16 of 16) 23591 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 675-12 chr8 79096720 79097053 + 2.5 NA Intergenic MIR3|SINE|MIR -235302 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 154.5-22 chr6 130985686 130985774 + 2.5 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 15037 NM_001252660 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 407.5-3 chr10 91616750 91617008 + 2.5 NA Intergenic L1ME3E|LINE|L1 -5419 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 633-5 chr3 78789371 78789676 + 2.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 229936 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 210.5-22 chr5 94668872 94669027 + 2.5 NA intron (NM_032290, intron 12 of 20) L2a|LINE|L2 50280 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 272.5-8 chr11 64482177 64482305 + 2.5 NA Intergenic Intergenic 33184 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 275-19 chr2 39022725 39022955 + 2.5 NA exon (NM_005633, exon 10 of 23) exon (NM_005633, exon 10 of 23) -62496 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 273.5-34 chr8 125405466 125405663 + 2.5 NA Intergenic (ATG)n|Simple_repeat|Simple_repeat -24794 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 562.5-18 chr3 15933173 15933443 + 2.5 NA Intergenic MIRb|SINE|MIR 59537 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 590.5-6 chr11 7404060 7404505 + 2.5 NA intron (NM_175733, intron 3 of 6) L1ME1|LINE|L1 61553 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 252.5-21 chr5 52847544 52847792 + 2.5 NA intron (NM_181501, intron 1 of 28) AluSx|SINE|Alu 59752 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 392-18 chr2 13754771 13755081 + 2.5 NA Intergenic Intergenic 646032 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 337-27 chr6 156480509 156480696 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 101852 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 334.5-9 chr12 113756267 113756502 + 2.5 NA intron (NR_110025, intron 1 of 1) SVA_B|Retroposon|SVA 17299 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 275.5-13 chr17 68435359 68435509 + 2.5 NA intron (NM_001320772, intron 5 of 11) intron (NM_001320772, intron 5 of 11) -10886 NR_030365 693220 NR_030365 ENSG00000207561 MIR635 MIRN635|hsa-mir-635 microRNA 635 ncRNA 401.5-13 chr2 16082333 16082626 + 2.5 NA intron (NR_126559, intron 3 of 3) MER96B|DNA|hAT-Tip100 32052 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 651-5 chr2 119451094 119451508 + 2.5 NA intron (NM_002980, intron 9 of 12) intron (NM_002980, intron 9 of 12) 19447 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 336-22 chr16 64437710 64437930 + 2.5 NA Intergenic Intergenic 684243 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 648-6 chr17 81671974 81672696 + 2.5 NA intron (NM_199287, intron 5 of 5) FLAM_C|SINE|Alu 5598 NM_199287 339230 Hs.744125 NM_199287 ENSG00000185298 CCDC137 RaRF coiled-coil domain containing 137 protein-coding 610-7 chr2 66661010 66661418 + 2.5 NA intron (NR_110156, intron 1 of 5) L1PA13|LINE|L1 42013 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 280-29 chr4 88258031 88258208 + 2.5 NA 3' UTR (NM_152542, exon 7 of 7) 3' UTR (NM_152542, exon 7 of 7) 26442 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 447-14 chr2 52521642 52521899 + 2.5 NA Intergenic Intergenic 151122 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 401.5-12 chr17 66412628 66412892 + 2.5 NA non-coding (NR_110822, exon 3 of 4) non-coding (NR_110822, exon 3 of 4) 4094 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 277-19 chr17 54572148 54572309 + 2.5 NA Intergenic Intergenic -328463 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 592.5-3 chr1 218731332 218731669 + 2.5 NA intron (NR_031644, intron 4 of 6) L2|LINE|L2 187011 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 261.5-5 chr10 30519775 30519944 + 2.5 NA Intergenic MER21A|LTR|ERVL 85213 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 316-34 chr5 102778712 102778905 + 2.5 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) 23503 NM_001364585 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 292.5-20 chr3 47617341 47617578 + 2.5 NA intron (NM_003074, intron 25 of 27) intron (NM_003074, intron 25 of 27) -37219 NM_001206945 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 536.5-12 chr21 33981347 33981629 + 2.5 NA Intergenic Intergenic 5106 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 379.5-22 chr8 122791123 122791356 + 2.5 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 9584 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 564 chr1 71504129 71504464 + 2.5 NA intron (NM_173808, intron 6 of 6) HERVP71A-int|LTR|ERV1 332716 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 460-5 chr10 95548998 95549401 + 2.5 NA intron (NM_001290295, intron 1 of 24) MER3|DNA|hAT-Charlie 12172 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 449.5-12 chr3 158302753 158303242 + 2.5 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) 192908 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 280.5-12 chr2 16493925 16494111 + 2.5 NA Intergenic Intergenic 171816 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 378.5-17 chr2 124330680 124330885 + 2.5 NA intron (NM_130773, intron 3 of 23) LTR49-int|LTR|ERV1 305495 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 591-12 chr7 32482368 32482698 + 2.5 NA Intergenic MLT2B3|LTR|ERVL 7847 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 655.5 chr10 4554266 4554559 + 2.5 NA Intergenic Intergenic -101744 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 402.5-9 chr15 52377995 52378242 + 2.5 NA intron (NM_001142495, intron 18 of 39) intron (NM_001142495, intron 18 of 39) -82314 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 367.5-25 chr4 31361607 31361787 + 2.5 NA Intergenic LTR33B|LTR|ERVL -144847 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 717.5-7 chr5 166585591 166585936 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 340607 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 460-12 chr2 12689196 12689400 + 2.5 NA Intergenic Intergenic -27574 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 490-31 chr5 177543025 177543231 + 2.5 NA intron (NM_001190946, intron 1 of 8) intron (NM_001190946, intron 1 of 8) 10967 NM_001366498 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 454.5-31 chr8 140850830 140851251 + 2.5 NA intron (NR_148037, intron 6 of 34) MIRc|SINE|MIR -118387 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 487.5-14 chr2 64826165 64826479 + 2.5 NA Intergenic MER34A1|LTR|ERV1 37309 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 410.5-18 chr5 174208161 174208422 + 2.5 NA Intergenic MamRTE1|LINE|RTE-BovB -128063 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 370-34 chr8 121624488 121624717 + 2.5 NA intron (NM_005328, intron 2 of 3) intron (NM_005328, intron 2 of 3) -14744 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 528-11 chr14 94691744 94691982 + 2.5 NA Intergenic Intergenic 51138 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 385.5-18 chr17 39510484 39510785 + 2.5 NA intron (NM_015083, intron 7 of 13) AluSp|SINE|Alu 49148 NM_016507 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 555-30 chrX 152459648 152460006 + 2.5 NA Intergenic L1MA7|LINE|L1 -8512 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 325-2 chr1 150196074 150196403 + 2.5 NA Intergenic Intergenic 35510 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 372.5-6 chr14 68704182 68704438 + 2.5 NA Intergenic Intergenic -75523 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 519-10 chr17 77519583 77519792 + 2.5 NA Intergenic AluSg|SINE|Alu -7314 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 838-9 chr8 136515870 136516409 + 2.5 NA Intergenic Intergenic -14659 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 984-2 chr5 151946619 151947276 + 2.5 NA Intergenic Intergenic -11951 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 276-20 chr17 78007676 78007872 + 2.5 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 3537 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 442.5-10 chr16 55214847 55215263 + 2.5 NA Intergenic Intergenic -109504 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 391.5-15 chr19 28961221 28961619 + 2.5 NA Intergenic LTR8B|LTR|ERV1 -3711 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 229.5-28 chr3 177322653 177322852 + 2.5 NA non-coding (NR_047465, exon 2 of 2) non-coding (NR_047465, exon 2 of 2) 28310 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 408.5-13 chr2 201575066 201575236 + 2.5 NA intron (NM_001168221, intron 6 of 15) intron (NM_001168221, intron 6 of 15) 44027 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 490.5-19 chr7 36749098 36749518 + 2.5 NA Intergenic L1MB3|LINE|L1 -24759 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 367.5-13 chr15 92147854 92148059 + 2.5 NA intron (NR_135775, intron 8 of 10) AluSz|SINE|Alu -245925 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 529-7 chr15 56504962 56505495 + 2.5 NA Intergenic L1PA13|LINE|L1 -40091 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 396.5-30 chr7 94012353 94012603 + 2.5 NA Intergenic Intergenic -8123 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 577.5 chr1 69870625 69871129 + 2.5 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -48445 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 783-9 chr5 99105879 99106258 + 2.5 NA Intergenic Intergenic -176354 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 356-30 chr3 156910000 156910277 + 2.5 NA intron (NM_001004316, intron 3 of 12) intron (NM_001004316, intron 3 of 12) 83785 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 658-10 chr3 98935202 98935717 + 2.5 NA Intergenic L1PA16|LINE|L1 -33764 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 727.5-8 chr6 155327263 155327604 + 2.5 NA Intergenic MIR3|SINE|MIR -12949 NM_001350501 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 477.5-13 chr14 67225124 67225646 + 2.5 NA intron (NM_173526, intron 8 of 8) intron (NM_173526, intron 8 of 8) -16050 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 689.5-2 chr13 37006656 37007074 + 2.5 NA intron (NM_181503, intron 7 of 10) intron (NM_181503, intron 7 of 10) 6079 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 442-22 chr8 126660491 126660710 + 2.5 NA Intergenic LTR32|LTR|ERVL -102122 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 289-5 chr1 178851166 178851337 + 2.5 NA exon (NM_004673, exon 6 of 6) exon (NM_004673, exon 6 of 6) 19826 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 628-3 chr1 111614891 111615425 + 2.5 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -4625 NM_002884 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 389-30 chr3 27726727 27726937 + 2.5 NA Intergenic Intergenic -4117 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 534-2 chr10 63231469 63231838 + 2.5 NA intron (NM_001322252, intron 2 of 24) AluSz|SINE|Alu 37570 NM_001282948 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 524-7 chr18 5813414 5813815 + 2.5 NA Intergenic MIRb|SINE|MIR -27081 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 486-10 chr12 95781515 95781816 + 2.5 NA intron (NM_001329701, intron 2 of 9) intron (NM_001329701, intron 2 of 9) 8530 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 461-26 chr5 172467666 172467943 + 2.5 NA Intergenic L1MDa|LINE|L1 -13279 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 494.5-14 chr7 51786253 51786605 + 2.5 NA Intergenic Intergenic -393173 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 438.5-15 chrX 73292666 73292869 + 2.5 NA Intergenic L1PB1|LINE|L1 -77916 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 737 chr1 86935639 86936209 + 2.5 NA intron (NM_012262, intron 1 of 6) L1MC4a|LINE|L1 21289 NM_001134492 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 292-21 chr21 28354288 28354415 + 2.5 NA Intergenic Intergenic -125684 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 702.5-2 chr17 53506449 53506921 + 2.5 NA Intergenic L1MA3|LINE|L1 -316242 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 411-4 chr1 152801912 152802164 + 2.5 NA Intergenic Intergenic 4613 NM_178351 353133 NM_178351 ENSG00000197084 LCE1C LEP3 late cornified envelope 1C protein-coding 235.5-22 chr5 13426475 13426648 + 2.5 NA Intergenic Intergenic -393675 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 551-9 chr12 1989660 1989983 + 2.5 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) 14636 NM_001319292 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 419-2 chr1 52844186 52844374 + 2.5 NA intron (NM_001307931, intron 1 of 12) intron (NM_001307931, intron 1 of 12) 1520 NM_001307931 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 724.5-2 chr10 42656148 42656634 + 2.5 NA Intergenic Intergenic -17554 NR_130950 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 331.5-13 chr2 27766708 27766884 + 2.5 NA Intergenic FLAM_C|SINE|Alu -4921 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 294-36 chr7 112291030 112291178 + 2.5 NA intron (NM_021994, intron 2 of 11) intron (NM_021994, intron 2 of 11) 84409 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 389-39 chr6 53020721 53020887 + 2.5 NA intron (NM_014920, intron 5 of 13) intron (NM_014920, intron 5 of 13) 25184 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 404.5-9 chr17 70096694 70096926 + 2.5 NA intron (NM_001270422, intron 1 of 5) intron (NM_001270422, intron 1 of 5) -8035 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 340-3 chr1 101172589 101172772 + 2.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 63848 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 385.5-22 chr2 32402787 32403072 + 2.5 NA intron (NM_016252, intron 8 of 73) intron (NM_016252, intron 8 of 73) 45901 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 397-26 chr4 186668115 186668296 + 2.5 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 55651 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 436.5-2 chr10 86467025 86467302 + 2.5 NA intron (NM_001318328, intron 9 of 18) intron (NM_001318328, intron 9 of 18) 54621 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 662.5-5 chr20 18486040 18486341 + 2.5 NA TTS (NM_006606) TTS (NM_006606) 11035 NM_006606 10741 Hs.69330 NM_006606 ENSG00000089050 RBBP9 BOG|RBBP10 RB binding protein 9, serine hydrolase protein-coding 588.5-16 chr8 103175813 103176084 + 2.5 NA intron (NM_001024372, intron 1 of 1) MIRb|SINE|MIR -3808 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 398-32 chr7 15349487 15349686 + 2.5 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 212429 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 471.5-11 chr2 22067636 22067940 + 2.5 NA Intergenic Intergenic -357136 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 612.5-8 chr20 1447150 1447411 + 2.5 NA intron (NM_018839, intron 6 of 7) intron (NM_018839, intron 6 of 7) 20412 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 470.5-10 chr4 104212972 104213190 + 2.5 NA Intergenic L1PA13|LINE|L1 -277884 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 522.5-14 chr7 28346681 28347034 + 2.5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 47536 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 672-9 chr2 111197313 111197702 + 2.5 NA intron (NR_136162, intron 4 of 4) MLT1G1|LTR|ERVL-MaLR 76593 NM_001204109 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 436.5-23 chrUn_KI270519v1 79789 80031 + 2.5 NA NA ALR/Alpha|Satellite|centr NA NA 249.5-20 chr3 2479912 2480054 + 2.5 NA intron (NM_175607, intron 3 of 24) L1MC|LINE|L1 241154 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 266.5-3 chr1 204855785 204855925 + 2.5 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) 27201 NM_015090 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 656-16 chr9 104352868 104353225 + 2.5 NA Intergenic AluJr|SINE|Alu 82817 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 584.5-10 chr6 12632315 12632927 + 2.5 NA Intergenic Intergenic -47217 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 276-37 chr4 87431105 87431380 + 2.5 NA intron (NM_024047, intron 1 of 7) L1M3|LINE|L1 8645 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 352.5-28 chr7 10770062 10770346 + 2.5 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 9740 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 547-2 chr1 206455854 206456103 + 2.5 NA 3' UTR (NM_001300952, exon 20 of 20) 3' UTR (NM_001300952, exon 20 of 20) -14498 NM_001193321 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 529-10 chr17 50322801 50323199 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -23126 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 761-6 chr4 107514750 107515081 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 205319 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 390-30 chr7 120686390 120686675 + 2.5 NA intron (NM_012281, intron 1 of 5) MER50|LTR|ERV1 171612 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 490-29 chr5 148028888 148029415 + 2.5 NA Intergenic AluSp|SINE|Alu -34821 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 470-5 chr11 50209958 50210181 + 2.5 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 88393 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 349.5-21 chr3 98512860 98513117 + 2.5 NA Intergenic Intergenic 9914 NM_001040181 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745|Z38 claudin domain containing 1 protein-coding 488.5-11 chr6 112715268 112715780 + 2.5 NA Intergenic Intergenic 368194 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 645.5-5 chr16 68139254 68139736 + 2.5 NA intron (NM_004555, intron 3 of 10) intron (NM_004555, intron 3 of 10) 54125 NM_173163 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 658.5-7 chr2 217638899 217639271 + 2.5 NA intron (NR_026597, intron 1 of 12) L1MB2|LINE|L1 117508 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 233.5-8 chr14 52076192 52076311 + 2.5 NA Intergenic Intergenic -7192 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 474.5-6 chr16 5543323 5543691 + 2.5 NA Intergenic L1ME1|LINE|L1 72743 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 270-3 chr10 91274488 91274705 + 2.5 NA intron (NM_001256549, intron 9 of 9) L2b|LINE|L2 53933 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 582-7 chr14 51505885 51506160 + 2.5 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 16894 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 279-7 chr14 32734482 32734645 + 2.5 NA intron (NM_004274, intron 10 of 13) intron (NM_004274, intron 10 of 13) -204316 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 453-25 chr5 144314117 144314399 + 2.5 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 108867 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 408.5-17 chr3 37260619 37260883 + 2.5 NA intron (NM_002078, intron 2 of 23) intron (NM_002078, intron 2 of 23) -16556 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 370-13 chr17 7744772 7745086 + 2.5 NA intron (NM_020877, intron 12 of 85) intron (NM_020877, intron 12 of 85) -9391 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 319-3 chr11 22921228 22921399 + 2.5 NA Intergenic L1MD2|LINE|L1 -60839 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 542.5-24 chr5 30719635 30720041 + 2.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -473848 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 386.5-17 chr3 142135187 142135461 + 2.5 NA intron (NM_001178139, intron 1 of 12) intron (NM_001178139, intron 1 of 12) 14220 NM_001178138 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 269.5-10 chr12 45219026 45219160 + 2.5 NA intron (NM_001025356, intron 1 of 19) AluJo|SINE|Alu 2998 NM_001204803 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 706.5-2 chr4 31078481 31079039 + 2.5 NA intron (NM_001173523, intron 2 of 2) L1ME3Cz|LINE|L1 -92384 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 253 chr1 204899647 204899748 + 2.5 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) -44529 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 472-14 chr5 14464363 14464630 + 2.5 NA TTS (NR_145815) TTS (NR_145815) 513 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 422-14 chr17 69761010 69761206 + 2.5 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 167121 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 706.5-3 chr6 108874913 108875299 + 2.5 NA intron (NM_001286609, intron 3 of 16) intron (NM_001286609, intron 3 of 16) 26684 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 542-18 chr4 99134388 99134734 + 2.5 NA intron (NR_037884, intron 2 of 9) intron (NR_037884, intron 2 of 9) 9737 NM_000670 127 Hs.1219 NM_000670 ENSG00000198099 ADH4 ADH-2|HEL-S-4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 475.5-11 chr2 119926350 119926635 + 2.5 NA intron (NM_002830, intron 12 of 26) intron (NM_002830, intron 12 of 26) -86585 NM_020909 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 491.5-10 chr18 76146394 76146748 + 2.5 NA Intergenic Intergenic 23573 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 371.5-21 chr3 120559143 120559438 + 2.5 NA Intergenic Intergenic -37046 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 628.5-11 chr8 81303994 81304424 + 2.5 NA Intergenic Intergenic 23673 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 576.5-8 chr8 140883477 140883793 + 2.5 NA intron (NR_148037, intron 4 of 34) L3|LINE|CR1 117369 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 400.5-10 chr2 100060643 100060840 + 2.5 NA intron (NM_001025108, intron 2 of 23) L1MC3|LINE|L1 44842 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 306.5-30 chr5 10309526 10309732 + 2.5 NA Intergenic Intergenic -1727 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 371.5-23 chr5 22551992 22552178 + 2.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 301259 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 581.5-7 chr16 76045217 76045723 + 2.5 NA Intergenic Intergenic -231931 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 215-14 chr15 68941432 68941533 + 2.5 NA intron (NM_001184780, intron 1 of 15) MLT1D|LTR|ERVL-MaLR 10957 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 287-2 chr1 53883364 53883602 + 2.5 NA intron (NR_135075, intron 1 of 8) MIRb|SINE|MIR 6314 NR_036640 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 340.5-7 chr12 41276679 41276846 + 2.5 NA intron (NM_001164595, intron 3 of 9) MIRb|SINE|MIR 88442 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 499-3 chr10 44020106 44020501 + 2.5 NA Intergenic Intergenic 107901 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 359.5-35 chr6 157092834 157092988 + 2.5 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 56484 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 506-20 chr4 30367851 30368167 + 2.5 NA Intergenic MER2B|DNA|TcMar-Tigger -352360 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 354.5-26 chr3 125430191 125430332 + 2.5 NA Intergenic AluSx|SINE|Alu -54907 NM_001348430 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 214-15 chr4 129619273 129619446 + 2.5 NA Intergenic HAL1b|LINE|L1 152119 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 421.5-25 chr7 46505957 46506419 + 2.5 NA Intergenic L1MA2|LINE|L1 190934 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 427-15 chr2 12865089 12865450 + 2.5 NA Intergenic AluSc8|SINE|Alu 127902 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 390.5-16 chr20 10702541 10702906 + 2.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -28724 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 585-7 chr2 160834334 160834753 + 2.5 NA Intergenic Intergenic -302412 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 515-4 chr11 28004425 28004780 + 2.5 NA Intergenic MER65-int|LTR|ERV1 -52213 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 733-4 chr22 34191929 34192376 + 2.5 NA Intergenic L2a|LINE|L2 -269264 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 454.5-18 chr5 155128881 155129186 + 2.5 NA Intergenic L2c|LINE|L2 115278 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 219.5-10 chr14 50365181 50365375 + 2.5 NA intron (NM_001282236, intron 2 of 8) L1M5|LINE|L1 31603 NM_004196 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 321-24 chr6 68958276 68958435 + 2.5 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 323073 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 344.5-5 chr10 85044353 85044601 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 154428 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 328.5-22 chr2 106098807 106099092 + 2.5 NA intron (NM_025076, intron 12 of 14) intron (NM_025076, intron 12 of 14) 33261 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 635.5-12 chr7 1412884 1413332 + 2.5 NA Intergenic CpG 46362 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 351.5-24 chr9 8187986 8188265 + 2.5 NA Intergenic Intergenic -388347 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 711.5-2 chr11 115465537 115465999 + 2.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 38647 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 550-17 chr3 114968882 114969209 + 2.5 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -68420 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 132.5-7 chr11 37403195 37403325 + 2.5 NA Intergenic Intergenic -535341 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 563-10 chr22 24212695 24213131 + 2.5 NA Intergenic MER53|DNA|hAT 31426 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 467.5-11 chr3 3398025 3398286 + 2.5 NA Intergenic L1PA15|LINE|L1 -218438 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 698-12 chr7 14888270 14888730 + 2.5 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 14251 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 380.5 chr1 53513295 53513616 + 2.5 NA intron (NM_147193, intron 7 of 9) L2b|LINE|L2 54056 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 648 chr10 83381092 83381423 + 2.5 NA Intergenic L1MC2|LINE|L1 295832 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 237-25 chr7 12200461 12200606 + 2.5 NA Intergenic Intergenic -10761 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 272.5-19 chr2 34109385 34109578 + 2.5 NA intron (NR_126403, intron 4 of 5) L1ME1|LINE|L1 42255 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 359-3 chr1 72941215 72941536 + 2.5 NA Intergenic Intergenic -364795 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 168.5-17 chr20 46291366 46291457 + 2.5 NA intron (NM_021248, intron 1 of 11) MIR|SINE|MIR 17087 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 382.5-22 chr8 27368536 27369001 + 2.5 NA intron (NM_173175, intron 1 of 29) intron (NM_173175, intron 1 of 29) 43204 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 518-7 chr13 54889895 54890354 + 2.5 NA Intergenic Intergenic -284330 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 730-3 chr12 115849291 115849825 + 2.5 NA Intergenic LTR16C|LTR|ERVL 299096 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 341-25 chr4 63736528 63736730 + 2.5 NA Intergenic Intergenic 672821 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 295-12 chr14 57926411 57926643 + 2.5 NA Intergenic Intergenic -60435 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 411-2 chr1 64716777 64717118 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie -28026 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 367.5-14 chr16 31317818 31318090 + 2.5 NA intron (NM_001145808, intron 14 of 29) L1M4c|LINE|L1 -37222 NM_000887 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 536.5-15 chr6 114600012 114600310 + 2.5 NA Intergenic L1MEg|LINE|L1 -537284 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 636-17 chr4 44981190 44981503 + 2.5 NA Intergenic Intergenic -254712 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 412-31 chr8 25754073 25754390 + 2.5 NA Intergenic L1ME2|LINE|L1 291182 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 229-7 chr11 37140305 37140404 + 2.5 NA Intergenic Intergenic -542075 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 372.5-7 chr17 13161945 13162184 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -144000 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 477-16 chr3 128498628 128498956 + 2.5 NA intron (NR_125398, intron 2 of 2) intron (NR_125398, intron 2 of 2) -5605 NM_032638 2624 Hs.367725 NM_032638 ENSG00000179348 GATA2 DCML|IMD21|MONOMAC|NFE1B GATA binding protein 2 protein-coding 352.5-17 chr21 15322024 15322201 + 2.5 NA Intergenic L1MA5|LINE|L1 -257112 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 176.5-12 chr2 207303113 207303255 + 2.5 NA Intergenic L1MB8|LINE|L1 -33760 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 241.5-12 chr15 59679447 59679593 + 2.5 NA intron (NM_001368060, intron 3 of 8) intron (NM_001368060, intron 3 of 8) 9406 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 400.5-17 chr4 79829397 79829625 + 2.5 NA intron (NR_026555, intron 1 of 1) L1MB8|LINE|L1 2040 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 313.5-41 chr7 104057698 104057839 + 2.5 NA Intergenic L1MEg|LINE|L1 -68110 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 717.5-10 chr8 134405894 134406297 + 2.5 NA Intergenic Intergenic -191976 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 429.5-18 chr6 14455725 14456052 + 2.5 NA Intergenic Intergenic -170434 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 379.5-28 chr9 132308764 132309012 + 2.5 NA intron (NM_001351527, intron 11 of 25) AluSz|SINE|Alu 45968 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 686.5-7 chr5 123709891 123710272 + 2.5 NA Intergenic Intergenic 164664 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 219-37 chr8 99598544 99598657 + 2.5 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -61739 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 376-25 chr5 113828074 113828469 + 2.5 NA Intergenic MIRb|SINE|MIR 314577 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 391-2 chr1 212936287 212936469 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL -14163 NM_001136475 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 385-6 chr11 102861456 102861640 + 2.5 NA Intergenic Intergenic 13434 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 1130.5-2 chr7 54908876 54909630 + 2.5 NA Intergenic L1MEc|LINE|L1 -109764 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 541-6 chr2 29892927 29893236 + 2.5 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 28505 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 864-2 chr10 54645394 54645811 + 2.5 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -37645 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 691.5-7 chr4 54486188 54486606 + 2.5 NA Intergenic Intergenic 120734 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 533.5-8 chr2 81121528 81121855 + 2.5 NA Intergenic L1MB7|LINE|L1 345255 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 687.5-7 chr7 47304750 47305078 + 2.5 NA exon (NM_022748, exon 21 of 31) exon (NM_022748, exon 21 of 31) 159889 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 295-16 chr17 60445167 60445304 + 2.5 NA 3' UTR (NM_001282476, exon 12 of 12) 3' UTR (NM_001282476, exon 12 of 12) 22746 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 393-37 chr9 32856197 32856354 + 2.5 NA Intergenic Intergenic 72735 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 247.5-17 chr21 32197144 32197320 + 2.5 NA Intergenic Intergenic 81817 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 527-4 chr1 147156676 147157094 + 2.5 NA non-coding (NR_103871, exon 7 of 7) non-coding (NR_103871, exon 7 of 7) 15585 NR_103871 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 368-45 chr9 6935592 6935875 + 2.5 NA intron (NR_148680, intron 8 of 21) intron (NR_148680, intron 8 of 21) 178383 NM_001353997 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 266-17 chr17 53101421 53101595 + 2.5 NA Intergenic Intergenic 116003 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 376-30 chr7 72041964 72042240 + 2.5 NA intron (NM_001363460, intron 3 of 5) MamRep1879|DNA|hAT-Tip100? 295289 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 411-39 chr8 53411726 53412073 + 2.5 NA Intergenic Intergenic 112066 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 344.5-14 chr2 154183759 154183897 + 2.5 NA intron (NM_052917, intron 4 of 12) L1M4c|LINE|L1 239434 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 246-14 chr8 109272499 109272674 + 2.5 NA intron (NM_032869, intron 7 of 9) intron (NM_032869, intron 7 of 9) 57347 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 265-3 chr10 5659515 5659638 + 2.5 NA intron (NR_037164, intron 1 of 6) L2c|LINE|L2 7019 NM_024701 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 595.5-5 chr17 15779365 15779688 + 2.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -7324 NR_002211 4213 Hs.356135 NR_002211 MEIS3P1 MEIS3|MEIS4|MRG2 Meis homeobox 3 pseudogene 1 pseudo 383-24 chr3 184991456 184991752 + 2.5 NA intron (NM_001009921, intron 41 of 46) intron (NM_001009921, intron 41 of 46) 161456 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 361-11 chr12 53730940 53731165 + 2.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -3600 NR_026554 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 205.5-18 chr4 150316271 150316353 + 2.5 NA intron (NM_001367550, intron 50 of 56) intron (NM_001367550, intron 50 of 56) 237867 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 358-4 chr10 24267153 24267576 + 2.5 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -8321 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 407-19 chr2 171710537 171710699 + 2.5 NA intron (NM_001271787, intron 4 of 15) intron (NM_001271787, intron 4 of 15) 22863 NM_001271787 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 368.5-4 chr1 184398534 184398734 + 2.5 NA intron (NM_030806, intron 1 of 5) Tigger3c|DNA|TcMar-Tigger 11605 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 542.5-10 chr2 23744658 23745069 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 182260 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 526-4 chr16 13264460 13264699 + 2.5 NA Intergenic Intergenic 362981 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 261-15 chr21 44831581 44831763 + 2.5 NA Intergenic L1MEf|LINE|L1 -13543 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 128 chr1 9168691 9168742 + 2.5 NA intron (NR_132742, intron 1 of 1) intron (NR_132742, intron 1 of 1) -13488 NR_132738 102724571 Hs.599298 NR_132738 ENSG00000234546 LNCTAM34A GUARDIN|LINC01759 long non coding transcriptional activator of miR34a ncRNA 630-11 chr16 75360135 75360627 + 2.5 NA intron (NM_006324, intron 5 of 6) L1MC5a|LINE|L1 73122 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 681.5 chr12 111744324 111744640 + 2.5 NA intron (NM_025247, intron 12 of 20) MIRb|SINE|MIR -22451 NM_001204889 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 757-4 chr2 170705299 170705619 + 2.5 NA intron (NR_110185, intron 5 of 5) intron (NR_110185, intron 5 of 5) 9108 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 335-49 chr7 128043426 128043668 + 2.5 NA intron (NM_014390, intron 16 of 23) AluSz|SINE|Alu -12110 NM_022143 64101 Hs.655003 NM_022143 ENSG00000128594 LRRC4 NAG14|NGL-2 leucine rich repeat containing 4 protein-coding 363.5-19 chr22 26042520 26042754 + 2.5 NA Intergenic Intergenic -126825 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 520.5 chr1 18908073 18908580 + 2.5 NA 3' UTR (NM_001136265, exon 9 of 9) 3' UTR (NM_001136265, exon 9 of 9) -5527 NM_001319218 8659 Hs.77448 NM_003748 ENSG00000159423 ALDH4A1 ALDH4|P5CD|P5CDh aldehyde dehydrogenase 4 family member A1 protein-coding 449-19 chr3 110820015 110820222 + 2.5 NA Intergenic L1ME1|LINE|L1 249841 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 672-13 chr5 173514166 173514434 + 2.5 NA Intergenic AluSx|SINE|Alu -65334 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 341-24 chr4 18454816 18455095 + 2.5 NA Intergenic Intergenic -433080 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 599-10 chr20 57191797 57192136 + 2.5 NA intron (NM_001719, intron 3 of 6) L1M4b|LINE|L1 -21730 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 492-25 chr4 49150377 49150932 + 2.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 164012 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 373.5-13 chr2 63965450 63965679 + 2.5 NA intron (NM_001005739, intron 6 of 22) intron (NM_001005739, intron 6 of 22) 53864 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 789.5-4 chr3 40751743 40752223 + 2.5 NA Intergenic Intergenic 227023 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 284.5-3 chr1 53898832 53899036 + 2.5 NA intron (NM_001324316, intron 1 of 1) MIR3|SINE|MIR 4747 NM_001039715 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 479-26 chrX 46810782 46811110 + 2.5 NA Intergenic L1MD2|LINE|L1 -26097 NM_006915 6102 Hs.44766 NM_006915 ENSG00000102218 RP2 DELXp11.3|NM23-H10|NME10|TBCCD2|XRP2 RP2 activator of ARL3 GTPase protein-coding 582 chr1 113373023 113373344 + 2.5 NA Intergenic Intergenic -17332 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 385.5-14 chr14 81732494 81732759 + 2.5 NA Intergenic MIRb|SINE|MIR 10512 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 411.5-8 chr12 58170310 58170623 + 2.5 NA Intergenic Intergenic 82574 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 551-28 chr9 28080410 28080751 + 2.5 NA intron (NM_152570, intron 5 of 6) L2a|LINE|L2 -506714 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 597.5-5 chr3 180252709 180253063 + 2.5 NA Intergenic L1ME1|LINE|L1 -161287 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 830.5 chr3 41667541 41668044 + 2.5 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 294311 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 270-27 chr5 142037881 142038046 + 2.5 NA Intergenic L1MB3|LINE|L1 -24936 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 708-8 chrX 140529773 140530118 + 2.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -24885 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 348-27 chr5 5712865 5713135 + 2.5 NA Intergenic MER52C|LTR|ERV1 290323 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 324.5-8 chr10 96086392 96086524 + 2.5 NA intron (NR_134322, intron 2 of 3) CR1_Mam|LINE|CR1 3777 NR_134322 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 481.5-14 chr5 76959036 76959479 + 2.5 NA intron (NM_001882, intron 5 of 6) intron (NM_001882, intron 5 of 6) 6212 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 459.5-9 chr17 42620168 42620387 + 2.5 NA Intergenic MIRc|SINE|MIR 10594 NM_001070 7283 Hs.279669 NM_001070 ENSG00000131462 TUBG1 CDCBM4|GCP-1|TUBG|TUBGCP1 tubulin gamma 1 protein-coding 188-7 chr14 71962805 71962938 + 2.5 NA intron (NM_001370288, intron 1 of 16) UCON33|DNA|TcMar-Tigger 29344 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 501.5-25 chr7 46502998 46503198 + 2.5 NA Intergenic Intergenic 194024 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 672-5 chr14 61479498 61479952 + 2.5 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 90469 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 476.5-17 chr9 27326946 27327314 + 2.5 NA 3' UTR (NM_024761, exon 4 of 4) 3' UTR (NM_024761, exon 4 of 4) -29980 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 582.5-13 chr9 87611994 87612331 + 2.5 NA intron (NM_004938, intron 3 of 25) MLT1A1|LTR|ERVL-MaLR 58708 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 203-3 chr11 69280924 69281067 + 2.5 NA Intergenic Intergenic -13160 NM_001300923 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 362-4 chr1 240075479 240075689 + 2.5 NA Intergenic L1MB8|LINE|L1 -16299 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 743.5 chr1 206720156 206720619 + 2.5 NA intron (NM_004759, intron 1 of 9) AluSz|SINE|Alu 35482 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 412-4 chr10 57000275 57000503 + 2.5 NA Intergenic MLT2D|LTR|ERVL 304170 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 736-3 chr14 55953386 55953906 + 2.5 NA Intergenic MLT2C1|LTR|ERVL -156972 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 372-18 chr15 60864954 60865128 + 2.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 183472 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 310.5-32 chr3 151428598 151428746 + 2.5 NA intron (NM_053002, intron 41 of 42) intron (NM_053002, intron 41 of 42) 12108 NM_001178146 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 424-5 chr15 69711185 69711540 + 2.5 NA Intergenic Intergenic 119162 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 579.5-20 chr9 75007418 75007881 + 2.5 NA intron (NM_001320497, intron 3 of 7) AluSx1|SINE|Alu 19502 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 352-15 chr2 30542063 30542245 + 2.5 NA intron (NM_182551, intron 4 of 6) L1M4|LINE|L1 94908 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 575-18 chr9 128659072 128659343 + 2.5 NA intron (NR_031672, intron 2 of 2).4 intron (NR_031672, intron 2 of 2).4 -2357 NM_052844 89891 Hs.495240 NM_052844 ENSG00000119333 WDR34 DIC5|FAP133|SRTD11|bA216B9.3 WD repeat domain 34 protein-coding 245-2 chr1 112870775 112870897 + 2.5 NA Intergenic Intergenic -11214 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 415.5-6 chr14 61394850 61395163 + 2.5 NA intron (NM_006255, intron 2 of 13) MamTip2|DNA|hAT-Tip100 73563 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 271-30 chr9 74450825 74450966 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR -46440 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 327.5-4 chr13 63319591 63319765 + 2.5 NA intron (NR_126409, intron 2 of 6) MLT1B|LTR|ERVL-MaLR 8416 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 500.5-18 chrX 85056690 85057160 + 2.5 NA intron (NM_198450, intron 5 of 8) L1ME1|LINE|L1 52043 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 413.5-23 chr7 110343429 110343686 + 2.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -383344 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 644-8 chr8 5335542 5336029 + 2.5 NA Intergenic Intergenic -340871 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 403-41 chr9 36893979 36894140 + 2.5 NA promoter-TSS (NR_039687) promoter-TSS (NR_039687) -528 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 423.5-24 chr5 164157689 164158077 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 309519 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 339-31 chr6 89921914 89922190 + 2.5 NA Intergenic AluSx1|SINE|Alu 27583 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 393-38 chr9 69016913 69017107 + 2.5 NA Intergenic Intergenic -2887 NM_002732 5568 Hs.158029 NM_002732 ENSG00000165059 PRKACG BDPLT19|KAPG|PKACg protein kinase cAMP-activated catalytic subunit gamma protein-coding 470.5-6 chr18 29280852 29281229 + 2.5 NA Intergenic MER21C|LTR|ERVL -1017870 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 805-4 chr6 142988882 142989315 + 2.5 NA intron (NR_038987, intron 2 of 2) MER102c|DNA|hAT-Charlie -43922 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 169-12 chr4 1112342 1112450 + 2.5 NA intron (NM_001366918, intron 1 of 10) intron (NM_001366918, intron 1 of 10) 1168 NR_159499 285498 Hs.248290 NM_194439 ENSG00000178222 RNF212 ZHP3 ring finger protein 212 protein-coding 477.5-20 chr5 97817030 97817296 + 2.5 NA Intergenic L1MA2|LINE|L1 -23595 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 720-4 chr2 207354833 207355327 + 2.5 NA Intergenic Intergenic -85656 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 377-24 chr4 38312895 38313101 + 2.5 NA Intergenic MIRb|SINE|MIR -53916 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 552.5-12 chr3 6659125 6659392 + 2.5 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 146191 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 242.5-15 chr2 228175571 228175690 + 2.5 NA intron (NM_030623, intron 1 of 10) L1MCa|LINE|L1 6015 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 423-36 chr8 4753998 4754340 + 2.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 240745 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 329.5-13 chr22 41732122 41732295 + 2.5 NA intron (NM_152513, intron 9 of 30) intron (NM_152513, intron 9 of 30) 32705 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 359.5-37 chr8 13617399 13617589 + 2.5 NA Intergenic Intergenic -12196 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 728.5-3 chr14 78838403 78838808 + 2.5 NA intron (NM_004796, intron 7 of 16) MIRb|SINE|MIR -361377 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 608.5-6 chr7 42248954 42249456 + 2.5 NA Intergenic MER58B|DNA|hAT-Charlie -11996 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 214-3 chr1 200787453 200787578 + 2.5 NA intron (NM_001297707, intron 2 of 17) Tigger1|DNA|TcMar-Tigger 47943 NM_203459 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 167.5-20 chr5 95009932 95010044 + 2.5 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 71878 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 343-30 chr8 63578946 63579258 + 2.5 NA Intergenic Intergenic 113253 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 661.5-9 chr5 121780288 121780757 + 2.5 NA Intergenic Intergenic -71360 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 717.5-9 chr8 92182600 92182938 + 2.5 NA Intergenic Intergenic -79384 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 596.5-2 chr10 110029494 110029912 + 2.5 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -21322 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 578-14 chr20 44612486 44612851 + 2.5 NA intron (NM_001281444, intron 4 of 5) intron (NM_001281444, intron 4 of 5) 30089 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 335.5-3 chr10 14293969 14294167 + 2.5 NA intron (NR_134578, intron 2 of 3) L1ME3B|LINE|L1 36816 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 348.5-28 chr8 110138680 110138855 + 2.5 NA Intergenic Intergenic -162996 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 168-9 chr2 54529151 54529272 + 2.5 NA promoter-TSS (NR_002229) promoter-TSS (NR_002229) -11 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 259.5-11 chr17 9868824 9869076 + 2.5 NA intron (NM_004246, intron 9 of 12) intron (NM_004246, intron 9 of 12) 36321 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 629.5-4 chr12 26814277 26814767 + 2.5 NA intron (NM_002223, intron 1 of 56) L3b|LINE|CR1 18672 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 427-21 chr4 30553219 30553392 + 2.5 NA Intergenic LTR80A|LTR|ERVL -167064 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 680.5-4 chr6 72715063 72715461 + 2.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 84767 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 649-14 chr9 83338987 83339280 + 2.5 NA intron (NM_001244960, intron 5 of 13) intron (NM_001244960, intron 5 of 13) -7172 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 435.5-16 chr6 47970474 47970667 + 2.5 NA intron (NM_207499, intron 2 of 2) HAL1|LINE|L1 98119 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 293.5 chr1 47840726 47841002 + 2.5 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 156521 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 673.5 chr1 64524382 64524831 + 2.5 NA intron (NM_001293274, intron 1 of 25) intron (NM_001293274, intron 1 of 25) 18692 NM_001293274 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 272.5-25 chr3 18921795 18921982 + 2.5 NA Intergenic Intergenic -226622 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 573.5-8 chr5 97161976 97162438 + 2.5 NA 3' UTR (NM_018343, exon 10 of 10) 3' UTR (NM_018343, exon 10 of 10) -19596 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 515-13 chr22 26822300 26822521 + 2.5 NA Intergenic Intergenic -37801 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 547-11 chr2 178751368 178751647 + 2.5 NA exon (NM_133379, exon 46 of 46) exon (NM_133379, exon 46 of 46) -25419 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 597.5-7 chr6 145693333 145693694 + 2.5 NA intron (NM_001360064, intron 1 of 3) L1PB4|LINE|L1 -6636 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 372.5-12 chr2 68187220 68187431 + 2.5 NA intron (NM_000945, intron 3 of 5) intron (NM_000945, intron 3 of 5) 29437 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 376.5-24 chr6 2846623 2846808 + 2.5 NA Intergenic L2b|LINE|L2 -4852 NR_073112 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 272-7 chr12 1163933 1164117 + 2.5 NA intron (NR_027948, intron 7 of 19) MLT1G3|LTR|ERVL-MaLR 136277 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 421-10 chr13 77167386 77167715 + 2.5 NA intron (NM_015057, intron 40 of 82) L1MC5a|LINE|L1 92036 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 484.5-23 chr6 159692952 159693306 + 2.5 NA intron (NM_001322817, intron 3 of 7) CpG 112 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 239-27 chr8 49427669 49427787 + 2.5 NA Intergenic HERV9-int|LTR|ERV1 84452 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 319-30 chr3 169600591 169600834 + 2.5 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 63000 NM_001366473 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 463-14 chr19 27690700 27690925 + 2.5 NA Intergenic HSAT4|Satellite|centr -102619 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 285.5-36 chr9 99527384 99527566 + 2.5 NA Intergenic L1MEg|LINE|L1 -152218 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 278.5-5 chr14 56033786 56033966 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -84535 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 679-7 chr17 17339901 17340258 + 2.5 NA intron (NM_020201, intron 3 of 4) L1MA3|LINE|L1 36706 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 679.5 chr1 41973007 41973482 + 2.5 NA intron (NR_038261, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR -54322 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 311-23 chr3 184379602 184379800 + 2.5 NA promoter-TSS (NM_001290022) promoter-TSS (NM_001290022) -13 NM_001290026 7066 Hs.1166 NM_000460 ENSG00000090534 THPO MGDF|MKCSF|ML|MPLLG|THCYT1|TPO thrombopoietin protein-coding 223.5-7 chr11 79309598 79309711 + 2.5 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 92455 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 474.5-9 chr5 16627354 16627694 + 2.5 NA intron (NR_109946, intron 3 of 3) intron (NR_109946, intron 3 of 3) -10466 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 324-9 chr12 59665276 59665423 + 2.5 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -24021 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 507-28 chr5 111270293 111270664 + 2.5 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 46094 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 470.5-3 chr11 39304739 39305043 + 2.5 NA Intergenic LFSINE_Vert|SINE|tRNA 656033 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 600.5-8 chr8 89478058 89478345 + 2.5 NA Intergenic Intergenic 279510 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 494-19 chr7 13567729 13568212 + 2.5 NA Intergenic L1MEd|LINE|L1 418544 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 239-25 chr5 61976781 61976932 + 2.5 NA Intergenic Intergenic -241158 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 578.5-13 chr6 123814799 123815266 + 2.5 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 11167 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 529-19 chr6 164295805 164296217 + 2.5 NA Intergenic Intergenic 526052 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 446-35 chr8 46390116 46390406 + 2.5 NA Intergenic GSAT|Satellite|centr 227382 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 547-13 chr3 170742823 170743250 + 2.5 NA intron (NR_135556, intron 5 of 5) L1MEc|LINE|L1 127159 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 200-18 chr6 90830286 90830408 + 2.5 NA Intergenic Intergenic -243275 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 233.5-17 chr20 38397657 38397804 + 2.5 NA Intergenic L1MC4a|LINE|L1 27600 NR_002910 26776 Hs.400876 NR_002910 ENSG00000235408 SNORA71B RNU71B|U71b small nucleolar RNA, H/ACA box 71B snoRNA 631.5-3 chr16 54466361 54466670 + 2.5 NA Intergenic MIR|SINE|MIR -95816 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 542-24 chr8 124121382 124121708 + 2.5 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 49977 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 750-5 chr13 89422006 89422323 + 2.5 NA Intergenic Intergenic 78345 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 208-22 chrX 76422664 76422768 + 2.5 NA Intergenic MER89|LTR|ERV1 -4994 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 274-6 chr10 129413312 129413523 + 2.5 NA Intergenic Intergenic -53824 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 486-40 chr8 125771445 125771843 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 179553 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 217-18 chr3 94068141 94068258 + 2.5 NA intron (NM_022072, intron 2 of 5) MIR|SINE|MIR 5138 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 256.5-26 chr5 23452036 23452154 + 2.5 NA Intergenic L1MB5|LINE|L1 -55514 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 344-11 chr14 59370825 59370982 + 2.5 NA 3' UTR (NM_014992, exon 25 of 25) 3' UTR (NM_014992, exon 25 of 25) 94477 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 385-19 chr21 36607682 36607916 + 2.5 NA Intergenic Intergenic -31230 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 540-12 chr15 79958346 79958652 + 2.5 NA Intergenic AluSq2|SINE|Alu 12697 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 498.5-12 chr4 37720792 37721219 + 2.5 NA Intergenic L1ME3|LINE|L1 -34629 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 289.5-27 chr22 19090538 19090723 + 2.5 NA intron (NM_001184781, intron 1 of 9) L1ME1|LINE|L1 31782 NM_005137 9993 Hs.517357 NM_005137 ENSG00000070413 DGCR2 DGS-C|IDD|LAN|SEZ-12 DiGeorge syndrome critical region gene 2 protein-coding 496.5-6 chr17 56851182 56851679 + 2.5 NA intron (NM_003647, intron 7 of 11) HAL1|LINE|L1 17279 NM_003647 8526 Hs.239514 NM_003647 ENSG00000153933 DGKE AHUS7|DAGK5|DAGK6|DGK|NPHS7 diacylglycerol kinase epsilon protein-coding 515.5-7 chr2 225482332 225482594 + 2.5 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 81577 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 464.5-19 chr7 52677305 52677501 + 2.5 NA Intergenic FLAM_A|SINE|Alu -358230 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 544.5-3 chr12 62792075 62792419 + 2.5 NA intron (NM_020700, intron 3 of 9) intron (NM_020700, intron 3 of 9) 142903 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 633.5-8 chr3 117175908 117176229 + 2.5 NA Intergenic Intergenic 254637 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 241.5-7 chr11 64610630 64610848 + 2.5 NA intron (NM_015080, intron 22 of 22) intron (NM_015080, intron 22 of 22) 19519 NM_153378 116085 Hs.174424 NM_144585 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 member 12 protein-coding 308.5-29 chr6 48895010 48895170 + 2.5 NA Intergenic Intergenic 568163 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 260-13 chr17 27610623 27610735 + 2.5 NA intron (NM_014238, intron 18 of 20) MER33|DNA|hAT-Charlie -20509 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 364.5-13 chr2 18719042 18719229 + 2.5 NA Intergenic Intergenic -129555 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 339.5-31 chr7 96245536 96245821 + 2.5 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -25922 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 499-9 chr2 167192209 167192497 + 2.5 NA intron (NM_001199144, intron 1 of 8) intron (NM_001199144, intron 1 of 8) 4981 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 467-10 chr14 49942555 49942776 + 2.5 NA Intergenic Intergenic -23734 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 549.5-3 chr14 47101564 47101976 + 2.5 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 241476 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 685.5-9 chr9 25641293 25641610 + 2.5 NA Intergenic Intergenic 37407 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 446.5-20 chr5 161867660 161868039 + 2.5 NA intron (NM_000806, intron 5 of 10) intron (NM_000806, intron 5 of 10) 17124 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 486-16 chr15 75917884 75918299 + 2.5 NA intron (NM_012170, intron 5 of 5) intron (NM_012170, intron 5 of 5) 14213 NR_037623 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 312.5-12 chr18 195435 195625 + 2.5 NA intron (NM_001037334, intron 5 of 14) intron (NM_001037334, intron 5 of 14) 36973 NM_001037334 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 526.5-17 chr6 101832023 101832403 + 2.5 NA intron (NM_001166247, intron 9 of 16) intron (NM_001166247, intron 9 of 16) 433228 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 236-16 chr2 38864311 38864421 + 2.5 NA intron (NM_001329963, intron 2 of 23) FLAM_C|SINE|Alu 11568 NM_198963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 499-16 chr5 27469360 27469741 + 2.5 NA Intergenic Intergenic -2742 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 353.5-4 chr10 67321135 67321336 + 2.5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 82175 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 523-10 chr14 55059821 55060124 + 2.5 NA intron (NM_144578, intron 1 of 3) intron (NM_144578, intron 1 of 3) 8325 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 479.5-14 chr6 136968668 136968947 + 2.5 NA Intergenic AluJb|SINE|Alu 24424 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 344-35 chr9 21938903 21939044 + 2.5 NA Intergenic THE1A|LTR|ERVL-MaLR -28166 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 311.5-31 chr3 48649192 48649351 + 2.5 NA intron (NM_001407, intron 16 of 34) intron (NM_001407, intron 16 of 34) -4991 NR_039956 100616112 NR_039956 ENSG00000284575 MIR4793 - microRNA 4793 ncRNA 313.5-11 chr14 47843766 47843988 + 2.5 NA Intergenic L1PA16|LINE|L1 -48863 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 311-30 chr7 110906219 110906372 + 2.5 NA intron (NM_032549, intron 4 of 5) Tigger13a|DNA|TcMar-Tigger -184711 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 495.5-10 chr2 121806255 121806487 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 50720 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 332-14 chr2 16246891 16247115 + 2.5 NA Intergenic Intergenic 196576 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 235-31 chr6 36895897 36896077 + 2.5 NA intron (NM_001286635, intron 2 of 8) L1MB7|LINE|L1 10035 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 355-26 chr3 33643011 33643292 + 2.5 NA intron (NM_015097, intron 8 of 38) intron (NM_015097, intron 8 of 38) 16528 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 612 chr1 104740831 104741182 + 2.5 NA Intergenic Intergenic 667983 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 367.5-15 chr18 2410250 2410660 + 2.5 NA Intergenic Intergenic 161050 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 675.5-2 chr1 112599457 112599823 + 2.5 NA intron (NM_001308264, intron 3 of 13) intron (NM_001308264, intron 3 of 13) 19501 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 252-29 chr8 90294443 90294650 + 2.5 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 73058 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 709.5-5 chr3 33643395 33643844 + 2.5 NA intron (NM_015097, intron 8 of 38) (TA)n|Simple_repeat|Simple_repeat 16060 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 329.5-19 chr6 132558989 132559171 + 2.5 NA Intergenic Intergenic 6396 NM_053278 83551 Hs.350571 NM_053278 ENSG00000146385 TAAR8 GPR102|TA5|TAR5|TRAR5|TaR-5|TaR-8 trace amine associated receptor 8 protein-coding 446.5-8 chr2 30701705 30702071 + 2.5 NA Intergenic L1ME1|LINE|L1 105558 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 549.5-4 chr14 72633091 72633406 + 2.5 NA intron (NM_001280542, intron 8 of 10) L2b|LINE|L2 116428 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 236.5-33 chr6 49434022 49434186 + 2.5 NA intron (NM_000255, intron 12 of 12) intron (NM_000255, intron 12 of 12) 29149 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 540-13 chr2 40572697 40573029 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -60428 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 339.5 chr1 35737177 35737377 + 2.5 NA intron (NM_001190481, intron 22 of 23) intron (NM_001190481, intron 22 of 23) -18393 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 362-32 chr8 109382628 109382875 + 2.5 NA intron (NM_177531, intron 4 of 77) intron (NM_177531, intron 4 of 77) 20290 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 441.5-10 chr16 22970772 22970962 + 2.5 NA Intergenic Intergenic 156705 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 246.5-40 chr8 134329430 134329569 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -268572 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 398.5-10 chr2 37557078 37557284 + 2.5 NA Intergenic LTR78|LTR|ERV1 115018 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 538-10 chr2 138263822 138264339 + 2.5 NA Intergenic Intergenic 162196 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 794.5-5 chr7 140998409 140998973 + 2.5 NA Intergenic Intergenic 15988 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 507.5-5 chr10 84454128 84454376 + 2.5 NA intron (NM_018999, intron 6 of 10) MLT1C|LTR|ERVL-MaLR 29083 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 490.5-22 chr9 132358841 132359249 + 2.5 NA Intergenic Intergenic -4059 NM_015046 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 426.5-16 chr2 182450332 182450595 + 2.5 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -23415 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 399.5-29 chr9 109712098 109712429 + 2.5 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -67935 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 409.5-12 chr2 132914710 132914984 + 2.5 NA promoter-TSS (NR_135572) promoter-TSS (NR_135572) -710 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 602.5-4 chr12 95476514 95476873 + 2.5 NA intron (NM_001317183, intron 2 of 9) intron (NM_001317183, intron 2 of 9) 2541 NM_006838 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 656-11 chr7 92665835 92666251 + 2.5 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -75653 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 518.5-13 chr2 139786140 139786371 + 2.5 NA Intergenic Intergenic 800430 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 531-15 chr19 32841198 32841439 + 2.5 NA intron (NM_001126335, intron 11 of 12) intron (NM_001126335, intron 11 of 12) 28449 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 274-5 chr10 114334110 114334298 + 2.5 NA intron (NM_001001936, intron 2 of 18) intron (NM_001001936, intron 2 of 18) 70298 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 572-6 chr2 47988058 47988411 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -82441 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 594-16 chr7 85748464 85748896 + 2.5 NA Intergenic L1PBb|LINE|L1 327558 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 454-6 chr13 48224168 48224502 + 2.5 NA Intergenic AluSx4|SINE|Alu -8871 NM_021999 9445 Hs.643683 NM_021999 ENSG00000136156 ITM2B ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2 integral membrane protein 2B protein-coding 425.5-6 chr11 40331898 40332245 + 2.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -38941 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 564.5-6 chr18 60360902 60361352 + 2.5 NA Intergenic Intergenic 11648 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 528.5-4 chr12 13111926 13112336 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -8464 NM_001080554 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 470-20 chr2 164879938 164880175 + 2.5 NA Intergenic Intergenic -37980 NM_001278460 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 476.5-15 chr7 43048495 43048862 + 2.5 NA Intergenic L1MA3|LINE|L1 -63969 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 283-33 chr4 68127453 68127736 + 2.5 NA intron (NM_207407, intron 1 of 9) L3b|LINE|CR1 2275 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 381.5-7 chr18 1498288 1498607 + 2.5 NA Intergenic MLT2C2|LTR|ERVL -138818 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 405.5-22 chr7 28671621 28671824 + 2.5 NA intron (NM_182899, intron 4 of 9) MIR|SINE|MIR -14411 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 332.5-20 chr7 28360893 28361155 + 2.5 NA intron (NM_182899, intron 1 of 9) MER20|DNA|hAT-Charlie -51494 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 501.5-21 chr4 87635687 87635992 + 2.5 NA Intergenic L1MC5|LINE|L1 -14441 NM_004407 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 320-13 chr2 35980577 35980746 + 2.5 NA Intergenic Intergenic 374909 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 477-10 chr2 73854936 73855171 + 2.5 NA intron (NR_148670, intron 8 of 12) intron (NR_148670, intron 8 of 12) 26086 NM_006463 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 212-14 chr2 196425462 196425562 + 2.5 NA intron (NM_020760, intron 2 of 28) Tigger1|DNA|TcMar-Tigger -63335 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 388.5-18 chr4 99037276 99037506 + 2.5 NA intron (NM_015143, intron 4 of 10) L1ME4b|LINE|L1 40004 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 282-17 chr2 151881672 151881874 + 2.5 NA intron (NM_000726, intron 3 of 13) intron (NM_000726, intron 3 of 13) -53352 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 359.5-3 chr1 110404346 110404503 + 2.5 NA intron (NM_006402, intron 2 of 3) intron (NM_006402, intron 2 of 3) -3385 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 616-12 chr9 88261084 88261387 + 2.5 NA Intergenic Intergenic -122754 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 552.5-8 chr17 14972642 14973077 + 2.5 NA Intergenic Intergenic -41946 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 343-17 chr22 24087012 24087204 + 2.5 NA intron (NM_012295, intron 22 of 36) intron (NM_012295, intron 22 of 36) 75738 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 357-36 chr6 26183414 26183609 + 2.5 NA promoter-TSS (NM_003523) promoter-TSS (NM_003523) -285 NM_003523 8344 Hs.534369 NM_003523 ENSG00000274290 HIST1H2BE H2B.h|H2B/h|H2BFH|dJ221C16.8 histone cluster 1 H2B family member e protein-coding 210-18 chr3 58577846 58578087 + 2.5 NA promoter-TSS (NM_001076778) promoter-TSS (NM_001076778) -575 NM_001076778 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 263-25 chr8 87374116 87374333 + 2.5 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 499791 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 357.5-7 chr15 86936068 86936293 + 2.5 NA intron (NR_135682, intron 2 of 2) intron (NR_135682, intron 2 of 2) 3300 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 571-4 chr14 50198406 50198773 + 2.5 NA intron (NM_006939, intron 4 of 22) MER5B|DNA|hAT-Charlie 32989 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 732-13 chr5 4227163 4227747 + 2.5 NA Intergenic Intergenic -546026 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 558.5-3 chr10 28351574 28351932 + 2.5 NA Intergenic MER110|LTR|ERV1 -48689 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 374.5-14 chr19 28803361 28803547 + 2.5 NA Intergenic L1PA16|LINE|L1 -75760 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 428-9 chr14 44528159 44528343 + 2.5 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 20842 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 392.5 chr1 65162721 65162890 + 2.5 NA intron (NM_001330616, intron 1 of 4) L1MB7|LINE|L1 13811 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 252-5 chr11 129023902 129024095 + 2.5 NA 5' UTR (NM_014715, exon 1 of 13) 5' UTR (NM_014715, exon 1 of 13) 190 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 168.5-20 chr3 172410176 172410332 + 2.5 NA Intergenic L1MB7|LINE|L1 38202 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 365-34 chr8 84149184 84149353 + 2.5 NA Intergenic L1MA8|LINE|L1 -33519 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 494.5-5 chr19 49085816 49086148 + 2.5 NA intron (NM_001301069, intron 1 of 9) intron (NM_001301069, intron 1 of 9) 531 NM_003089 6625 Hs.467097 NM_003089 ENSG00000104852 SNRNP70 RNPU1Z|RPU1|SNRP70|Snp1|U1-70K|U170K|U1AP|U1RNP small nuclear ribonucleoprotein U1 subunit 70 protein-coding 256.5-5 chr11 114563131 114563399 + 2.5 NA Intergenic Intergenic -3384 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 443-23 chr21 18394699 18394944 + 2.5 NA intron (NM_002772, intron 3 of 24) intron (NM_002772, intron 3 of 24) 8964 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 477.5-25 chr8 112401862 112402204 + 2.5 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -241460 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 432.5-5 chr12 132991305 132991518 + 2.5 NA intron (NM_001330514, intron 2 of 4) AluSg|SINE|Alu 5044 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 285.5-35 chr8 136255845 136256026 + 2.5 NA Intergenic Intergenic -274863 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 217.5-24 chr22 28931286 28931441 + 2.5 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 13974 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 358-2 chr1 237922216 237922413 + 2.5 NA intron (NR_027247, intron 11 of 11) intron (NR_027247, intron 11 of 11) -31392 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 436-30 chr7 4777589 4777959 + 2.5 NA intron (NR_157345, intron 1 of 16) intron (NR_157345, intron 1 of 16) 2151 NR_157345 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 224.5-8 chr14 25835323 25835491 + 2.5 NA Intergenic Intergenic 718023 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 296-27 chr5 57736758 57736969 + 2.5 NA Intergenic Intergenic 86203 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 389-10 chr14 73327005 73327189 + 2.5 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) -81096 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 438-20 chr20 2493110 2493362 + 2.5 NA intron (NM_001282498, intron 2 of 3) intron (NM_001282498, intron 2 of 3) 15679 NM_001282496 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 295-30 chr3 46993989 46994136 + 2.5 NA intron (NM_001365116, intron 10 of 52) intron (NM_001365116, intron 10 of 52) 6072 NM_001365116 23218 Hs.437043 NM_015175 ENSG00000160796 NBEAL2 BDPLT4|GPS neurobeachin like 2 protein-coding 353-37 chr7 104089131 104089311 + 2.5 NA Intergenic Intergenic -99563 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 355-35 chr6 85628677 85628835 + 2.5 NA intron (NM_001159676, intron 5 of 10) intron (NM_001159676, intron 5 of 10) 12695 NM_001159675 10492 Hs.571177 NM_006372 ENSG00000135316 SYNCRIP GRY-RBP|GRYRBP|HNRNPQ|HNRPQ1|NSAP1|PP68|hnRNP-Q synaptotagmin binding cytoplasmic RNA interacting protein protein-coding 300-26 chr6 90539731 90539923 + 2.5 NA intron (NM_145333, intron 11 of 14) intron (NM_145333, intron 11 of 14) 47245 NM_003188 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 642-11 chr4 83358588 83359064 + 2.5 NA Intergenic MamRep1151|LTR?|LTR? -23673 NM_006665 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 252-27 chr7 43007293 43007478 + 2.5 NA Intergenic Intergenic 75009 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 241.5-4 chr10 12755919 12756047 + 2.5 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -30630 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 372.5-8 chr2 16195173 16195373 + 2.5 NA Intergenic Intergenic 144846 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 354.5-20 chr2 174855611 174855761 + 2.5 NA intron (NR_038133, intron 5 of 11) MIRb|SINE|MIR -8068 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 307.5-24 chr3 96415976 96416153 + 2.5 NA Intergenic L1PA15|LINE|L1 56100 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 694.5 chr2 186819656 186820040 + 2.5 NA Intergenic Intergenic 29322 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 239-7 chr12 59708227 59708363 + 2.5 NA intron (NM_001270623, intron 3 of 5) MER5A|DNA|hAT-Charlie 18925 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 489.5-7 chr14 38086771 38087137 + 2.5 NA Intergenic Intergenic -120950 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 368-9 chr13 60447129 60447295 + 2.5 NA intron (NM_030794, intron 3 of 13) intron (NM_030794, intron 3 of 13) 49992 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 259-11 chr18 5310839 5310960 + 2.5 NA Intergenic Intergenic -13846 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 392.5-3 chr10 64768133 64768321 + 2.5 NA Intergenic MamRep1151|LTR?|LTR? -57301 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 326.5-21 chr2 165758459 165758871 + 2.5 NA intron (NM_004482, intron 6 of 10) intron (NM_004482, intron 6 of 10) 35582 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 257.5-41 chr7 16845074 16845206 + 2.5 NA Intergenic L2b|LINE|L2 36843 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 832.5-4 chr4 181111138 181111756 + 2.5 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 47702 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 409.5-9 chr17 47826252 47826528 + 2.5 NA intron (NM_145255, intron 4 of 4) intron (NM_145255, intron 4 of 4) -4596 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 374-8 chr12 6473226 6473463 + 2.5 NA Intergenic AluJb|SINE|Alu -2667 NM_199245 6843 Hs.20021 NM_014231 ENSG00000139190 VAMP1 CMS25|SPAX1|SYB1|VAMP-1 vesicle associated membrane protein 1 protein-coding 486.5-14 chr6 133662072 133662328 + 2.5 NA intron (NR_109982, intron 4 of 8) THE1B|LTR|ERVL-MaLR -158947 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 369-15 chr12 13704259 13704530 + 2.5 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 275962 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 415-8 chr10 127668028 127668203 + 2.5 NA Intergenic L1MC4|LINE|L1 -69070 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 366.5-28 chr7 3207290 3207444 + 2.5 NA Intergenic MER102b|DNA|hAT-Charlie -48794 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 438-6 chr10 65923044 65923503 + 2.5 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 351848 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 472.5-4 chr12 30647801 30648097 + 2.5 NA intron (NM_006390, intron 20 of 24) L1MB8|LINE|L1 29295 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 915.5-4 chrX 50742687 50743203 + 2.5 NA intron (NR_027121, intron 1 of 9) L1MC3|LINE|L1 71099 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 302.5-42 chr9 26397541 26397671 + 2.5 NA Intergenic Intergenic 330931 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 520.5-10 chr20 38558608 38558926 + 2.5 NA intron (NM_001282917, intron 23 of 29) LTR56|LTR|ERV1 -22430 NR_130907 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 546.5-6 chr3 1002621 1002904 + 2.5 NA Intergenic L1MEf|LINE|L1 -90262 NM_001349354 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 393-14 chr2 17228311 17228480 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 290045 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 720.5-6 chr20 24393083 24393433 + 2.5 NA Intergenic Intergenic -75941 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 1056-4 chr8 88882546 88883195 + 2.5 NA Intergenic L2a|LINE|L2 -555387 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 562-11 chr8 75808869 75809141 + 2.5 NA Intergenic Intergenic 269037 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 584-17 chr5 152216171 152216909 + 2.5 NA intron (NR_109876, intron 1 of 2) L1MA8|LINE|L1 188739 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 520-4 chr11 32394382 32394671 + 2.5 NA intron (NR_160306, intron 7 of 9) intron (NR_160306, intron 7 of 9) 5874 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 573.5-7 chr4 128790682 128791044 + 2.5 NA Intergenic AluSx|SINE|Alu -18837 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 504.5-9 chr6 150102933 150103225 + 2.5 NA Intergenic L1MA8|LINE|L1 -33958 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 360.5-16 chr3 103842857 103843084 + 2.5 NA Intergenic L1M4|LINE|L1 -318854 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 290-11 chr17 62651881 62652038 + 2.5 NA intron (NM_006039, intron 1 of 29) intron (NM_006039, intron 1 of 29) 24289 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 258.5-3 chr11 119391133 119391307 + 2.5 NA intron (NR_034160, intron 1 of 3) MER57F|LTR|ERV1 9442 NR_034160 100499227 Hs.662365 NR_034160 USP2-AS1 THY1-AS1 USP2 antisense RNA 1 (head to head) ncRNA 524-18 chr5 15379249 15379510 + 2.5 NA Intergenic L1PB1|LINE|L1 -112819 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 342.5-17 chr2 65065745 65065893 + 2.5 NA intron (NR_134966, intron 1 of 5) AluSz|SINE|Alu 9403 NM_015147 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 275-3 chr1 48265695 48265878 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie 43070 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 434-20 chr5 138225634 138225989 + 2.5 NA Intergenic LTR8B|LTR|ERV1 -12488 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 306.5-7 chr10 12538324 12538564 + 2.5 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) -40309 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 401.5-3 chr1 95151818 95152121 + 2.5 NA intron (NM_152487, intron 5 of 6) intron (NM_152487, intron 5 of 6) 34046 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 557 chr10 51157746 51158150 + 2.5 NA intron (NM_001098512, intron 2 of 17) L1MA5A|LINE|L1 83461 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 629.5-6 chr4 35929064 35929743 + 2.5 NA Intergenic Intergenic 314536 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 477-6 chr15 99633454 99633724 + 2.5 NA intron (NM_001365209, intron 3 of 10) intron (NM_001365209, intron 3 of 10) 611 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 426-41 chr8 86152422 86152630 + 2.5 NA intron (NM_152565, intron 7 of 7) L1PA7|LINE|L1 53616 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 839-5 chr3 107543207 107543685 + 2.5 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 20484 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 693.5-2 chr10 82706232 82706676 + 2.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -473534 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 196-12 chr5 56569992 56570089 + 2.5 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 36216 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 526.5-16 chr5 131643546 131643891 + 2.5 NA 3' UTR (NM_001008738, exon 17 of 17) 3' UTR (NM_001008738, exon 17 of 17) -8489 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 565.5-13 chr4 77321401 77321697 + 2.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 164342 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 280-4 chr10 16113490 16113661 + 2.5 NA Intergenic Intergenic -253042 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 272.5-39 chr9 27790020 27790142 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR -216215 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 588-15 chr17 80658457 80658846 + 2.5 NA intron (NM_020761, intron 3 of 33) L1MEg|LINE|L1 113813 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 437.5-11 chr7 2913389 2913636 + 2.5 NA intron (NM_001324281, intron 22 of 25) intron (NM_001324281, intron 22 of 25) -69204 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 462-38 chr8 69589017 69589201 + 2.5 NA exon (NM_001128204, exon 7 of 22) exon (NM_001128204, exon 7 of 22) -3791 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 455-19 chr2 234724964 234725175 + 2.5 NA Intergenic MER4E|LTR|ERV1 42401 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 740.5-10 chr7 50133589 50133981 + 2.5 NA intron (NM_001161834, intron 3 of 8) MLT1E1A|LTR|ERVL-MaLR 37699 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 197.5-12 chr14 44714620 44714746 + 2.5 NA Intergenic Intergenic 84443 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 535-11 chr17 62804298 62804538 + 2.5 NA intron (NM_001288779, intron 1 of 11) L2b|LINE|L2 2222 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 330.5-16 chr17 65889431 65889592 + 2.5 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -62968 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 349.5-29 chr7 105044619 105044850 + 2.5 NA intron (NM_182931, intron 3 of 26) intron (NM_182931, intron 3 of 26) 30529 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 466.5-19 chr5 63242445 63242726 + 2.5 NA Intergenic Intergenic 663766 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 945 chr10 51061606 51062318 + 2.5 NA TTS (NR_120678) TTS (NR_120678) 6590 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 487-37 chr8 138102066 138102353 + 2.5 NA Intergenic L2b|LINE|L2 -18664 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 325-20 chr5 41674998 41675187 + 2.5 NA Intergenic Intergenic -164491 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 558-8 chr19 743837 744278 + 2.5 NA intron (NM_002579, intron 8 of 8) L1MD|LINE|L1 -7055 NM_173481 126353 Hs.439180 NM_173481 ENSG00000099812 MISP C19orf21|MISP1 mitotic spindle positioning protein-coding 327-6 chr10 77316448 77316621 + 2.5 NA intron (NM_001322838, intron 1 of 29) MER5A|DNA|hAT-Charlie 34227 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 421.5-10 chr14 44625093 44625291 + 2.5 NA Intergenic Intergenic 117783 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 407-21 chr20 38679350 38679584 + 2.5 NA Intergenic Intergenic -45019 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 371.5-3 chr1 115864066 115864349 + 2.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -23081 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 470.5-4 chr13 73746239 73746453 + 2.5 NA intron (NM_007249, intron 6 of 7) intron (NM_007249, intron 6 of 7) 182102 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 627-4 chr15 47373643 47373920 + 2.5 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 189692 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 587.5-22 chr9 129839228 129839542 + 2.5 NA intron (NM_001008563, intron 1 of 25) intron (NM_001008563, intron 1 of 25) 3927 NM_001110303 10868 Hs.5452 NM_006676 ENSG00000136878 USP20 LSFR3A|VDU2|hVDU2 ubiquitin specific peptidase 20 protein-coding 364-15 chr15 61855116 61855331 + 2.5 NA intron (NM_020821, intron 83 of 84) intron (NM_020821, intron 83 of 84) 125305 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 442.5-20 chr5 98391029 98391355 + 2.5 NA Intergenic Intergenic -229953 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 455-7 chr12 10626146 10626397 + 2.5 NA intron (NM_018423, intron 7 of 10) intron (NM_018423, intron 7 of 10) -12662 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 680-3 chr3 1426022 1426503 + 2.5 NA Intergenic Intergenic 333238 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 972.5-2 chr9 89832396 89833056 + 2.5 NA Intergenic L1PB3|LINE|L1 -136690 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 254-12 chr17 80624252 80624420 + 2.5 NA intron (NM_020761, intron 1 of 33) L1M5|LINE|L1 79498 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 596-9 chr3 33304614 33304955 + 2.5 NA intron (NR_146129, intron 4 of 15) L1ME3F|LINE|L1 27342 NR_146130 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 338.5-19 chr2 165911292 165911487 + 2.5 NA exon (NM_024753, exon 18 of 29) exon (NM_024753, exon 18 of 29) -22468 NR_038984 100506134 Hs.672319 NR_038983 TTC21B-AS1 - TTC21B antisense RNA 1 ncRNA 358.5-12 chr2 58902058 58902300 + 2.5 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -315529 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 509.5-8 chr2 20577709 20578118 + 2.5 NA Intergenic Intergenic 14635 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 665.5-6 chr8 119015195 119015564 + 2.5 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -51868 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 480-32 chr8 53223583 53223802 + 2.5 NA Intergenic (TAATTT)n|Simple_repeat|Simple_repeat 27945 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 385.5-33 chr3 88450072 88450334 + 2.5 NA intron (NM_001368168, intron 2 of 2) L1MA9|LINE|L1 111747 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 356-11 chr13 92230139 92230335 + 2.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 121970 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 288-20 chr2 140512404 140512634 + 2.5 NA intron (NM_018557, intron 51 of 90) MIR3|SINE|MIR 74166 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 410.5-22 chr7 123219625 123219918 + 2.5 NA Intergenic L1MA9|LINE|L1 -19800 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 317.5-20 chr2 212497454 212497666 + 2.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 41068 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 420.5-11 chr2 114062120 114062407 + 2.5 NA Intergenic Intergenic -82279 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 563.5-9 chr9 120240416 120240716 + 2.5 NA Intergenic Intergenic 4484 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 391.5-36 chr8 6910211 6910397 + 2.5 NA Intergenic Intergenic 15772 NM_001926 1671 Hs.711 NM_001926 ENSG00000164822 DEFA6 DEF6|HD-6 defensin alpha 6 protein-coding 224-6 chr12 40896788 40896928 + 2.5 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -11499 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 457.5-8 chr12 116858869 116859159 + 2.5 NA non-coding (NR_073189, exon 5 of 5) non-coding (NR_073189, exon 5 of 5) 22427 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 369-2 chr1 168413093 168413338 + 2.5 NA intron (NR_037851, intron 2 of 3) intron (NR_037851, intron 2 of 3) 9441 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 265.5-21 chr2 219848879 219848986 + 2.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 55957 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 317.5-40 chr8 133358309 133358467 + 2.5 NA Intergenic Intergenic -61084 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 250.5-23 chr20 14054980 14055167 + 2.5 NA intron (NM_001351663, intron 2 of 17) intron (NM_001351663, intron 2 of 17) 59557 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 190-4 chr18 6061144 6061250 + 2.5 NA intron (NM_173464, intron 16 of 19) L1MC2|LINE|L1 -165243 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 303-13 chr15 56105933 56106143 + 2.5 NA intron (NM_001370561, intron 7 of 11) LTR56|LTR|ERV1 83894 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 578-13 chr2 60957471 60957943 + 2.5 NA intron (NM_144709, intron 11 of 17) HERVL18-int|LTR|ERVL 59505 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 753-2 chr11 84749593 84750030 + 2.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -28869 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 480.5-5 chr2 40687795 40688137 + 2.5 NA Intergenic Intergenic -175531 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 534-21 chr22 29061831 29062107 + 2.5 NA promoter-TSS (NM_015370) promoter-TSS (NM_015370) -50 NM_015370 25770 Hs.50891 NM_015370 ENSG00000100249 C22orf31 HS747E2A|bK747E2.1 chromosome 22 open reading frame 31 protein-coding 705-6 chr5 60903893 60904518 + 2.5 NA intron (NM_001290285, intron 4 of 10) intron (NM_001290285, intron 4 of 10) 40865 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 312-25 chr5 18485351 18485486 + 2.5 NA Intergenic Intergenic 678144 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 512-12 chr20 50218943 50219446 + 2.5 NA Intergenic LTR16A1|LTR|ERVL -27125 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 808.5-2 chr22 25580034 25580764 + 2.5 NA intron (NM_001362778, intron 1 of 19) L1MC5a|LINE|L1 15724 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 416.5-9 chr12 77138853 77139201 + 2.5 NA Intergenic Intergenic -73458 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 342-12 chr18 61376512 61376838 + 2.5 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 43245 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 349.5-10 chr13 102912184 102912399 + 2.5 NA Intergenic Intergenic 32192 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 311-3 chr1 62677406 62677632 + 2.5 NA intron (NM_001367561, intron 1 of 49) intron (NM_001367561, intron 1 of 49) 10849 NM_001272001 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 409-27 chr5 88459634 88459833 + 2.5 NA Intergenic Intergenic -20643 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 324.5-13 chr12 98633907 98634107 + 2.5 NA intron (NM_153687, intron 2 of 2) intron (NM_153687, intron 2 of 2) 10781 NM_201613 121457 Hs.252543 NM_153687 ENSG00000166130 IKBIP IKIP IKBKB interacting protein protein-coding 482.5-14 chr5 115099424 115099898 + 2.5 NA Intergenic L1PA15|LINE|L1 70247 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 427-16 chr2 58243018 58243289 + 2.5 NA Intergenic Intergenic -1773 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 460.5-21 chr4 52339270 52339518 + 2.5 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 288090 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 478.5-4 chr12 3781009 3781267 + 2.5 NA Intergenic L1ME1|LINE|L1 -28029 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 327-2 chr1 161012293 161012460 + 2.5 NA intron (NM_001348091, intron 1 of 8) FLAM_C|SINE|Alu 8776 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 505.5-18 chr7 13620400 13620934 + 2.5 NA Intergenic L1MDa|LINE|L1 365847 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 263-12 chr19 8941395 8941516 + 2.5 NA intron (NM_024690, intron 4 of 83) intron (NM_024690, intron 4 of 83) 39887 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 503-23 chr4 182315314 182315645 + 2.5 NA intron (NM_001080477, intron 1 of 27) L1MEc|LINE|L1 72077 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 841-5 chr8 74246152 74246559 + 2.5 NA intron (NM_020647, intron 3 of 5) intron (NM_020647, intron 3 of 5) 75006 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 294-35 chr7 68565199 68565460 + 2.5 NA Intergenic MER58C|DNA|hAT-Charlie 545076 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 608.5-5 chr5 63923495 63923851 + 2.5 NA Intergenic AluJo|SINE|Alu 38619 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 299.5-7 chr13 53260118 53260237 + 2.5 NA Intergenic Intergenic -108277 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 373-2 chr1 165700344 165700587 + 2.5 NA intron (NR_036683, intron 1 of 3) AluJr|SINE|Alu 1715 NR_036683 440700 Hs.568703 NR_036683 ENSG00000215838 LOC440700 - carbonic anhydrase 14 pseudogene pseudo 291.5-16 chr4 134562696 134562910 + 2.5 NA Intergenic Intergenic 138935 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 467.5-5 chr12 57084914 57085366 + 2.5 NA Intergenic Intergenic -3974 NM_001330305 4665 Hs.159223 NM_005967 ENSG00000166886 NAB2 MADER NGFI-A binding protein 2 protein-coding 336.5-8 chr10 123955632 123955766 + 2.5 NA Intergenic MER31-int|LTR|ERV1 -63892 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 314-18 chr2 201624052 201624184 + 2.5 NA 3' UTR (NM_152388, exon 12 of 12) 3' UTR (NM_152388, exon 12 of 12) -4940 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 430.5-11 chr14 59834490 59834859 + 2.5 NA intron (NM_021136, intron 1 of 8) L1ME1|LINE|L1 36102 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 693-17 chr8 84696244 84696941 + 2.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -9335 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 688.5-5 chr2 234002946 234003376 + 2.5 NA intron (NM_024080, intron 22 of 25) intron (NM_024080, intron 22 of 25) -47541 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 252.5-20 chr5 51381842 51382012 + 2.5 NA intron (NR_046243, intron 1 of 1) intron (NR_046243, intron 1 of 1) 1405 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 606-5 chr17 72558438 72558875 + 2.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 34148 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 410-5 chr12 128345400 128345589 + 2.5 NA intron (NM_001136103, intron 1 of 8) L1PA11|LINE|L1 51402 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 421.5-5 chr11 61024803 61025080 + 2.5 NA Intergenic Intergenic 53261 NM_001254750 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 433.5-6 chr12 2035650 2035908 + 2.5 NA Intergenic Plat_L3|LINE|CR1 -12573 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 412.5-18 chr20 44532449 44532618 + 2.5 NA intron (NM_007066, intron 1 of 3) L2c|LINE|L2 658 NM_007066 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 507.5-9 chr17 64477503 64477813 + 2.5 NA TTS (NM_007215) TTS (NM_007215) 19396 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 559.5-6 chr16 3812450 3812822 + 2.5 NA intron (NM_004380, intron 2 of 30) intron (NM_004380, intron 2 of 30) 67484 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 305.5-30 chr6 38205223 38205377 + 2.5 NA intron (NM_052893, intron 10 of 11) HAL1|LINE|L1 -276296 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 534-15 chr2 65521630 65522084 + 2.5 NA Intergenic L1ME1|LINE|L1 -89258 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 331-14 chr12 79789407 79789629 + 2.5 NA intron (NM_001244990, intron 21 of 24) intron (NM_001244990, intron 21 of 24) -98421 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 492.5-17 chr9 131326819 131327167 + 2.5 NA Intergenic L1ME4a|LINE|L1 37270 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 276-46 chrX 104380679 104380794 + 2.5 NA Intergenic Intergenic -125803 NM_153448 80712 Hs.223782 NM_153448 ENSG00000123576 ESX1 ESX1L|ESXR1 ESX homeobox 1 protein-coding 290.5-31 chr8 127562549 127562755 + 2.5 NA Intergenic Intergenic -80513 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 598.5-9 chr3 158811834 158812117 + 2.5 NA intron (NM_022736, intron 6 of 15) intron (NM_022736, intron 6 of 15) 9921 NM_001289407 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 303-25 chr5 64867487 64867692 + 2.5 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 98659 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 419.5 chr1 237277070 237277310 + 2.5 NA intron (NM_001035, intron 2 of 104) L1M5|LINE|L1 -193929 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 234.5-15 chr2 69782872 69782972 + 2.5 NA intron (NM_001320702, intron 2 of 12) intron (NM_001320702, intron 2 of 12) 40788 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 544-11 chr6 62325447 62325846 + 2.5 NA Intergenic L2a|LINE|L2 -39419 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 319.5-22 chr3 102378421 102378616 + 2.5 NA Intergenic Intergenic -56497 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 483.5-4 chr14 68526486 68526872 + 2.5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 102108 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 425.5-4 chr1 171876916 171877168 + 2.5 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 12850 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 208-3 chr1 208122631 208122778 + 2.5 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 121680 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 137.5-10 chr13 27182456 27182524 + 2.5 NA intron (NR_046548, intron 1 of 1) L1MB4|LINE|L1 10231 NR_046548 100874071 Hs.735400 NR_046548 USP12-AS2 - USP12 antisense RNA 2 (head to head) ncRNA 350-34 chr6 54091892 54092183 + 2.5 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -19406 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 542.5-13 chr2 231483114 231483386 + 2.5 NA Intergenic Intergenic -18766 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23|Nsr1 nucleolin protein-coding 188.5-5 chr14 82603863 82603963 + 2.5 NA Intergenic Intergenic -38719 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 275.5-18 chr2 77147671 77147812 + 2.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 161776 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 624-9 chr5 144707829 144708114 + 2.5 NA Intergenic L1MEf|LINE|L1 502580 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 345-42 chr9 100073796 100074037 + 2.5 NA intron (NM_015051, intron 1 of 11) MER112|DNA|hAT-Charlie 25084 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 538.5-21 chr9 131908774 131909304 + 2.5 NA intron (NM_004269, intron 4 of 7) L2a|LINE|L2 -169095 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 317.5-9 chr14 25000322 25000526 + 2.5 NA intron (NM_001351940, intron 1 of 6) intron (NM_001351940, intron 1 of 6) 48576 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 529-13 chr2 195167696 195167986 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 437246 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 422-27 chr7 54154808 54155148 + 2.5 NA Intergenic Intergenic -175719 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 313.5-18 chr2 39159285 39159559 + 2.5 NA Intergenic Intergenic -38959 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 412.5-2 chr10 86638528 86638831 + 2.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -15868 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 491-29 chr8 47856897 47857332 + 2.5 NA intron (NM_001081640, intron 49 of 84) intron (NM_001081640, intron 49 of 84) 103022 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 244.5-10 chr13 44494924 44495071 + 2.5 NA intron (NM_183422, intron 1 of 2) L1MB5|LINE|L1 -20696 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 569-20 chr9 103476492 103476858 + 2.5 NA Intergenic Intergenic -151642 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 561.5-11 chr4 138114593 138114961 + 2.5 NA intron (NR_038380, intron 3 of 6) intron (NR_038380, intron 3 of 6) 15908 NR_037866 641365 Hs.435630 NR_037866 ENSG00000248307 LINC00616 - long intergenic non-protein coding RNA 616 ncRNA 422-30 chr8 102013639 102013934 + 2.5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) 29354 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 245.5-36 chr7 88826881 88827013 + 2.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -31210 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 279-2 chr1 200005663 200005865 + 2.5 NA Intergenic Intergenic -21946 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 222-14 chr2 52214637 52214786 + 2.5 NA intron (NR_135237, intron 7 of 10) MSTB1|LTR|ERVL-MaLR -155937 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 516.5-4 chr14 89617631 89618055 + 2.5 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 1322 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 418.5-5 chr10 13418081 13418342 + 2.5 NA Intergenic MER1A|DNA|hAT-Charlie -69913 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 453-8 chr15 69937440 69937867 + 2.5 NA Intergenic L1M3c|LINE|L1 102419 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 236.5-24 chr21 28489127 28489239 + 2.5 NA Intergenic Intergenic -50135 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 313.5-30 chr4 74463066 74463217 + 2.5 NA Intergenic L1ME5|LINE|L1 18005 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 574.5-6 chr15 87214125 87214451 + 2.5 NA Intergenic AluJb|SINE|Alu -225862 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 474-8 chr14 62186468 62186800 + 2.5 NA Intergenic Intergenic -46661 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 558-9 chr2 40719623 40720162 + 2.5 NA Intergenic HAL1|LINE|L1 -207457 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 290-5 chr11 82722363 82722538 + 2.5 NA Intergenic Intergenic 11414 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 390-27 chr6 48548618 48548836 + 2.5 NA Intergenic Intergenic -480038 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 551-5 chr10 44934685 44935036 + 2.5 NA exon (NM_001345926, exon 4 of 4) exon (NM_001345926, exon 4 of 4) 23523 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 542.5-5 chr11 40318532 40318791 + 2.5 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) -25531 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 387-4 chr1 118028380 118028575 + 2.5 NA intron (NM_206996, intron 25 of 48) intron (NM_206996, intron 25 of 48) 98738 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 451-9 chr11 29908460 29908817 + 2.5 NA Intergenic L1PA10|LINE|L1 73755 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 347-24 chr8 60718039 60718296 + 2.5 NA intron (NM_017780, intron 1 of 37) Tigger3b|DNA|TcMar-Tigger -23092 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 428-24 chr6 137516304 137516517 + 2.5 NA Intergenic MER34C2|LTR|ERV1 -22016 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 696-6 chr2 102502547 102503032 + 2.5 NA intron (NM_001011552, intron 2 of 11) LTR41B|LTR|ERVL 29563 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 485.5 chr10 51238039 51238389 + 2.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -61359 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 330-20 chr18 62799144 62799348 + 2.5 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 83705 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 291-15 chr2 174435868 174436028 + 2.5 NA 3' UTR (NM_152529, exon 16 of 16) 3' UTR (NM_152529, exon 16 of 16) 40218 NM_024583 79634 Hs.470679 NM_024583 ENSG00000144306 SCRN3 SES3 secernin 3 protein-coding 907.5-3 chr6 139753194 139753848 + 2.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -17552 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 302.5-5 chr10 34145593 34145723 + 2.5 NA intron (NM_001184789, intron 20 of 22) HAL1|LINE|L1 -372978 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 587.5-4 chr11 6901458 6901970 + 2.5 NA Intergenic L1ME5|LINE|L1 -9214 NM_003700 120776 Hs.690210 NM_003700 ENSG00000166368 OR2D2 OR11-610|OR2D1|hg27 olfactory receptor family 2 subfamily D member 2 protein-coding 447-18 chr3 29959645 29959846 + 2.5 NA intron (NM_001003792, intron 11 of 13) THE1C|LTR|ERVL-MaLR -25589 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 494.5 chr10 22901529 22901784 + 2.5 NA Intergenic Intergenic -26368 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 383-2 chr1 216183351 216183624 + 2.5 NA intron (NM_206933, intron 20 of 71) intron (NM_206933, intron 20 of 71) 111022 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 297.5-13 chr15 79456862 79457027 + 2.5 NA exon (NM_015206, exon 2 of 4) exon (NM_015206, exon 2 of 4) 24428 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 435.5-17 chr7 85045894 85046278 + 2.5 NA intron (NM_152754, intron 7 of 16) intron (NM_152754, intron 7 of 16) 75845 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 227.5-8 chr14 61039233 61039351 + 2.5 NA intron (NR_033344, intron 8 of 16) intron (NR_033344, intron 8 of 16) -57602 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 325-17 chr3 131787073 131787319 + 2.5 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 198735 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 588.5-12 chr4 61164000 61164327 + 2.5 NA Intergenic Intergenic 20507 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 599-7 chr18 63375793 63376235 + 2.5 NA Intergenic AluSq2|SINE|Alu -8808 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 618-4 chr1 194459325 194459749 + 2.5 NA Intergenic Intergenic 1154792 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 362.5-28 chr6 36285044 36285235 + 2.5 NA intron (NM_001145717, intron 1 of 7) intron (NM_001145717, intron 1 of 7) 14679 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 560-16 chr5 131100997 131101335 + 2.5 NA Intergenic Intergenic 64090 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 403-2 chr1 90114218 90114491 + 2.5 NA Intergenic Intergenic 119244 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 625.5-11 chr7 47017702 47017998 + 2.5 NA Intergenic L1M5|LINE|L1 -320728 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 386.5-14 chr21 24107865 24108103 + 2.5 NA Intergenic Intergenic 213393 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 636-7 chr12 57674602 57675002 + 2.5 NA Intergenic CpG -19153 NM_001261420 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 324.5-38 chr8 75704275 75704538 + 2.5 NA Intergenic Intergenic 164438 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 444.5-9 chr20 31713939 31714171 + 2.5 NA intron (NR_134257, intron 1 of 2) MIRc|SINE|MIR -7452 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 322-5 chr12 41815757 41815974 + 2.5 NA Intergenic Intergenic 51676 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 269.5-5 chr10 106573226 106573412 + 2.5 NA TTS (NM_052918) TTS (NM_052918) 433154 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 324-36 chr7 79131785 79132020 + 2.5 NA intron (NM_001301128, intron 1 of 20) Charlie29a|DNA|hAT-Charlie 122914 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 369-16 chr12 19516520 19516901 + 2.5 NA intron (NM_001114176, intron 7 of 8) intron (NM_001114176, intron 7 of 8) 76111 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 558-17 chr6 101014828 101015197 + 2.5 NA Intergenic Intergenic -133640 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 427.5-21 chr5 87938324 87938672 + 2.5 NA Intergenic Intergenic 276456 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 344.5-3 chr10 74842183 74842320 + 2.5 NA intron (NM_001370137, intron 2 of 17) intron (NM_001370137, intron 2 of 17) 15651 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 355.5-5 chr12 17678487 17678744 + 2.5 NA Intergenic AluJb|SINE|Alu 5316 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 410.5-16 chr4 68285581 68285829 + 2.5 NA Intergenic Intergenic -40011 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 241.5-3 chr1 185750959 185751121 + 2.5 NA intron (NM_031935, intron 1 of 106) L1MEd|LINE|L1 16649 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 315.5 chr1 9830219 9830520 + 2.5 NA Intergenic Intergenic -5843 NM_001009566 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 338.5-27 chr6 65622289 65622569 + 2.5 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -42625 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 281-5 chr10 54661652 54661808 + 2.5 NA intron (NM_001142771, intron 2 of 34) L1PA17|LINE|L1 -53773 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 516-10 chr14 44998593 44998982 + 2.5 NA intron (NR_131765, intron 2 of 19) intron (NR_131765, intron 2 of 19) 36597 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 344.5-19 chr20 40572264 40572471 + 2.5 NA Intergenic Intergenic 116869 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 483.5-6 chr2 123950623 123950893 + 2.5 NA Intergenic L1MA1|LINE|L1 74416 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 303-32 chr8 47239920 47240066 + 2.5 NA Intergenic Intergenic -20885 NM_001352953 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 591-13 chr8 113147481 113147902 + 2.5 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 229461 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 459-28 chr6 161749474 161749769 + 2.5 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 278644 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 507-14 chr2 211102091 211102364 + 2.5 NA Intergenic L4_A_Mam|LINE|RTE-X 484656 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 303.5-20 chr5 178962483 178962725 + 2.5 NA intron (NM_001178089, intron 4 of 4) L1ME3A|LINE|L1 21406 NM_001178090 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 335-29 chr2 146973359 146973649 + 2.5 NA Intergenic L1MEf|LINE|L1 386447 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 344.5-18 chr20 36779861 36780016 + 2.5 NA 3' UTR (NM_080627, exon 15 of 15) 3' UTR (NM_080627, exon 15 of 15) -6175 NM_001145317 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 528.5-14 chr3 192838305 192838564 + 2.5 NA intron (NM_178496, intron 1 of 1) AluY|SINE|Alu 79422 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 629.5-9 chr7 35703730 35704282 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 8800 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 507.5-13 chr7 38902493 38902812 + 2.5 NA intron (NM_014396, intron 1 of 28) intron (NM_014396, intron 1 of 28) 6539 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 336.5-7 chr10 105503296 105503519 + 2.5 NA Intergenic L1MC5a|LINE|L1 316926 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 604-10 chr17 63417879 63418235 + 2.5 NA intron (NM_025185, intron 24 of 25) intron (NM_025185, intron 24 of 25) 22210 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 381.5-3 chr11 82434820 82435022 + 2.5 NA Intergenic Intergenic -31008 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 641.5-5 chr4 36084843 36085291 + 2.5 NA intron (NR_146894, intron 28 of 32) intron (NR_146894, intron 28 of 32) 158872 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 456.5-22 chr8 117723381 117723595 + 2.5 NA Intergenic AluSq4|SINE|Alu 197425 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 593.5 chr1 68315407 68315719 + 2.5 NA Intergenic AluSg|SINE|Alu -83017 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 262.5-8 chr16 75639641 75639839 + 2.5 NA intron (NM_001130089, intron 4 of 14) intron (NM_001130089, intron 4 of 14) 7947 NM_001130089 3735 Hs.3100 NM_005548 ENSG00000065427 KARS CMTRIB|DFNB89|KARS1|KARS2|KRS lysyl-tRNA synthetase protein-coding 342.5-27 chr5 128690929 128691200 + 2.5 NA Intergenic Intergenic -152819 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 802.5-2 chr19 30254423 30254757 + 2.5 NA Intergenic Intergenic -117794 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 276.5-3 chr1 96720268 96720409 + 2.5 NA Intergenic AluSp|SINE|Alu -1267 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 347-3 chr11 93467447 93467688 + 2.5 NA Intergenic Intergenic 75824 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 361.5-14 chr2 31881153 31881410 + 2.5 NA intron (NR_126032, intron 5 of 6) AluJb|SINE|Alu -77301 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 456-17 chr21 31403388 31403870 + 2.5 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -59275 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 255-4 chr12 61276552 61276797 + 2.5 NA Intergenic Intergenic 916165 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 384-2 chr1 188169126 188169481 + 2.5 NA Intergenic L2a|LINE|L2 725675 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 355.5-17 chr6 19112964 19113258 + 2.5 NA intron (NR_110860, intron 6 of 10) (CTTC)n|Simple_repeat|Simple_repeat 67369 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 438-27 chr5 161283549 161283763 + 2.5 NA Intergenic hAT-16_Crp|DNA|hAT-Charlie 264468 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 299.5-22 chr20 42475808 42475933 + 2.5 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -209613 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 572.5-5 chr20 62666973 62667382 + 2.5 NA promoter-TSS (NR_024470) promoter-TSS (NR_024470) -556 NR_024470 100127888 Hs.671273 NR_024470 ENSG00000232803 SLCO4A1-AS1 - SLCO4A1 antisense RNA 1 ncRNA 693-7 chr20 47616496 47617097 + 2.5 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 114909 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 379-20 chr2 14075681 14075852 + 2.5 NA Intergenic Intergenic 325192 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 911.5 chr3 44715620 44715993 + 2.5 NA intron (NM_033210, intron 2 of 3) AluJb|SINE|Alu 3146 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 316-42 chr7 47350895 47351077 + 2.5 NA intron (NM_022748, intron 17 of 30) L1ME4a|LINE|L1 113817 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 341-28 chr5 118561367 118561581 + 2.5 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 643 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 604-18 chr8 78918851 78919271 + 2.5 NA Intergenic L1MA2|LINE|L1 81532 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 290.5-27 chr6 142920428 142920694 + 2.5 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 24615 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 535-18 chr5 44291246 44291490 + 2.5 NA Intergenic Intergenic -97364 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 383-16 chr2 127839645 127839808 + 2.5 NA Intergenic AluSg7|SINE|Alu 18429 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 164.5-20 chr3 110273310 110273397 + 2.5 NA Intergenic Intergenic 670525 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 365.5-19 chr6 87653270 87653571 + 2.5 NA intron (NM_012381, intron 14 of 19) intron (NM_012381, intron 14 of 19) 48813 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 505-20 chr4 123936944 123937354 + 2.5 NA Intergenic Intergenic 162885 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 430-11 chr13 76631893 76632110 + 2.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 254404 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 522-6 chr11 27607200 27607470 + 2.5 NA intron (NR_033314, intron 3 of 6) intron (NR_033314, intron 3 of 6) 27292 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 554-11 chr16 7231943 7232323 + 2.5 NA intron (NM_018723, intron 4 of 15) AluSx|SINE|Alu -100712 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 454 chr1 162504412 162504732 + 2.5 NA intron (NM_144624, intron 4 of 6) Tigger3b|DNA|TcMar-Tigger 6754 NM_175866 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 484.5 chr1 167490993 167491371 + 2.5 NA intron (NM_000734, intron 1 of 7) L1MB3|LINE|L1 27347 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 625.5-5 chr18 5495701 5496137 + 2.5 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 44637 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 644.5-2 chr15 100047647 100048154 + 2.5 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) 240877 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 390-5 chr14 37984197 37984366 + 2.5 NA Intergenic L1MA9|LINE|L1 -82157 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 476-13 chr14 52667876 52668321 + 2.5 NA intron (NM_014584, intron 6 of 15) Tigger15a|DNA|TcMar-Tigger 27460 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 370.5-23 chr5 131797914 131798103 + 2.5 NA promoter-TSS (NM_001008738) promoter-TSS (NM_001008738) -991 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 447.5-3 chr12 59594770 59594991 + 2.5 NA Intergenic Intergenic -1149 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 445-29 chr7 43520818 43521043 + 2.5 NA intron (NR_038276, intron 1 of 2) intron (NR_038276, intron 1 of 2) 1612 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 423-11 chr15 77518758 77519106 + 2.5 NA Intergenic Intergenic -6663 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 422.5-4 chr16 11251179 11251511 + 2.5 NA Intergenic MIRb|SINE|MIR 4837 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 257.5-33 chr5 46298681 46298871 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -602396 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 784.5-2 chr4 97380293 97380641 + 2.5 NA intron (NR_102713, intron 1 of 5) HERVL-int|LTR|ERVL 13541 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 559-23 chr9 27294210 27294459 + 2.5 NA exon (NM_020641, exon 3 of 8) exon (NM_020641, exon 3 of 8) 2805 NM_001161585 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 609-9 chr22 27319077 27319499 + 2.5 NA Intergenic L1ME3A|LINE|L1 8637 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 585-9 chr2 175404844 175405416 + 2.5 NA Intergenic Intergenic -223420 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 235.5-27 chr8 113662572 113662739 + 2.5 NA Intergenic Intergenic -225716 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 489-36 chr9 80929636 80929966 + 2.5 NA Intergenic L1MA7|LINE|L1 759734 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 538.5-10 chr20 46653859 46654244 + 2.5 NA intron (NM_001193340, intron 2 of 12) L1MB3|LINE|L1 -2592 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 404.5-10 chr18 7914987 7915179 + 2.5 NA intron (NM_002845, intron 4 of 30) L4_C_Mam|LINE|RTE-X 347767 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 292-19 chr2 219192042 219192276 + 2.5 NA Intergenic MIRb|SINE|MIR 13450 NM_001321110 79137 Hs.516707 NM_024293 ENSG00000144567 RETREG2 C2orf17|FAM134A|MAG-2 reticulophagy regulator family member 2 protein-coding 370.5-16 chr3 13253113 13253419 + 2.5 NA Intergenic MIR|SINE|MIR 167056 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 448.5-22 chrX 63422561 63422836 + 2.5 NA Intergenic L1M1|LINE|L1 -71366 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 622-12 chr5 155713144 155713581 + 2.5 NA Intergenic Intergenic -613395 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 605.5-9 chr8 111578737 111579329 + 2.5 NA Intergenic Intergenic 202394 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 444.5-12 chr3 120945118 120945414 + 2.5 NA intron (NR_145517, intron 2 of 8) intron (NR_145517, intron 2 of 8) 36589 NM_001348345 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 470-23 chr22 38413996 38414259 + 2.5 NA Intergenic FAM|SINE|Alu -15201 NR_002821 400927 Hs.720223 NR_002821 TPTEP2 Z98749.2 TPTE pseudogene 2 pseudo 477-7 chr16 5236325 5236531 + 2.5 NA Intergenic Intergenic -138608 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 445-6 chr14 70888599 70888857 + 2.5 NA Intergenic Intergenic -18731 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 243.5-5 chr10 44795080 44795306 + 2.5 NA Intergenic MER103C|DNA|hAT-Charlie -116123 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 557-23 chr8 118530296 118530757 + 2.5 NA intron (NM_001101676, intron 2 of 4) L1PB4|LINE|L1 -90475 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 560.5-3 chr10 36286226 36286677 + 2.5 NA Intergenic L1MA8|LINE|L1 508149 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 294-25 chr22 49331378 49331620 + 2.5 NA Intergenic Intergenic 211967 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 404.5-15 chr2 210396591 210396868 + 2.5 NA intron (NR_110606, intron 1 of 4) L2b|LINE|L2 72017 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 251.5-13 chr17 61169641 61169871 + 2.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 197948 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 322-8 chr12 92412631 92412817 + 2.5 NA Intergenic Intergenic -8807 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 284.5-24 chr2 44759960 44760144 + 2.5 NA intron (NM_024766, intron 9 of 10) L2b|LINE|L2 178836 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 301.5-21 chr8 83624033 83624276 + 2.5 NA Intergenic L1PREC2|LINE|L1 220396 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 276.5-4 chr1 111890461 111890581 + 2.5 NA intron (NM_172198, intron 2 of 6) L2a|LINE|L2 -19136 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 245.5-21 chr22 34995634 34995820 + 2.5 NA intron (NR_138042, intron 1 of 4) MIRb|SINE|MIR 2189 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 470-30 chr4 151980382 151980743 + 2.5 NA Intergenic Charlie7|DNA|hAT-Charlie -120191 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 434.5-17 chr7 51238098 51238428 + 2.5 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 78546 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 413.5 chr1 186135179 186135585 + 2.5 NA intron (NM_031935, intron 86 of 106) L2b|LINE|L2 -160891 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 598.5-7 chr20 31177472 31177948 + 2.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -79954 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 365-26 chr5 175468509 175468676 + 2.5 NA Intergenic L1M5|LINE|L1 -9968 NM_022754 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 353-13 chr15 52023804 52023998 + 2.5 NA intron (NM_002748, intron 1 of 5) AluSc|SINE|Alu 4682 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 311.5-3 chr1 61921374 61921587 + 2.5 NA intron (NM_001350145, intron 26 of 43) intron (NM_001350145, intron 26 of 43) 75405 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 235-12 chr15 34733002 34733140 + 2.5 NA Intergenic Intergenic 21927 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 479-4 chr10 113135425 113135666 + 2.5 NA intron (NM_001349870, intron 1 of 11) intron (NM_001349870, intron 1 of 11) 6274 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 233-27 chr7 139809081 139809174 + 2.5 NA intron (NM_001166254, intron 3 of 14) MLT2B3|LTR|ERVL -20137 NM_001166253 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 856.5-5 chr8 88756448 88756846 + 2.5 NA Intergenic L1ME2|LINE|L1 -429164 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 303-24 chr5 3697967 3698130 + 2.5 NA Intergenic Intergenic 102216 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 449-6 chr10 113570946 113571288 + 2.5 NA intron (NM_001177660, intron 2 of 12) MLT1H|LTR|ERVL-MaLR 18064 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 618.5-9 chr7 97681543 97681957 + 2.5 NA Intergenic MER21-int|LTR|ERVL -50336 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 474-15 chr2 230698925 230699209 + 2.5 NA intron (NR_040038, intron 1 of 3) AluSz6|SINE|Alu 1462 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 602-13 chr2 189627642 189627947 + 2.5 NA Intergenic Intergenic -33605 NM_001353494 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 412.5-8 chr12 46144964 46145266 + 2.5 NA Intergenic Intergenic 121401 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 327-45 chr7 152132413 152132583 + 2.5 NA Intergenic Intergenic 57461 NM_001371474 531-3 chr12 48095674 48096160 + 2.5 NA intron (NR_051992, intron 4 of 18) intron (NR_051992, intron 4 of 18) -9336 NM_001354747 5213 Hs.75160 NM_000289 ENSG00000152556 PFKM ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122 phosphofructokinase, muscle protein-coding 342.5-21 chr20 20747085 20747278 + 2.5 NA Intergenic Intergenic -34537 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 437-17 chr16 47509134 47509494 + 2.5 NA intron (NM_001031835, intron 5 of 31) intron (NM_001031835, intron 5 of 31) 47983 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 477-8 chr17 47840865 47841168 + 2.5 NA intron (NM_138355, intron 1 of 7) CpG 257 NM_001145023 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 388-2 chr1 171119072 171119278 + 2.5 NA Intergenic L1M2|LINE|L1 -17369 NR_031627 100302178 NR_031627 ENSG00000221390 MIR1295A MIR1295|MIRN1295|hsa-mir-1295|hsa-mir-1295a|mir-1295a microRNA 1295a ncRNA 277.5-30 chr6 160033085 160033218 + 2.5 NA intron (NM_000876, intron 9 of 47) AluJb|SINE|Alu -25487 NR_047511 100271873 Hs.742166 NR_047511 ENSG00000268257 AIRN AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 antisense of IGF2R non-protein coding RNA ncRNA 369-14 chr11 111385574 111385820 + 2.5 NA Intergenic L1M5|LINE|L1 -6422 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 314.5-3 chr10 31809233 31809450 + 2.5 NA intron (NM_001270696, intron 14 of 17) intron (NM_001270696, intron 14 of 17) 99585 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 433 chr1 61605585 61605826 + 2.5 NA Intergenic L2a|LINE|L2 -48537 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 672-11 chr4 21363108 21363742 + 2.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -59519 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 582-4 chr11 100367318 100367550 + 2.5 NA Intergenic L1MC5a|LINE|L1 -319854 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 363-25 chr5 60285451 60285692 + 2.5 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 87092 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 416.5-3 chr10 55982876 55983182 + 2.5 NA Intergenic Intergenic -355087 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 215-29 chr5 120247280 120247426 + 2.5 NA Intergenic Intergenic -216925 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 282.5-25 chr5 65265436 65265690 + 2.5 NA intron (NR_135689, intron 13 of 25) intron (NR_135689, intron 13 of 25) 216357 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 461-3 chr10 88128327 88128715 + 2.5 NA Intergenic Intergenic 264896 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 719.5-5 chr4 80802649 80803205 + 2.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -227781 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 345-6 chr11 9621460 9621675 + 2.5 NA Intergenic Intergenic -42510 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 509 chr1 220936981 220937386 + 2.5 NA Intergenic AluSg4|SINE|Alu -57043 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 470-10 chr12 43639385 43639626 + 2.5 NA Intergenic Intergenic -87302 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 323-7 chr12 27584351 27584559 + 2.5 NA intron (NM_001198915, intron 2 of 26) Tigger17a|DNA|TcMar-Tigger 60249 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 249-34 chr8 106009921 106010092 + 2.5 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 50497 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 432.5-13 chr3 76259516 76259878 + 2.5 NA Intergenic LTR40a|LTR|ERVL -474148 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 580-14 chr4 6309748 6310195 + 2.5 NA Intergenic MLT2B3|LTR|ERVL 40121 NM_006005 7466 Hs.518602 NM_006005 ENSG00000109501 WFS1 CTRCT41|WFRS|WFS|WFSL wolframin ER transmembrane glycoprotein protein-coding 628.5 chr1 101929222 101929711 + 2.5 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 57454 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 635.5-8 chr2 107249785 107250180 + 2.5 NA intron (NR_049853, intron 2 of 3) L1MC1|LINE|L1 99543 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 336-31 chr2 127028182 127028455 + 2.5 NA Intergenic L1MC5a|LINE|L1 53747 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 533-24 chr5 23663769 23664074 + 2.5 NA Intergenic MER103C|DNA|hAT-Charlie 156266 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 507.5-12 chr5 126103186 126103518 + 2.5 NA Intergenic L1M2|LINE|L1 -76225 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 407.5-8 chr15 61472505 61472739 + 2.5 NA Intergenic Intergenic -243320 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 358-9 chr10 110511538 110511937 + 2.5 NA TTS (NM_004419) TTS (NM_004419) 13830 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 256-9 chr15 35708145 35708248 + 2.5 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 162001 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 628-11 chr4 61928479 61928779 + 2.5 NA intron (NM_001322246, intron 12 of 25) intron (NM_001322246, intron 12 of 25) 233136 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 371-12 chr2 25778131 25778534 + 2.5 NA intron (NM_001369346, intron 3 of 10) MLT1D|LTR|ERVL-MaLR 16359 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 479.5-23 chr9 86192554 86192827 + 2.5 NA Intergenic MSTB-int|LTR|ERVL-MaLR 63343 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 500.5-8 chr20 39118644 39119222 + 2.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 105815 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 313-42 chr9 100850682 100850905 + 2.5 NA Intergenic Intergenic -177934 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 324.5-23 chr2 135499987 135500174 + 2.5 NA intron (NM_001286569, intron 2 of 21) MLT1C|LTR|ERVL-MaLR 30505 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 762.5-2 chr18 4041294 4041842 + 2.5 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 79215 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 283.5-33 chr6 166599601 166599743 + 2.5 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 27579 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 537.5-10 chr2 40635912 40636242 + 2.5 NA Intergenic Intergenic -123642 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 495.5-5 chr12 7491987 7492275 + 2.5 NA intron (NR_163255, intron 6 of 16) intron (NR_163255, intron 6 of 16) 11646 NM_001370146 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 395.5-22 chr3 63149795 63150053 + 2.5 NA Intergenic L2a|LINE|L2 47236 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 290-18 chr2 136642380 136642669 + 2.5 NA Intergenic L1MC5a|LINE|L1 -123021 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 385.5-13 chr14 73672028 73672235 + 2.5 NA intron (NM_001201366, intron 6 of 8) intron (NM_001201366, intron 6 of 8) 27145 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 240-2 chr1 119271417 119271577 + 2.5 NA intron (NR_125975, intron 6 of 6) L1MEb|LINE|L1 -56755 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 267-47 chr7 93436755 93436886 + 2.5 NA intron (NM_001164738, intron 10 of 12) L1M5|LINE|L1 46035 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 725-8 chr5 74619311 74619737 + 2.5 NA Intergenic Intergenic -20499 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 334-8 chr12 64266823 64267222 + 2.5 NA 3' UTR (NM_001170633, exon 13 of 13) 3' UTR (NM_001170633, exon 13 of 13) -44726 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 423-35 chr7 70381912 70382170 + 2.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -750103 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 714.5 chr10 99060063 99060490 + 2.5 NA intron (NM_021828, intron 3 of 11) L1MA3|LINE|L1 -135708 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 490.5-21 chr8 135364513 135364993 + 2.5 NA Intergenic MIR|SINE|MIR -92703 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 253-24 chr3 147421742 147421897 + 2.5 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 492 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 598-7 chr5 18366029 18366541 + 2.5 NA Intergenic Intergenic 559011 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 158-7 chr2 63477157 63477244 + 2.5 NA intron (NR_148704, intron 7 of 18) intron (NR_148704, intron 7 of 18) -39193 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 572-17 chr7 56040276 56040576 + 2.5 NA intron (NM_001370519, intron 1 of 8) AluSz6|SINE|Alu 11018 NM_001370513 5723 Hs.512656 NM_004577 ENSG00000146733 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 350-41 chr8 40593384 40593538 + 2.5 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) -250098 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 653-10 chr6 81683331 81683876 + 2.5 NA Intergenic MamGypsy2-LTR|LTR|Gypsy 69078 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 612-6 chr12 115513258 115513601 + 2.5 NA Intergenic Intergenic 635225 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 416.5-8 chr11 120148666 120148971 + 2.5 NA Intergenic Intergenic -10705 NM_012101 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 228-18 chr8 141110875 141110999 + 2.5 NA Intergenic Intergenic -17652 NM_001362798 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 340-36 chr8 56319546 56319806 + 2.5 NA intron (NM_001318050, intron 1 of 5) intron (NM_001318050, intron 1 of 5) 1100 NM_001318049 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 632.5-6 chr7 24237137 24237577 + 2.5 NA Intergenic MER84-int|LTR|ERV1 -46833 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 583.5-4 chr13 63067654 63067920 + 2.5 NA Intergenic Intergenic 260307 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 278-9 chr13 39460448 39460592 + 2.5 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 142673 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 427-18 chr20 54499453 54499817 + 2.5 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 24042 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 490-5 chr12 64260883 64261156 + 2.5 NA Intergenic Intergenic -38723 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 686.5-4 chr2 110943389 110943723 + 2.5 NA intron (NM_001142807, intron 12 of 17) intron (NM_001142807, intron 12 of 17) 172032 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 311.5-22 chr2 57435460 57435758 + 2.5 NA Intergenic Intergenic -472042 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 542.5-2 chr10 7214108 7214510 + 2.5 NA intron (NM_001029880, intron 11 of 20) intron (NM_001029880, intron 11 of 20) -27525 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 462-7 chr10 73999251 73999782 + 2.5 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 1400 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 571.5-15 chrX 108885216 108885680 + 2.5 NA Intergenic L1MA8|LINE|L1 148908 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 542-8 chr14 30413010 30413299 + 2.5 NA Intergenic Intergenic -145969 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 586-15 chr7 53789394 53789885 + 2.5 NA intron (NR_038371, intron 1 of 5) L1MEd|LINE|L1 22292 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 534.5-7 chr5 45220540 45220778 + 2.5 NA Intergenic Intergenic 411712 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 643-7 chr17 72270119 72270672 + 2.5 NA Intergenic Intergenic -72416 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 250 chr1 48454477 48454612 + 2.5 NA intron (NM_019073, intron 1 of 12) intron (NM_019073, intron 1 of 12) 17660 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 338-39 chr9 38005515 38005667 + 2.5 NA intron (NM_003028, intron 2 of 5) MIRc|SINE|MIR 63636 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 394.5-2 chr1 15910556 15910838 + 2.5 NA intron (NM_015001, intron 4 of 14) L1MC5a|LINE|L1 -62550 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 472.5-6 chr16 58962498 58962756 + 2.5 NA Intergenic Intergenic -228311 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 519-11 chr2 59223855 59224166 + 2.5 NA intron (NR_110219, intron 1 of 2) MIR|SINE|MIR 6302 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 493-11 chr16 80578478 80578675 + 2.5 NA Intergenic Intergenic -5768 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 335-51 chr8 126217234 126217411 + 2.5 NA Intergenic Intergenic -108173 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 220.5-28 chr5 121685676 121685832 + 2.5 NA Intergenic Intergenic -166128 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 312.5-20 chr3 177243119 177243314 + 2.5 NA Intergenic Intergenic -45734 NM_024665 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 472.5-19 chr7 108844263 108844617 + 2.5 NA Intergenic FAM|SINE|Alu 40147 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 500-5 chr16 82116319 82116698 + 2.5 NA Intergenic L2|LINE|L2 53716 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 247.5-18 chr3 24268456 24268655 + 2.5 NA intron (NM_001354708, intron 2 of 9) HAL1b|LINE|L1 117231 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 566.5-6 chr3 146765990 146766339 + 2.5 NA Intergenic Intergenic -155759 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 552.5-4 chr11 84893720 84894414 + 2.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 29354 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 373-36 chr6 93734713 93735330 + 2.5 NA intron (NR_152795, intron 3 of 6) intron (NR_152795, intron 3 of 6) 16718 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 225-2 chr1 190591550 190591649 + 2.5 NA Intergenic LTR9D|LTR|ERV1 -33291 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 470.5-13 chr8 14475131 14475461 + 2.5 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 378214 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 467-23 chr6 127438679 127438936 + 2.5 NA 3' UTR (NM_001012279, exon 12 of 12) 3' UTR (NM_001012279, exon 12 of 12) 20582 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 396.5-25 chr3 132786034 132786210 + 2.5 NA intron (NR_002811, intron 3 of 10) L1PA13|LINE|L1 -63663 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 513-16 chr2 67391781 67392024 + 2.5 NA Intergenic Intergenic -5431 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 205-26 chr6 27369651 27369780 + 2.5 NA intron (NR_024553, intron 2 of 4) intron (NR_024553, intron 2 of 4) 1810 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 528.5-15 chr5 31264895 31265275 + 2.5 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 71399 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 838-6 chr21 27152788 27153156 + 2.5 NA Intergenic Intergenic -185884 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 530-15 chr2 240884228 240884517 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 7663 NM_024861 79919 Hs.193745 NM_024861 ENSG00000172478 MAB21L4 C2orf54 mab-21 like 4 protein-coding 452.5-9 chr2 208796449 208796933 + 2.5 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 254049 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 640.5-3 chr14 25435359 25435888 + 2.5 NA Intergenic L1P3|LINE|L1 -385326 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 641-12 chr6 38751513 38751965 + 2.5 NA intron (NM_001371, intron 8 of 91) intron (NM_001371, intron 8 of 91) 36428 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 413-7 chr10 68766997 68767316 + 2.5 NA intron (NR_104262, intron 16 of 23) intron (NR_104262, intron 16 of 23) 11984 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 316.5-27 chr8 88472136 88472328 + 2.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -144749 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 275-38 chr7 108631323 108631499 + 2.5 NA Intergenic MER103C|DNA|hAT-Charlie 61537 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 424-8 chr2 163563175 163563546 + 2.5 NA Intergenic MER44B|DNA|TcMar-Tigger 172648 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 360.5-25 chr8 25316211 25316452 + 2.5 NA intron (NM_024940, intron 13 of 51) AluJb|SINE|Alu -29071 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 283-9 chr11 8374445 8374633 + 2.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -105752 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 328.5-6 chr11 42004856 42005082 + 2.5 NA intron (NR_135065, intron 9 of 9) intron (NR_135065, intron 9 of 9) 80489 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 434.5-2 chr10 78111483 78111760 + 2.5 NA Intergenic L1ME2|LINE|L1 77758 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 369-34 chr5 32932586 32932841 + 2.5 NA Intergenic Intergenic -14730 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 315.5-25 chr3 129597762 129597930 + 2.5 NA intron (NM_015103, intron 1 of 35) intron (NM_015103, intron 1 of 35) 8893 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 580-8 chr18 30078949 30079256 + 2.5 NA Intergenic L1MA4A|LINE|L1 -219808 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 522.5 chr1 11700251 11700624 + 2.5 NA intron (NM_198545, intron 1 of 6) Charlie15b|DNA|hAT-Charlie 8727 NM_198545 374946 Hs.632364 NM_198545 ENSG00000162490 DRAXIN AGPA3119|C1orf187|UNQ3119|neucrin dorsal inhibitory axon guidance protein protein-coding 338-40 chr9 78423731 78424007 + 2.5 NA Intergenic L1ME4a|LINE|L1 126744 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 352-38 chr8 10064433 10064604 + 2.5 NA intron (NM_001135670, intron 1 of 4) intron (NM_001135670, intron 1 of 4) 10226 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 381-11 chr19 45264646 45264911 + 2.5 NA intron (NM_001199867, intron 5 of 16) (CCCTGC)n|Simple_repeat|Simple_repeat 13507 NM_031417 57787 Hs.34314 NM_031417 ENSG00000007047 MARK4 MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D microtubule affinity regulating kinase 4 protein-coding 535.5-4 chr12 51945779 51946182 + 2.5 NA Intergenic AluSq2|SINE|Alu -5719 NM_020328 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 497-11 chr4 27113816 27114103 + 2.5 NA Intergenic L2c|LINE|L2 -103520 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 242-19 chr3 190863637 190863795 + 2.5 NA Intergenic Intergenic -1022 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 372.5-2 chr10 90780934 90781148 + 2.5 NA intron (NM_019860, intron 1 of 2) L1ME4b|LINE|L1 76998 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 803 chr10 52990003 52990371 + 2.5 NA Intergenic Intergenic -218487 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 403.5-23 chr8 88785166 88785465 + 2.5 NA Intergenic Intergenic -457832 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 345.5-16 chr2 23216810 23217006 + 2.5 NA Intergenic Intergenic -168271 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 232.5-24 chr3 98758782 98759011 + 2.5 NA intron (NM_001323366, intron 2 of 11) MIR|SINE|MIR -4411 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 681-10 chr7 30960448 30960758 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -3350 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 369.5-4 chr1 197692764 197692956 + 2.5 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 82620 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 414.5-18 chr4 21329073 21329265 + 2.5 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -25263 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 315.5-2 chr1 47027941 47028214 + 2.5 NA intron (NM_178033, intron 1 of 11) intron (NM_178033, intron 1 of 11) 4408 NM_178033 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 659.5-6 chr4 30756979 30757313 + 2.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 36777 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 334-15 chr2 142666003 142666262 + 2.5 NA Intergenic Intergenic -211532 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 442-3 chr1 117015740 117016072 + 2.5 NA intron (NM_001256109, intron 4 of 9) intron (NM_001256109, intron 4 of 9) 14156 NM_004258 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 331.5-24 chr7 119663275 119663475 + 2.5 NA intron (NR_131960, intron 4 of 4) L1MA2|LINE|L1 244000 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 323.5 chr1 4773295 4773455 + 2.5 NA intron (NM_018836, intron 4 of 5) intron (NM_018836, intron 4 of 5) 118766 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 436-31 chr7 47832442 47832724 + 2.5 NA intron (NM_138295, intron 41 of 56) intron (NM_138295, intron 41 of 56) 37292 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 650.5-6 chr14 66445233 66445627 + 2.5 NA Intergenic MIRc|SINE|MIR -40941 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 710.5-4 chr8 80018477 80018915 + 2.5 NA intron (NM_014018, intron 1 of 2) L1MA3|LINE|L1 11563 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 329-35 chr8 52322065 52322231 + 2.5 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -67656 NM_001352849 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 564-27 chr8 120614482 120614973 + 2.5 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -146526 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 348.5-3 chr11 105866839 105867021 + 2.5 NA intron (NR_046356, intron 4 of 16) intron (NR_046356, intron 4 of 16) 155310 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 582-13 chr20 12611996 12612248 + 2.5 NA Intergenic L1ME3E|LINE|L1 324841 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 409.5-5 chr12 68866585 68866867 + 2.5 NA intron (NM_001874, intron 7 of 8) intron (NM_001874, intron 7 of 8) 57702 NM_001278462 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 541.5-13 chr2 75457258 75457509 + 2.5 NA Intergenic L1ME4a|LINE|L1 -66685 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 1065.5-2 chr2 88386409 88387046 + 2.5 NA Intergenic L1MB7|LINE|L1 65966 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 573-6 chr17 82461458 82461887 + 2.5 NA intron (NM_001083608, intron 2 of 9) MIRb|SINE|MIR 2931 NM_012336 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 572 chr1 39174804 39175120 + 2.5 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 90795 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 549-8 chr2 188848125 188848538 + 2.5 NA Intergenic L1ME3|LINE|L1 -58208 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 429-3 chr1 228903550 228903833 + 2.5 NA Intergenic LTR67B|LTR|ERVL 168212 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 368.5-3 chr1 155488964 155489182 + 2.5 NA intron (NM_018489, intron 2 of 27) intron (NM_018489, intron 2 of 27) 55893 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 740.5-5 chr17 53903738 53904176 + 2.5 NA Intergenic L1PA7|LINE|L1 81030 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 426.5-9 chr12 70969533 70969827 + 2.5 NA Intergenic L1PA10|LINE|L1 -48942 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 430.5-13 chr17 67662768 67663064 + 2.5 NA intron (NM_181671, intron 6 of 9) L1MB7|LINE|L1 -54917 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 539.5-4 chr10 129602620 129602848 + 2.5 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 135493 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 446.5-25 chr8 90457017 90457297 + 2.5 NA Intergenic LTR90B|LTR|LTR 148906 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 742.5-5 chr2 237438495 237438830 + 2.5 NA Intergenic L1MEj|LINE|L1 -24455 NM_057167 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 369.5-22 chr5 93743972 93744226 + 2.5 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -2499 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 402.5-20 chr2 216867628 216867941 + 2.5 NA promoter-TSS (NR_135525) promoter-TSS (NR_135525) 25 NR_135525 105373876 Hs.149762 NR_135525 ENSG00000237479 LOC105373876 - uncharacterized LOC105373876 ncRNA 494-4 chr11 58377581 58378037 + 2.5 NA Intergenic L1MA5|LINE|L1 -18740 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 368-32 chr4 123791934 123792142 + 2.5 NA intron (NR_027106, intron 1 of 2) intron (NR_027106, intron 1 of 2) 17774 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 779.5-3 chr20 32362812 32363254 + 2.5 NA intron (NM_001363734, intron 1 of 10) intron (NM_001363734, intron 1 of 10) 3968 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 852.5-4 chr7 54024597 54025125 + 2.5 NA Intergenic L1PB1|LINE|L1 -212930 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 472.5-13 chr5 10506391 10506621 + 2.5 NA non-coding (NR_134290, exon 2 of 3) non-coding (NR_134290, exon 2 of 3) 2688 NR_134290 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 552.5-7 chr16 49439009 49439491 + 2.5 NA Intergenic Intergenic 65446 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 373.5-28 chr8 138394302 138394466 + 2.5 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 102877 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 592-12 chr6 118701620 118701962 + 2.5 NA intron (NM_001178035, intron 1 of 13) L1PA16|LINE|L1 8284 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 390.5-14 chr2 153199608 153199809 + 2.5 NA Intergenic FordPrefect|DNA|hAT-Tip100 279054 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 297-12 chr18 45921237 45921466 + 2.5 NA intron (NM_020964, intron 16 of 43) intron (NM_020964, intron 16 of 43) 45978 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 304.5-36 chr5 122658653 122658972 + 2.5 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) 71748 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 347-19 chr3 128449161 128449360 + 2.5 NA Intergenic L1MC5a|LINE|L1 -14334 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 340-10 chr11 14249531 14249882 + 2.5 NA intron (NM_006108, intron 7 of 15) intron (NM_006108, intron 7 of 15) 108779 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 844-4 chr5 85947282 85947651 + 2.5 NA Intergenic Intergenic -334978 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 216.5-31 chr5 6552480 6552632 + 2.5 NA Intergenic Intergenic -29580 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 411-28 chr3 196179135 196179324 + 2.5 NA Intergenic L1ME3E|LINE|L1 32171 NR_135618 131540 Hs.111591 NM_001039617 ENSG00000163958 ZDHHC19 DHHC19 zinc finger DHHC-type containing 19 protein-coding 416-10 chr15 88417451 88417674 + 2.5 NA Intergenic L1ME1|LINE|L1 49826 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 418.5-17 chr3 53554582 53554994 + 2.5 NA intron (NM_001128840, intron 3 of 47) L2b|LINE|L2 60177 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 583-11 chr4 131649596 131649865 + 2.5 NA Intergenic Intergenic -115108 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 494.5-6 chr2 164190499 164190726 + 2.5 NA Intergenic Intergenic 377883 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 397.5-10 chr14 71562109 71562393 + 2.5 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -24047 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 522.5-16 chr8 115612584 115612935 + 2.5 NA intron (NM_001282902, intron 2 of 5) intron (NM_001282902, intron 2 of 5) 55254 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 367-23 chr3 109790190 109790338 + 2.5 NA Intergenic AluSc|SINE|Alu 187436 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 250.5-35 chr6 142046640 142046827 + 2.5 NA Intergenic Intergenic 42066 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 627.5-4 chr12 98020284 98020708 + 2.5 NA Intergenic Intergenic -25048 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 769-5 chr4 106827605 106828047 + 2.5 NA Intergenic L1ME1|LINE|L1 208487 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 426-28 chr3 119164217 119164520 + 2.5 NA Intergenic Intergenic -9230 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 671-3 chr11 103958674 103959058 + 2.5 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -77774 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 509-14 chr3 15315673 15315940 + 2.5 NA intron (NM_001018009, intron 2 of 8) intron (NM_001018009, intron 2 of 8) 16780 NM_004844 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 522-8 chr11 132224948 132225208 + 2.5 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) -59224 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 381-25 chr6 37709478 37709708 + 2.5 NA Intergenic MIR|SINE|MIR -11710 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 349-38 chr8 123235069 123235334 + 2.5 NA intron (NM_001204180, intron 4 of 5) intron (NM_001204180, intron 4 of 5) 6176 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 562.5-21 chr4 108654387 108654661 + 2.5 NA intron (NM_001267817, intron 1 of 2) L2a|LINE|L2 3925 NM_021227 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 337-22 chr4 49098470 49098656 + 2.5 NA Intergenic (CATTC)n|Satellite|Satellite 111921 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 288.5-16 chr14 73255123 73255299 + 2.5 NA intron (NM_001365907, intron 13 of 25) L2c|LINE|L2 -9210 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 703-3 chr6 74903249 74903748 + 2.5 NA Intergenic L1ME4c|LINE|L1 225284 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 335-55 chr9 38647395 38647654 + 2.5 NA Intergenic L1MA3|LINE|L1 26436 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 700-10 chr3 20493372 20493834 + 2.5 NA Intergenic L1M1|LINE|L1 151135 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 513.5-12 chr2 189189266 189189687 + 2.5 NA Intergenic AluJr|SINE|Alu -9715 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 785-2 chr2 142332253 142332741 + 2.5 NA Intergenic Intergenic -200796 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 521.5 chr12 41259973 41260241 + 2.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 71787 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 345.5-32 chr8 40942805 40943048 + 2.5 NA Intergenic Intergenic -45100 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 229-21 chr4 44075395 44075565 + 2.5 NA Intergenic Intergenic 58418 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 605.5-10 chr9 99864823 99865195 + 2.5 NA 3' UTR (NM_173200, exon 9 of 9) 3' UTR (NM_173200, exon 9 of 9) 41592 NR_038853 441461 Hs.163155 NR_038853 ENSG00000255145 STX17-AS1 - STX17 antisense RNA 1 ncRNA 428.5-5 chr11 47785483 47785700 + 2.5 NA intron (NM_015231, intron 32 of 35) intron (NM_015231, intron 32 of 35) -18250 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 374.5-11 chr16 80226962 80227237 + 2.5 NA intron (NR_120307, intron 2 of 5) MLT1H-int|LTR|ERVL-MaLR -313635 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 585.5-6 chr5 61104092 61104381 + 2.5 NA intron (NM_174889, intron 3 of 3) intron (NM_174889, intron 3 of 3) -58080 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 677-12 chr5 126578949 126579409 + 2.5 NA intron (NM_001202404, intron 5 of 15) L2c|LINE|L2 16040 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 357-14 chr15 67586055 67586276 + 2.5 NA intron (NM_001206804, intron 5 of 21) intron (NM_001206804, intron 5 of 21) 37071 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 798-5 chr8 130835522 130836049 + 2.5 NA intron (NM_001115, intron 12 of 17) MER2|DNA|TcMar-Tigger 205124 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 400.5-22 chr5 144062592 144062825 + 2.5 NA Intergenic Intergenic 107951 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 542-3 chr10 102497421 102497782 + 2.5 NA intron (NM_005736, intron 1 of 10) AluJo|SINE|Alu 5111 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 actin related protein 1A protein-coding 403-27 chr21 25460408 25460796 + 2.5 NA Intergenic Intergenic -28901 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 227.5-29 chr7 114848658 114848810 + 2.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -73420 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 433-8 chr13 33104171 33104451 + 2.5 NA 3' UTR (NM_001243476, exon 18 of 18) 3' UTR (NM_001243476, exon 18 of 18) 81780 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 384.5-15 chr2 225832636 225833081 + 2.5 NA Intergenic Intergenic -309936 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 520.5-12 chr3 61132809 61133317 + 2.5 NA intron (NR_148922, intron 2 of 3) L2c|LINE|L2 118389 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 257.5-31 chr4 74232859 74233014 + 2.5 NA intron (NM_001144978, intron 6 of 7) L1ME4a|LINE|L1 74818 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 265.5-16 chr19 27744744 27744915 + 2.5 NA Intergenic HSAT4|Satellite|centr -48602 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 305.5-12 chr2 5269931 5270096 + 2.5 NA Intergenic L1PB2|LINE|L1 421105 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 403-11 chr11 95555115 95555556 + 2.5 NA Intergenic L2a|LINE|L2 234447 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 376-21 chr4 47004394 47004633 + 2.5 NA Intergenic L1MA3|LINE|L1 -10932 NM_001204267 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 247.5-34 chr8 118340751 118341017 + 2.5 NA 3' UTR (NM_001363274, exon 5 of 5) 3' UTR (NM_001363274, exon 5 of 5) -229065 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 421.5-2 chr1 215661119 215661313 + 2.5 NA intron (NM_206933, intron 64 of 71) LTR33|LTR|ERVL 93912 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 222-6 chr13 90828152 90828271 + 2.5 NA Intergenic Intergenic 98386 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 509-11 chr2 196960425 196960710 + 2.5 NA Intergenic Intergenic -33860 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 411-29 chr4 166264174 166264564 + 2.5 NA Intergenic Intergenic 391132 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 528.5 chr1 41576956 41577234 + 2.5 NA intron (NM_024503, intron 4 of 8) intron (NM_024503, intron 4 of 8) -92412 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 290-28 chr6 67985518 67985677 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -69754 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 462.5-23 chr8 83987434 83987770 + 2.5 NA Intergenic Intergenic -195185 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 474.5-10 chr5 110656525 110656964 + 2.5 NA intron (NM_001039763, intron 2 of 13) AluY|SINE|Alu 69927 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 348-17 chr17 30251018 30251344 + 2.5 NA intron (NM_000386, intron 11 of 11) L1PB2|LINE|L1 -15484 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 727-10 chr8 87399694 87400290 + 2.5 NA Intergenic Intergenic 474023 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 651.5-6 chr5 35774782 35775339 + 2.5 NA intron (NM_024867, intron 28 of 36) L2a|LINE|L2 -81831 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 566 chr10 64377473 64377713 + 2.5 NA Intergenic Intergenic -447935 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 579.5-14 chr6 50841742 50842031 + 2.5 NA intron (NM_003221, intron 6 of 6) intron (NM_003221, intron 6 of 6) 23015 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 254.5-23 chr18 78090164 78090363 + 2.5 NA Intergenic Intergenic -96536 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 466.5-21 chr6 119943594 119943927 + 2.5 NA Intergenic HAL1ME|LINE|L1 -71419 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 656-5 chr15 91538453 91538847 + 2.5 NA Intergenic Intergenic 75311 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 275-35 chr7 29364561 29364794 + 2.5 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -115035 NM_001293077 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 587-16 chr8 104360404 104360941 + 2.5 NA Intergenic Intergenic 20846 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 854-2 chr16 90010886 90011481 + 2.5 NA intron (NM_001288709, intron 1 of 3) intron (NM_001288709, intron 1 of 3) -1062 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 486.5-8 chr17 67452865 67453199 + 2.5 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -18457 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 557-12 chr2 101368708 101368959 + 2.5 NA intron (NM_153836, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 18670 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 646.5-6 chr18 8280583 8280980 + 2.5 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 86253 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 541.5-3 chr1 241135538 241135895 + 2.5 NA intron (NM_001282778, intron 2 of 16) LTR8A|LTR|ERV1 3444 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 430-32 chr6 45217956 45218313 + 2.5 NA intron (NM_001350325, intron 2 of 10) L1MD2|LINE|L1 -20364 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 515.5-4 chr16 88611392 88611680 + 2.5 NA exon (NM_144604, exon 8 of 18) exon (NM_144604, exon 8 of 18) -27036 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 682-3 chr10 82247834 82248167 + 2.5 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -15080 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 670-2 chr10 33426922 33427384 + 2.5 NA Intergenic Intergenic -92248 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 247.5-36 chr8 129208957 129209111 + 2.5 NA Intergenic Intergenic 32206 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 455.5-21 chr6 134527406 134527764 + 2.5 NA intron (NR_125856, intron 2 of 2) intron (NR_125856, intron 2 of 2) 12420 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 550.5-4 chr10 125324064 125324536 + 2.5 NA Intergenic L2a|LINE|L2 -163270 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 611-4 chr15 55434752 55435110 + 2.5 NA non-coding (NR_037923, exon 7 of 16) non-coding (NR_037923, exon 7 of 16) -26421 NM_001204451 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 437.5-7 chr20 55595162 55595398 + 2.5 NA Intergenic Intergenic -168083 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 488.5-10 chr5 117145697 117145998 + 2.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -269665 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 330.5-11 chr11 57801472 57801832 + 2.5 NA intron (NM_001331, intron 6 of 18) intron (NM_001331, intron 6 of 18) 39850 NM_001085465 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 288.5-19 chr17 9170106 9170345 + 2.5 NA TTS (NR_110828) TTS (NR_110828) 8893 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 393.5 chr1 62830596 62830764 + 2.5 NA intron (NM_178221, intron 7 of 10) intron (NM_178221, intron 7 of 10) 46548 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 192-17 chr3 35014231 35014334 + 2.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 379741 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 390.5-15 chr2 234611093 234611277 + 2.5 NA Intergenic L1MC3|LINE|L1 -71483 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 560.5-10 chr2 187300851 187301158 + 2.5 NA Intergenic Intergenic 147248 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 399.5-2 chr10 39389797 39390050 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 693327 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 438-14 chr2 8204913 8205206 + 2.5 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 123360 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 642-6 chr2 70390072 70390561 + 2.5 NA Intergenic Intergenic -88249 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 492.5-16 chr8 126368345 126368709 + 2.5 NA Intergenic Intergenic 43032 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 552-26 chr9 69255309 69255614 + 2.5 NA TTS (NM_001170415) TTS (NM_001170415) 50306 NM_001369875 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 664.5-13 chr6 53438567 53438862 + 2.5 NA Intergenic AluJb|SINE|Alu -89535 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 339.5-13 chr17 60451867 60452081 + 2.5 NA exon (NM_001282476, exon 11 of 12) exon (NM_001282476, exon 11 of 12) 29485 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 260-10 chr16 7443786 7443897 + 2.5 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 110996 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 271.5-17 chr16 56239600 56239795 + 2.5 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -5823 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 757-3 chr2 139402356 139402961 + 2.5 NA Intergenic Intergenic 505334 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 290-36 chr9 73980326 73980454 + 2.5 NA Intergenic L1MEd|LINE|L1 -391141 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 372-28 chr3 27379856 27380255 + 2.5 NA intron (NM_001321103, intron 24 of 25) AluSg|SINE|Alu -10595 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 675-2 chr15 26769812 26770259 + 2.5 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 3031 NM_000814 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 397.5-28 chr5 149419729 149419904 + 2.5 NA intron (NR_105060, intron 1 of 4) intron (NR_105060, intron 1 of 4) -9102 NR_029684 406935 NR_029684 ENSG00000284182 MIR143 MIRN143|mir-143 microRNA 143 ncRNA 697-3 chr16 48687266 48687666 + 2.5 NA Intergenic Intergenic -77286 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 602.5-3 chr10 95618322 95618624 + 2.5 NA intron (NM_001323414, intron 12 of 17) AluSc|SINE|Alu 38238 NM_001323413 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 553.5-2 chr11 45425993 45426511 + 2.5 NA Intergenic MIR|SINE|MIR 54855 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 600 chr1 45425979 45426393 + 2.5 NA intron (NM_001320800, intron 1 of 9) L1MA3|LINE|L1 64977 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 352.5-33 chr9 36353894 36354170 + 2.5 NA intron (NM_194328, intron 6 of 11) L1MB7|LINE|L1 46237 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 392.5-10 chr14 60102326 60102621 + 2.5 NA intron (NM_022495, intron 1 of 9) intron (NM_022495, intron 1 of 9) 10550 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 219-8 chr12 21309791 21309940 + 2.5 NA intron (NM_021094, intron 3 of 13) HAL1|LINE|L1 25052 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 246.5-37 chr7 4728059 4728263 + 2.5 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 45866 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 379.5-8 chr12 30322480 30322729 + 2.5 NA Intergenic Intergenic 354640 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 357-6 chr10 99501588 99501888 + 2.5 NA Intergenic L1ME4b|LINE|L1 29439 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 363.5-11 chr16 11664194 11664387 + 2.5 NA Intergenic AluSq2|SINE|Alu -4165 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 303.5-29 chr8 110361967 110362103 + 2.5 NA Intergenic MLT2B3|LTR|ERVL -386264 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 605-7 chr5 22441377 22441656 + 2.5 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -227666 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 689-8 chr2 84533047 84533362 + 2.5 NA intron (NM_001370, intron 4 of 76) Charlie25|DNA|hAT-Charlie 16749 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 520-21 chr8 140433985 140434558 + 2.5 NA intron (NM_001160372, intron 4 of 22) intron (NM_001160372, intron 4 of 22) 23473 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 662.5-3 chr11 5393639 5394091 + 2.5 NA intron (NM_001005567, intron 1 of 4) MIRb|SINE|MIR 4488 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 624.5-6 chr17 58862477 58862867 + 2.5 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 106803 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 281 chr1 19507182 19507335 + 2.5 NA Intergenic MIRb|SINE|MIR -21719 NM_001206540 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 554-25 chr7 109406782 109407201 + 2.5 NA Intergenic Intergenic -522404 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 211.5-39 chr9 111512893 111513051 + 2.5 NA Intergenic Intergenic -12207 NM_133464 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 305.5-24 chr4 36005836 36006080 + 2.5 NA non-coding (NR_146893, exon 37 of 37) non-coding (NR_146893, exon 37 of 37) 237981 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 609.5-4 chr4 32050652 32051177 + 2.5 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -28492 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 769-2 chr16 86766763 86767414 + 2.5 NA Intergenic L1PA16|LINE|L1 44997 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 550.5-16 chrX 80251326 80251673 + 2.5 NA intron (NR_110646, intron 5 of 5) intron (NR_110646, intron 5 of 5) 83819 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 382.5-7 chr15 57236410 57236632 + 2.5 NA intron (NM_207038, intron 12 of 19) intron (NM_207038, intron 12 of 19) 17091 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 342.5-37 chr9 77453382 77453612 + 2.5 NA intron (NR_121184, intron 1 of 4) intron (NR_121184, intron 1 of 4) 5848 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 783.5-2 chr12 23893795 23894236 + 2.5 NA intron (NM_001330785, intron 2 of 14) MIR|SINE|MIR 55655 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 297-5 chr10 67022252 67022392 + 2.5 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 10056 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 298-15 chr3 2147918 2148144 + 2.5 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -3790 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 440-9 chr14 63873224 63873486 + 2.5 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 20351 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 492-29 chr8 18906967 18907267 + 2.5 NA intron (NM_015310, intron 2 of 15) Tigger3b|DNA|TcMar-Tigger -20060 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 499.5-7 chr2 4055383 4055695 + 2.5 NA Intergenic Intergenic 81378 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 610-6 chr16 24991027 24991356 + 2.5 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 24178 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 293-20 chr3 184348972 184349156 + 2.5 NA intron (NM_001171088, intron 21 of 22) intron (NM_001171088, intron 21 of 22) 10231 NM_001366133 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 562-5 chr2 97887599 97887996 + 2.5 NA intron (NM_015348, intron 4 of 40) intron (NM_015348, intron 4 of 40) 108151 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 580-12 chr22 30458402 30458818 + 2.5 NA TTS (NM_001257378) TTS (NM_001257378) 13437 NM_001257382 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 429.5-6 chr12 71872601 71872829 + 2.5 NA intron (NR_027449, intron 2 of 15) intron (NR_027449, intron 2 of 15) -21732 NR_024072 729633 Hs.716256 NR_024072 MRS2P2 - MRS2 pseudogene 2 pseudo 420-11 chr15 100506967 100507222 + 2.5 NA intron (NM_001290341, intron 3 of 13) intron (NM_001290341, intron 3 of 13) 37192 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 311.5-40 chr7 17202435 17202648 + 2.5 NA Intergenic L1M3|LINE|L1 -96111 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 367-18 chr2 96650967 96651168 + 2.5 NA intron (NM_001293083, intron 6 of 52) L2a|LINE|L2 8303 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 495.5-6 chr14 59328851 59329199 + 2.5 NA intron (NM_001270520, intron 12 of 24) intron (NM_001270520, intron 12 of 24) 65584 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 365.5-25 chrX 68443829 68444087 + 2.5 NA Intergenic AluJb|SINE|Alu -10463 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 329.5-15 chr22 47872910 47873103 + 2.5 NA Intergenic Intergenic 241332 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 363.5-8 chr12 66090984 66091238 + 2.5 NA Intergenic MIR|SINE|MIR 39639 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 321.5-3 chr1 117801629 117801801 + 2.5 NA Intergenic L4_B_Mam|LINE|RTE-X 127906 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 349-36 chr8 74465149 74465305 + 2.5 NA intron (NM_001362931, intron 5 of 5) AluSz|SINE|Alu -83316 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 404.5-4 chr10 57044302 57044565 + 2.5 NA Intergenic Intergenic 260126 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 236.5-30 chr5 30331443 30331623 + 2.5 NA Intergenic Intergenic 450973 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 481-7 chr18 7965998 7966516 + 2.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 398941 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 461-13 chr2 162685392 162685777 + 2.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -83352 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 393-40 chr9 83593565 83593801 + 2.5 NA Intergenic Intergenic -29366 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 672.5 chr1 115080090 115080452 + 2.5 NA intron (NM_005725, intron 1 of 7) intron (NM_005725, intron 1 of 7) 9229 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 534-12 chr17 5616635 5616901 + 2.5 NA Intergenic Intergenic -32259 NM_033006 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 499-24 chr8 74794137 74794453 + 2.5 NA Intergenic L1ME4a|LINE|L1 -30239 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 289-3 chr1 157515997 157516230 + 2.5 NA intron (NM_001195388, intron 15 of 16) intron (NM_001195388, intron 15 of 16) 36402 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 496.5-2 chr1 194966066 194966325 + 2.5 NA Intergenic MER74B|LTR|ERVL 1122520 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 230-2 chr1 152374248 152374357 + 2.5 NA Intergenic Intergenic -14296 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 284.5-28 chr4 54489997 54490119 + 2.5 NA Intergenic Intergenic 117073 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 240-13 chr12 57772068 57772210 + 2.5 NA promoter-TSS (NM_023033) promoter-TSS (NM_023033) -34 NM_005371 4234 Hs.42957 NM_005371 ENSG00000037897 METTL1 C12orf1|TRM8|TRMT8|YDL201w methyltransferase like 1 protein-coding 279-25 chr4 30568208 30568327 + 2.5 NA Intergenic Intergenic -152102 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 327-7 chr11 5405408 5405538 + 2.5 NA intron (NM_001005567, intron 1 of 4) L2a|LINE|L2 3076 NM_001348224 79470 NM_001348224 OR51J1 HOR5'Beta8|OR51J1P|OR51J2 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) protein-coding 364.5-22 chr5 94703753 94703998 + 2.5 NA Intergenic Intergenic 85206 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 459.5 chr1 8681876 8682220 + 2.5 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 135592 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 451-27 chr8 126174036 126174317 + 2.5 NA Intergenic Intergenic -151319 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 315-6 chr10 63152275 63152480 + 2.5 NA intron (NM_001282405, intron 2 of 2) intron (NM_001282405, intron 2 of 2) 19049 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 295.5-24 chr5 55483259 55483460 + 2.5 NA intron (NM_003711, intron 1 of 5) intron (NM_003711, intron 1 of 5) 25567 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 385.5-3 chr1 189029947 189030294 + 2.5 NA Intergenic Intergenic 1445890 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 243.5-28 chr5 76637367 76637589 + 2.5 NA intron (NM_001285462, intron 5 of 23) intron (NM_001285462, intron 5 of 23) -14075 NM_001256566 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 244.5-19 chr2 27704768 27704915 + 2.5 NA TTS (NR_135200) TTS (NR_135200) 10891 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 335-54 chr9 2390473 2390681 + 2.5 NA Intergenic Intergenic -231210 NM_001322226 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 266-20 chr19 28365813 28365938 + 2.5 NA Intergenic MIR|SINE|MIR -240813 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 557.5-11 chr2 214923728 214924133 + 2.5 NA intron (NR_110292, intron 2 of 3) L1MA3|LINE|L1 76983 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 340-13 chr14 70856134 70856345 + 2.5 NA Intergenic MER87|LTR|ERV1 -46726 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 387-40 chr8 122955287 122955525 + 2.5 NA intron (NM_001362797, intron 4 of 4) intron (NM_001362797, intron 4 of 4) 70366 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 383.5-9 chr14 50723260 50723658 + 2.5 NA 3' UTR (NM_020921, exon 31 of 31) 3' UTR (NM_020921, exon 31 of 31) -55153 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 374-38 chr8 71471967 71472211 + 2.5 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 75615 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 412.5-19 chr22 35113845 35114065 + 2.5 NA Intergenic Intergenic 47797 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 627.5-12 chr7 100588230 100588508 + 2.5 NA intron (NM_033506, intron 1 of 9) intron (NM_033506, intron 1 of 9) -1244 NM_001163499 26261 Hs.283764 NM_012172 ENSG00000106336 FBXO24 FBX24 F-box protein 24 protein-coding 351.5-18 chr4 36509134 36509447 + 2.5 NA intron (NR_149124, intron 3 of 4) MER6A|DNA|TcMar-Tigger -82862 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 375.5-8 chr14 58089957 58090133 + 2.5 NA intron (NM_001001872, intron 5 of 7) L3b|LINE|CR1 62168 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 275.5-35 chr8 107176248 107176406 + 2.5 NA Intergenic L1MB8|LINE|L1 160188 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 723-4 chr16 78893016 78893603 + 2.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 707428 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 613.5-8 chr3 109609840 109610119 + 2.5 NA Intergenic Intergenic 7151 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 248.5-6 chr11 111799299 111799484 + 2.5 NA intron (NM_001352421, intron 14 of 15) AluSc|SINE|Alu -33002 NM_001177563 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 472-19 chr5 129742885 129743117 + 2.5 NA Intergenic L1MA5A|LINE|L1 -5093 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 287-8 chr11 76065782 76065978 + 2.5 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 140622 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 366.5-18 chr2 58980870 58981128 + 2.5 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -236709 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 479-17 chr3 25866803 25867122 + 2.5 NA intron (NR_034055, intron 4 of 7) intron (NR_034055, intron 4 of 7) 6733 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 391.5-39 chr8 102410583 102410774 + 2.5 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 2011 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 565-2 chr12 4074702 4075056 + 2.5 NA Intergenic L1MD2|LINE|L1 -198883 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 413 chr1 101739463 101739797 + 2.5 NA Intergenic Intergenic 107450 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 242.5-5 chr14 71270221 71270381 + 2.5 NA Intergenic THE1C|LTR|ERVL-MaLR -50175 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 526-14 chr4 20472224 20472633 + 2.5 NA intron (NM_001289135, intron 5 of 35) intron (NM_001289135, intron 5 of 35) -55847 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 407.5-5 chr13 108188187 108188424 + 2.5 NA Intergenic Intergenic 26477 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 713.5-3 chr2 97865490 97865964 + 2.5 NA intron (NM_015348, intron 4 of 40) L1M4b|LINE|L1 130221 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 731.5 chr1 214553400 214554126 + 2.5 NA Intergenic MIR3|SINE|MIR -2161 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 590.5-3 chr1 107687838 107688266 + 2.5 NA intron (NM_006113, intron 18 of 26) intron (NM_006113, intron 18 of 26) 447 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 302.5-25 chr20 60445597 60445785 + 2.5 NA Intergenic Intergenic 27285 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 343.5-13 chr14 54658973 54659143 + 2.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 91446 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 207.5-3 chr1 188845768 188845852 + 2.5 NA Intergenic Intergenic 1402182 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 270.5-4 chr10 23308605 23308777 + 2.5 NA intron (NM_001351306, intron 4 of 5) MIR|SINE|MIR -35266 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 446-8 chr11 24642576 24642814 + 2.5 NA intron (NM_001252008, intron 1 of 11) MER31B|LTR|ERV1 145642 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 420-19 chr2 185289560 185289820 + 2.5 NA Intergenic L1ME1|LINE|L1 -122618 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 451-19 chr6 54946489 54946825 + 2.5 NA Intergenic Intergenic 99886 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 340-16 chr15 100524233 100524406 + 2.5 NA intron (NM_001290341, intron 2 of 13) MER112|DNA|hAT-Charlie 19967 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 383.5-21 chr7 2157372 2157635 + 2.5 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) -68451 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 348.5-18 chr3 195350093 195350277 + 2.5 NA intron (NM_012287, intron 4 of 22) L1ME1|LINE|L1 -79026 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 368.5-24 chr5 41557652 41557935 + 2.5 NA Intergenic L1MA7|LINE|L1 -47192 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 301-13 chr12 17832405 17832648 + 2.5 NA Intergenic L1MCa|LINE|L1 159227 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 463-7 chr11 120938662 120939087 + 2.5 NA intron (NM_001282470, intron 12 of 19) MER5A|DNA|hAT-Charlie 19165 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 449-30 chr6 149204017 149204300 + 2.5 NA Intergenic L1MC5a|LINE|L1 -13766 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 498-20 chr3 13665190 13665427 + 2.5 NA intron (NR_027103, intron 1 of 5) MIRc|SINE|MIR 14587 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 238-33 chr7 25418469 25418578 + 2.5 NA Intergenic Intergenic -190037 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 526.5-11 chr18 38992855 38993160 + 2.5 NA Intergenic Intergenic 629168 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 290.5-20 chr4 89874591 89874772 + 2.5 NA Intergenic Intergenic -4830 NM_001371403 350.5-11 chr5 171303459 171303837 + 2.5 NA Intergenic Intergenic -5600 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 296-14 chr17 71108037 71108170 + 2.5 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 94076 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 467.5-10 chr21 27712061 27712428 + 2.5 NA Intergenic Intergenic -10135 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 399.5-16 chr3 43858670 43858890 + 2.5 NA Intergenic Intergenic -167186 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 276-12 chr11 91911919 91912132 + 2.5 NA Intergenic Intergenic -313009 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 966 chr15 63552734 63553254 + 2.5 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) -44393 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 998.5-2 chr18 45424246 45424739 + 2.5 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 82544 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 179-12 chr2 238793711 238793840 + 2.5 NA Intergenic L1MB3|LINE|L1 54132 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 403.5-5 chr12 20703501 20703710 + 2.5 NA intron (NM_017435, intron 3 of 14) L1M4|LINE|L1 8140 NM_001145944 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 646.5-9 chr2 112013191 112013482 + 2.5 NA intron (NM_006343, intron 15 of 18) intron (NM_006343, intron 15 of 18) -41933 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 379-18 chr18 74070149 74070383 + 2.5 NA Intergenic L1MC4a|LINE|L1 77568 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 794.5-3 chr2 96794675 96795135 + 2.5 NA intron (NM_020184, intron 1 of 6) Tigger4a|DNA|TcMar-Tigger -3373 NR_036074 100422928 NR_036074 ENSG00000264157 MIR3127 mir-3127 microRNA 3127 ncRNA 227-6 chr11 16030333 16030502 + 2.5 NA intron (NM_033326, intron 12 of 15) intron (NM_033326, intron 12 of 15) -60796 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 418-20 chr5 27127337 27127922 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie -89043 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 401.5-4 chr1 98577234 98577468 + 2.5 NA Intergenic L1MD3|LINE|L1 -84370 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 544-2 chr1 187144719 187145015 + 2.5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 52025 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 539 chr1 18526770 18527132 + 2.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 46021 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 418.5-6 chr11 8534194 8534434 + 2.5 NA intron (NM_030906, intron 1 of 13) Charlie4z|DNA|hAT-Charlie 59662 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 392-12 chr14 37668043 37668307 + 2.5 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 72546 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 251-21 chr22 31589063 31589244 + 2.5 NA intron (NM_001007467, intron 14 of 32) intron (NM_001007467, intron 14 of 32) 32378 NR_106959 102465666 NR_106959 ENSG00000284082 MIR7109 hsa-mir-7109 microRNA 7109 ncRNA 619-11 chr4 36416860 36417266 + 2.5 NA Intergenic MER61D|LTR|ERV1 9365 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 610.5-12 chr5 61595145 61595482 + 2.5 NA Intergenic Intergenic -42447 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 560-6 chr18 2035838 2036366 + 2.5 NA Intergenic Intergenic 535403 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 550-9 chr17 59642635 59642970 + 2.5 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 22907 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 279.5-15 chr5 81532899 81533055 + 2.5 NA intron (NM_012446, intron 4 of 16) L1MEc|LINE|L1 -138843 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 481-11 chr2 83336813 83337215 + 2.5 NA Intergenic Intergenic -185800 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 346.5-7 chr14 65737265 65737502 + 2.5 NA intron (NM_004480, intron 9 of 9) intron (NM_004480, intron 9 of 9) 266281 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 516-11 chr14 81944355 81944771 + 2.5 NA Intergenic Intergenic -201425 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 831.5-2 chr1 110871963 110872418 + 2.5 NA promoter-TSS (NM_001320638) promoter-TSS (NM_001320638) -910 NM_001320638 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 514-8 chr18 42017495 42017825 + 2.5 NA intron (NM_001308020, intron 11 of 23) L1MEd|LINE|L1 62426 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 188.5-15 chr3 112195882 112195957 + 2.5 NA intron (NM_001320531, intron 19 of 27).2 L1ME3A|LINE|L1 62496 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 196.5-31 chr6 74945547 74945646 + 2.5 NA Intergenic Intergenic 183186 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 416-26 chr8 91469447 91469946 + 2.5 NA Intergenic L3|LINE|CR1 220377 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 467-11 chr17 79909715 79909996 + 2.5 NA Intergenic L1ME3G|LINE|L1 -9502 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LINC01978 - long intergenic non-protein coding RNA 1978 ncRNA 719-3 chr8 78745497 78745948 + 2.5 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) -21348 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 565.5-9 chr22 46248847 46249181 + 2.5 NA intron (NM_207327, intron 1 of 3) AluY|SINE|Alu 1279 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 509-8 chr18 41926279 41926937 + 2.5 NA Intergenic L1MB7|LINE|L1 -28626 NM_002647 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 398-33 chr7 15727731 15728068 + 2.5 NA Intergenic Intergenic 39521 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 583.5-14 chr6 38132053 38132515 + 2.5 NA intron (NM_021943, intron 5 of 5) AluJr|SINE|Alu 312557 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 361.5-11 chr17 58188724 58188927 + 2.5 NA Intergenic MER97b|DNA|hAT-Tip100 -3901 NM_000502 8288 Hs.279259 NM_000502 ENSG00000121053 EPX EPO|EPP|EPX-PEN|EPXD eosinophil peroxidase protein-coding 661-6 chr2 122319925 122320291 + 2.5 NA Intergenic Intergenic 564457 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 318-30 chr4 72842271 72842446 + 2.5 NA Intergenic L1M4|LINE|L1 227358 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 264.5-37 chr8 69293259 69293381 + 2.5 NA Intergenic Intergenic 154924 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 425-30 chr22 24929271 24929467 + 2.5 NA Intergenic Intergenic 17326 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 300.5-29 chr3 25750264 25750432 + 2.5 NA intron (NM_018297, intron 4 of 11) THE1D|LTR|ERVL-MaLR 33095 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 588.5-10 chr2 184417806 184418264 + 2.5 NA Intergenic Intergenic 39060 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 321.5-29 chr6 87533269 87533485 + 2.5 NA intron (NR_146759, intron 5 of 16) intron (NR_146759, intron 5 of 16) 56610 NM_020320 57038 Hs.485910 NM_020320 ENSG00000146282 RARS2 ArgRS|DALRD2|PCH6|PRO1992|RARSL arginyl-tRNA synthetase 2, mitochondrial protein-coding 770-2 chr10 52255168 52255740 + 2.5 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 58674 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 257-23 chr2 122666483 122666685 + 2.5 NA Intergenic Intergenic 406897 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 549.5-7 chr2 178008189 178008583 + 2.5 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) 64391 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 519.5-18 chr8 76487641 76487951 + 2.5 NA intron (NR_105006, intron 3 of 5) ERV3-16A3_I-int|LTR|ERVL 81142 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 513 chr1 11632838 11633090 + 2.5 NA Intergenic Intergenic -21443 NM_001304791 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 270-19 chr3 135088428 135088550 + 2.5 NA intron (NM_004441, intron 3 of 15) MLT1J|LTR|ERVL-MaLR 293229 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 459-32 chr7 131585819 131586077 + 2.5 NA Intergenic AluJb|SINE|Alu -29320 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 838.5-2 chr14 76682370 76682722 + 2.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -78922 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 509-3 chr11 63123433 63123717 + 2.5 NA intron (NM_173586, intron 2 of 3) L2|LINE|L2 20646 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 283.5-29 chr4 112247931 112248145 + 2.5 NA intron (NM_018569, intron 1 of 9) L1MC5a|LINE|L1 16251 NM_018569 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 390-12 chr18 40239481 40239672 + 2.5 NA Intergenic Intergenic 173290 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 230-16 chr19 50602010 50602152 + 2.5 NA Intergenic Intergenic -2882 NR_004384 100126781 Hs.707968 NR_004384 SNAR-F - small NF90 (ILF3) associated RNA F snRNA 534-18 chr20 34891519 34891779 + 2.5 NA intron (NM_001076552, intron 2 of 18) intron (NM_001076552, intron 2 of 18) 15037 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 413.5-8 chr16 66733161 66733398 + 2.5 NA intron (NM_006141, intron 6 of 12) intron (NM_006141, intron 6 of 12) 18330 NM_006141 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 593-6 chr19 32358663 32359026 + 2.5 NA intron (NM_001136156, intron 4 of 6) MIRc|SINE|MIR 13234 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 561.5-7 chr2 37275144 37275532 + 2.5 NA intron (NM_005813, intron 9 of 17) intron (NM_005813, intron 9 of 17) 41746 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 514-12 chr21 20256863 20257181 + 2.5 NA non-coding (NR_151724, exon 2 of 2) non-coding (NR_151724, exon 2 of 2) 1663 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 331.5-27 chr8 124879322 124879553 + 2.5 NA Intergenic Intergenic -57379 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 573-12 chr3 76467211 76467626 + 2.5 NA Intergenic Intergenic -572681 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 499.5-16 chr4 30953510 30953740 + 2.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -217519 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 515-16 chr4 108902690 108903143 + 2.5 NA intron (NM_198721, intron 12 of 36) intron (NM_198721, intron 12 of 36) -139863 NM_001146627 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 475.5-12 chr22 21864752 21865027 + 2.5 NA intron (NM_002745, intron 1 of 8) intron (NM_002745, intron 1 of 8) 2791 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 351.5 chr10 82410481 82410669 + 2.5 NA intron (NR_163253, intron 3 of 10) L1MB7|LINE|L1 -177655 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 324-40 chr8 85568009 85568171 + 2.5 NA Intergenic Intergenic 87586 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 273.5-19 chr3 107290672 107290856 + 2.5 NA intron (NR_028302, intron 1 of 3) LTR46|LTR|ERV1 50072 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 462-24 chr22 19833972 19834220 + 2.5 NA intron (NM_053004, intron 2 of 7) L1MEf|LINE|L1 20778 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 480.5-3 chr15 100448621 100449004 + 2.5 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 75873 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 991.5-2 chr15 60748092 60748522 + 2.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 66738 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 452-17 chr20 53094755 53094960 + 2.5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -90426 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 619.5-6 chr3 19426919 19427322 + 2.5 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -112189 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 350-4 chr10 112073567 112073787 + 2.5 NA Intergenic MIRb|SINE|MIR 110088 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 418-23 chr6 91879996 91880246 + 2.5 NA Intergenic Intergenic -189693 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 364-37 chr8 74651635 74651844 + 2.5 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) 51873 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 605.5-4 chr2 132432202 132432634 + 2.5 NA intron (NM_001508, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR -1293 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 421-16 chr2 53925679 53925893 + 2.5 NA intron (NM_014614, intron 13 of 46) intron (NM_014614, intron 13 of 46) 45207 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 427-8 chr1 198736459 198736723 + 2.5 NA intron (NM_002838, intron 23 of 32) L1MA3|LINE|L1 97551 NM_001267798 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase receptor type C protein-coding 561-4 chr10 27674312 27674671 + 2.5 NA 3' UTR (NM_173576, exon 7 of 7) 3' UTR (NM_173576, exon 7 of 7) -70124 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 507.5-8 chr12 39683463 39683866 + 2.5 NA intron (NM_001031748, intron 9 of 12) MamRep605|LTR?|LTR? 57481 NR_135051 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 513-33 chr8 109143141 109143381 + 2.5 NA Intergenic L1ME3G|LINE|L1 56633 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 464-20 chr6 4817860 4818045 + 2.5 NA intron (NM_001368127, intron 1 of 5) intron (NM_001368127, intron 1 of 5) -18146 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 351-8 chr13 41235432 41235637 + 2.5 NA non-coding (NR_120423, exon 4 of 4) non-coding (NR_120423, exon 4 of 4) 28042 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 642 chr1 152875035 152875536 + 2.5 NA Intergenic L2a|LINE|L2 -3037 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 537-18 chr6 49360064 49360432 + 2.5 NA Intergenic Intergenic 103005 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 264.5-21 chr2 71677297 71677511 + 2.5 NA intron (NM_001130985, intron 51 of 54) intron (NM_001130985, intron 51 of 54) 210705 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 329-9 chr15 23866325 23866520 + 2.5 NA Intergenic Intergenic -108725 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 366.5-23 chr20 12007839 12008041 + 2.5 NA Intergenic L1MEi|LINE|L1 90047 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 635-10 chr4 117747962 117748512 + 2.5 NA Intergenic MIRc|SINE|MIR -86164 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 501.5-29 chr9 91280388 91280794 + 2.5 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 81333 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 613.5-6 chr2 164168991 164169347 + 2.5 NA Intergenic L2a|LINE|L2 399326 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 309-18 chr2 1921221 1921377 + 2.5 NA intron (NM_015025, intron 10 of 24) intron (NM_015025, intron 10 of 24) -176784 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 244-29 chr8 138563961 138564108 + 2.5 NA Intergenic LTR53B|LTR|ERVL -66304 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 424.5-12 chr20 52775221 52775437 + 2.5 NA Intergenic MER20|DNA|hAT-Charlie 154491 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 729-10 chr8 26641545 26642084 + 2.5 NA intron (NM_001244604, intron 8 of 13) intron (NM_001244604, intron 8 of 13) 63409 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 645-4 chr10 76267138 76267534 + 2.5 NA intron (NM_001305581, intron 5 of 6) L1MB4|LINE|L1 484575 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 372.5-14 chr20 49090057 49090287 + 2.5 NA intron (NM_001362762, intron 19 of 24) intron (NM_001362762, intron 19 of 24) 43860 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 350-18 chr20 33183390 33183595 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -10113 NR_026760 317716 Hs.434194 NM_173859 ENSG00000183566 BPIFA4P BASE BPI fold containing family A member 4, pseudogene pseudo 357-24 chr3 44232241 44232396 + 2.5 NA Intergenic Intergenic -9568 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 300-8 chr17 28740335 28740469 + 2.5 NA intron (NM_178170, intron 10 of 14) intron (NM_178170, intron 10 of 14) -3609 NM_004295 9618 Hs.8375 NM_004295 ENSG00000076604 TRAF4 CART1|MLN62|RNF83 TNF receptor associated factor 4 protein-coding 555.5-3 chr17 53686206 53686507 + 2.5 NA Intergenic L1M3a|LINE|L1 -136571 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 490-33 chr8 133214398 133214763 + 2.5 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 23541 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 443-22 chr2 233055376 233055635 + 2.5 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -4837 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 563-5 chr14 78241028 78241398 + 2.5 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 70840 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 527-9 chr13 76679844 76680117 + 2.5 NA Intergenic Intergenic 206425 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 425-37 chr7 106747595 106747830 + 2.5 NA Intergenic AluJr4|SINE|Alu -86554 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 690.5-2 chr11 6551303 6551729 + 2.5 NA intron (NM_144666, intron 24 of 42) L1ME2|LINE|L1 52100 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 365.5-21 chr7 80555105 80555332 + 2.5 NA Intergenic L1PB3|LINE|L1 -43154 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 537.5-4 chr12 104507822 104508288 + 2.5 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) 51107 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 419.5-9 chr16 86890705 86890997 + 2.5 NA Intergenic MIR|SINE|MIR -166933 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 410.5-19 chr7 21710459 21710871 + 2.5 NA exon (NM_001277115, exon 41 of 82) exon (NM_001277115, exon 41 of 82) 167626 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 167.5-17 chr4 43165628 43165737 + 2.5 NA Intergenic Intergenic 272416 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 478-17 chr2 128757911 128758187 + 2.5 NA Intergenic L1MB7|LINE|L1 -106551 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 752-4 chr2 139914030 139914589 + 2.5 NA Intergenic L1M5|LINE|L1 672376 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 335.5-23 chr2 239957887 239958054 + 2.5 NA non-coding (NR_136156, exon 8 of 8) non-coding (NR_136156, exon 8 of 8) -14876 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 489-16 chr14 105000195 105000463 + 2.5 NA Intergenic AluSx1|SINE|Alu 14050 NM_001364170 122616 Hs.27183 NM_174891 ENSG00000140104 CLBA1 C14orf79 clathrin binding box of aftiphilin containing 1 protein-coding 280.5-30 chr5 120476324 120476473 + 2.5 NA intron (NM_001308087, intron 1 of 1) intron (NM_001308087, intron 1 of 1) 10767 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 399.5-24 chr6 69625350 69625660 + 2.5 NA Intergenic LTR60B|LTR|ERV1 170961 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 505-11 chr18 8506345 8506733 + 2.5 NA Intergenic Intergenic -102906 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 399-19 chr2 102775915 102776186 + 2.5 NA intron (NM_001321346, intron 3 of 3) L1MC2|LINE|L1 14019 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 389.5-14 chr18 5635055 5635357 + 2.5 NA Intergenic L1MC4|LINE|L1 -6215 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 516.5-10 chr3 160556466 160556756 + 2.5 NA intron (NM_002268, intron 1 of 16) Tigger4a|DNA|TcMar-Tigger 8960 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 610.5-10 chr3 143120307 143120649 + 2.5 NA 5' UTR (NM_004267, exon 1 of 2) 5' UTR (NM_004267, exon 1 of 2) 707 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 447-3 chr1 169382147 169382356 + 2.5 NA exon (NM_001320973, exon 6 of 7) exon (NM_001320973, exon 6 of 7) 14056 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 462-23 chr20 20007640 20007849 + 2.5 NA Intergenic Intergenic -9546 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 457.5-20 chr4 62916653 62916969 + 2.5 NA Intergenic Intergenic -755046 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 805-3 chr5 12060071 12060578 + 2.5 NA Intergenic L2a|LINE|L2 -155878 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 291.5-24 chr8 81564433 81564795 + 2.5 NA Intergenic L1MA3|LINE|L1 -33224 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 262-30 chr6 140781754 140781947 + 2.5 NA Intergenic Intergenic 98036 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 551.5-9 chr6 118125788 118126171 + 2.5 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 40076 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 402.5 chr1 62800838 62801106 + 2.5 NA intron (NM_032852, intron 1 of 10) L2c|LINE|L2 16840 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 427-25 chr5 41690767 41691079 + 2.5 NA Intergenic L1PB4|LINE|L1 152734 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 358.5-4 chr10 43003007 43003171 + 2.5 NA Intergenic L1MC3|LINE|L1 5526 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 468-12 chr16 5464795 5465058 + 2.5 NA Intergenic Intergenic 151324 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 365-31 chr8 34837394 34837643 + 2.5 NA intron (NR_125746, intron 3 of 3) AluSq2|SINE|Alu 53597 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 539.5-16 chr3 70902863 70903161 + 2.5 NA Intergenic L1MD2|LINE|L1 161912 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 650.5-7 chr15 96899841 96900275 + 2.5 NA Intergenic Intergenic 116623 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 492.5-2 chr1 167842622 167842861 + 2.5 NA intron (NM_018417, intron 21 of 32) HAL1|LINE|L1 71393 NM_018417 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 593-13 chr4 48108256 48108611 + 2.5 NA intron (NM_003328, intron 5 of 14) MIRc|SINE|MIR 25817 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 174-19 chr3 61276305 61276414 + 2.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -24898 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 326-10 chr11 3986423 3986597 + 2.5 NA intron (NM_001277962, intron 2 of 12) intron (NM_001277962, intron 2 of 12) -108175 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 413.5-5 chr12 4133675 4133993 + 2.5 NA Intergenic Intergenic -139928 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 413-18 chr2 35990212 35990461 + 2.5 NA Intergenic Intergenic 365234 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 311.5-44 chr9 101783083 101783297 + 2.5 NA Intergenic Intergenic -44610 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 352.5 chr1 97157463 97157678 + 2.5 NA intron (NM_000110, intron 20 of 22) CR1_Mam|LINE|CR1 61647 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 686.5-6 chr5 112246274 112246746 + 2.5 NA intron (NM_001347887, intron 9 of 23) PRIMA4_LTR|LTR|ERV1 18227 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 391-5 chr11 100916725 100917013 + 2.5 NA intron (NM_001367945, intron 7 of 25) L1ME4a|LINE|L1 -17405 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 368.5-22 chr3 67857459 67857609 + 2.5 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -134058 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 376-9 chr15 73526502 73526725 + 2.5 NA intron (NM_001348772, intron 2 of 4) L1ME1|LINE|L1 42930 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 527-23 chr5 121551645 121552032 + 2.5 NA Intergenic L1MD1|LINE|L1 229288 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 378.5-29 chr7 52857228 52857451 + 2.5 NA Intergenic MIRb|SINE|MIR -178294 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 378.5-4 chr10 55908960 55909182 + 2.5 NA Intergenic Intergenic -281129 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 135.5-7 chr20 20553696 20553833 + 2.5 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 158880 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 498-27 chr8 137396195 137396407 + 2.5 NA Intergenic L1PA10|LINE|L1 17287 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 655-5 chr15 87114700 87115143 + 2.5 NA Intergenic LTR1C|LTR|ERV1 -126495 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 399-34 chr6 22976472 22976759 + 2.5 NA Intergenic L1ME3G|LINE|L1 -258691 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 748.5-3 chr4 78060625 78061164 + 2.5 NA intron (NM_001166133, intron 1 of 41) AluSz|SINE|Alu 3324 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 356-6 chr11 45886928 45887087 + 2.5 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 1356 NM_005456 9479 Hs.234249 NM_005456 ENSG00000121653 MAPK8IP1 IB1|JIP-1|JIP1|PRKM8IP mitogen-activated protein kinase 8 interacting protein 1 protein-coding 381.5-9 chr2 25824162 25824350 + 2.5 NA intron (NM_018263, intron 2 of 11) intron (NM_018263, intron 2 of 11) 6645 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 478-21 chr3 39810225 39810557 + 2.5 NA intron (NM_001284424, intron 1 of 15) intron (NM_001284424, intron 1 of 15) 731 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 685-9 chr5 59543073 59543433 + 2.5 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 43245 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 602.5-5 chr14 78637639 78638068 + 2.5 NA intron (NM_004796, intron 1 of 16) MIRb|SINE|MIR 234134 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 519-8 chr17 54904815 54905131 + 2.5 NA intron (NM_001321173, intron 2 of 9) intron (NM_001321173, intron 2 of 9) 4121 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 515.5-9 chr4 2861283 2861577 + 2.5 NA intron (NM_001354757, intron 2 of 16) intron (NM_001354757, intron 2 of 16) 17280 NM_001286645 118 Hs.183706 NM_001119 ENSG00000087274 ADD1 ADDA adducin 1 protein-coding 229.5-38 chr6 55659011 55659162 + 2.5 NA Intergenic L2|LINE|L2 -79872 NR_109867 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 348.5-17 chr3 167976885 167977093 + 2.5 NA Intergenic Intergenic 81041 NR_033843 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 458-5 chr10 32304021 32304416 + 2.5 NA intron (NM_001272004, intron 2 of 13) intron (NM_001272004, intron 2 of 13) 42940 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 637-10 chr5 35765718 35766250 + 2.5 NA intron (NM_024867, intron 26 of 36) L1ME3B|LINE|L1 -90907 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 330-35 chr5 61230112 61230297 + 2.5 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) 34725 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 655-3 chr12 2615584 2616117 + 2.5 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 56370 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 332-11 chr17 73957979 73958115 + 2.5 NA Intergenic Intergenic -129510 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 654-6 chr14 65040473 65041009 + 2.5 NA intron (NM_002028, intron 7 of 11) intron (NM_002028, intron 7 of 11) -3947 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 489-19 chr3 160779970 160780206 + 2.5 NA intron (NM_139245, intron 1 of 3) AluJr|SINE|Alu 23857 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 262-16 chr16 8381958 8382062 + 2.5 NA Intergenic Intergenic 207828 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 388-16 chr15 79299841 79300334 + 2.5 NA Intergenic Intergenic -10975 NR_125394 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 433.5-18 chr2 85055939 85056265 + 2.5 NA 3' UTR (NM_020122, exon 7 of 7) 3' UTR (NM_020122, exon 7 of 7) 11245 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 404-13 chr12 68557958 68558226 + 2.5 NA Intergenic Intergenic -52807 NM_015646 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 398.5-6 chr12 29542239 29542518 + 2.5 NA intron (NM_001367875, intron 12 of 19) intron (NM_001367875, intron 12 of 19) -42685 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 710-13 chr5 104538193 104538773 + 2.5 NA Intergenic HAL1|LINE|L1 -560991 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 407.5-18 chr5 78266421 78266649 + 2.5 NA intron (NM_003664, intron 2 of 26) Tigger8|DNA|TcMar-Tigger 28163 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 310.5-5 chr10 64912159 64912353 + 2.5 NA intron (NR_134456, intron 1 of 1) intron (NR_134456, intron 1 of 1) 12262 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 496-4 chr12 10149507 10149854 + 2.5 NA Intergenic L1PA16|LINE|L1 -19411 NM_197947 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 425-16 chr13 45400392 45400813 + 2.5 NA intron (NM_001286807, intron 7 of 9) AluJb|SINE|Alu -17560 NR_047031 100874259 Hs.658038 NR_047031 ENSG00000251015 SLC25A30-AS1 - SLC25A30 antisense RNA 1 ncRNA 647-15 chr5 114115222 114115740 + 2.5 NA Intergenic Intergenic -246589 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 230-27 chr4 80308174 80308361 + 2.5 NA Intergenic MIRb|SINE|MIR -27453 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 342-22 chr20 42997410 42997818 + 2.5 NA intron (NM_133170, intron 1 of 31) MLT1G1|LTR|ERVL-MaLR 28871 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 310-39 chr7 131728233 131728540 + 2.5 NA Intergenic LTR78B|LTR|ERV1 -171758 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 313-9 chr12 17186773 17187000 + 2.5 NA Intergenic L1ME2|LINE|L1 198139 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 627.5-2 chr11 50218750 50219270 + 2.5 NA Intergenic L1MC3|LINE|L1 79452 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 310-22 chr2 78392480 78392739 + 2.5 NA Intergenic L1MA4|LINE|L1 -101878 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 1118-2 chr2 229913640 229914361 + 2.5 NA intron (NM_001348325, intron 1 of 42) AluSx|SINE|Alu 7679 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 558-6 chr16 47761495 47761773 + 2.5 NA Intergenic L1MDa|LINE|L1 -96947 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 357.5-5 chr14 56171296 56171560 + 2.5 NA intron (NM_021255, intron 1 of 5) MSTD|LTR|ERVL-MaLR 53017 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 460.5-25 chr5 29662903 29663105 + 2.5 NA Intergenic Intergenic -217556 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 442.5-6 chr12 41451463 41451689 + 2.5 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 13837 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 554-8 chr12 1596719 1596980 + 2.5 NA Intergenic Intergenic -2268 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 507.5-4 chr1 199489713 199490215 + 2.5 NA Intergenic HAL1M8|LINE|L1 341366 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 218-31 chr7 26612504 26612616 + 2.5 NA Intergenic MIRb|SINE|MIR -25311 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 547-18 chr7 30474172 30474490 + 2.5 NA intron (NM_006092, intron 1 of 13) MIRb|SINE|MIR 4453 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 581.5-10 chr20 56147757 56148023 + 2.5 NA Intergenic Intergenic -100842 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 315-8 chr10 110868462 110868631 + 2.5 NA TTS (NR_026932) TTS (NR_026932) 2358 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 401-5 chr10 24435561 24435846 + 2.5 NA intron (NM_019590, intron 4 of 20) intron (NM_019590, intron 4 of 20) -13711 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 495-12 chr21 16242815 16243101 + 2.5 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 41810 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 414-33 chr5 100435547 100435782 + 2.5 NA Intergenic Intergenic -47410 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 259.5-33 chr4 101782088 101782268 + 2.5 NA Intergenic ERVL-B4-int|LTR|ERVL -8429 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 449-20 chr3 147290360 147290556 + 2.5 NA Intergenic Intergenic 101972 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 282.5-24 chr5 44186492 44186711 + 2.5 NA Intergenic LTR82A|LTR|ERVL -202131 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 313-24 chr3 188087388 188087592 + 2.5 NA Intergenic AluJb|SINE|Alu -66408 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 553.5-16 chr8 77767507 77767858 + 2.5 NA Intergenic Intergenic 316985 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 427.5-8 chr13 99150255 99150491 + 2.5 NA Intergenic Intergenic 50382 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 310-36 chr6 153012240 153012431 + 2.5 NA intron (NM_012419, intron 4 of 4) intron (NM_012419, intron 4 of 4) -9520 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 406.5-26 chr8 62674375 62674631 + 2.5 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -303358 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 413-14 chr15 96477997 96478367 + 2.5 NA Intergenic L1ME1|LINE|L1 144417 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 770.5 chr1 224329310 224329662 + 2.5 NA intron (NM_002533, intron 1 of 22) L2a|LINE|L2 686 NM_002533 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 287.5-5 chr11 11158905 11159104 + 2.5 NA Intergenic Intergenic 194246 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 367-26 chr5 11418968 11419236 + 2.5 NA intron (NM_001288715, intron 2 of 20) L1ME3Cz|LINE|L1 169815 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 557.5-9 chr2 111629277 111629646 + 2.5 NA Intergenic AluSz|SINE|Alu -134300 NR_136161 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 272.5-37 chr8 57399678 57399893 + 2.5 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 55998 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 423-23 chr22 25680227 25680431 + 2.5 NA intron (NM_001362778, intron 8 of 19) intron (NM_001362778, intron 8 of 19) -61859 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 442.5-15 chr2 123719478 123719974 + 2.5 NA Intergenic Intergenic 305448 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 530-2 chr1 109840417 109840678 + 2.5 NA Intergenic L1MB8|LINE|L1 -70302 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 484-4 chr1 39934463 39935022 + 2.5 NA Intergenic L2c|LINE|L2 -20370 NM_001287808 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 425-9 chr10 53262274 53262523 + 2.5 NA Intergenic Intergenic -490698 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 345-33 chr5 141571365 141571694 + 2.5 NA intron (NM_005219, intron 17 of 27) intron (NM_005219, intron 17 of 27) 13218 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 264.5-32 chr6 113647324 113647448 + 2.5 NA intron (NR_125844, intron 1 of 2) intron (NR_125844, intron 1 of 2) 2689 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 259.5-17 chr17 82795997 82796189 + 2.5 NA intron (NM_005993, intron 7 of 38) intron (NM_005993, intron 7 of 38) 43929 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 393.5-15 chr3 4404435 4404646 + 2.5 NA intron (NM_001164674, intron 6 of 7) AluSp|SINE|Alu 62729 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 408-10 chr11 111089617 111089840 + 2.5 NA Intergenic Intergenic 7590 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 391.5-6 chr12 2385251 2385601 + 2.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 115650 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 527-16 chr2 74575698 74576360 + 2.5 NA intron (NM_001321739, intron 6 of 10) intron (NM_001321739, intron 6 of 10) 21869 NM_001381 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 487-14 chr14 70123612 70124041 + 2.5 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -43609 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 260-3 chr10 52578367 52578590 + 2.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -107945 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 487.5-19 chr22 28273526 28273844 + 2.5 NA intron (NM_001145418, intron 5 of 22) L1MEg|LINE|L1 -186184 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 419-22 chr3 117181213 117181410 + 2.5 NA Intergenic (TTCTTCT)n|Simple_repeat|Simple_repeat 259880 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 740-2 chr11 99850671 99851002 + 2.5 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 294691 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 488-4 chr14 43048222 43048583 + 2.5 NA Intergenic MIRb|SINE|MIR 1441546 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 437.5-13 chr7 19892005 19892222 + 2.5 NA Intergenic L1M2|LINE|L1 -118496 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 465-32 chr7 144073102 144073463 + 2.5 NA promoter-TSS (NM_001004488) promoter-TSS (NM_001004488) -938 NM_001004488 392138 Hs.553787 NM_001004488 ENSG00000221933 OR2A25 OR2A24P|OR2A25P|OR2A27 olfactory receptor family 2 subfamily A member 25 protein-coding 506.5 chr10 57831172 57831475 + 2.5 NA Intergenic Intergenic 436571 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 477-9 chr18 8791216 8791532 + 2.5 NA intron (NM_015210, intron 7 of 16) L1MEd|LINE|L1 73993 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 530-22 chr5 30519825 30520201 + 2.5 NA Intergenic Intergenic 639453 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 471-2 chr1 40781961 40782228 + 2.5 NA Intergenic Intergenic -1693 NM_172163 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 489.5-23 chr9 99034720 99034993 + 2.5 NA intron (NM_001855, intron 17 of 41) intron (NM_001855, intron 17 of 41) -70257 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 567-20 chr8 80897815 80898041 + 2.5 NA Intergenic L1MB7|LINE|L1 -23147 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 357.5-16 chr5 154557264 154557460 + 2.5 NA Intergenic L1MC1|LINE|L1 38710 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 318.5-34 chr9 4146183 4146401 + 2.5 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 5891 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 657-11 chr4 127801616 127801981 + 2.5 NA exon (NM_001317382, exon 6 of 19) exon (NM_001317382, exon 6 of 19) 18275 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 758-2 chr14 46462422 46463027 + 2.5 NA intron (NR_102701, intron 5 of 5) L1MA5|LINE|L1 -8635 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 182 chr1 101726244 101726320 + 2.5 NA Intergenic Charlie17a|DNA|hAT-Charlie 120798 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 201-3 chr10 33095430 33095548 + 2.5 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 21318 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 583-16 chr8 114387926 114388247 + 2.5 NA Intergenic L1ME3D|LINE|L1 -951147 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 362.5-5 chr11 77233505 77233744 + 2.5 NA intron (NM_182833, intron 13 of 16) MER63B|DNA|hAT-Blackjack 68042 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 505-12 chr18 43646302 43646582 + 2.5 NA Intergenic L1MB8|LINE|L1 -368952 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 248.5-21 chr5 38547697 38547829 + 2.5 NA intron (NM_002310, intron 1 of 19) Tigger3a|DNA|TcMar-Tigger 8883 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 647-8 chr16 61571746 61572287 + 2.5 NA Intergenic L1PA14|LINE|L1 464422 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 490-34 chr9 136455697 136456000 + 2.5 NA intron (NM_014866, intron 19 of 31) intron (NM_014866, intron 19 of 31) -16003 NM_019892 56623 Hs.120998 NM_019892 ENSG00000148384 INPP5E CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin inositol polyphosphate-5-phosphatase E protein-coding 390-26 chr5 153080217 153080519 + 2.5 NA Intergenic Intergenic -108019 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 195.5-24 chr4 87238156 87238262 + 2.5 NA Intergenic AluSg|SINE|Alu -17591 NM_001292006 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 153-4 chr11 23967445 23967570 + 2.5 NA Intergenic L1ME1|LINE|L1 -529546 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 360-43 chr5 165932538 165932689 + 2.5 NA Intergenic Intergenic 993757 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 292-7 chr14 65210682 65210907 + 2.5 NA Intergenic Zaphod3|DNA|hAT-Tip100 11553 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 399.5-19 chr4 27648511 27648877 + 2.5 NA Intergenic Intergenic 431215 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 394-3 chr10 4225701 4225959 + 2.5 NA intron (NR_108040, intron 2 of 2) MLT2D|LTR|ERVL 18082 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 882 chr1 23692799 23693166 + 2.5 NA intron (NM_001199802, intron 2 of 5) intron (NM_001199802, intron 2 of 5) 1176 NM_000975 6135 Hs.719951 NM_000975 ENSG00000142676 RPL11 DBA7|GIG34|L11|uL5 ribosomal protein L11 protein-coding 523-9 chr12 126942872 126943141 + 2.5 NA intron (NR_104646, intron 4 of 6) L1MA7|LINE|L1 -68316 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 572.5-4 chr2 225476838 225477079 + 2.5 NA intron (NM_001371273, intron 3 of 7) MER63D|DNA|hAT-Blackjack 76072 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 388-31 chr6 39545151 39545522 + 2.5 NA intron (NM_001289020, intron 11 of 21) intron (NM_001289020, intron 11 of 21) -113946 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 470-19 chr2 113120836 113121146 + 2.5 NA intron (NM_173841, intron 2 of 5) (TCT)n|Simple_repeat|Simple_repeat 3020 NM_001318914 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 545-18 chr5 146232942 146233335 + 2.5 NA intron (NM_018989, intron 6 of 20) intron (NM_018989, intron 6 of 20) 29533 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 658-4 chr15 88202880 88203172 + 2.5 NA intron (NM_001007156, intron 3 of 15) LTR16C|LTR|ERVL 2948 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 496-6 chr14 21278527 21278752 + 2.5 NA Intergenic Intergenic -9160 NM_004500 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 508-7 chr15 70151008 70151292 + 2.5 NA Intergenic Intergenic -53233 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 502-20 chr8 133806813 133807074 + 2.5 NA Intergenic Intergenic -29591 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 476-3 chr1 191739556 191739903 + 2.5 NA Intergenic Intergenic -418733 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 321-10 chr14 61835725 61835955 + 2.5 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 23137 NM_001367657 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 495-16 chr5 90608761 90609367 + 2.5 NA intron (NR_003149, intron 1 of 89) intron (NR_003149, intron 1 of 89) 50267 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 626-11 chr2 108233013 108233669 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR -6627 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 506-29 chr8 79643798 79644237 + 2.5 NA intron (NM_007029, intron 3 of 4) intron (NM_007029, intron 3 of 4) 32900 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 302-20 chr3 112626766 112626992 + 2.5 NA intron (NM_199512, intron 3 of 7) intron (NM_199512, intron 3 of 7) 14264 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 317-18 chr3 31383378 31383575 + 2.5 NA Intergenic Intergenic -149449 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 351-23 chr2 225004739 225004959 + 2.5 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 5691 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 217-30 chr9 12293807 12293934 + 2.5 NA Intergenic Intergenic -399515 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 418.5-26 chr6 137615556 137615777 + 2.5 NA Intergenic Intergenic -49980 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 315-13 chr17 70752182 70752355 + 2.5 NA Intergenic Intergenic 449911 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 562.5-14 chr2 180899195 180899634 + 2.5 NA intron (NR_104324, intron 4 of 4) HAL1|LINE|L1 -80971 NM_182678 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 479.5-8 chr3 111856749 111857056 + 2.5 NA intron (NM_001134437, intron 2 of 17) L2a|LINE|L2 -2278 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 412.5-31 chr8 119130629 119130909 + 2.5 NA Intergenic Intergenic -61987 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 581.5-20 chr9 71187353 71187774 + 2.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -65942 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 378.5-16 chr2 118362292 118362444 + 2.5 NA Intergenic L1MB4|LINE|L1 -175982 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 376.5-26 chr6 112197733 112197935 + 2.5 NA intron (NM_001105206, intron 5 of 38) intron (NM_001105206, intron 5 of 38) -38762 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 615 chr1 53045747 53046101 + 2.5 NA intron (NM_001193600, intron 13 of 14) L1ME1|LINE|L1 -16128 NM_001199081 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 300.5-38 chr8 78642161 78642283 + 2.5 NA Intergenic L1MA8|LINE|L1 -23867 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 420-35 chr8 130819422 130819724 + 2.5 NA intron (NM_001115, intron 13 of 17) intron (NM_001115, intron 13 of 17) 221336 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 674-6 chr4 96803233 96803695 + 2.5 NA intron (NR_147149, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 492761 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 631-14 chr5 166318745 166319174 + 2.5 NA Intergenic Intergenic 607411 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 451.5-18 chr4 84985341 84985693 + 2.5 NA intron (NR_152782, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 18033 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 398.5-20 chr6 73116321 73116593 + 2.5 NA intron (NM_001160132, intron 7 of 13) AluJr|SINE|Alu 27057 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 301-25 chr2 147020864 147021121 + 2.5 NA Intergenic Charlie1|DNA|hAT-Charlie 433935 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 472-15 chr5 15923482 15923785 + 2.5 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -11549 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 400.5-20 chr5 69164268 69164446 + 2.5 NA Intergenic L1MC1|LINE|L1 -2653 NM_001354845 891 Hs.23960 NM_031966 ENSG00000134057 CCNB1 CCNB cyclin B1 protein-coding 505-13 chr2 58791740 58792144 + 2.5 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 271189 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 345.5-13 chr15 79278501 79278740 + 2.5 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -4102 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 248.5-25 chr5 180049641 180049807 + 2.5 NA intron (NM_001280801, intron 1 of 7) L1MEd|LINE|L1 22035 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 699.5-11 chr9 13598981 13599288 + 2.5 NA Intergenic MER33|DNA|hAT-Charlie -167805 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 217.5-15 chr16 63098420 63098530 + 2.5 NA Intergenic Intergenic -1062037 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 492-13 chr15 60730593 60730931 + 2.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 49193 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 376.5-2 chr1 239050666 239051164 + 2.5 NA Intergenic AluJb|SINE|Alu -335653 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 292-3 chr1 214947720 214947850 + 2.5 NA Intergenic LTR8|LTR|ERV1 -57757 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 317-20 chr4 60384619 60384798 + 2.5 NA Intergenic Intergenic -537911 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 523-5 chr10 56291250 56291587 + 2.5 NA Intergenic L1M2|LINE|L1 69841 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 203-22 chr5 160695067 160695234 + 2.5 NA intron (NM_025153, intron 3 of 25) LTR54|LTR|ERV1 -9759 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 670.5 chr1 55036415 55036986 + 2.5 NA Intergenic Intergenic -2776 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 423.5-33 chr9 74248140 74248568 + 2.5 NA Intergenic L1PA13|LINE|L1 -123177 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 406.5-8 chr14 22999494 22999918 + 2.5 NA intron (NM_001282970, intron 1 of 7) intron (NM_001282970, intron 1 of 7) 1331 NM_001282969 60686 Hs.255874 NM_021944 ENSG00000100802 C14orf93 RTFC chromosome 14 open reading frame 93 protein-coding 277.5-36 chr9 130708220 130708441 + 2.5 NA Intergenic AluSx1|SINE|Alu -5551 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 626.5-6 chr22 33305652 33305978 + 2.5 NA intron (NM_133642, intron 11 of 14) intron (NM_133642, intron 11 of 14) 130854 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 358-5 chr10 27552153 27552312 + 2.5 NA Intergenic L1PA4|LINE|L1 47928 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 989.5 chr20 14832404 14833105 + 2.5 NA intron (NM_001351663, intron 5 of 17) LTR16E1|LTR|ERVL 96764 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 523-21 chr4 85456678 85457051 + 2.5 NA Intergenic Intergenic -18286 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 192.5-25 chr5 8636505 8636674 + 2.5 NA Intergenic L1M5|LINE|L1 175664 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 520-16 chr2 134022960 134023392 + 2.5 NA Intergenic AluSx3|SINE|Alu -96759 NM_001371457 679-9 chr18 72700691 72701116 + 2.5 NA Intergenic Intergenic 152479 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 281.5-11 chr16 63196650 63196843 + 2.5 NA Intergenic Intergenic -1160308 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 530.5-13 chr6 39294136 39294525 + 2.5 NA Intergenic LTR33|LTR|ERVL 20089 NM_001135111 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 499.5-25 chr8 99625217 99625447 + 2.5 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -88471 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 685-10 chr6 34679228 34679713 + 2.5 NA intron (NM_022758, intron 1 of 3) L1ME4a|LINE|L1 -16684 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 634-9 chr3 82993703 82994018 + 2.5 NA Intergenic L1MA3|LINE|L1 1007718 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 426.5-5 chr10 62158978 62159234 + 2.5 NA Intergenic Intergenic 109738 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 623-2 chr15 88671847 88672168 + 2.5 NA Intergenic L1MA3|LINE|L1 32991 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 263-19 chr4 81303072 81303305 + 2.5 NA Intergenic Intergenic -87966 NM_001363401 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 397-6 chr11 61968365 61968533 + 2.5 NA promoter-TSS (NM_002032) promoter-TSS (NM_002032) -815 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 354.5-7 chr13 69149286 69149530 + 2.5 NA Intergenic Intergenic -72938 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 291-25 chr7 47411277 47411399 + 2.5 NA intron (NM_022748, intron 13 of 30) MER1B|DNA|hAT-Charlie 53465 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 604.5-2 chr11 91809581 91809969 + 2.5 NA Intergenic L1MA4|LINE|L1 -415259 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 797-4 chr3 116965453 116966107 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 44349 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 387.5-11 chr2 25826350 25826600 + 2.5 NA intron (NM_018263, intron 2 of 11) intron (NM_018263, intron 2 of 11) 4426 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 347.5-6 chr13 43363366 43363585 + 2.5 NA intron (NM_001347966, intron 6 of 17) intron (NM_001347966, intron 6 of 17) -85377 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 435-4 chr10 51855474 51855708 + 2.5 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -155996 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 304.5 chr1 10528017 10528237 + 2.5 NA intron (NM_004565, intron 2 of 8) intron (NM_004565, intron 2 of 8) 53177 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 403-8 chr10 33014571 33014906 + 2.5 NA Intergenic AluJr|SINE|Alu -56508 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 477.5-5 chr10 53803623 53803945 + 2.5 NA 3' UTR (NM_001354420, exon 34 of 34) 3' UTR (NM_001354420, exon 34 of 34) -682446 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 585-10 chr2 225225725 225225989 + 2.5 NA Intergenic Intergenic -173853 NM_001371273 715.5-12 chr8 37203077 37203394 + 2.5 NA Intergenic Intergenic 290678 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 482.5-15 chr6 104817569 104817818 + 2.5 NA intron (NM_001350560, intron 4 of 21) HAL1|LINE|L1 41853 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 675-10 chr5 81445505 81445862 + 2.5 NA intron (NM_012446, intron 12 of 16) intron (NM_012446, intron 12 of 16) -51549 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 642-2 chr12 118836024 118836330 + 2.5 NA Intergenic Intergenic -2641 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 518.5-16 chr5 122544171 122544457 + 2.5 NA Intergenic Intergenic 40286 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 645-7 chr17 55003690 55004345 + 2.5 NA intron (NM_178509, intron 7 of 17) AluSz|SINE|Alu -35232 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 380-2 chr12 64466409 64466599 + 2.5 NA intron (NM_013254, intron 4 of 20) intron (NM_013254, intron 4 of 20) 14384 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 345.5-22 chr3 81616031 81616285 + 2.5 NA intron (NM_000158, intron 7 of 15) L1MD1|LINE|L1 145487 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 486.5-15 chr7 113835288 113835638 + 2.5 NA Intergenic L2a|LINE|L2 83546 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 465-10 chr10 81493197 81493397 + 2.5 NA Intergenic Intergenic -381897 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 356.5-41 chr8 132523960 132524213 + 2.5 NA Intergenic Intergenic 37393 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 435.5-24 chrX 155224710 155224970 + 2.5 NA intron (NM_003372, intron 2 of 5) L1MEh|LINE|L1 8380 NM_003372 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 561.5-2 chr12 46848611 46848949 + 2.5 NA Intergenic MER4-int|LTR|ERV1 -22783 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 639.5-2 chr15 75092054 75092438 + 2.5 NA Intergenic L1ME3|LINE|L1 48960 NM_001301104 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 301-4 chr1 211437162 211437485 + 2.5 NA Intergenic Intergenic 54568 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 435.5-11 chr3 69649747 69650029 + 2.5 NA Intergenic Intergenic -89576 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 446-25 chr22 24942570 24942917 + 2.5 NA intron (NM_001001663, intron 1 of 3) intron (NM_001001663, intron 1 of 3) 3952 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 489-24 chr5 45739203 45739543 + 2.5 NA Intergenic Intergenic -42993 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 459 chr1 182350974 182351233 + 2.5 NA Intergenic Intergenic -37042 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 442-20 chr7 4198100 4198367 + 2.5 NA intron (NM_001079653, intron 9 of 19) intron (NM_001079653, intron 9 of 19) -63396 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 474-34 chr7 129339309 129339588 + 2.5 NA intron (NM_001130720, intron 1 of 16) L1ME4b|LINE|L1 -28932 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 226.5-13 chr19 38878853 38878953 + 2.5 NA promoter-TSS (NM_198445) promoter-TSS (NM_198445) -628 NM_001195833 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 600-8 chr11 82469868 82470289 + 2.5 NA Intergenic L1MD3|LINE|L1 -66165 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 483-17 chr2 208885217 208885797 + 2.5 NA Intergenic Intergenic 342865 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 529.5-10 chr16 50711957 50712296 + 2.5 NA exon (NM_022162, exon 4 of 12) exon (NM_022162, exon 4 of 12) 12746 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 727-4 chr14 43319174 43319587 + 2.5 NA Intergenic Intergenic 1187903 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 338.5-16 chr18 33871905 33872202 + 2.5 NA intron (NM_001353232, intron 9 of 9) intron (NM_001353232, intron 9 of 9) 176559 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 476-24 chr4 55014971 55015161 + 2.5 NA Intergenic Intergenic 110529 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 501.5-11 chr18 13116848 13117334 + 2.5 NA intron (NM_032142, intron 43 of 44) AluJb|SINE|Alu -101669 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 648-7 chr17_KI270857v1_alt 1636799 1637222 + 2.5 NA intron (NM_198839, intron 1 of 59) intron (NM_198839, intron 1 of 59) 8957 NM_198839 31 Hs.160556 NM_000664 ENSG00000278540 ACACA ACAC|ACACAD|ACC|ACC1|ACCA acetyl-CoA carboxylase alpha protein-coding 330.5-31 chr5 137031418 137031798 + 2.5 NA intron (NM_004598, intron 6 of 10) intron (NM_004598, intron 6 of 10) -96589 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 380.5-23 chr5 83628202 83628370 + 2.5 NA Intergenic Intergenic -65972 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 503.5-10 chr22 19038778 19039174 + 2.5 NA exon (NM_001173534, exon 9 of 9) exon (NM_001173534, exon 9 of 9) 9399 NR_024157 25786 Hs.720269 NR_024157 ENSG00000273311 DGCR11 DGS-D DiGeorge syndrome critical region gene 11 ncRNA 436.5-22 chr9 88485858 88486070 + 2.5 NA Intergenic Intergenic -49137 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 519.5-14 chr4 97785182 97785563 + 2.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 358104 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 634.5-14 chr7 33123985 33124319 + 2.5 NA Intergenic MER101-int|LTR|ERV1 -5133 NR_145411 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 494-6 chr14 67371860 67372220 + 2.5 NA intron (NM_004094, intron 2 of 7) AluJo|SINE|Alu 11712 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 347.5-20 chr3 113641953 113642141 + 2.5 NA Intergenic L1MEg|LINE|L1 47171 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 298.5-11 chr16 57031644 57031838 + 2.5 NA intron (NM_001330552, intron 11 of 47) intron (NM_001330552, intron 11 of 47) 14667 NM_032206 84166 Hs.528836 NM_032206 ENSG00000140853 NLRC5 CLR16.1|NOD27|NOD4 NLR family CARD domain containing 5 protein-coding 930.5 chr4 97464948 97465461 + 2.5 NA intron (NR_102713, intron 4 of 5) L1ME3A|LINE|L1 98278 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 573-15 chr6 54313989 54314465 + 2.5 NA intron (NM_014464, intron 1 of 10) intron (NM_014464, intron 1 of 10) 5786 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 560.5-13 chr8 139114154 139114560 + 2.5 NA Intergenic L1M2|LINE|L1 -200316 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 720-7 chr5 72767250 72767657 + 2.5 NA Intergenic Intergenic -49138 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 486-31 chr3 183161603 183161978 + 2.5 NA intron (NM_014398, intron 1 of 5) intron (NM_014398, intron 1 of 5) 944 NM_014398 27074 Hs.518448 NM_014398 ENSG00000078081 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal associated membrane protein 3 protein-coding 353-6 chr10 51962824 51962975 + 2.5 NA intron (NM_001098512, intron 5 of 17) BLACKJACK|DNA|hAT-Blackjack -263304 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 607.5-3 chr10 112245702 112246096 + 2.5 NA Intergenic Intergenic -37501 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 293-2 chr11 85058553 85058755 + 2.5 NA intron (NM_001351274, intron 5 of 26) L1ME3|LINE|L1 -135233 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 352.5-21 chr3 119989497 119989740 + 2.5 NA intron (NM_002093, intron 2 of 11) AluSx1|SINE|Alu 95030 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 277-28 chr20 17261512 17261734 + 2.5 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 34583 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 509.5-6 chr12 97366018 97366532 + 2.5 NA Intergenic Intergenic -96501 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 369-35 chr5 34006499 34006672 + 2.5 NA intron (NR_037951, intron 6 of 8) intron (NR_037951, intron 6 of 8) 1465 NM_014324 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 376.5-12 chr2 25937429 25937697 + 2.5 NA intron (NM_002254, intron 5 of 7) intron (NM_002254, intron 5 of 7) 44934 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 579.5-11 chr4 32753559 32754078 + 2.5 NA Intergenic Intergenic 402780 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 395-14 chr17 79164153 79164414 + 2.5 NA intron (NM_001350453, intron 3 of 13) intron (NM_001350453, intron 3 of 13) 89346 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 844-3 chr11 81741989 81742580 + 2.5 NA Intergenic Intergenic 148552 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 447.5-10 chr2 122209278 122209567 + 2.5 NA Intergenic Intergenic 453771 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 584.5-5 chr22 40937551 40937977 + 2.5 NA Intergenic AluSx|SINE|Alu -13614 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 531.5-13 chr7 112136480 112136835 + 2.5 NA intron (NM_001363540, intron 1 of 52) L2c|LINE|L2 69742 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 789.5-5 chr3 98817533 98817993 + 2.5 NA intron (NM_080927, intron 9 of 15) intron (NM_080927, intron 9 of 15) 54456 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 229.5-21 chr22 27485178 27485288 + 2.5 NA Intergenic Intergenic 174582 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 414-26 chr3 131142255 131142456 + 2.5 NA intron (NM_001353032, intron 7 of 14) intron (NM_001353032, intron 7 of 14) 114627 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 1069-3 chr8 89287542 89288020 + 2.5 NA Intergenic Intergenic 469930 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 451-12 chr12 50929389 50929581 + 2.5 NA intron (NM_014033, intron 1 of 1) intron (NM_014033, intron 1 of 1) 4470 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 716.5 chr16 47907399 47907917 + 2.5 NA intron (NR_110650, intron 5 of 5) intron (NR_110650, intron 5 of 5) -20528 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 530.5-5 chr18 9185086 9185419 + 2.5 NA intron (NM_001204056, intron 2 of 11) L2c|LINE|L2 47689 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 245-31 chr5 160773184 160773345 + 2.5 NA intron (NM_001366652, intron 2 of 24) intron (NM_001366652, intron 2 of 24) 78947 NM_001366654 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 511.5-11 chr2 133459612 133460034 + 2.5 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 108640 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 434-11 chr21 19420558 19420826 + 2.5 NA Intergenic LTR16D|LTR|ERVL 479063 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 542.5-15 chr20 55110022 55110306 + 2.5 NA Intergenic L1MCa|LINE|L1 -312879 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 566.5-7 chr5 62061507 62061916 + 2.5 NA Intergenic Intergenic -244451 NM_004520 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 507 chr1 237646066 237646469 + 2.5 NA intron (NM_001035, intron 48 of 104) AluSx3|SINE|Alu 175148 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 365-30 chr8 28026150 28026366 + 2.5 NA intron (NM_001010906, intron 18 of 18) L1ME4b|LINE|L1 -33585 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 566.5-8 chr5 84410036 84410286 + 2.5 NA Intergenic Intergenic -25281 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 474.5-5 chr11 97700218 97700432 + 2.5 NA Intergenic Intergenic 1191900 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 466.5-10 chr17 32344047 32344355 + 2.5 NA Intergenic AluJb|SINE|Alu -2028 NM_022344 64149 Hs.655257 NM_022344 ENSG00000108666 C17orf75 NJMU-R1|SRI2 chromosome 17 open reading frame 75 protein-coding 411.5-20 chr22 48175387 48175696 + 2.5 NA Intergenic Intergenic -98823 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 441-2 chr1 89793926 89794245 + 2.5 NA Intergenic Intergenic -26947 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 426-3 chr11 2651752 2652054 + 2.5 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 48095 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 492-10 chr14 86764694 86765086 + 2.5 NA Intergenic Intergenic -140888 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 406-18 chr5 24485098 24485346 + 2.5 NA Intergenic L2a|LINE|L2 159756 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 645.5-7 chr2 188281749 188282075 + 2.5 NA intron (NR_126396, intron 1 of 2) L2b|LINE|L2 5779 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 428.5-20 chr6 47497790 47498090 + 2.5 NA intron (NM_012120, intron 1 of 17) HAL1|LINE|L1 20151 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 547.5-4 chr2 196847951 196848403 + 2.5 NA intron (NM_001321099, intron 21 of 27) intron (NM_001321099, intron 21 of 27) -37901 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 436.5-21 chr8 144922551 144922725 + 2.5 NA Intergenic LTR26|LTR|ERV1 -20461 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 353.5-3 chr10 61195042 61195284 + 2.5 NA Intergenic MIRc|SINE|MIR 178888 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 328-32 chr7 66260541 66260736 + 2.5 NA intron (NM_003596, intron 2 of 5) L1ME3D|LINE|L1 55304 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 493.5-5 chr13 68050839 68051269 + 2.5 NA Intergenic Intergenic 678667 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 174-8 chr14 47499701 47499812 + 2.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -156510 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 401-17 chr16 66102999 66103219 + 2.5 NA Intergenic Intergenic -263582 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 601-7 chr9 108576105 108576432 + 2.5 NA Intergenic L1ME4a|LINE|L1 279718 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 228.5-10 chr12 12265995 12266125 + 2.5 NA intron (NM_002336, intron 1 of 22).2 intron (NM_002336, intron 1 of 22).2 984 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 540-10 chr14 55038597 55039004 + 2.5 NA intron (NM_199421, intron 2 of 2) HAL1|LINE|L1 11564 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 376.5-5 chr11 96645917 96646147 + 2.5 NA Intergenic Intergenic 137607 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 465.5-22 chr8 106008800 106008999 + 2.5 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 51604 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 344-30 chr7 47400841 47401028 + 2.5 NA intron (NM_022748, intron 13 of 30) intron (NM_022748, intron 13 of 30) 63869 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 370-5 chr10 36573596 36573852 + 2.5 NA Intergenic Intergenic -552133 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 448.5-4 chr11 12954994 12955438 + 2.5 NA Intergenic AluSz|SINE|Alu 34332 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 525 chr1 57257822 57258111 + 2.5 NA intron (NM_001353980, intron 5 of 5) MLT1D|LTR|ERVL-MaLR 165146 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 336.5-29 chr9 32646217 32646505 + 2.5 NA Intergenic Intergenic -10692 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 288.5-11 chr11 17914034 17914190 + 2.5 NA intron (NR_104041, intron 8 of 9) L2c|LINE|L2 98935 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 335.5-24 chr21 29746344 29746509 + 2.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -1749 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 344.5-10 chr15 33606711 33606975 + 2.5 NA intron (NM_001243996, intron 18 of 102) intron (NM_001243996, intron 18 of 102) 295876 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 394.5-27 chr8 130554891 130555132 + 2.5 NA Intergenic L1MA4|LINE|L1 -111337 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 420.5-12 chr20 44459192 44459399 + 2.5 NA intron (NR_132343, intron 2 of 2) MIR|SINE|MIR 6049 NR_132343 140834 Hs.357589 NM_001287807 ENSG00000168746 LINC01620 C20orf62|dJ1013A22.3 long intergenic non-protein coding RNA 1620 ncRNA 265.5-27 chr4 86062419 86062649 + 2.5 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -57272 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 608-14 chr6 45228726 45228992 + 2.5 NA intron (NM_001350325, intron 2 of 10) AluSx|SINE|Alu -31089 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 342-17 chr2 26518031 26518347 + 2.5 NA intron (NM_194248, intron 4 of 46) intron (NM_194248, intron 4 of 46) -40065 NM_194323 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 460-8 chr14 62080642 62080988 + 2.5 NA intron (NM_001367661, intron 6 of 8) intron (NM_001367661, intron 6 of 8) -36542 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 368-36 chr5 145772105 145772413 + 2.5 NA intron (NM_205846, intron 5 of 6) MIR|SINE|MIR 63083 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 258-6 chr14 46155919 46156192 + 2.5 NA intron (NR_102702, intron 1 of 3) L1PB1|LINE|L1 91896 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1218 chr2 115662728 115663404 + 2.5 NA intron (NM_001321912, intron 6 of 25) L1MA1|LINE|L1 319251 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 664.5 chr1 88698444 88699065 + 2.5 NA intron (NM_001320708, intron 1 of 20) HAL1ME|LINE|L1 -13550 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 661-4 chr15 91534519 91534844 + 2.5 NA Intergenic Intergenic 71342 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 345.5-19 chr2 120834377 120834569 + 2.5 NA intron (NM_005270, intron 2 of 13) MER74A|LTR|ERVL 42192 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 368.5-29 chr7 129233745 129233967 + 2.5 NA intron (NM_001130720, intron 1 of 16) L2|LINE|L2 8826 NM_001130720 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 578-24 chr6 120451161 120451625 + 2.5 NA Intergenic L1M4|LINE|L1 436214 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 556-3 chr11 6272457 6272909 + 2.5 NA TTS (NM_001363552) TTS (NM_001363552) 12845 NM_001363552 887 Hs.203 NM_176875 ENSG00000110148 CCKBR CCK-B|CCK2R|GASR cholecystokinin B receptor protein-coding 329-12 chr16 77505371 77505597 + 2.5 NA Intergenic L1ME2|LINE|L1 -70450 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 451.5-10 chr18 1022243 1022626 + 2.5 NA Intergenic L1ME3A|LINE|L1 -94441 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 477.5-23 chr7 17234762 17235054 + 2.5 NA Intergenic Intergenic -63744 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 364-38 chrX 89157117 89157315 + 2.5 NA Intergenic Intergenic 409991 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 403-29 chr21 28431662 28432021 + 2.5 NA Intergenic LTR40a|LTR|ERVL -107477 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 289.5-18 chr17 63118501 63118667 + 2.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 152349 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 400-15 chr2 60627790 60628049 + 2.5 NA Intergenic A-rich|Low_complexity|Low_complexity -74265 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 443.5 chr1 24075563 24075851 + 2.5 NA intron (NM_152372, intron 21 of 36) L2a|LINE|L2 36428 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 423.5-9 chr13 112998258 112998602 + 2.5 NA intron (NM_001320816, intron 1 of 29) intron (NM_001320816, intron 1 of 29) -3284 NM_024979 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 325.5-16 chr2 211539919 211540069 + 2.5 NA intron (NM_001042599, intron 20 of 26) L3|LINE|CR1 886366 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 374.5-10 chr16 8581034 8581249 + 2.5 NA intron (NM_001290097, intron 2 of 3) intron (NM_001290097, intron 2 of 3) 8697 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 165-13 chr9 30423055 30423150 + 2.5 NA Intergenic Intergenic -14648 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 505.5-11 chr17 54181283 54181703 + 2.5 NA Intergenic MIR3|SINE|MIR 358566 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 272.5-17 chr17 72574408 72574570 + 2.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 18315 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 684.5-3 chr17 28068577 28068878 + 2.5 NA intron (NM_016231, intron 1 of 10) AluJr4|SINE|Alu 26050 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 601-5 chr6 162966947 162967331 + 2.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 87022 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 342-29 chr5 150667570 150667740 + 2.5 NA intron (NM_001122853, intron 2 of 6) L2|LINE|L2 6404 NM_001122853 91977 Hs.91626 NM_133371 ENSG00000164591 MYOZ3 CS-3|CS3|FATZ-3|FRP3 myozenin 3 protein-coding 307-12 chr14 28370067 28370297 + 2.5 NA Intergenic Intergenic 395137 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 531-28 chr4 160774185 160774620 + 2.5 NA Intergenic Intergenic -996618 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 311.5-19 chr12 78908811 78908980 + 2.5 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 44121 NM_001291901 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 808.5 chr10 61065555 61065997 + 2.5 NA Intergenic Intergenic 49501 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 555-22 chr5 66509404 66509648 + 2.5 NA intron (NR_105001, intron 1 of 2) MLT1N2|LTR|ERVL-MaLR 2078 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 645.5 chr1 35833009 35833429 + 2.5 NA intron (NR_146062, intron 11 of 19) AluSc8|SINE|Alu 25203 NM_017629 192670 Hs.744858 NM_017629 ENSG00000134698 AGO4 EIF2C4 argonaute RISC component 4 protein-coding 288.5-17 chr15 64678870 64679052 + 2.5 NA intron (NM_015042, intron 5 of 8) intron (NM_015042, intron 5 of 8) 24320 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 485.5-23 chr8 13546130 13546400 + 2.5 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -20604 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 626-14 chr4 14545313 14545752 + 2.5 NA intron (NR_126435, intron 5 of 6) LTR33B|LTR|ERVL 342637 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 349-26 chr3 157722754 157722987 + 2.5 NA Intergenic L1PA16|LINE|L1 179526 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 413.5-4 chr12 4029787 4030057 + 2.5 NA Intergenic Intergenic -156474 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 714.5-3 chr12 8077575 8078121 + 2.5 NA Intergenic Intergenic -4363 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 578-27 chr9 96804982 96805400 + 2.5 NA Intergenic L1MA9|LINE|L1 -27062 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 437-2 chr1 188524222 188524480 + 2.5 NA Intergenic MLT2A1|LTR|ERVL 1080723 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 460.5-26 chr5 131064164 131064654 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 100847 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 687-11 chr9 5971512 5971826 + 2.5 NA intron (NM_001017969, intron 2 of 7) intron (NM_001017969, intron 2 of 7) -36157 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 230.5-13 chr11 25591727 25591881 + 2.5 NA Intergenic L1PB1|LINE|L1 -597319 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 381-31 chr8 92151933 92152146 + 2.5 NA Intergenic Intergenic -48654 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 575.5-8 chr5 5321890 5322183 + 2.5 NA Intergenic L1PA11|LINE|L1 -100641 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 508-17 chr22 35390315 35390692 + 2.5 NA intron (NM_002133, intron 4 of 4) AluSx1|SINE|Alu 9407 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 256.5-29 chr6 24762707 24762850 + 2.5 NA Intergenic MER97b|DNA|hAT-Tip100 -12159 NM_015895 51053 Hs.234896 NM_015895 ENSG00000112312 GMNN Gem|MGORS6 geminin DNA replication inhibitor protein-coding 492-12 chr15 57036843 57037074 + 2.5 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 117513 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 608-16 chr7 90292141 90292558 + 2.5 NA intron (NM_001039706, intron 15 of 22) PABL_A-int|LTR|ERV1 -42874 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 332-29 chr4 33259508 33259721 + 2.5 NA Intergenic Intergenic 780279 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 490.5-20 chr8 133229077 133229453 + 2.5 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 38226 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 541.5-6 chr11 119141609 119141983 + 2.5 NA Intergenic AluSz6|SINE|Alu -7256 NM_001348191 64137 Hs.126378 NM_022169 ENSG00000172350 ABCG4 WHITE2 ATP binding cassette subfamily G member 4 protein-coding 365-35 chr8 113735640 113735836 + 2.5 NA Intergenic Intergenic -298799 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 669.5-5 chr18 3308374 3308800 + 2.5 NA Intergenic Intergenic 41972 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 552.5-19 chr8 87584057 87584374 + 2.5 NA Intergenic L2|LINE|L2 289800 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 296.5-32 chr7 1630641 1630799 + 2.5 NA Intergenic (CCAT)n|Simple_repeat|Simple_repeat 16250 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 363.5-16 chr2 133462078 133462384 + 2.5 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 106232 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 627.5-3 chr11 75246519 75247002 + 2.5 NA Intergenic Intergenic 5986 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 848.5 chr1 84346027 84346487 + 2.5 NA intron (NM_001134663, intron 3 of 3) intron (NM_001134663, intron 3 of 3) 38544 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 533-15 chr2 50412822 50413259 + 2.5 NA intron (NM_001330093, intron 17 of 22) L1M1|LINE|L1 -65284 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 482.5-16 chr8 28362018 28362316 + 2.5 NA intron (NM_018660, intron 1 of 9) MIR3|SINE|MIR 23520 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 485-5 chr17 73706645 73707002 + 2.5 NA Intergenic Intergenic -31031 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 387-38 chr8 104461862 104462093 + 2.5 NA intron (NM_001385, intron 1 of 9) intron (NM_001385, intron 1 of 9) 5078 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 825.5-2 chr18 2988285 2988698 + 2.5 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 23456 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 439.5-27 chr7 4010342 4010582 + 2.5 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -119223 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 485-4 chr15 64203257 64203471 + 2.5 NA intron (NM_001329607, intron 9 of 11) intron (NM_001329607, intron 9 of 11) -40209 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 452-4 chr11 27621663 27621867 + 2.5 NA intron (NR_102708, intron 2 of 3) intron (NR_102708, intron 2 of 3) 12862 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 298-28 chr8 28656488 28656919 + 2.5 NA Intergenic Intergenic 44761 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 381-27 chr7 14447242 14447643 + 2.5 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 394008 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 290.5-12 chr14 88388739 88388863 + 2.5 NA intron (NM_001040428, intron 1 of 10) LTR41B|LTR|ERVL 3144 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 659.5-2 chr12 18620976 18621491 + 2.5 NA intron (NM_001288774, intron 31 of 32) A-rich|Low_complexity|Low_complexity 116276 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 479-23 chr7 88253862 88254241 + 2.5 NA Intergenic L1MA2|LINE|L1 -27058 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 901-4 chr22 24726877 24727416 + 2.5 NA intron (NM_001008496, intron 16 of 20) intron (NM_001008496, intron 16 of 20) -37355 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 223-8 chr14 26536704 26536902 + 2.5 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 16627 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 537.5-18 chr8 136750189 136750448 + 2.5 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 219520 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 327.5-18 chr4 170083599 170083822 + 2.5 NA intron (NM_182662, intron 4 of 13) L1MA4|LINE|L1 6246 NM_016228 51166 Hs.529735 NM_016228 ENSG00000109576 AADAT KAT2|KATII|KYAT2 aminoadipate aminotransferase protein-coding 804.5-4 chr4 149359743 149360064 + 2.5 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 205608 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 489-37 chr9 103034017 103034335 + 2.5 NA Intergenic Intergenic 38843 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 770.5-4 chr20 11326932 11327463 + 2.5 NA Intergenic AluY|SINE|Alu -53814 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 213.5-26 chr4 172617371 172617504 + 2.5 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 71480 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 303.5-15 chr4 26083769 26083984 + 2.5 NA Intergenic Intergenic 169684 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 826.5-3 chr2 98357235 98357809 + 2.5 NA intron (NM_001079878, intron 1 of 6) L2c|LINE|L2 11066 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 766-4 chr14 62533487 62534174 + 2.5 NA Intergenic Intergenic -393857 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 317-22 chr5 77458698 77458886 + 2.5 NA intron (NM_018268, intron 5 of 12) intron (NM_018268, intron 5 of 12) 33524 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 400-13 chr16 71793901 71794141 + 2.5 NA intron (NM_001128, intron 1 of 22) Tigger15a|DNA|TcMar-Tigger 14813 NM_001030007 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 361.5-16 chr2 100586993 100587232 + 2.5 NA Intergenic L1MC3|LINE|L1 -16627 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 484-15 chr12 45748974 45749241 + 2.5 NA intron (NM_152641, intron 3 of 20) Tigger1|DNA|TcMar-Tigger 19398 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 469.5-4 chr10 62502182 62502571 + 2.5 NA intron (NM_199451, intron 4 of 7) AluSq2|SINE|Alu -18072 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 465.5-9 chr16 75857421 75857816 + 2.5 NA Intergenic L1MEf|LINE|L1 -131128 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 642.5-6 chr4 76216768 76217073 + 2.5 NA intron (NM_001242936, intron 1 of 7) intron (NM_001242936, intron 1 of 7) 2880 NM_001242936 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 277-24 chr2 26597202 26597423 + 2.5 NA intron (NM_001029881, intron 3 of 6) Charlie7|DNA|hAT-Charlie 34725 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 661.5-3 chr12 79406425 79406770 + 2.5 NA intron (NM_001291901, intron 8 of 9) intron (NM_001291901, intron 8 of 9) -12660 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 755-5 chr20 47623821 47624311 + 2.5 NA exon (NM_006534, exon 4 of 23) exon (NM_006534, exon 4 of 23) 122179 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 521.5-7 chr6 124823331 124823727 + 2.5 NA 3' UTR (NM_001300737, exon 8 of 8) 3' UTR (NM_001300737, exon 8 of 8) -139016 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 535.5-17 chr8 26990750 26990991 + 2.5 NA Intergenic Intergenic 58093 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 479.5-10 chr5 5970220 5970509 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 366928 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 330-30 chr3 57106287 57106473 + 2.5 NA intron (NM_001318864, intron 6 of 13) intron (NM_001318864, intron 6 of 13) -27112 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 393.5-11 chr18 6867552 6867857 + 2.5 NA intron (NM_001010000, intron 4 of 16) intron (NM_001010000, intron 4 of 16) 33219 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 303-3 chr1 161165331 161165470 + 2.5 NA exon (NM_001014443, exon 14 of 14) exon (NM_001014443, exon 14 of 14) -1026 NM_000309 5498 Hs.517373 NM_000309 ENSG00000143224 PPOX PPO|V290M|VP protoporphyrinogen oxidase protein-coding 300-21 chr5 44674849 44675054 + 2.5 NA Intergenic Intergenic 133842 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 412-19 chr20 51319130 51319601 + 2.5 NA Intergenic Intergenic 133612 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 320-6 chr12 974362 974530 + 2.5 NA intron (NM_001297419, intron 1 of 11) intron (NM_001297419, intron 1 of 11) 15595 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 753-9 chr6 137674113 137674552 + 2.5 NA intron (NR_125867, intron 3 of 3) intron (NR_125867, intron 3 of 3) 8686 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 478.5-18 chr4 141565579 141565912 + 2.5 NA Intergenic Tigger3|DNA|TcMar-Tigger -70838 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 569-11 chr22 44609584 44609919 + 2.5 NA intron (NR_044991, intron 3 of 4) intron (NR_044991, intron 3 of 4) 15668 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 463.5-28 chr9 86172931 86173349 + 2.5 NA Intergenic L1MB7|LINE|L1 45600 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 395-13 chr17 67343926 67344247 + 2.5 NA intron (NM_174871, intron 8 of 9) L2b|LINE|L2 22491 NM_002816 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 669.5-2 chr10 97957502 97957898 + 2.5 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) 72921 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 424.5-6 chr13 55243539 55243811 + 2.5 NA Intergenic Intergenic 69221 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 846 chr1 200840676 200841356 + 2.5 NA intron (NM_001297707, intron 7 of 17) intron (NM_001297707, intron 7 of 17) -31965 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 426.5-10 chr14 30232470 30232682 + 2.5 NA Intergenic MIR3|SINE|MIR -304729 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 355-14 chr17 78735544 78735772 + 2.5 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 1244 NM_001365040 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 570.5-2 chr10 23404279 23404654 + 2.5 NA Intergenic Intergenic -34803 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 303.5-22 chr6 38241770 38241946 + 2.5 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -239738 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 487-17 chr16 7693778 7694110 + 2.5 NA intron (NM_145893, intron 12 of 13) intron (NM_145893, intron 12 of 13) 361099 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 344.5-11 chr15 54210526 54210746 + 2.5 NA intron (NM_001329919, intron 4 of 31) intron (NM_001329919, intron 4 of 31) 197988 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 314.5-36 chr8 101878824 101879009 + 2.5 NA intron (NM_001040628, intron 4 of 7) L2b|LINE|L2 -87947 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 539.5-7 chr12 111401086 111401454 + 2.5 NA Intergenic Intergenic -4678 NM_005475 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 304-38 chr8 124390498 124390845 + 2.5 NA Intergenic L1PB3|LINE|L1 -17972 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 478.5-14 chr3 166062661 166062864 + 2.5 NA Intergenic Intergenic -225339 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 255.5-7 chr14 43200024 43200198 + 2.5 NA Intergenic MARNA|DNA|TcMar-Mariner 1307172 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 373-17 chr15 25547618 25547924 + 2.5 NA Intergenic L1ME1|LINE|L1 -108715 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 262-19 chr18 44497136 44497280 + 2.5 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 34489 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 998.5-3 chr4_GL000008v2_random 3010 3736 + 2.5 NA Intergenic AluYj4|SINE|Alu 174798 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 337-8 chr13 113581933 113582176 + 2.5 NA Intergenic Intergenic -2634 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 466-9 chr12 5649225 5649459 + 2.5 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 155210 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 309-24 chr3 60406791 60407016 + 2.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 210967 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 377.5-7 chr14 72975115 72975365 + 2.5 NA intron (NM_178441, intron 6 of 8) L3|LINE|CR1 11716 NM_001281735 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 491.5-3 chr1 197630309 197630542 + 2.5 NA intron (NR_125340, intron 9 of 19) MLT1A0|LTR|ERVL-MaLR 145055 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 294.5-33 chr8 47429123 47429465 + 2.5 NA intron (NM_001080394, intron 7 of 19) intron (NM_001080394, intron 7 of 19) 168356 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 689.5-7 chr7 45201794 45202132 + 2.5 NA Intergenic Intergenic 44172 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 501-3 chr1 157761359 157761602 + 2.5 NA intron (NM_001159488, intron 7 of 8) AluJb|SINE|Alu 15652 NM_001159488 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 716.5-2 chr3 180727663 180728088 + 2.5 NA intron (NR_109986, intron 10 of 13) AluSz6|SINE|Alu -48386 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 630-14 chr3 185978897 185979282 + 2.5 NA intron (NR_151491, intron 3 of 3) MER46C|DNA|TcMar-Tigger 19146 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 443.5-9 chr20 49401803 49401999 + 2.5 NA intron (NM_004975, intron 1 of 1) AluJb|SINE|Alu 80767 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 897-7 chr6 160362053 160362504 + 2.5 NA intron (NM_021977, intron 1 of 10) intron (NM_021977, intron 1 of 10) 13900 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 391-24 chr5 122648861 122649194 + 2.5 NA intron (NR_109881, intron 8 of 11) L2c|LINE|L2 -64427 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 498.5 chr10 91560029 91560260 + 2.5 NA intron (NR_024467, intron 1 of 4) L2c|LINE|L2 51316 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 511.5-5 chr10 114651687 114651891 + 2.5 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) 6486 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 502.5-12 chr5 35689785 35690237 + 2.5 NA intron (NM_024867, intron 10 of 36) intron (NM_024867, intron 10 of 36) 72148 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 462-30 chr4 162947732 162947965 + 2.5 NA Intergenic Tigger3|DNA|TcMar-Tigger 145780 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 254.5-17 chr16 35630108 35630243 + 2.5 NA Intergenic L1MEf|LINE|L1 -116377 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 707.5-8 chr7 40831501 40831964 + 2.5 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 148207 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 185.5-14 chr19 27775958 27776091 + 2.5 NA Intergenic (TTATTG)n|Simple_repeat|Simple_repeat -17407 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 362.5-25 chr5 5659571 5659831 + 2.5 NA Intergenic L1MB5|LINE|L1 237024 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 494.5-11 chr6 44761386 44761811 + 2.5 NA Intergenic LTR49-int|LTR|ERV1 -209717 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 813.5 chr10 91093717 91094237 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 48169 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 305-9 chr11 86661980 86662166 + 2.5 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 10125 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 284.5-14 chr14 36664072 36664249 + 2.5 NA intron (NM_006194, intron 3 of 4) intron (NM_006194, intron 3 of 4) 6592 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 460.5-24 chr5 23987565 23987865 + 2.5 NA intron (NR_131245, intron 4 of 4) L1M4|LINE|L1 36367 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 369-17 chr12 48716106 48716333 + 2.5 NA intron (NM_001240, intron 1 of 8) intron (NM_001240, intron 1 of 8) 488 NM_001277842 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 542.5-8 chr12 59706806 59707193 + 2.5 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 17629 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 323.5-22 chr3 106915976 106916260 + 2.5 NA Intergenic Intergenic 324520 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 362.5-32 chr9 27958678 27958943 + 2.5 NA intron (NM_001354574, intron 5 of 5) L1ME3|LINE|L1 -384944 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 174-16 chr20 10455457 10455656 + 2.5 NA intron (NM_001009608, intron 1 of 7) L1M4|LINE|L1 20251 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 411.5-13 chr16 82693291 82693542 + 2.5 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 4485 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 350-38 chr7 117372381 117372647 + 2.5 NA intron (NM_001301821, intron 10 of 12) MLT1I|LTR|ERVL-MaLR -49456 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 540-21 chr6 166209182 166209559 + 2.5 NA Intergenic Intergenic -27599 NR_125862 101929297 Hs.434661 NR_125862 ENSG00000233365 LOC101929297 - uncharacterized LOC101929297 ncRNA 735.5-2 chr22 41695688 41696185 + 2.5 NA non-coding (NR_160905, exon 4 of 4) non-coding (NR_160905, exon 4 of 4) -3567 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 386-28 chr6 73206600 73206811 + 2.5 NA Intergenic Intergenic 18791 NM_001126063 100129128 Hs.663639 NM_001126063 ENSG00000256980 KHDC1L - KH domain containing 1 like protein-coding 551-8 chr11 24365817 24366092 + 2.5 NA Intergenic Intergenic -131099 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 354-29 chr8 129051087 129051315 + 2.5 NA Intergenic Intergenic -85200 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 250-9 chr11 101738564 101738707 + 2.5 NA Intergenic Intergenic -154628 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 433.5-8 chr14 47053110 47053394 + 2.5 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 289994 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 543.5-4 chr11 104502641 104503056 + 2.5 NA Intergenic Intergenic 106454 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 364.5-7 chr14 61477287 61477493 + 2.5 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 92804 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 209-3 chr1 176107498 176107613 + 2.5 NA intron (NM_022457, intron 9 of 19) L1MC4a|LINE|L1 99689 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 736.5-2 chr11 119155573 119156079 + 2.5 NA intron (NM_001142505, intron 6 of 14) L2c|LINE|L2 6237 NM_001142505 64137 Hs.126378 NM_022169 ENSG00000172350 ABCG4 WHITE2 ATP binding cassette subfamily G member 4 protein-coding 569-6 chr16 30060828 30061124 + 2.5 NA intron (NM_001365307, intron 3 of 12) intron (NM_001365307, intron 3 of 12) -3303 NM_184043 226 Hs.513490 NM_000034 ENSG00000149925 ALDOA ALDA|GSD12|HEL-S-87p aldolase, fructose-bisphosphate A protein-coding 247.5-33 chr8 86233325 86233472 + 2.5 NA Intergenic MER31B|LTR|ERV1 -3017 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 425-40 chrX 39111038 39111279 + 2.5 NA Intergenic L1MB2|LINE|L1 216204 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 299.5-10 chr14 70328357 70328525 + 2.5 NA intron (NM_016468, intron 3 of 3) L1M4a2|LINE|L1 31242 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 408-12 chr13 47393334 47393509 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR -496345 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 442-13 chr2 57837210 57837514 + 2.5 NA Intergenic L1MC4a|LINE|L1 -70289 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 685.5 chr11 8032024 8032453 + 2.5 NA Intergenic Intergenic -6395 NM_003320 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 517.5 chr1 17240447 17240760 + 2.5 NA intron (NM_013358, intron 14 of 15).2 intron (NM_013358, intron 14 of 15).2 -8495 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 246-17 chr8 122816647 122816833 + 2.5 NA intron (NM_001362797, intron 1 of 4) MIRc|SINE|MIR 35085 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 538-14 chr5 23922844 23923245 + 2.5 NA Intergenic Intergenic -28304 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 347-10 chr17 55209018 55209316 + 2.5 NA Intergenic Intergenic -55793 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 375.5-19 chr3 111799249 111799529 + 2.5 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -59791 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 664.5-10 chr5 45013046 45013544 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 204348 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 380-10 chr3 46184308 46184765 + 2.5 NA Intergenic L1MB7|LINE|L1 23777 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 425.5-11 chr18 54777269 54777644 + 2.5 NA Intergenic Intergenic -51021 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 148-3 chr15 81043592 81043678 + 2.5 NA Intergenic MIR|SINE|MIR 42712 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 923.5 chr1 232279953 232280594 + 2.5 NA Intergenic Intergenic 235335 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 587.5-12 chr2 83076325 83076707 + 2.5 NA Intergenic Intergenic 219713 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 593.5-6 chr21 14776753 14777110 + 2.5 NA Intergenic L1ME1|LINE|L1 -133824 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 556 chr1 228932822 228933164 + 2.5 NA Intergenic MamGypsy2-I|LTR|Gypsy 197514 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 435-19 chr3 69588557 69589066 + 2.5 NA Intergenic Intergenic -150653 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 555.5-4 chr20 32526413 32526685 + 2.5 NA intron (NM_001256798, intron 2 of 10) intron (NM_001256798, intron 2 of 10) 16590 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 226.5-21 chr4 169042046 169042298 + 2.5 NA Intergenic MLT1O|LTR|ERVL-MaLR -31917 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 781.5-3 chr2 42134534 42134995 + 2.5 NA Intergenic AluJb|SINE|Alu -34589 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 269.5 chr1 28072762 28072971 + 2.5 NA intron (NM_001282562, intron 1 of 16) L1ME1|LINE|L1 15744 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 527.5-14 chr8 110243450 110243754 + 2.5 NA Intergenic L1PA16|LINE|L1 -267831 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 443-19 chr2 116547975 116548300 + 2.5 NA Intergenic L1MEf|LINE|L1 1204322 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 320-29 chr7 28478496 28478660 + 2.5 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 42963 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 324.5-20 chr18 75677442 75677683 + 2.5 NA Intergenic MIRc|SINE|MIR 34841 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 436.5-20 chr8 120122552 120123008 + 2.5 NA Intergenic Intergenic -2322 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 548-17 chr5 12333622 12333998 + 2.5 NA Intergenic L1PB1|LINE|L1 -241047 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 268-25 chr7 28061208 28061391 + 2.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -119158 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 293-14 chr2 20052383 20052510 + 2.5 NA promoter-TSS (NM_014713) promoter-TSS (NM_014713) -818 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 523-4 chr10 25208796 25209106 + 2.5 NA intron (NM_020752, intron 1 of 10) AluSx4|SINE|Alu -32675 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 417-41 chr8 107834906 107835230 + 2.5 NA Intergenic Intergenic 246871 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 335.5-17 chr2 69011161 69011353 + 2.5 NA Intergenic Intergenic -1887 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 370-22 chr22 35597091 35597257 + 2.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 20155 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 748.5 chr1 26507963 26508481 + 2.5 NA Intergenic AluSx|SINE|Alu -21539 NM_002953 6195 Hs.149957 NM_002953 ENSG00000117676 RPS6KA1 HU-1|MAPKAPK1A|RSK|RSK1|p90Rsk ribosomal protein S6 kinase A1 protein-coding 268-28 chr8 102044217 102044338 + 2.5 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 59845 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 431.5-25 chr9 25541742 25542020 + 2.5 NA Intergenic Intergenic 136977 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 296.5-30 chr6 123054791 123054911 + 2.5 NA intron (NM_001010852, intron 4 of 5) intron (NM_001010852, intron 4 of 5) 58616 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 288.5-38 chr6 72518172 72518297 + 2.5 NA Intergenic MIR|SINE|MIR -103609 NM_001160133 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 851.5 chr16 48362600 48363113 + 2.5 NA 3' UTR (NM_001348078, exon 17 of 17) 3' UTR (NM_001348078, exon 17 of 17) 3031 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 612.5-4 chr16 64580694 64581334 + 2.5 NA Intergenic LTR9C|LTR|ERV1 541049 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 322-19 chr8 25347199 25347428 + 2.5 NA intron (NM_024940, intron 26 of 51) intron (NM_024940, intron 26 of 51) 1911 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 540-22 chr7 71476221 71476474 + 2.5 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -168577 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 445.5 chr11 26258983 26259215 + 2.5 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 28908 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 392-11 chr12 4400855 4401138 + 2.5 NA Intergenic L1MEh|LINE|L1 -21284 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 601.5-12 chr4 181069345 181069684 + 2.5 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 89635 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 294.5-19 chr2 61783914 61784103 + 2.5 NA Intergenic Intergenic 70052 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 295-46 chr9 28398787 28398916 + 2.5 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 320454 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 649.5-11 chr9 25426091 25426581 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 252522 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 632-9 chr4 4880912 4881217 + 2.5 NA Intergenic HAL1|LINE|L1 21399 NM_002448 4487 Hs.424414 NM_002448 ENSG00000163132 MSX1 ECTD3|HOX7|HYD1|STHAG1 msh homeobox 1 protein-coding 556.5-24 chr9 71848175 71848446 + 2.5 NA Intergenic Intergenic 62935 NM_001025780 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 322.5-19 chr21 21826848 21827003 + 2.5 NA Intergenic L1MEi|LINE|L1 79940 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 777-2 chr13 100127771 100128204 + 2.5 NA intron (NR_148031, intron 4 of 22) intron (NR_148031, intron 4 of 22) 38894 NR_148031 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 344.5-21 chr3 8445596 8445808 + 2.5 NA intron (NR_033378, intron 3 of 3) MER5A|DNA|hAT-Charlie 55956 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 254.5-37 chr3 22182845 22183051 + 2.5 NA Intergenic Intergenic 225809 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 449.5-15 chr6 54968138 54968419 + 2.5 NA Intergenic Intergenic 121507 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 525-21 chr5 166773106 166773381 + 2.5 NA Intergenic MIRb|SINE|MIR 153127 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 771.5-4 chr5 177038295 177038856 + 2.5 NA intron (NM_001308213, intron 2 of 8) intron (NM_001308213, intron 2 of 8) 15879 NM_001308216 23567 Hs.484259 NM_012279 ENSG00000113761 ZNF346 JAZ|Zfp346 zinc finger protein 346 protein-coding 868.5-3 chr2 241777957 241778373 + 2.5 NA intron (NM_022134, intron 1 of 3) intron (NM_022134, intron 1 of 3) 1343 NM_022134 64090 Hs.632556 NM_022134 ENSG00000154252 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 894 chr16 76842309 76842767 + 2.5 NA Intergenic L1PA15|LINE|L1 -26398 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 439-12 chr4 72645383 72645637 + 2.5 NA Intergenic Intergenic -76289 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 489.5-14 chr3 95434251 95434687 + 2.5 NA Intergenic Intergenic 248724 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 752-2 chr18 1677135 1677661 + 2.5 NA Intergenic L2b|LINE|L2 -317769 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 624.5-10 chr4 30775918 30776421 + 2.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 55800 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 379-15 chr14 81189031 81189247 + 2.5 NA intron (NM_015859, intron 7 of 8) L1ME3E|LINE|L1 13695 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 272.5-24 chr22 28153492 28153668 + 2.5 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -232968 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 952.5 chr12 82143727 82144273 + 2.5 NA Intergenic Intergenic 190281 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 456.5-8 chr18 65243955 65244234 + 2.5 NA Intergenic Intergenic -506158 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 613.5-3 chr12 126215029 126215631 + 2.5 NA Intergenic AluJr|SINE|Alu 119338 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 750.5-8 chr6 43206575 43206996 + 2.5 NA intron (NM_015089, intron 26 of 40) L1M5|LINE|L1 22696 NM_199184 10591 Hs.109752 NM_006443 ENSG00000112667 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 707.5-2 chr19 40371746 40372148 + 2.5 NA intron (NM_001031696, intron 9 of 12) intron (NM_001031696, intron 9 of 12) 2101 NR_106854 102465477 NR_106854 ENSG00000275652 MIR6796 hsa-mir-6796 microRNA 6796 ncRNA 652.5-8 chrX 97868983 97869253 + 2.5 NA Intergenic Intergenic -304583 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 552.5-20 chr8 122383447 122383835 + 2.5 NA Intergenic L1MC1|LINE|L1 185003 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 547-12 chr20 40645896 40646410 + 2.5 NA Intergenic L1ME2z|LINE|L1 43083 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 534 chr10 33565178 33565539 + 2.5 NA Intergenic L1ME4c|LINE|L1 207322 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 484.5-13 chr2 121939892 121940216 + 2.5 NA Intergenic MIRb|SINE|MIR 184403 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 383.5-23 chr8 83894864 83895129 + 2.5 NA Intergenic Intergenic -287791 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 380-12 chr3 170910552 170910763 + 2.5 NA Intergenic Intergenic -2020 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 577.5-3 chr1 187867676 187868031 + 2.5 NA Intergenic Intergenic 424225 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 498-11 chr15 68047669 68048061 + 2.5 NA Intergenic MER21C|LTR|ERVL -6314 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 287-21 chr2 123181342 123181476 + 2.5 NA Intergenic L1MA2|LINE|L1 -107928 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 568.5-2 chr12 111560014 111560286 + 2.5 NA intron (NM_001310121, intron 1 of 25) L1M4b|LINE|L1 39165 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 318 chr1 68283747 68284092 + 2.5 NA Intergenic Intergenic -51373 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 399.5-20 chr4 45098314 45098661 + 2.5 NA Intergenic MIRb|SINE|MIR -371853 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 834.5-2 chr1 224224137 224224543 + 2.5 NA intron (NR_110668, intron 2 of 2) intron (NR_110668, intron 2 of 2) 4727 NR_110668 101927164 Hs.710128 NR_110668 ENSG00000237101 LOC101927164 - uncharacterized LOC101927164 ncRNA 475-22 chr22 34737235 34737524 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 260537 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 450.5-4 chr14 51810379 51810808 + 2.5 NA Intergenic AluJb|SINE|Alu -50019 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 539.5-22 chrX 126487433 126487911 + 2.5 NA Intergenic AluSx1|SINE|Alu 65142 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 440.5-8 chr11 95493517 95494001 + 2.5 NA Intergenic MER2|DNA|TcMar-Tigger -261284 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 654.5-3 chr2 1692653 1693005 + 2.5 NA intron (NM_012293, intron 2 of 22) intron (NM_012293, intron 2 of 22) 51686 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 615-18 chrX 43628525 43628854 + 2.5 NA Intergenic L1ME4c|LINE|L1 -26218 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 586-4 chr12 19011756 19012094 + 2.5 NA Intergenic L1PB4|LINE|L1 -117808 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 637-17 chrX 80132696 80133156 + 2.5 NA Intergenic MIRb|SINE|MIR 109866 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 191.5-21 chr6 135247335 135247483 + 2.5 NA Intergenic Tigger7|DNA|TcMar-Tigger 8249 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 624.5-4 chr12 34634825 34635310 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 612571 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 409-10 chr18 5179578 5179903 + 2.5 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 17517 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 256-32 chr8 85465931 85466125 + 2.5 NA intron (NM_001293675, intron 2 of 5) intron (NM_001293675, intron 2 of 5) -1113 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 511-19 chr5 66000896 66001250 + 2.5 NA intron (NM_001253697, intron 4 of 25) intron (NM_001253697, intron 4 of 25) -55500 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 425.5-17 chr5 14495214 14495511 + 2.5 NA intron (NM_007118, intron 49 of 56) Tigger1|DNA|TcMar-Tigger 31379 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 554.5-12 chr5 64577498 64577829 + 2.5 NA intron (NM_001271891, intron 1 of 3) intron (NM_001271891, intron 1 of 3) 2013 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 524-8 chr18 12899017 12899319 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL -14833 NM_080422 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 392.5-24 chr5 30857935 30858171 + 2.5 NA Intergenic Intergenic -335633 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 448.5-18 chr5 178385955 178386219 + 2.5 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -153265 NR_103508 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 548.5-14 chr3 151309967 151310339 + 2.5 NA intron (NM_023915, intron 1 of 2) Charlie8|DNA|hAT-Charlie 6667 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 429.5 chr1 55826287 55826546 + 2.5 NA Intergenic LTR16D|LTR|ERVL 118547 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 503-18 chr3 113960948 113961208 + 2.5 NA non-coding (NR_135271, exon 7 of 7) non-coding (NR_135271, exon 7 of 7) 13065 NM_001320468 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 329-8 chr12 24184625 24184850 + 2.5 NA intron (NM_152989, intron 4 of 17) L3|LINE|CR1 -27684 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 475-5 chr14 23408783 23409019 + 2.5 NA promoter-TSS (NM_002471) promoter-TSS (NM_002471) -624 NM_002471 4624 Hs.278432 NM_002471 ENSG00000197616 MYH6 ASD3|CMD1EE|CMH14|MYHC|MYHCA|SSS3|alpha-MHC myosin heavy chain 6 protein-coding 269-20 chr2 24682668 24682969 + 2.5 NA intron (NM_001362950, intron 7 of 23) L2c|LINE|L2 98341 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 310.5-8 chr11 42607286 42607483 + 2.5 NA Intergenic L1MC5|LINE|L1 -353694 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 565.5-17 chr8 138688802 138689066 + 2.5 NA exon (NM_152888, exon 37 of 65) exon (NM_152888, exon 37 of 65) -191204 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 297.5-2 chr1 49295718 49296048 + 2.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 38472 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 663-3 chr1 207580639 207581163 + 2.5 NA intron (NM_000573, intron 23 of 38) intron (NM_000573, intron 23 of 38) -64232 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 696-11 chr4 184193655 184194038 + 2.5 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 24027 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 297-15 chr2 65908507 65908630 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 449760 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 467.5-3 chr10 125777738 125778162 + 2.5 NA Intergenic Intergenic -2129 NM_147191 118856 Hs.314141 NM_147191 ENSG00000154485 MMP21 HTX7|MMP-21 matrix metallopeptidase 21 protein-coding 699.5-4 chr12 10284511 10284826 + 2.5 NA intron (NM_001351060, intron 2 of 8) MER46C|DNA|TcMar-Tigger -19778 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 558-19 chr7 7654565 7655151 + 2.5 NA intron (NM_002947, intron 4 of 7) AluSx1|SINE|Alu 14106 NM_001302349 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 395-18 chr2 171082988 171083315 + 2.5 NA intron (NM_012290, intron 2 of 20) intron (NM_012290, intron 2 of 20) -16178 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 481.5-8 chr22 46812651 46812903 + 2.5 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 38850 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 496.5-11 chr3 28567016 28567275 + 2.5 NA Intergenic Intergenic -8133 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 782-2 chr6 131424114 131424564 + 2.5 NA Intergenic Intergenic -148887 NR_160934 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 462.5-9 chr17 54901867 54902209 + 2.5 NA intron (NM_001321174, intron 1 of 13) L2b|LINE|L2 1186 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 318.5-28 chr5 153237054 153237316 + 2.5 NA Intergenic L2c|LINE|L2 -253339 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 314.5-28 chr5 132719868 132720136 + 2.5 NA intron (NM_007054, intron 5 of 16) intron (NM_007054, intron 5 of 16) 17544 NM_001300792 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 520-18 chr3 111418172 111418489 + 2.5 NA Intergenic Intergenic -123867 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 256-28 chr5 172746883 172747095 + 2.5 NA Intergenic Intergenic -8514 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 589.5-4 chr16 74689299 74689622 + 2.5 NA intron (NM_152649, intron 4 of 10) L1MB7|LINE|L1 11402 NM_152649 197259 Hs.119878 NM_152649 ENSG00000168404 MLKL hMLKL mixed lineage kinase domain like pseudokinase protein-coding 266.5-12 chr17 69519710 69519838 + 2.5 NA intron (NM_001330450, intron 5 of 11) intron (NM_001330450, intron 5 of 11) 17512 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 598.5-6 chr2 149526074 149526343 + 2.5 NA Intergenic Intergenic -61150 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 492.5-7 chr14 82542825 82543158 + 2.5 NA Intergenic Intergenic -99641 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 408.5-12 chr2 99214576 99214852 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR 33530 NM_145212 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 512.5-13 chrX 80236095 80236462 + 2.5 NA intron (NR_110646, intron 5 of 5) MER50-int|LTR|ERV1 99040 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 311.5-8 chr10 57297287 57297485 + 2.5 NA Intergenic L1MD|LINE|L1 7173 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 452-6 chr11 46427173 46427480 + 2.5 NA intron (NM_001267782, intron 16 of 19) (CAG)n|Simple_repeat|Simple_repeat -24481 NR_036118 100422825 NR_036118 ENSG00000283497 MIR3160-2 mir-3160-2 microRNA 3160-2 ncRNA 278-4 chr1 147839584 147839742 + 2.5 NA Intergenic L2|LINE|L2 -63132 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 338-18 chr2 69035503 69035647 + 2.5 NA intron (NM_032208, intron 1 of 17) LTR89|LTR|ERVL? 22431 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 330-46 chrX 71919308 71919548 + 2.5 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 8340 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 584-19 chr9 128489196 128489464 + 2.5 NA intron (NM_153433, intron 14 of 20) L1ME3|LINE|L1 -15362 NM_001003722 2733 Hs.522418 NM_001499 ENSG00000119392 GLE1 CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1 GLE1 RNA export mediator protein-coding 1136.5 chr10 56402753 56403435 + 2.5 NA Intergenic Intergenic -41821 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 476-7 chr10 62940943 62941289 + 2.5 NA Intergenic L4_C_Mam|LINE|RTE-X -121949 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 464.5-22 chr8 102939606 102939925 + 2.5 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) 75494 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 457.5-11 chr19 15325500 15325703 + 2.5 NA intron (NM_001330384, intron 1 of 11) intron (NM_001330384, intron 1 of 11) 6938 NM_001330384 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 665-11 chr7 12320139 12320519 + 2.5 NA Intergenic Intergenic 83536 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 261.5-16 chr15 94896733 94896945 + 2.5 NA Intergenic Intergenic 41476 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 454.5-20 chr6 50785902 50786199 + 2.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -32821 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 372-39 chr9 36126194 36126481 + 2.5 NA Intergenic Intergenic -10199 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 581-6 chr17 28982797 28983340 + 2.5 NA intron (NM_001290202, intron 1 of 16) MIRb|SINE|MIR 22965 NM_001098635 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 426.5-12 chr18 5479527 5479847 + 2.5 NA intron (NM_001281535, intron 4 of 21) intron (NM_001281535, intron 4 of 21) 60869 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 690.5-3 chr18 73934288 73934649 + 2.5 NA Intergenic Intergenic 213366 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 447.5-13 chr20 7561220 7561463 + 2.5 NA Intergenic L1MA4A|LINE|L1 189733 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 715.5-6 chr3 75972267 75972681 + 2.5 NA Intergenic Intergenic -186925 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 940.5-2 chr8 52825535 52825996 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie -111299 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 460.5-18 chr2 241198721 241199045 + 2.5 NA intron (NM_001370694, intron 4 of 24) intron (NM_001370694, intron 4 of 24) 10206 NM_001001666 50636 Hs.163909 NM_001001666 ENSG00000146205 ANO7 D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G anoctamin 7 protein-coding 402-37 chr8 88580490 88580808 + 2.5 NA Intergenic Intergenic -253166 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 399-29 chr4 61305174 61305333 + 2.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 103081 NM_001371342 341-26 chr4 156207833 156208173 + 2.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -254137 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 394.5-11 chr18 3645474 3645765 + 2.5 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 41882 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 681.5-5 chr4 35455986 35456475 + 2.5 NA Intergenic L1PA16|LINE|L1 787709 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 547.5-8 chr3 116235805 116236035 + 2.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -124104 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 500.5-2 chr11 37620117 37620398 + 2.5 NA Intergenic Intergenic -318344 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 368-44 chr8 38687587 38687828 + 2.5 NA Intergenic AluJo|SINE|Alu -40479 NR_148053 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 633-2 chr16 14205420 14205728 + 2.5 NA intron (NM_001365411, intron 1 of 14) intron (NM_001365411, intron 1 of 14) 18888 NM_001365416 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 476-30 chr6 93092201 93092470 + 2.5 NA Intergenic Intergenic 327224 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 636.5-5 chr4 110694254 110694706 + 2.5 NA Intergenic L1MCc|LINE|L1 -52357 NM_001204398 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 554-27 chr8 119039818 119040116 + 2.5 NA intron (NM_001324095, intron 3 of 7) MLT1D|LTR|ERVL-MaLR -27280 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 454.5-21 chr6 50878365 50878734 + 2.5 NA Intergenic Intergenic 59678 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 437.5-10 chr5 101301617 101301902 + 2.5 NA Intergenic MIRc|SINE|MIR -398477 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 235-25 chr3 175758663 175758795 + 2.5 NA intron (NM_207015, intron 13 of 13) intron (NM_207015, intron 13 of 13) 17604 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 484-23 chr2 178410848 178411161 + 2.5 NA Intergenic L1MB2|LINE|L1 -2655 NR_110204 101927027 Hs.715694 NR_110204 ENSG00000223960 CHROMR CHROME|PRKRA-AS1 cholesterol induced regulator of metabolism RNA ncRNA 498.5-15 chr5 168469188 168469464 + 2.5 NA 3' UTR (NM_015238, exon 23 of 23) 3' UTR (NM_015238, exon 23 of 23) -17145 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 324.5-26 chr3 6299840 6300021 + 2.5 NA Intergenic Intergenic 505519 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 314.5-22 chr20 53143083 53143251 + 2.5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -42116 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 412-22 chr3 174385916 174386139 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -465231 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 416.5-4 chr10 76834476 76834655 + 2.5 NA Intergenic Intergenic -53479 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 407-17 chr2 11581175 11581488 + 2.5 NA intron (NM_014668, intron 7 of 32) MIRb|SINE|MIR 38645 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 615.5-8 chr3 99490271 99490621 + 2.5 NA Intergenic L1MA1|LINE|L1 -148148 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 616.5-4 chr10 101760883 101761354 + 2.5 NA Intergenic Intergenic 14996 NM_033163 2253 Hs.57710 NM_006119 ENSG00000107831 FGF8 AIGF|FGF-8|HBGF-8|HH6|KAL6 fibroblast growth factor 8 protein-coding 411.5-5 chr10 76517217 76517498 + 2.5 NA intron (NM_001305581, intron 6 of 6) L1MEd|LINE|L1 -370687 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 775-4 chr4 41615335 41615815 + 2.5 NA intron (NM_001330786, intron 4 of 22) intron (NM_001330786, intron 4 of 22) 2673 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 385.5-36 chr4 119284608 119284833 + 2.5 NA intron (NM_001371398, intron 16 of 16) L1MB4|LINE|L1 15925 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 217-14 chr2 21121223 21121352 + 2.5 NA Intergenic L1MA4|LINE|L1 -2699 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 385-32 chr5 78927678 78927955 + 2.5 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 57494 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 203-12 chr2 79751428 79751509 + 2.5 NA intron (NM_001282598, intron 3 of 17) AluSz|SINE|Alu -102109 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 554.5-2 chr1 40734842 40735177 + 2.5 NA intron (NM_001142590, intron 6 of 14) L3|LINE|CR1 -3827 NM_001308114 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 176.5-15 chr20 61285679 61285769 + 2.5 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 33463 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 409.5-19 chr4 72922511 72922768 + 2.5 NA Intergenic L1M1|LINE|L1 147077 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 222.5-10 chr2 30114756 30114880 + 2.5 NA Intergenic LTR29|LTR|ERV1 -32189 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 223.5-32 chr6 40123204 40123293 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -188786 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 297.5-30 chr5 112648663 112648817 + 2.5 NA Intergenic Intergenic 20304 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 245-35 chr6 131434111 131434244 + 2.5 NA Intergenic L1PA17|LINE|L1 -139049 NR_160934 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 597-22 chr6 134982295 134982893 + 2.5 NA intron (NM_006620, intron 12 of 17) intron (NM_006620, intron 12 of 17) -3162 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 240.5-11 chr2 229287569 229287715 + 2.5 NA Intergenic L1MC5a|LINE|L1 -16355 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 240-4 chr1 185060628 185060788 + 2.5 NA intron (NM_007212, intron 1 of 6) intron (NM_007212, intron 1 of 6) 15150 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 291-22 chr6 48427295 48427461 + 2.5 NA Intergenic Intergenic -358689 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 292.5-27 chr6 11423372 11423525 + 2.5 NA Intergenic Intergenic -41100 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 435-25 chr4 104498287 104498502 + 2.5 NA intron (NR_125926, intron 1 of 9) MLT1J1|LTR|ERVL-MaLR -3500 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 475.5-5 chr13 38507515 38507866 + 2.5 NA Intergenic Intergenic -60034 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 285.5-17 chr4 81874384 81874578 + 2.5 NA Intergenic Intergenic -402574 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 374 chr1 165491209 165491444 + 2.5 NA intron (NR_026744, intron 5 of 6) intron (NR_026744, intron 5 of 6) -45971 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 336.5-23 chr6 95674581 95674760 + 2.5 NA Intergenic Intergenic 97135 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 647.5-3 chr17 58279350 58279692 + 2.5 NA intron (NM_000250, intron 4 of 11) CpG-11473 1414 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 398.5-11 chr2 84571910 84572069 + 2.5 NA intron (NM_001370, intron 11 of 76) L1MC4|LINE|L1 55534 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 335-3 chr10 23042022 23042278 + 2.5 NA Intergenic MIR|SINE|MIR -53429 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 554-10 chr14 53843085 53843330 + 2.5 NA Intergenic Intergenic 105277 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 351-19 chr2 25617254 25617498 + 2.5 NA intron (NM_033147, intron 4 of 19) intron (NM_033147, intron 4 of 19) 32846 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 454.5-7 chr18 1309048 1309616 + 2.5 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 50297 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 382-32 chr3 129110077 129110313 + 2.5 NA intron (NM_001204890, intron 11 of 12) intron (NM_001204890, intron 11 of 12) 11609 NM_001204887 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 256.5-23 chr3 74484005 74484129 + 2.5 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 37073 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 354.5-25 chr3 61869930 61870199 + 2.5 NA intron (NM_002841, intron 2 of 29) MLT1A0|LTR|ERVL-MaLR 308493 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 409-22 chr3 114511540 114511778 + 2.5 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 58066 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 939-2 chr14 66077945 66078744 + 2.5 NA Intergenic Intergenic -408027 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 440-35 chr7 16958284 16958552 + 2.5 NA Intergenic L1PA14|LINE|L1 -76435 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 413-32 chr4 111755842 111756213 + 2.5 NA Intergenic Intergenic -389427 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 469-25 chr8 125994645 125994982 + 2.5 NA Intergenic LTR71B|LTR|ERV1 -43616 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 454.5-16 chr5 120105510 120105700 + 2.5 NA Intergenic Intergenic -358673 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 536.5 chr1 71080313 71080536 + 2.5 NA promoter-TSS (NR_046217) promoter-TSS (NR_046217) 611 NM_005455 9406 Hs.194718 NM_005455 ENSG00000132485 ZRANB2 ZIS|ZIS1|ZIS2|ZNF265 zinc finger RANBP2-type containing 2 protein-coding 875 chr10 10802394 10802775 + 2.5 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 3859 NM_001326327 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 347.5-28 chr8 9107309 9107483 + 2.5 NA Intergenic L1MEd|LINE|L1 43262 NM_024607 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 373.5-6 chr12 18485831 18486102 + 2.5 NA intron (NM_001288774, intron 18 of 32) L3b|LINE|CR1 224426 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 430.5 chr1 44593614 44593858 + 2.5 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 48243 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 378.5-6 chr10 76999686 76999975 + 2.5 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 111786 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 616.5-8 chr2 7548652 7549161 + 2.5 NA Intergenic L1MEg1|LINE|L1 127645 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 410.5-7 chr19 29958058 29958256 + 2.5 NA intron (NR_045557, intron 1 of 9) L1MEg|LINE|L1 15918 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 339.5-8 chr12 12635243 12635490 + 2.5 NA intron (NM_001310, intron 1 of 3) AluJb|SINE|Alu 23490 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 423-24 chr3 31652982 31653332 + 2.5 NA Intergenic L1MA4A|LINE|L1 -51056 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 314.5-38 chrX 56981510 56981671 + 2.5 NA intron (NR_027139, intron 3 of 4) intron (NR_027139, intron 3 of 4) 13951 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 515.5-2 chr10 118751624 118751970 + 2.5 NA intron (NM_153810, intron 1 of 8) L1M5|LINE|L1 3173 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 387.5-4 chr12 45918735 45919069 + 2.5 NA TTS (NM_004719) TTS (NM_004719) 71672 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 446-37 chr8 143181413 143181630 + 2.5 NA Intergenic L1MC5a|LINE|L1 -20867 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 610-10 chr22 29034692 29035134 + 2.5 NA intron (NM_001206998, intron 2 of 8) L2a|LINE|L2 -3437 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 601.5-15 chr9 89831344 89831633 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -137928 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 308-3 chr10 21985540 21985839 + 2.5 NA intron (NM_022365, intron 1 of 11) L1MB7|LINE|L1 18041 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 418.5-4 chr1 217509054 217509374 + 2.5 NA intron (NM_018040, intron 6 of 9) AluSz|SINE|Alu 121876 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 261.5-25 chr3 110418599 110418711 + 2.5 NA Intergenic L1PA16|LINE|L1 651304 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 293-21 chr4 31600712 31600905 + 2.5 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat 94264 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 363-8 chr11 58926386 58926573 + 2.5 NA intron (NM_001354699, intron 2 of 7) HERVK22-int|LTR|ERVK -1150 NM_001220494 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 607-5 chr10 41827108 41827497 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 540743 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 544-3 chr1 229768337 229768838 + 2.5 NA Intergenic L2b|LINE|L2 117231 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 502.5-7 chr2 223856855 223857279 + 2.5 NA Intergenic AluJb|SINE|Alu -19485 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 375-24 chr5 25758880 25759113 + 2.5 NA Intergenic PRIMA41-int|LTR|ERV1 568043 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 385-15 chr17 65769376 65769749 + 2.5 NA intron (NM_001353129, intron 21 of 26) L1M2a|LINE|L1 56889 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 186.5-29 chr8 68484973 68485149 + 2.5 NA intron (NR_146186, intron 4 of 12) intron (NR_146186, intron 4 of 12) -153570 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 464.5-20 chr7 101104747 101105063 + 2.5 NA Intergenic Intergenic 19424 NM_030961 81844 Hs.521092 NM_030961 ENSG00000169871 TRIM56 RNF109 tripartite motif containing 56 protein-coding 421-29 chr5 60595673 60595958 + 2.5 NA Intergenic L1MEd|LINE|L1 -99529 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 851.5-4 chr6 143738859 143739434 + 2.5 NA intron (NM_001100165, intron 2 of 11) AluY|SINE|Alu 61181 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 395.5-21 chr22 20728369 20728615 + 2.5 NA intron (NM_058004, intron 39 of 54) intron (NM_058004, intron 39 of 54) 27378 NR_026815 84222 Hs.546454 NM_032262 ENSG00000226287 TMEM191A TMEM191AP transmembrane protein 191A (pseudogene) pseudo 416.5-11 chr15 44948022 44948439 + 2.5 NA Intergenic ERVL-B4-int|LTR|ERVL -8457 NM_152448 145645 Hs.567701 NM_152448 ENSG00000167014 TERB2 C15orf43 telomere repeat binding bouquet formation protein 2 protein-coding 734-3 chr2 191674406 191674823 + 2.5 NA Intergenic Intergenic -3458 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 291-14 chr2 20218063 20218366 + 2.5 NA intron (NM_001006946, intron 2 of 5) MIR3|SINE|MIR 6916 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 268-26 chr8 54961052 54961260 + 2.5 NA Intergenic Intergenic -140872 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 522-28 chr4 113156813 113157148 + 2.5 NA intron (NM_001354241, intron 2 of 45) intron (NM_001354241, intron 2 of 45) 4698 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 596-7 chr22 25830546 25831012 + 2.5 NA intron (NM_001318245, intron 15 of 43) MLT1H|LTR|ERVL-MaLR 88591 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 502.5-14 chr8 117310992 117311219 + 2.5 NA Intergenic Intergenic 176110 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 299.5-24 chr3 100505353 100505525 + 2.5 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 12820 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 862.5-6 chr7 48139498 48140119 + 2.5 NA Intergenic MER51B|LTR|ERV1 -31650 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 257.5-19 chr19 42201598 42201743 + 2.5 NA intron (NR_073052, intron 2 of 2) intron (NR_073052, intron 2 of 2) 16007 NR_073048 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 286-15 chr18 53248560 53248846 + 2.5 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 11602 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 510.5-7 chr20 23404597 23404839 + 2.5 NA intron (NM_001283026, intron 1 of 9) intron (NM_001283026, intron 1 of 9) 16770 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 386.5-16 chr22 48237705 48237922 + 2.5 NA Intergenic Intergenic -36551 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 714-4 chr3 36973602 36974007 + 2.5 NA Intergenic Intergenic 19327 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 1124 chr17 38946210 38946990 + 2.5 NA intron (NM_001008777, intron 6 of 10) intron (NM_001008777, intron 6 of 10) 20803 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 301.5-19 chr6 139603413 139603565 + 2.5 NA Intergenic Intergenic -128893 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 397.5-30 chr6 92208988 92209210 + 2.5 NA Intergenic Intergenic -518671 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 653-9 chr6 69933072 69933348 + 2.5 NA intron (NM_001858, intron 7 of 50) intron (NM_001858, intron 7 of 50) 66654 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 472-12 chr22 30463534 30463787 + 2.5 NA intron (NM_174975, intron 8 of 11) intron (NM_174975, intron 8 of 11) 8387 NM_001257382 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 477-2 chr10 67189914 67190200 + 2.5 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 177791 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 777.5-4 chr8 59616415 59616831 + 2.5 NA Intergenic Intergenic 497413 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 274-16 chr2 204689664 204689873 + 2.5 NA intron (NM_205863, intron 2 of 21) MIR|SINE|MIR 144293 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 451.5-24 chr9 92480005 92480449 + 2.5 NA intron (NM_017680, intron 1 of 8) intron (NM_017680, intron 1 of 8) 2279 NM_017680 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 671.5-5 chr6 114911609 114911967 + 2.5 NA Intergenic Intergenic 732047 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 470-6 chr11 87197529 87197754 + 2.5 NA intron (NR_033149, intron 4 of 13) intron (NR_033149, intron 4 of 13) 159707 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 260.5-15 chr18 1497223 1497361 + 2.5 NA Intergenic L1PA17|LINE|L1 -137663 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 249-17 chr2 235346207 235346328 + 2.5 NA Intergenic Intergenic -147776 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 573-16 chr6 154421322 154421576 + 2.5 NA intron (NM_001368116, intron 9 of 12) intron (NM_001368116, intron 9 of 12) 12624 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 461-18 chr4 15716441 15716690 + 2.5 NA intron (NM_004334, intron 6 of 8) intron (NM_004334, intron 6 of 8) 13500 NM_004334 683 Hs.720344 NM_004334 ENSG00000109743 BST1 CD157 bone marrow stromal cell antigen 1 protein-coding 245-7 chr10 86877991 86878142 + 2.5 NA intron (NM_004329, intron 3 of 12) intron (NM_004329, intron 3 of 12) -77693 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 327-22 chr2 14277638 14277784 + 2.5 NA intron (NR_103814, intron 2 of 3) L1PA15|LINE|L1 123247 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 408-2 chr1 99478020 99478299 + 2.5 NA intron (NR_125951, intron 2 of 2) L1PA16|LINE|L1 9645 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 499 chr1 74794450 74794797 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -61215 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 391.5-3 chr10 78742795 78743135 + 2.5 NA Intergenic MIR|SINE|MIR 324483 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 252 chr1 6347758 6347985 + 2.5 NA intron (NM_181866, intron 2 of 8) MIRc|SINE|MIR 11058 NM_181866 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 394.5-18 chr4 39208217 39208388 + 2.5 NA intron (NM_025132, intron 9 of 36) L1MEf|LINE|L1 25773 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 478-28 chr7 14724067 14724662 + 2.5 NA intron (NM_001350717, intron 5 of 24) intron (NM_001350717, intron 5 of 24) 117086 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 341-14 chr15 97606424 97606618 + 2.5 NA Intergenic L2a|LINE|L2 -45823 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 232-30 chr8 125793968 125794147 + 2.5 NA Intergenic Intergenic 157140 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 236-19 chr2 189574649 189574771 + 2.5 NA intron (NM_014585, intron 3 of 7) intron (NM_014585, intron 3 of 7) 6101 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 447.5-15 chr3 98553126 98553519 + 2.5 NA Intergenic Intergenic 21344 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 338.5-15 chr17 60063219 60063366 + 2.5 NA intron (NM_022070, intron 9 of 19) intron (NM_022070, intron 9 of 19) 15639 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 260.5-23 chr3 70770618 70770740 + 2.5 NA Intergenic L1M5|LINE|L1 294245 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 727-5 chr2 10551564 10552121 + 2.5 NA Intergenic MER50|LTR|ERV1 102114 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 379.5 chr1 12110965 12111231 + 2.5 NA intron (NM_001243, intron 6 of 14) intron (NM_001243, intron 6 of 14) 47721 NM_001281430 943 Hs.1314 NM_001243 ENSG00000120949 TNFRSF8 CD30|D1S166E|Ki-1 TNF receptor superfamily member 8 protein-coding 505-23 chr8 26146697 26147230 + 2.5 NA Intergenic Intergenic -101550 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 484-8 chr10 29115075 29115481 + 2.5 NA Intergenic Intergenic -173792 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 526-2 chr13 41256801 41257044 + 2.5 NA intron (NM_001354074, intron 2 of 9) L2c|LINE|L2 6654 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 372-19 chr16 24732627 24732921 + 2.5 NA intron (NM_014494, intron 2 of 24) MER20|DNA|hAT-Charlie 3123 NM_014494 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 394.5-12 chr2 19339114 19339271 + 2.5 NA Intergenic Intergenic -9237 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 276-16 chr16 55169624 55169851 + 2.5 NA Intergenic Intergenic -154822 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 485.5-10 chr3 58152027 58152303 + 2.5 NA intron (NM_001164318, intron 38 of 45) intron (NM_001164318, intron 38 of 45) 18470 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 347-6 chr12 120812892 120813052 + 2.5 NA intron (NM_139015, intron 1 of 10) L2b|LINE|L2 87146 NM_000017 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 472-8 chr2 37776392 37776660 + 2.5 NA Intergenic Intergenic 53185 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 548.5-5 chr15 81034443 81034767 + 2.5 NA Intergenic Intergenic 33682 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 423.5-25 chr5 176337433 176337811 + 2.5 NA intron (NM_001308200, intron 6 of 6) intron (NM_001308200, intron 6 of 6) 24142 NM_020444 57179 Hs.743257 NM_020444 ENSG00000122203 KIAA1191 p33MONOX|p60MONOX KIAA1191 protein-coding 603.5-10 chr6 10703043 10703472 + 2.5 NA intron (NM_017906, intron 4 of 9) intron (NM_017906, intron 4 of 9) 8285 NM_017906 55003 Hs.310231 NM_017906 ENSG00000111845 PAK1IP1 MAK11|PIP1|WDR84|bA421M1.5|hPIP1 PAK1 interacting protein 1 protein-coding 754-8 chr6 41236110 41236558 + 2.5 NA intron (NM_198153, intron 4 of 5) intron (NM_198153, intron 4 of 5) 7985 NM_198153 285852 Hs.434181 NM_198153 ENSG00000188056 TREML4 TLT-4|TLT4 triggering receptor expressed on myeloid cells like 4 protein-coding 426.5-26 chr7 137779419 137779780 + 2.5 NA intron (NM_001321708, intron 1 of 32) L1MEb|LINE|L1 66733 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 525-5 chr14 58932225 58932542 + 2.5 NA intron (NR_110547, intron 3 of 5) L1M2a|LINE|L1 104095 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 421.5-15 chr2 48003459 48003685 + 2.5 NA Intergenic Intergenic -97779 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 301-11 chr11 37334789 37334952 + 2.5 NA Intergenic Intergenic -603731 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 575-4 chr15 80549420 80549844 + 2.5 NA intron (NM_014862, intron 8 of 18) L1MC4a|LINE|L1 13312 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 493-12 chr17 76225309 76225570 + 2.5 NA intron (NM_052916, intron 1 of 18) intron (NM_052916, intron 1 of 18) 15054 NM_052916 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 464-17 chr3 57382691 57383222 + 2.5 NA intron (NM_001366028, intron 49 of 73) LTR67B|LTR|ERVL -90271 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 604-11 chr18 11890543 11890914 + 2.5 NA intron (NR_040241, intron 4 of 11) intron (NR_040241, intron 4 of 11) 17589 NR_040243 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 907.5 chr10 53868130 53868504 + 2.5 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -617913 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 244.5-37 chr6 81687483 81687600 + 2.5 NA Intergenic Intergenic 65140 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 477.5-11 chr12 124129177 124129417 + 2.5 NA intron (NM_001347902, intron 2 of 4) AluJb|SINE|Alu 156082 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 374.5-9 chr14 63910810 63911057 + 2.5 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 57929 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 568-19 chr8 134523472 134523791 + 2.5 NA intron (NM_020863, intron 12 of 15) L2|LINE|L2 -74440 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 708-6 chr4 156986831 156987319 + 2.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -15276 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 339-4 chr10 80651398 80651630 + 2.5 NA intron (NR_155749, intron 1 of 2) intron (NR_155749, intron 1 of 2) 1717 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 689 chr10 32050352 32050831 + 2.5 NA intron (NM_004521, intron 1 of 25) MLT1L|LTR|ERVL-MaLR 5834 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 473-3 chr10 81987685 81987914 + 2.5 NA intron (NR_163253, intron 2 of 10) Charlie9|DNA|hAT-Charlie 110112 NR_163252 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 468-4 chr11 65250738 65251075 + 2.5 NA Intergenic Intergenic -11056 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 306-29 chr7 52417283 52417623 + 2.5 NA Intergenic Intergenic -618180 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 551-26 chr5 131610556 131610841 + 2.5 NA intron (NM_016340, intron 1 of 27) ERV3-16A3_I-int|LTR|ERVL 24531 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 921-5 chr8 142425817 142426425 + 2.5 NA Intergenic (CATGTG)n|Simple_repeat|Simple_repeat -22939 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 368.5-21 chr3 63881140 63881393 + 2.5 NA intron (NM_000333, intron 1 of 12) intron (NM_000333, intron 1 of 12) 16709 NM_000333 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 277.5-29 chr6 64673700 64673824 + 2.5 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -627656 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 503.5-3 chr10 72125663 72125929 + 2.5 NA intron (NM_001369103, intron 8 of 9) L2c|LINE|L2 -36764 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 681-2 chr3 162965575 162965932 + 2.5 NA Intergenic Intergenic 337548 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 786-4 chr18 50775136 50775511 + 2.5 NA Intergenic MER61A|LTR|ERV1 44693 NM_001127175 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 349-25 chr3 123660770 123660962 + 2.5 NA intron (NM_001321309, intron 22 of 32) intron (NM_001321309, intron 22 of 32) -28778 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 632 chr1 95080334 95080707 + 2.5 NA Intergenic L2a|LINE|L2 -7569 NM_144988 199857 Hs.408927 NM_144988 ENSG00000172339 ALG14 CMS15 ALG14 UDP-N-acetylglucosaminyltransferase subunit protein-coding 428-11 chr16 12653342 12653909 + 2.5 NA Intergenic AluSx|SINE|Alu -66696 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 445-12 chr2 73713979 73714286 + 2.5 NA Intergenic L1MB5|LINE|L1 -12792 NR_132338 51471 Hs.278983 NM_016347 ENSG00000204872 NAT8B CML2|Hcml2|NAT8BP N-acetyltransferase 8B (putative, gene/pseudogene) protein-coding 441-10 chr13 106293787 106294059 + 2.5 NA Intergenic AluJo|SINE|Alu -82641 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 321-21 chr5 14299841 14299994 + 2.5 NA intron (NM_007118, intron 7 of 56) intron (NM_007118, intron 7 of 56) 156575 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 401.5-33 chr9 27396737 27397006 + 2.5 NA intron (NM_024761, intron 2 of 3) MIR3|SINE|MIR -99721 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 399.5 chr1 17788763 17789060 + 2.5 NA intron (NM_030812, intron 1 of 2) intron (NM_030812, intron 1 of 2) 33578 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 503-14 chr2 38161762 38162127 + 2.5 NA intron (NR_027252, intron 2 of 2) intron (NR_027252, intron 2 of 2) 30839 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 347-16 chr3 68857262 68857555 + 2.5 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 75139 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 509-17 chr5 16153100 16153621 + 2.5 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 26431 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 313.5-26 chr3 6067361 6067555 + 2.5 NA Intergenic MER5C|DNA|hAT-Charlie 737991 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 330-6 chr10 27632618 27632806 + 2.5 NA Intergenic L1ME3|LINE|L1 -111903 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 552-11 chr19 36937249 36937636 + 2.5 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 21110 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 482-14 chr3 94866789 94867009 + 2.5 NA Intergenic L1PA13|LINE|L1 -71364 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 363-6 chr10 92015663 92015825 + 2.5 NA intron (NM_003972, intron 32 of 37) intron (NM_003972, intron 32 of 37) 91974 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 590.5-2 chr1 60554656 60555104 + 2.5 NA intron (NR_146508, intron 4 of 7) L1ME1|LINE|L1 67805 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 489.5-10 chr2 144072326 144072535 + 2.5 NA intron (NM_001354355, intron 7 of 13) MIR3|SINE|MIR 135363 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 314.5-26 chr4 44651324 44651511 + 2.5 NA intron (NM_182592, intron 1 of 5) intron (NM_182592, intron 1 of 5) 224 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 736-5 chr14 70927438 70927889 + 2.5 NA intron (NM_014982, intron 1 of 35) AluSz|SINE|Alu 20204 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 654.5-4 chr3 151252331 151252864 + 2.5 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) -3606 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 413-13 chr15 46017782 46018077 + 2.5 NA Intergenic LTR16B1|LTR|ERVL 312734 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 573.5-12 chr9 71032712 71032978 + 2.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 88776 NM_001366146 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 639.5-6 chr4 53601631 53601959 + 2.5 NA intron (NR_046827, intron 1 of 1) intron (NR_046827, intron 1 of 1) 8839 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 603.5-7 chr3 108345096 108345494 + 2.5 NA intron (NM_001370244, intron 2 of 9) intron (NM_001370244, intron 2 of 9) 33510 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 283.5-3 chr10 72963580 72963729 + 2.5 NA Intergenic L1MA2|LINE|L1 -8848 NM_001318125 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 432.5-7 chr15 76814842 76815090 + 2.5 NA intron (NR_148227, intron 5 of 32) L1MA9|LINE|L1 46978 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 664.5-15 chr8 129164363 129164763 + 2.5 NA Intergenic Intergenic 76677 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 584-5 chr13 26821264 26821538 + 2.5 NA Intergenic Intergenic -60615 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 542.5-14 chr20 54032472 54032827 + 2.5 NA intron (NM_001366297, intron 3 of 8) L1PA13|LINE|L1 26371 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 336.5-13 chr20 55387786 55387920 + 2.5 NA Intergenic Intergenic -35190 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 436-10 chr15 85770196 85770481 + 2.5 NA TTS (NR_031682) TTS (NR_031682) 240 NR_031682 100302121 NR_031682 ENSG00000221634 MIR1276 MIRN1276|hsa-mir-1276|mir-1276 microRNA 1276 ncRNA 358.5 chr1 4914097 4914348 + 2.5 NA Intergenic Intergenic 259613 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 337-21 chr4 42123889 42124060 + 2.5 NA intron (NM_207406, intron 4 of 5) intron (NM_207406, intron 4 of 5) 28681 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 384-8 chr13 57528061 57528312 + 2.5 NA Intergenic Intergenic -103558 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 264.5-5 chr10 6349538 6349754 + 2.5 NA promoter-TSS (NR_148966) promoter-TSS (NR_148966) -670 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 339-19 chr2 210597411 210597594 + 2.5 NA intron (NR_163592, intron 3 of 27) MIRc|SINE|MIR 4147 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 394.5-19 chr4 56262342 56262598 + 2.5 NA intron (NM_020722, intron 2 of 10) MER30|DNA|hAT-Charlie 92275 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 375.5-9 chr14 64502209 64502430 + 2.5 NA intron (NM_001354686, intron 3 of 5) intron (NM_001354686, intron 3 of 5) 1519 NM_006977 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 448-23 chr20 53889214 53889593 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -13694 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 430.5-4 chr1 166595994 166596264 + 2.5 NA Intergenic Intergenic -7787 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 302-38 chr9 136233024 136233144 + 2.5 NA intron (NM_181701, intron 1 of 11) Tigger2|DNA|TcMar-Tigger 12757 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding 578-2 chr10 9039156 9039419 + 2.5 NA Intergenic Intergenic 141298 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 628.5-10 chr7 64387684 64388074 + 2.5 NA Intergenic Intergenic -45814 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 486-26 chr20 62415397 62415639 + 2.5 NA intron (NM_080833, intron 8 of 13) intron (NM_080833, intron 8 of 13) -8235 NM_031215 81928 Hs.301040 NM_031215 ENSG00000149679 CABLES2 C20orf150|dJ908M14.2|ik3-2 Cdk5 and Abl enzyme substrate 2 protein-coding 357-18 chr18 27340646 27340887 + 2.5 NA intron (NR_134589, intron 1 of 2) intron (NR_134589, intron 1 of 2) 1890 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 420-2 chr1 67674944 67675179 + 2.5 NA Intergenic Intergenic -10140 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 351-18 chr18 8044860 8045005 + 2.5 NA intron (NM_002845, intron 7 of 30) L1MB8|LINE|L1 322102 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 312-2 chr10 85795092 85795340 + 2.5 NA intron (NM_017551, intron 8 of 15) L1M6|LINE|L1 217485 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 328.5-26 chr2 200371584 200371810 + 2.5 NA intron (NM_001282743, intron 2 of 11) intron (NM_001282743, intron 2 of 11) 62747 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 306-6 chr15 50830358 50830513 + 2.5 NA Intergenic Intergenic -64729 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 343 chr1 100037555 100037748 + 2.5 NA promoter-TSS (NM_033055) promoter-TSS (NM_033055) -444 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 576.5-3 chr12 5817103 5817371 + 2.5 NA intron (NM_001278596, intron 7 of 25) MIRb|SINE|MIR 128022 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 661-2 chr11 94369404 94370136 + 2.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 31649 NM_016540 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 500.5-3 chr11 69406768 69407102 + 2.5 NA Intergenic L1MB4|LINE|L1 -18720 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 436.5-4 chr14 60034689 60034946 + 2.5 NA intron (NR_075071, intron 29 of 32) L1MA4|LINE|L1 -57094 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 371-14 chr2 88874719 88874884 + 2.5 NA Intergenic Intergenic 62431 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 242-21 chr4 55422494 55422593 + 2.5 NA intron (NR_073070, intron 5 of 6) AluSx|SINE|Alu 26586 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 244-19 chr22 28432565 28432706 + 2.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -27234 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 296-31 chr7 120618448 120618680 + 2.5 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 239580 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 408-34 chr6 50094491 50094670 + 2.5 NA Intergenic Intergenic -44651 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 482.5 chr1 118367458 118367936 + 2.5 NA Intergenic Intergenic -182469 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 539.5-2 chr10 44332486 44332724 + 2.5 NA Intergenic Intergenic 39855 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 679.5-6 chr4 187393364 187393914 + 2.5 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 22991 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 277-49 chr8 127163455 127163685 + 2.5 NA Intergenic Intergenic 34057 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 315-31 chr5 170246648 170246842 + 2.5 NA TTS (NM_001305393) TTS (NM_001305393) 13739 NM_001305393 133874 Hs.519749 NM_001102609 ENSG00000234511 C5orf58 - chromosome 5 open reading frame 58 protein-coding 857-7 chr5 126282091 126282710 + 2.5 NA intron (NR_105039, intron 1 of 2) MIR3|SINE|MIR 2775 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 154.5-20 chr5 18058939 18059028 + 2.5 NA Intergenic Intergenic 251709 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 742.5 chr1 181331976 181332576 + 2.5 NA Intergenic L1PA11|LINE|L1 95888 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 310-23 chr2 127195045 127195272 + 2.5 NA intron (NM_001001665, intron 5 of 7) intron (NM_001001665, intron 5 of 7) 10609 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 254.5-40 chr5 104376480 104376661 + 2.5 NA Intergenic L1MC3|LINE|L1 -722904 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 261.5-29 chr7 23897662 23897842 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 187533 NR_048542 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 513-6 chr10 69376596 69376821 + 2.5 NA intron (NM_033496, intron 7 of 17) intron (NM_033496, intron 7 of 17) 40210 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 307.5 chr1 108471869 108472007 + 2.5 NA Intergenic Intergenic 21656 NM_001143988 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 486.5-19 chrX 100218982 100219301 + 2.5 NA Intergenic L2c|LINE|L2 191132 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 393-11 chr14 27324475 27324710 + 2.5 NA intron (NR_148991, intron 2 of 2) L1MC1|LINE|L1 -287996 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 427.5-16 chr2 201687663 201688106 + 2.5 NA intron (NM_033066, intron 4 of 21) intron (NM_033066, intron 4 of 21) 10760 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 627-12 chr7 53415584 53416049 + 2.5 NA Intergenic L2|LINE|L2 380183 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 279-23 chr22_KI270736v1_random 180460 180673 + 2.5 NA NA Intergenic NA NA 213.5-36 chrX 78520569 78520721 + 2.5 NA Intergenic L2c|LINE|L2 138683 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 340-32 chr5 55949706 55949884 + 2.5 NA intron (NR_157112, intron 14 of 17) (TCAT)n|Simple_repeat|Simple_repeat 45168 NM_175767 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 579.5 chr1 37556689 37557027 + 2.5 NA promoter-TSS (NM_003462) promoter-TSS (NM_003462) -82 NM_003462 7802 Hs.406050 NM_003462 ENSG00000163879 DNALI1 P28|dJ423B22.5|hp28 dynein axonemal light intermediate chain 1 protein-coding 501.5 chr1 41630459 41630716 + 2.5 NA intron (NM_001127714, intron 1 of 7) MLT1E2|LTR|ERVL-MaLR -145904 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 640-13 chr9 70831299 70831695 + 2.5 NA intron (NM_001366143, intron 5 of 25) MER105|DNA|hAT-Charlie -21413 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 356.5-12 chr12 15547662 15548031 + 2.5 NA intron (NM_030671, intron 1 of 13) intron (NM_030671, intron 1 of 13) 1235 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 368.5-15 chr15 94548316 94548588 + 2.5 NA Intergenic Intergenic 192522 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 427.5-4 chr10 63770727 63771053 + 2.5 NA Intergenic Intergenic -249000 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 504.5-2 chr11 76469936 76470215 + 2.5 NA intron (NM_001300942, intron 8 of 21) intron (NM_001300942, intron 8 of 21) 25050 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 364.5-20 chr4 75023316 75023545 + 2.5 NA intron (NM_015393, intron 2 of 3) MIR|SINE|MIR -53068 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 289-15 chr14 77564410 77564525 + 2.5 NA intron (NM_004863, intron 5 of 11) L1MC4a|LINE|L1 52300 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 331.5-9 chr14 72382952 72383181 + 2.5 NA intron (NM_001370288, intron 3 of 16) L1ME3D|LINE|L1 -133754 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 201.5-15 chr19 33357310 33357539 + 2.5 NA Intergenic Intergenic -16285 NM_001806 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 354-23 chr3 35384474 35384770 + 2.5 NA intron (NR_110817, intron 1 of 3) MIR3|SINE|MIR 9401 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 334.5-14 chr2 146973703 146973971 + 2.5 NA Intergenic Intergenic 386780 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 682 chr1 246805902 246806322 + 2.5 NA Intergenic L1ME3|LINE|L1 16495 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 527.5-3 chr14 56557813 56558331 + 2.5 NA Intergenic Intergenic -21726 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 445.5-5 chr15 82051137 82051349 + 2.5 NA Intergenic L1ME4a|LINE|L1 -5225 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 645.5-9 chr5 161649358 161649776 + 2.5 NA Intergenic L1MC3|LINE|L1 -36154 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 216.5-18 chr17 21131711 21131864 + 2.5 NA intron (NM_015510, intron 1 of 6) intron (NM_015510, intron 1 of 6) 4859 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 454-20 chr3 117242148 117242442 + 2.5 NA Intergenic Intergenic 320864 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 397-39 chr9 112183560 112183718 + 2.5 NA Intergenic Intergenic -8342 NM_001282640 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 306-27 chr6 41046693 41046874 + 2.5 NA Intergenic Intergenic 4065 NM_001159726 222642 Hs.357392 NM_001010873 ENSG00000112212 TSPO2 BZRPL1 translocator protein 2 protein-coding 635.5-2 chr11 42230118 42230484 + 2.5 NA intron (NR_038309, intron 4 of 5) L2b|LINE|L2 23389 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 407.5-11 chr18 13505339 13505643 + 2.5 NA intron (NM_181482, intron 4 of 5) Tigger6a|DNA|TcMar-Tigger 45544 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 465.5-4 chr11 36781620 36782017 + 2.5 NA Intergenic Intergenic -183539 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 381-17 chr4 92953901 92954193 + 2.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 649648 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 411-9 chr10 96730358 96730610 + 2.5 NA Intergenic L1ME3G|LINE|L1 -9970 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 515.5-11 chr5 144982118 144982428 + 2.5 NA Intergenic L1MB1|LINE|L1 776882 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 213.5-3 chr1 162713766 162713920 + 2.5 NA intron (NM_001014796, intron 3 of 18) L1ME4a|LINE|L1 -76859 NM_001304512 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 330.5-18 chr19 28636700 28636870 + 2.5 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 30097 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 224.5-32 chr8 118640935 118641090 + 2.5 NA intron (NR_038210, intron 2 of 4) L1MB8|LINE|L1 -19049 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 521-6 chr2 181592655 181593082 + 2.5 NA intron (NR_027690, intron 2 of 11) (ATG)n|Simple_repeat|Simple_repeat 64237 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 195.5-7 chr10 63498546 63498630 + 2.5 NA intron (NM_001322258, intron 1 of 24) Tigger15a|DNA|TcMar-Tigger -22813 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 309-40 chr7 6688168 6688352 + 2.5 NA TTS (NM_016265) TTS (NM_016265) 18687 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 362-28 chr6 54724514 54724673 + 2.5 NA Intergenic MIRb|SINE|MIR -122178 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 420.5-3 chr12 23044243 23044571 + 2.5 NA Intergenic Intergenic -131229 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 285-12 chr12 114449579 114449813 + 2.5 NA Intergenic Intergenic -41254 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 533-20 chr3 111465044 111465383 + 2.5 NA Intergenic Intergenic -76984 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 283-26 chr20 16362552 16362690 + 2.5 NA intron (NM_024704, intron 22 of 25) intron (NM_024704, intron 22 of 25) 210827 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 391-4 chr10 53514358 53514608 + 2.5 NA Intergenic Intergenic -742783 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 725.5-4 chr10 85293837 85294450 + 2.5 NA Intergenic L1MD2|LINE|L1 -95205 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 520.5-22 chr8 127019358 127019642 + 2.5 NA intron (NR_045262, intron 1 of 1) HSMAR1|DNA|TcMar-Mariner 6346 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 890 chr10 64992713 64993218 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -68447 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 355-2 chr1 235251639 235251921 + 2.5 NA intron (NR_135074, intron 6 of 24) intron (NR_135074, intron 6 of 24) -61664 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 467-22 chr6 121791923 121792158 + 2.5 NA Intergenic Intergenic 356394 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 277.5-33 chr8 27358589 27358762 + 2.5 NA intron (NM_173175, intron 1 of 29) L1MEd|LINE|L1 33111 NM_173175 2185 Hs.491322 NM_004103 ENSG00000120899 PTK2B CADTK|CAKB|FADK2|FAK2|PKB|PTK|PYK2|RAFTK protein tyrosine kinase 2 beta protein-coding 649-7 chr17 80131542 80132018 + 2.5 NA Intergenic L1MB7|LINE|L1 15348 NM_014740 9775 Hs.389649 NM_014740 ENSG00000141543 EIF4A3 DDX48|Fal1|MUK34|NMP265|NUK34|RCPS|eIF-4A-III|eIF4A-III|eIF4AIII eukaryotic translation initiation factor 4A3 protein-coding 243-11 chr14 77180743 77180872 + 2.5 NA promoter-TSS (NM_020431) promoter-TSS (NM_020431) -991 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 230.5-39 chr5 75615821 75616065 + 2.5 NA intron (NM_001276713, intron 1 of 13) intron (NM_001276713, intron 1 of 13) 4467 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 526-5 chr16 62714181 62714553 + 2.5 NA Intergenic L1MA10|LINE|L1 -677929 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 441-25 chr3 42010188 42010472 + 2.5 NA Intergenic LTR16E2|LTR|ERVL -48227 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 524.5-8 chr2 212944505 212944891 + 2.5 NA Intergenic Intergenic -18362 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 376-11 chr17 42629710 42630056 + 2.5 NA Intergenic Intergenic 20200 NM_001070 7283 Hs.279669 NM_001070 ENSG00000131462 TUBG1 CDCBM4|GCP-1|TUBG|TUBGCP1 tubulin gamma 1 protein-coding 482.5-17 chr8 139393499 139393815 + 2.5 NA Intergenic L1PB4|LINE|L1 309466 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 509.5-16 chr8 13795834 13796077 + 2.5 NA Intergenic Intergenic 166265 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 179.5 chr1 35157852 35157994 + 2.5 NA Intergenic Intergenic 35222 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 530-24 chr5 105508967 105509341 + 2.5 NA Intergenic Intergenic 409680 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 531.5-7 chr21 31771861 31772135 + 2.5 NA Intergenic Intergenic -39880 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 330-24 chr2 178972970 178973174 + 2.5 NA intron (NM_001316745, intron 4 of 11) intron (NM_001316745, intron 4 of 11) 77065 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 307.5-8 chr11 127706954 127707175 + 2.5 NA Intergenic L1ME3|LINE|L1 435994 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 256.5-21 chr20 51603411 51603593 + 2.5 NA intron (NM_006045, intron 27 of 27) intron (NM_006045, intron 27 of 27) -40663 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 463-22 chr5 66708231 66708522 + 2.5 NA intron (NM_001290228, intron 1 of 4) MIRc|SINE|MIR 111983 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 335.5-18 chr2 112872068 112872248 + 2.5 NA Intergenic L1MEd|LINE|L1 -35379 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 738.5 chr1 44805403 44805966 + 2.5 NA TTS (NM_001013632) TTS (NM_001013632) 1601 NM_001013632 343521 Hs.585137 NM_001013632 ENSG00000188396 TCTEX1D4 - Tctex1 domain containing 4 protein-coding 372-38 chr8 142662923 142663226 + 2.5 NA 3' UTR (NM_003724, exon 2 of 2) 3' UTR (NM_003724, exon 2 of 2) 6893 NM_001077527 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 487.5-9 chr13 100255746 100256000 + 2.5 NA intron (NM_001352612, intron 8 of 21) intron (NM_001352612, intron 8 of 21) 166780 NR_148031 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 531-24 chr4 29320005 29320289 + 2.5 NA Intergenic L1MB8|LINE|L1 105855 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 820-3 chr4 61348811 61349390 + 2.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 146928 NM_001371342 445-11 chr17 56178493 56178759 + 2.5 NA intron (NM_153228, intron 1 of 16) MER5B|DNA|hAT-Charlie 25151 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 179.5-18 chr7 20508928 20509082 + 2.5 NA Intergenic Intergenic -106662 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 321 chr1 43374160 43374299 + 2.5 NA Intergenic Intergenic -6155 NM_001256401 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 447.5-2 chr11 100802771 100803099 + 2.5 NA intron (NM_152432, intron 3 of 23) intron (NM_152432, intron 3 of 23) -114980 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 364-10 chr12 78360622 78360913 + 2.5 NA Intergenic Intergenic -1021 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 505-5 chr12 5230432 5230707 + 2.5 NA Intergenic Intergenic 12582 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 493-15 chr2 19061089 19061347 + 2.5 NA Intergenic L1M5|LINE|L1 -34247 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 373-29 chr22 29463678 29463848 + 2.5 NA Intergenic Intergenic -16455 NM_021076 4744 Hs.198760 NM_021076 ENSG00000100285 NEFH CMT2CC|NFH neurofilament heavy protein-coding 440-23 chr3 31094116 31094466 + 2.5 NA Intergenic MER110A|LTR|ERV1 67496 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 490.5-18 chr6 49498404 49498707 + 2.5 NA Intergenic Intergenic -1368 NM_001010904 389396 Hs.585172 NM_001010904 ENSG00000203972 GLYATL3 C6orf140|bA28H17.2 glycine-N-acyltransferase like 3 protein-coding 737-11 chr9 77161338 77161709 + 2.5 NA Intergenic Intergenic -15922 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 453.5-13 chr3 108270084 108270346 + 2.5 NA Intergenic Intergenic -26275 NM_001282558 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 444.5-18 chr7 66331367 66331575 + 2.5 NA intron (NM_003596, intron 3 of 5) intron (NM_003596, intron 3 of 5) 68937 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 401-28 chr5 52146460 52146760 + 2.5 NA Intergenic Intergenic 138579 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 493-3 chr12 99382167 99382371 + 2.5 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -227179 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 420-29 chr4 73022672 73022967 + 2.5 NA Intergenic Intergenic 46897 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 174-22 chr4 65957104 65957233 + 2.5 NA Intergenic L1MA5A|LINE|L1 -286673 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 351-13 chr16 84408157 84408399 + 2.5 NA intron (NM_001291454, intron 1 of 23) intron (NM_001291454, intron 1 of 23) 1690 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 572-16 chr6 37257295 37257602 + 2.5 NA promoter-TSS (NM_017772) promoter-TSS (NM_017772) 151 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 564-3 chr10 59993131 59993452 + 2.5 NA Intergenic L1MC5|LINE|L1 -32378 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 389.5-15 chr18 26067596 26067775 + 2.5 NA intron (NM_001007559, intron 3 of 10) L2|LINE|L2 22928 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 408-16 chr14 67573986 67574263 + 2.5 NA intron (NM_020715, intron 13 of 28) intron (NM_020715, intron 13 of 28) 26144 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 538.5-3 chr10 126277686 126277909 + 2.5 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 110680 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 793.5 chr20 7450655 7451248 + 2.5 NA Intergenic MER34A1|LTR|ERV1 79343 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 330.5-23 chr20 6241527 6241708 + 2.5 NA Intergenic Intergenic -118073 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 746.5-3 chr3 40052631 40053032 + 2.5 NA intron (NM_001284425, intron 3 of 15) L1ME4a|LINE|L1 -47180 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 502-12 chr20 10665165 10665507 + 2.5 NA intron (NM_000214, intron 2 of 25) intron (NM_000214, intron 2 of 25) 8663 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 478.5-9 chr2 40077346 40077602 + 2.5 NA intron (NR_038441, intron 2 of 4) MLT1K|LTR|ERVL-MaLR 159840 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 466.5-9 chr16 3863611 3863966 + 2.5 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 16332 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 365-10 chr14 76172178 76172435 + 2.5 NA 3' UTR (NM_001322027, exon 4 of 4) 3' UTR (NM_001322027, exon 4 of 4) 17952 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 853 chr3 69101619 69102060 + 2.5 NA exon (NM_006407, exon 2 of 3) exon (NM_006407, exon 2 of 3) 16902 NM_006407 10550 Hs.518060 NM_006407 ENSG00000144746 ARL6IP5 DERP11|GTRAP3-18|HSPC127|JWA|PRAF3|Yip6b|addicsin|hp22|jmx ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding 637.5-7 chr8 86417900 86418293 + 2.5 NA intron (NM_007013, intron 9 of 24) intron (NM_007013, intron 9 of 24) 75549 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 318.5-14 chr19 24355255 24355393 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -191877 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 341-7 chr12 3464035 3464241 + 2.5 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -27065 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 281-39 chr8 4431588 4431797 + 2.5 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 563222 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 388-24 chr3 110241120 110241479 + 2.5 NA Intergenic MER21-int|LTR|ERVL 638471 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 292.5-22 chr4 62078863 62079151 + 2.5 NA TTS (NM_001322402) TTS (NM_001322402) 82758 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 584-2 chr10 14182730 14183042 + 2.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 108602 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 367-36 chr8 139269231 139269417 + 2.5 NA Intergenic HERV16-int|LTR|ERVL -355283 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 583.5-9 chr3 53968829 53969288 + 2.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -77199 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 528.5-18 chr9 71220918 71221329 + 2.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -99502 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 450-16 chr6 17519460 17519677 + 2.5 NA intron (NM_006366, intron 7 of 12) intron (NM_006366, intron 7 of 12) -8303 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 440.5-18 chr5 36518968 36519275 + 2.5 NA Intergenic L1PA15|LINE|L1 -87234 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 419.5-19 chr7 5172953 5173331 + 2.5 NA Intergenic L1ME2z|LINE|L1 -17091 NM_001033518 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 764-2 chr10 123345136 123345611 + 2.5 NA Intergenic Intergenic 190971 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 491.5-9 chr16 67340604 67340804 + 2.5 NA intron (NM_018296, intron 1 of 13) intron (NM_018296, intron 1 of 13) -6651 NM_001161575 55282 Hs.125139 NM_018296 ENSG00000159708 LRRC36 RORBP70|XLHSRF2 leucine rich repeat containing 36 protein-coding 359-23 chr2 41811706 41811855 + 2.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -65775 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 295-17 chr18 13964720 13964869 + 2.5 NA Intergenic L1MA9|LINE|L1 -49087 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 304.5-29 chr3 15808387 15808564 + 2.5 NA intron (NM_015199, intron 1 of 27) intron (NM_015199, intron 1 of 27) -10291 NM_001195098 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 520-6 chr11 81744402 81744758 + 2.5 NA Intergenic LTR12C|LTR|ERV1 146256 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 370-6 chr10 94449016 94449250 + 2.5 NA intron (NM_015188, intron 2 of 12) intron (NM_015188, intron 2 of 12) 46592 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 341.5-6 chr11 94938531 94938797 + 2.5 NA Intergenic Intergenic 34892 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 418.5-34 chr9 128385310 128385540 + 2.5 NA intron (NM_030914, intron 2 of 4) L2a|LINE|L2 -7196 NR_039815 100616335 NR_039815 ENSG00000283335 MIR219B MIR2964A|hsa-mir-219b|mir-219b microRNA 219b ncRNA 502-2 chr10 18077251 18077591 + 2.5 NA Intergenic LTR37B|LTR|ERV1 -63003 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 203-23 chr5 167411410 167411575 + 2.5 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -162167 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 566-17 chr8 101418347 101418781 + 2.5 NA Intergenic Intergenic 49671 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 216.5-21 chr2 103598398 103598573 + 2.5 NA Intergenic L1PA16|LINE|L1 -614056 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 376-29 chr7 39997268 39997500 + 2.5 NA intron (NM_003718, intron 2 of 13) intron (NM_003718, intron 2 of 13) 47024 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 536.5-20 chr9 119768287 119768714 + 2.5 NA Intergenic Intergenic -166560 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 641-7 chr21 19056164 19056654 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -296597 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 678.5-5 chr5 93111392 93111697 + 2.5 NA Intergenic Intergenic 459799 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 395.5-24 chr3 134155899 134156223 + 2.5 NA Intergenic Intergenic 94683 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 359-39 chr8 135019641 135019908 + 2.5 NA Intergenic Intergenic 169839 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 254.5-27 chr2 27994890 27995102 + 2.5 NA intron (NM_199193, intron 5 of 13) LTR41C|LTR|ERVL -1371 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 668-11 chr5 17729501 17729835 + 2.5 NA Intergenic Intergenic -74030 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 553 chr1 3211976 3212233 + 2.5 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 84129 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 257-30 chr22 47107526 47107745 + 2.5 NA intron (NM_001284305, intron 11 of 12) L1ME1|LINE|L1 -191593 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 525.5-4 chr14 50568920 50569211 + 2.5 NA intron (NM_015915, intron 1 of 13) L1ME3Cz|LINE|L1 9040 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 273-26 chr3 94393855 94394022 + 2.5 NA Intergenic Intergenic 330877 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 395-35 chr7 67772345 67772749 + 2.5 NA Intergenic Intergenic -247706 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 371-8 chr17 73069353 73069668 + 2.5 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 23178 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 253-4 chr10 85967376 85967545 + 2.5 NA intron (NM_017551, intron 4 of 15) L1ME3|LINE|L1 297328 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 250.5-21 chr2 196277022 196277139 + 2.5 NA intron (NM_020760, intron 15 of 28) intron (NM_020760, intron 15 of 28) 17056 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 366-24 chr9 27963975 27964221 + 2.5 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -390232 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 358-19 chr15 62106211 62106425 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 39341 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 851.5-5 chr8 144136900 144137378 + 2.5 NA promoter-TSS (NM_016458) promoter-TSS (NM_016458) -635 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 282 chr1 15927989 15928148 + 2.5 NA intron (NM_015001, intron 10 of 14) intron (NM_015001, intron 10 of 14) 48064 NM_001324137 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 569-10 chr21 27077301 27077780 + 2.5 NA Intergenic Intergenic -110452 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 739-3 chr18 21053817 21054447 + 2.5 NA intron (NM_005406, intron 2 of 32) Cheshire|DNA|hAT-Charlie 57681 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 506-10 chr14 101738337 101738695 + 2.5 NA Intergenic UCON8|DNA|DNA 8079 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 324.5-35 chr6 105512352 105512633 + 2.5 NA Intergenic Intergenic -109410 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 437-44 chr9 119424585 119424838 + 2.5 NA Intergenic MIRb|SINE|MIR -55276 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 569.5-10 chr20 62676038 62676441 + 2.5 NA Intergenic AluJb|SINE|Alu -9618 NR_024470 100127888 Hs.671273 NR_024470 ENSG00000232803 SLCO4A1-AS1 - SLCO4A1 antisense RNA 1 ncRNA 305-22 chr2 188455097 188455299 + 2.5 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 157706 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 425.5-20 chr8 52792420 52792825 + 2.5 NA Intergenic AluJr|SINE|Alu -78156 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 474-2 chr10 73274520 73274841 + 2.5 NA non-coding (NR_038373, exon 4 of 4) non-coding (NR_038373, exon 4 of 4) 21939 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 400-2 chr1 199260847 199261093 + 2.5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 112372 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 299-29 chr6 126735032 126735242 + 2.5 NA Intergenic Intergenic 250506 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 474.5-12 chr6 38443466 38443824 + 2.5 NA intron (NM_001172418, intron 5 of 10) L2a|LINE|L2 -37951 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 466.5-20 chr6 15148080 15148311 + 2.5 NA Intergenic Intergenic -97874 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 433-35 chrX 26142043 26142322 + 2.5 NA Intergenic Intergenic 3839 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 341-8 chr12 59837854 59838111 + 2.5 NA Intergenic AluSc8|SINE|Alu 148612 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 361-5 chr10 21882377 21882674 + 2.5 NA intron (NM_022365, intron 7 of 11) intron (NM_022365, intron 7 of 11) 121205 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 462.5-13 chr20 38856278 38856650 + 2.5 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) 50767 NM_015568 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 177.5-22 chr4 115946823 115946985 + 2.5 NA Intergenic Intergenic -352821 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 435.5-7 chr20 38080941 38081188 + 2.5 NA intron (NM_021215, intron 6 of 6) L1PA15|LINE|L1 47318 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 465-30 chr3 146053465 146053702 + 2.5 NA Intergenic L1MEf|LINE|L1 15602 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 260.5-25 chr4 86383603 86383718 + 2.5 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -12793 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 463.5-6 chr12 119317708 119318108 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14528 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 356.5-37 chr7 114349469 114349717 + 2.5 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -65222 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 662.5 chr1 14968890 14969223 + 2.5 NA intron (NM_001370231, intron 3 of 8) intron (NM_001370231, intron 3 of 8) 23137 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 416-21 chr3 89738177 89738505 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 630720 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 359-5 chr10 35492362 35492563 + 2.5 NA intron (NM_181698, intron 4 of 11) MER104|DNA|TcMar-Tc2 -112879 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 300.5-20 chr2 22574245 22574433 + 2.5 NA Intergenic Intergenic 37860 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 267.5-7 chr14 62915020 62915167 + 2.5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 130365 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 457-21 chr4 68246452 68246776 + 2.5 NA promoter-TSS (NM_182502) promoter-TSS (NM_182502) -920 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 368-10 chr14 49641872 49642045 + 2.5 NA Intergenic Intergenic -6728 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 583.5-6 chr16 83257031 83257616 + 2.5 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -251023 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 319-8 chr13 89013367 89013583 + 2.5 NA Intergenic Intergenic -221816 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 429.5-13 chr2 144425625 144425841 + 2.5 NA intron (NM_014795, intron 3 of 9) intron (NM_014795, intron 3 of 9) -92664 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 334.5-13 chr2 122642411 122642623 + 2.5 NA Intergenic AluSq2|SINE|Alu 430964 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 469-10 chr17 82269880 82270224 + 2.5 NA intron (NM_001363749, intron 1 of 8) intron (NM_001363749, intron 1 of 8) 3648 NM_001893 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 542.5-12 chr2 120288063 120288295 + 2.5 NA intron (NM_001369400, intron 3 of 4) intron (NM_001369400, intron 3 of 4) 35327 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 452-20 chr3 97676992 97677302 + 2.5 NA intron (NM_001080448, intron 14 of 17) Charlie5|DNA|hAT-Charlie -87374 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 328-11 chr13 47286090 47286251 + 2.5 NA Intergenic Intergenic -389094 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 482-8 chr18 1442183 1442502 + 2.5 NA Intergenic L1M7|LINE|L1 -82713 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 444.5-16 chr5 168554904 168555239 + 2.5 NA 3' UTR (NM_024594, exon 7 of 7) 3' UTR (NM_024594, exon 7 of 7) -5833 NR_031721 100302238 NR_031721 ENSG00000283612 MIR103B1 MIR103-1AS|MIRN103-1AS|hsa-mir-103-1-as microRNA 103b-1 ncRNA 395.5-3 chr11 25639198 25639584 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -549732 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 541-5 chr14 67005650 67005968 + 2.5 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -183631 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 456-19 chr3 33649142 33649407 + 2.5 NA intron (NM_001365634, intron 7 of 35) L2a|LINE|L2 10405 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 238.5-20 chr2 133909095 133909225 + 2.5 NA Intergenic L1MEf|LINE|L1 -210775 NM_001371457 208-17 chr5 45142363 45142511 + 2.5 NA Intergenic Intergenic 333490 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 300-23 chr5 146167065 146167297 + 2.5 NA intron (NM_001317964, intron 4 of 30) L1MC4a|LINE|L1 15469 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 434.5-11 chr3 183104716 183105148 + 2.5 NA Intergenic L1ME4b|LINE|L1 -5345 NM_001293273 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 546-5 chr16 89658303 89658611 + 2.5 NA promoter-TSS (NM_002768) promoter-TSS (NM_002768) 389 NR_073516 124045 Hs.655171 NM_153025 ENSG00000167523 SPATA33 C16orf55 spermatogenesis associated 33 protein-coding 621.5-8 chr7 112297869 112298276 + 2.5 NA intron (NM_021994, intron 4 of 11) intron (NM_021994, intron 4 of 11) 91377 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 500-14 chr7 47783972 47784263 + 2.5 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) -11174 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 628-6 chr11 9015168 9015523 + 2.5 NA Intergenic Intergenic -11344 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 302-4 chr1 218181618 218181741 + 2.5 NA Intergenic MamSINE1|SINE|tRNA-RTE -103614 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 423-26 chr4 35654073 35654417 + 2.5 NA Intergenic Intergenic 589694 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 279-3 chr10 63090916 63091106 + 2.5 NA Intergenic LTR88a|LTR|Gypsy? -42236 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 271.5-39 chr7 52630998 52631116 + 2.5 NA Intergenic L1ME3B|LINE|L1 -404576 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 306.5-32 chr5 59971987 59972151 + 2.5 NA intron (NM_001165899, intron 3 of 16) MLT1N2|LTR|ERVL-MaLR -78343 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 597-15 chr20 31743836 31744153 + 2.5 NA intron (NM_012112, intron 2 of 17) AluSp|SINE|Alu 4704 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 335-21 chr19 32083974 32084174 + 2.5 NA Intergenic Intergenic 21842 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 639.5 chr14 43406541 43407211 + 2.5 NA Intergenic Intergenic 1100407 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 301.5-10 chr2 137607313 137607626 + 2.5 NA intron (NM_001316349, intron 17 of 27) L1MC4|LINE|L1 320463 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 654-8 chr2 71483408 71483802 + 2.5 NA intron (NM_001130985, intron 3 of 54) intron (NM_001130985, intron 3 of 54) 16906 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 277-31 chr21 32012520 32012846 + 2.5 NA Intergenic MSTC|LTR|ERVL-MaLR 73612 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 302-29 chr7 42789363 42789547 + 2.5 NA Intergenic Intergenic -83008 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 408.5-10 chr19 30050679 30050907 + 2.5 NA Intergenic AluJo|SINE|Alu 108554 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 719-2 chr10 125370066 125370510 + 2.5 NA Intergenic Intergenic -204083 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 468.5-10 chr4 53039004 53039334 + 2.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 176852 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 394.5-5 chr12 17683385 17683677 + 2.5 NA Intergenic Intergenic 10232 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 510-16 chr4 61250905 61251198 + 2.5 NA intron (NM_001371342, intron 1 of 20) MLT1G|LTR|ERVL-MaLR 48879 NM_001371342 378-26 chr6 159778173 159778378 + 2.5 NA TTS (NM_030752) TTS (NM_030752) 2106 NR_002960 677806 Hs.689705 NR_002960 ENSG00000207392 SNORA20 ACA20 small nucleolar RNA, H/ACA box 20 snoRNA 270-35 chr8 134799080 134799199 + 2.5 NA Intergenic Intergenic 1468 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 597.5-9 chrX 38639151 38639500 + 2.5 NA intron (NM_004615, intron 1 of 7) MIR|SINE|MIR 77847 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 494-13 chr20 51986610 51986910 + 2.5 NA Intergenic AluSx|SINE|Alu 118724 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 443-7 chr10 86449766 86450127 + 2.5 NA intron (NM_001318328, intron 15 of 18) L1MD2|LINE|L1 71838 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 356.5-27 chr22 30306767 30306948 + 2.5 NA intron (NM_001204240, intron 1 of 8) intron (NM_001204240, intron 1 of 8) -17230 NM_001037666 652968 Hs.444950 NM_001037666 ENSG00000239282 CASTOR1 GATSL3 cytosolic arginine sensor for mTORC1 subunit 1 protein-coding 538-13 chr4 128850158 128850481 + 2.5 NA intron (NM_001287442, intron 5 of 10) AluSx1|SINE|Alu 38475 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 460-20 chr5 112778279 112778566 + 2.5 NA intron (NM_001354895, intron 5 of 15) U6|snRNA|snRNA 40537 NM_001127510 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 453.5-8 chr15 74894094 74894278 + 2.5 NA intron (NM_001289156, intron 4 of 6) AluSx|SINE|Alu 4144 NM_001330372 4351 Hs.75694 NM_002435 ENSG00000178802 MPI CDG1B|PMI|PMI1 mannose phosphate isomerase protein-coding 323-23 chr4 120822360 120822608 + 2.5 NA intron (NM_001300824, intron 3 of 13) intron (NM_001300824, intron 3 of 13) 100382 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 596.5-5 chr3 5286094 5286765 + 2.5 NA Intergenic L1M1|LINE|L1 -36174 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 241.5-10 chr14 55302909 55303039 + 2.5 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 30820 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 466-14 chr15 59314215 59314574 + 2.5 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 58477 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 240.5-5 chr14 61709434 61709558 + 2.5 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 11874 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 246.5-20 chr20 39048868 39048984 + 2.5 NA Intergenic AluJr|SINE|Alu 86582 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 242.5-38 chr8 123711075 123711267 + 2.5 NA intron (NM_001003954, intron 3 of 11) L2|LINE|L2 26222 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 336.5-21 chr5 151566918 151567224 + 2.5 NA exon (NM_001447, exon 1 of 23) exon (NM_001447, exon 1 of 23) 1873 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 847.5-2 chr11 32904648 32905270 + 2.5 NA intron (NM_001076786, intron 1 of 12) L2a|LINE|L2 12148 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 567-18 chr7 21716863 21717374 + 2.5 NA intron (NM_001277115, intron 42 of 81) intron (NM_001277115, intron 42 of 81) 174079 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 650.5-8 chr2 107330964 107331239 + 2.5 NA intron (NR_049853, intron 1 of 3) L1PA16|LINE|L1 18424 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 766.5-3 chr10 72614359 72614945 + 2.5 NA intron (NM_006077, intron 1 of 11) L1MB3|LINE|L1 11427 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 359.5-39 chr9 34615424 34615616 + 2.5 NA intron (NM_001281425, intron 3 of 5) intron (NM_001281425, intron 3 of 5) -3423 NM_148179 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 466.5-27 chr9 85093075 85093481 + 2.5 NA Intergenic MER74B|LTR|ERVL 387377 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 402.5-7 chr14 88190393 88190729 + 2.5 NA intron (NM_138317, intron 5 of 6) intron (NM_138317, intron 5 of 6) 80350 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 652.5-6 chr6 36136230 36136762 + 2.5 NA exon (NM_002754, exon 6 of 12) exon (NM_002754, exon 6 of 12) 5983 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 311.5-16 chr12 20465798 20466061 + 2.5 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 96684 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 343.5-19 chr2 206629014 206629204 + 2.5 NA Intergenic Intergenic -15118 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 507-7 chr13 53127524 53127810 + 2.5 NA Intergenic Intergenic 24233 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 423.5-13 chr15 75239634 75239900 + 2.5 NA Intergenic MER57E1|LTR|ERV1 -10077 NM_001321990 105376731 NM_001321990 LOC105376731 - taste receptor cell protein 1-like protein-coding 379-38 chr7 54064717 54064877 + 2.5 NA Intergenic Intergenic -252866 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 322.5-9 chr12 131867617 131867861 + 2.5 NA Intergenic Intergenic -26883 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 529.5-15 chr2 66876665 66877069 + 2.5 NA Intergenic Intergenic -27569 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 511-29 chr9 90257830 90258067 + 2.5 NA Intergenic Intergenic 175541 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 482-12 chr2 154645849 154646095 + 2.5 NA Intergenic L1ME4b|LINE|L1 -52609 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 501.5-17 chr3 26420790 26421079 + 2.5 NA Intergenic Intergenic -201872 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 378.5-21 chr22 38225384 38225553 + 2.5 NA promoter-TSS (NR_132774) promoter-TSS (NR_132774) -748 NR_132774 106635525 NR_132774 SNORA92 - small nucleolar RNA, H/ACA box 92 snoRNA 600-20 chr6 113657445 113657729 + 2.5 NA Intergenic Intergenic -7512 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 569.5-2 chr10 70405358 70405838 + 2.5 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 1453 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 390.5-9 chr14 101605305 101605520 + 2.5 NA Intergenic Intergenic 44061 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 iodothyronine deiodinase 3 protein-coding 415-6 chr10 53959171 53959465 + 2.5 NA intron (NM_001354411, intron 24 of 34) (AC)n|Simple_repeat|Simple_repeat -526912 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 346-3 chr1 153378521 153378687 + 2.5 NA Intergenic L1PA17|LINE|L1 -2983 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 495-7 chr15 71846477 71846881 + 2.5 NA intron (NM_006901, intron 39 of 41) LTR78B|LTR|ERV1 36125 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 396.5-17 chr2 70409853 70410112 + 2.5 NA Intergenic L1MB1|LINE|L1 71658 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 769 chr10 113904564 113905097 + 2.5 NA exon (NM_198514, exon 10 of 11) exon (NM_198514, exon 10 of 11) 50169 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 392-30 chr6 146338986 146339213 + 2.5 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -204734 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 272.5-38 chr8 143940715 143940842 + 2.5 NA intron (NM_000445, intron 2 of 32) intron (NM_000445, intron 2 of 32) -1181 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 564-11 chr17 65030524 65030814 + 2.5 NA intron (NM_006572, intron 2 of 3) intron (NM_006572, intron 2 of 3) 25105 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 533.5-10 chr4 187595618 187595999 + 2.5 NA intron (NR_110436, intron 2 of 2) AluSg|SINE|Alu 76833 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 646.5-8 chr2 52328316 52328646 + 2.5 NA intron (NR_135237, intron 8 of 10) L1MA6|LINE|L1 -42167 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 599-8 chr2 79860611 79861067 + 2.5 NA intron (NM_001282598, intron 4 of 17) intron (NM_001282598, intron 4 of 17) 5744 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 773-4 chr5 28735882 28736504 + 2.5 NA Intergenic Intergenic -190677 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 252-16 chr21 26907612 26907785 + 2.5 NA Intergenic Intergenic -46263 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 417-15 chr12 95381332 95381560 + 2.5 NA Intergenic Intergenic 71523 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 614.5-5 chr18 5572410 5572885 + 2.5 NA intron (NM_001281535, intron 3 of 21) AluJr|SINE|Alu -28308 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 280-17 chr17 60233768 60233948 + 2.5 NA intron (NM_032582, intron 12 of 33) intron (NM_032582, intron 12 of 33) -2213 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 491-14 chr3 27568070 27568305 + 2.5 NA Intergenic Intergenic -83803 NM_001321106 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 478.5-11 chr20 38494814 38495122 + 2.5 NA intron (NM_001282917, intron 3 of 29) intron (NM_001282917, intron 3 of 29) -21595 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 261.5-38 chr8 128526541 128526734 + 2.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 38042 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 199-18 chr5 82468916 82469040 + 2.5 NA Intergenic Tigger12|DNA|TcMar-Tigger 189516 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 325.5-14 chr2 28131256 28131561 + 2.5 NA intron (NM_199193, intron 8 of 13) intron (NM_199193, intron 8 of 13) 75553 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 543.5-13 chr4 83858516 83859020 + 2.5 NA Intergenic Intergenic 322660 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 544-12 chr6 63091908 63092255 + 2.5 NA Intergenic L1M7|LINE|L1 227896 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 540-4 chr10 107315979 107316231 + 2.5 NA Intergenic Intergenic -151399 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 622-7 chr20 11631550 11632185 + 2.5 NA Intergenic Intergenic 238848 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 330.5-24 chr22 19701990 19702141 + 2.5 NA Intergenic L1MD1|LINE|L1 -12438 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 910-3 chr3 180758191 180759035 + 2.5 NA intron (NR_109986, intron 4 of 13) MER33|DNA|hAT-Charlie -79124 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 305.5 chr1 37066154 37066344 + 2.5 NA Intergenic L2a|LINE|L2 -31734 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 272.5 chr1 62441522 62441799 + 2.5 NA intron (NM_001017415, intron 3 of 8) intron (NM_001017415, intron 3 of 8) 4611 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 338-14 chr2 20378267 20378457 + 2.5 NA Intergenic LTR16A|LTR|ERVL -26109 NM_001352925 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 521 chr1 189116039 189116337 + 2.5 NA Intergenic L1MB7|LINE|L1 1359822 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 309-8 chr11 124539860 124540096 + 2.5 NA Intergenic Intergenic 3676 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 529.5-13 chr18 5952977 5953215 + 2.5 NA Intergenic Intergenic -57142 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 401.5-23 chr5 13138705 13139038 + 2.5 NA Intergenic Intergenic -105985 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 342.5-18 chr2 109128120 109128345 + 2.5 NA promoter-TSS (NM_001099289) promoter-TSS (NM_001099289) -973 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 299-15 chr19 8958497 8958716 + 2.5 NA exon (NM_024690, exon 3 of 84) exon (NM_024690, exon 3 of 84) 22736 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 331-18 chr14 55382600 55382833 + 2.5 NA intron (NM_014924, intron 5 of 9) intron (NM_014924, intron 5 of 9) 29142 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 524-3 chr11 132307887 132308245 + 2.5 NA intron (NM_016522, intron 4 of 6) intron (NM_016522, intron 4 of 6) 23764 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 222.5-4 chr12 33000764 33000854 + 2.5 NA Intergenic L1M5|LINE|L1 -103963 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 481 chr1 95186342 95186586 + 2.5 NA intron (NR_125948, intron 3 of 4) intron (NR_125948, intron 3 of 4) 47518 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 392 chr1 63614787 63615068 + 2.5 NA intron (NM_001172819, intron 1 of 10) MIRb|SINE|MIR -8289 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 319-7 chr13 60682312 60682612 + 2.5 NA intron (NR_047003, intron 1 of 4) intron (NR_047003, intron 1 of 4) 9507 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 640-2 chr18 57175052 57175346 + 2.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -4005 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 401.5-21 chr3 101560503 101560736 + 2.5 NA Intergenic L1MB4|LINE|L1 -1249 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 556-5 chr14 47266548 47266892 + 2.5 NA intron (NM_001113498, intron 2 of 16) L2a|LINE|L2 76526 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 365.5-7 chr17 77165009 77165237 + 2.5 NA intron (NM_001143999, intron 3 of 16) intron (NM_001143999, intron 3 of 16) -20090 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 557-22 chr8 110837505 110837907 + 2.5 NA Intergenic L1MB1|LINE|L1 189727 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 343.5-26 chr3 174235950 174236136 + 2.5 NA intron (NM_001365928, intron 4 of 6) L2a|LINE|L2 -315247 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 264-3 chr12 59189164 59189334 + 2.5 NA Intergenic Intergenic -268711 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 304-34 chr7 29418032 29418166 + 2.5 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -61613 NM_001293077 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 262.5-7 chr16 10970025 10970212 + 2.5 NA intron (NM_015226, intron 4 of 22) MLT1L|LTR|ERVL-MaLR 25554 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 755-3 chr18 21551992 21552407 + 2.5 NA intron (NM_052911, intron 8 of 11) L1MC1|LINE|L1 48505 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 382-9 chr13 96296861 96297013 + 2.5 NA intron (NM_153456, intron 1 of 1) L2b|LINE|L2 -130292 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 567-16 chr5 85882430 85882863 + 2.5 NA Intergenic Intergenic -399798 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 508-2 chr11 126099539 126099867 + 2.5 NA Intergenic L1ME3G|LINE|L1 -36411 NM_001243597 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 415.5-14 chr5 90621089 90621412 + 2.5 NA intron (NR_003149, intron 4 of 89) intron (NR_003149, intron 4 of 89) 62453 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 400.5-8 chr15 62498284 62498619 + 2.5 NA Intergenic Intergenic 146730 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 273.5-28 chr7 51025286 51025481 + 2.5 NA intron (NM_015198, intron 11 of 12) intron (NM_015198, intron 11 of 12) -231930 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 461-32 chr9 38741368 38741585 + 2.5 NA Intergenic Intergenic 120388 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 452.5-3 chr12 11450868 11451158 + 2.5 NA intron (NR_148969, intron 2 of 4) intron (NR_148969, intron 2 of 4) 35665 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 359-37 chr7 83647204 83647408 + 2.5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 1833 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 854-6 chr2 62949312 62949711 + 2.5 NA intron (NM_001142615, intron 13 of 22) intron (NM_001142615, intron 13 of 22) 98200 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 430-5 chr1 235739995 235740220 + 2.5 NA intron (NM_000081, intron 31 of 52) intron (NM_000081, intron 31 of 52) -89353 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 795.5 chr1 241076698 241077059 + 2.5 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -55394 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 637.5-6 chr3 195096041 195096380 + 2.5 NA TTS (NR_104188) TTS (NR_104188) 1622 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 687.5-8 chr8 20194264 20194640 + 2.5 NA Intergenic Intergenic -2929 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 211.5-22 chr21 14185097 14185193 + 2.5 NA intron (NM_198996, intron 3 of 9) intron (NM_198996, intron 3 of 9) 21804 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 627.5-9 chr6 124519445 124519917 + 2.5 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 236676 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 453-24 chr4 35213648 35213906 + 2.5 NA Intergenic Intergenic -944030 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 727-6 chr20 1066336 1066809 + 2.5 NA Intergenic L1MEg|LINE|L1 -46657 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 495-14 chr4 57414581 57414809 + 2.5 NA Intergenic Intergenic -11177 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 388-12 chr13 58247279 58247529 + 2.5 NA Intergenic L1MC5a|LINE|L1 -14287 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 584.5-2 chr14 51323650 51324019 + 2.5 NA intron (NR_145423, intron 1 of 1) MER21C|LTR|ERVL 4551 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 421-22 chr22 27377174 27377420 + 2.5 NA Intergenic AluJo|SINE|Alu 66646 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 262.5-26 chr8 88815054 88815188 + 2.5 NA Intergenic L1PA17|LINE|L1 -487638 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 251.5-21 chr4 41331016 41331163 + 2.5 NA Intergenic Intergenic -28518 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 565.5-14 chr4 183563599 183564165 + 2.5 NA Intergenic Intergenic 57800 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 733.5 chr10 32049691 32050140 + 2.5 NA intron (NM_004521, intron 1 of 25) intron (NM_004521, intron 1 of 25) 6510 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 359.5-9 chr13 37226437 37226663 + 2.5 NA Intergenic Intergenic -120886 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 479.5-15 chr7 19939052 19939333 + 2.5 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -165575 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 301-23 chr2 49166268 49166474 + 2.5 NA Intergenic Intergenic -11844 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 462 chr1 38494900 38495193 + 2.5 NA Intergenic L2|LINE|L2 19850 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 226.5-12 chr18 71803525 71803647 + 2.5 NA Intergenic L1MA7|LINE|L1 -21360 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 557-9 chr15 63145517 63145854 + 2.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 11792 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 504-7 chr10 114913601 114914017 + 2.5 NA Intergenic Intergenic -24386 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 291-10 chr17 47224855 47225030 + 2.5 NA Intergenic Intergenic 15594 NM_002476 4635 Hs.463300 NM_002476 ENSG00000198336 MYL4 ALC1|AMLC|GT1|PRO1957 myosin light chain 4 protein-coding 471-5 chr10 21292453 21292865 + 2.5 NA Intergenic Intergenic 80291 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 308-11 chr14 86057501 86057654 + 2.5 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 122899 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 445-24 chr6 109581985 109582330 + 2.5 NA intron (NM_001145128, intron 19 of 40) Tigger1|DNA|TcMar-Tigger -98920 NM_001164313 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 437-12 chr12 20232624 20232837 + 2.5 NA Intergenic Tigger4|DNA|TcMar-Tigger -104829 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 416.5-5 chr10 98842641 98843030 + 2.5 NA intron (NM_021828, intron 3 of 11) L1MC1|LINE|L1 81733 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 252-2 chr1 108810599 108810705 + 2.5 NA Intergenic L1M5|LINE|L1 46442 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 562.5-10 chr14 39959416 39959763 + 2.5 NA Intergenic L1PB1|LINE|L1 -527089 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 456.5-19 chr5 153256790 153257109 + 2.5 NA Intergenic Intergenic -233575 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 517.5-14 chr6 42819724 42820094 + 2.5 NA intron (NM_001318819, intron 3 of 13) intron (NM_001318819, intron 3 of 13) -1147 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 416-17 chr20 52911571 52911797 + 2.5 NA Intergenic Intergenic -60674 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 291.5-19 chr6 114373118 114373345 + 2.5 NA Intergenic L2|LINE|L2 -310354 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 382-5 chr11 83546226 83546629 + 2.5 NA intron (NM_001142699, intron 19 of 27) MIR|SINE|MIR 135998 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 476.5-13 chr4 65881817 65882088 + 2.5 NA Intergenic Intergenic -211457 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 537.5-9 chr18 3877861 3878436 + 2.5 NA promoter-TSS (NR_038895) promoter-TSS (NR_038895) -32 NR_038895 201477 Hs.627208 NR_038895 ENSG00000263724 DLGAP1-AS3 - DLGAP1 antisense RNA 3 ncRNA 489-25 chr5 55499181 55499444 + 2.5 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) 9614 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 197-10 chr11 75039258 75039407 + 2.5 NA Intergenic L1MB4|LINE|L1 50399 NM_001367864 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 351.5-13 chr2 232266145 232266343 + 2.5 NA intron (NR_046477, intron 12 of 18) intron (NR_046477, intron 12 of 18) 93591 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 206.5-42 chr9 136114257 136114369 + 2.5 NA TTS (NM_152833) TTS (NM_152833) 4118 NM_001256526 90120 Hs.287411 NM_152833 ENSG00000238227 TMEM250 C9orf69 transmembrane protein 250 protein-coding 527 chr1 28137510 28137846 + 2.5 NA Intergenic L1MB3|LINE|L1 39012 NM_000952 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 215.5-39 chr6 136549265 136549363 + 2.5 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 1505 NM_001198617 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 327.5-9 chr17 68878783 68878975 + 2.5 NA intron (NM_001288985, intron 32 of 39) intron (NM_001288985, intron 32 of 39) 76513 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 364.5-24 chr6 113919469 113919705 + 2.5 NA intron (NR_027060, intron 3 of 3) intron (NR_027060, intron 3 of 3) 15200 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 425-31 chr3 177213445 177213638 + 2.5 NA Intergenic Intergenic -16059 NM_024665 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 683.5-7 chr5 26616462 26616826 + 2.5 NA Intergenic Intergenic 421942 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 406.5-19 chr3 106467695 106468023 + 2.5 NA Intergenic L1MA2|LINE|L1 -598458 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 491-6 chr11 39559318 39559630 + 2.5 NA Intergenic Intergenic 733656 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 478.5-19 chr5 105124306 105124578 + 2.5 NA Intergenic L1MB1|LINE|L1 24968 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 311-9 chr11 112806013 112806229 + 2.5 NA Intergenic Intergenic -155299 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 607-7 chr10 53737720 53737982 + 2.5 NA Intergenic Intergenic -748379 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 381.5-2 chr10 111250789 111251084 + 2.5 NA Intergenic L1MA4|LINE|L1 136645 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 528.5-9 chr2 127861059 127861328 + 2.5 NA TTS (NM_031445) TTS (NM_031445) -3038 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 659-14 chr8 88387016 88387345 + 2.5 NA Intergenic AluSz|SINE|Alu -59697 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 402.5-8 chr15 38102977 38103262 + 2.5 NA Intergenic Intergenic -30129 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 437-18 chr16 72434418 72434732 + 2.5 NA intron (NR_159371, intron 3 of 5) L1MEg|LINE|L1 230395 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 538-5 chr15 27204181 27204584 + 2.5 NA intron (NM_001270873, intron 3 of 5) L1PA15|LINE|L1 -43063 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 385.5-16 chr15 71463167 71463486 + 2.5 NA intron (NM_024817, intron 6 of 16) Plat_L3|LINE|CR1 -83910 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 351-26 chr21 15896227 15896409 + 2.5 NA Intergenic L1MA2|LINE|L1 166336 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 571.5-4 chr2 45952812 45953225 + 2.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 301343 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 492.5-8 chr16 60656410 60656890 + 2.5 NA Intergenic Intergenic -296857 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 268.5-33 chr7 39335533 39335664 + 2.5 NA intron (NM_001370959, intron 4 of 9) MIRc|SINE|MIR -6464 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 438-31 chr8 123244133 123244393 + 2.5 NA intron (NM_001204180, intron 2 of 5) intron (NM_001204180, intron 2 of 5) -2886 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 284.5-12 chr12 100155317 100155553 + 2.5 NA TTS (NR_036632) TTS (NR_036632) -12561 NM_015054 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 434.5-14 chr5 151236199 151236403 + 2.5 NA Intergenic L1MA10|LINE|L1 -12209 NM_015621 26112 Hs.655336 NM_015621 ENSG00000198624 CCDC69 - coiled-coil domain containing 69 protein-coding 385-5 chr11 101687531 101687694 + 2.5 NA Intergenic L2a|LINE|L2 -103605 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 652-13 chr5 113381009 113381311 + 2.5 NA intron (NM_001085377, intron 2 of 18) L2a|LINE|L2 53829 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 389-41 chr9 27150513 27150688 + 2.5 NA intron (NM_001290078, intron 1 of 20) AluJb|SINE|Alu 41459 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 449-33 chr8 141567533 141567952 + 2.5 NA Intergenic Intergenic -60512 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 478.5-6 chr16 6555039 6555273 + 2.5 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -218653 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 401-9 chr11 15512006 15512197 + 2.5 NA Intergenic L1ME2|LINE|L1 -131784 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 366.5-35 chr9 31541812 31541961 + 2.5 NA Intergenic Intergenic -160396 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 417.5-28 chr9 70843727 70843944 + 2.5 NA intron (NM_001366143, intron 4 of 25) intron (NM_001366143, intron 4 of 25) 25217 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 404.5-11 chr2 16467408 16467702 + 2.5 NA Intergenic Intergenic 198279 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 399.5-15 chr3 19792251 19792425 + 2.5 NA Intergenic L1MA4|LINE|L1 141879 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 223-2 chr1 174011269 174011404 + 2.5 NA Intergenic Intergenic -18264 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 300-20 chr5 27082162 27082354 + 2.5 NA Intergenic Intergenic -43672 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 254.5-18 chr16 80564527 80564660 + 2.5 NA Intergenic Intergenic -1458 NR_120307 102724084 Hs.147884 NR_120307 LOC102724084 - uncharacterized LOC102724084 ncRNA 224-14 chr2 29735970 29736089 + 2.5 NA intron (NM_004304, intron 1 of 28) MIR|SINE|MIR 185557 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 476-34 chrX 21786832 21787131 + 2.5 NA Intergenic Intergenic -28865 NR_045617 23676 Hs.86492 NM_014332 ENSG00000091482 SMPX DFN6|DFNX4 small muscle protein X-linked protein-coding 265-34 chr7 113464452 113464630 + 2.5 NA Intergenic L2b|LINE|L2 -345959 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 263 chr1 34918615 34918780 + 2.5 NA intron (NM_001080418, intron 1 of 11) intron (NM_001080418, intron 1 of 11) 10953 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 630-19 chr7 139598873 139599147 + 2.5 NA intron (NM_001113239, intron 11 of 14) intron (NM_001113239, intron 11 of 14) 75325 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 406.5-21 chr4 91084130 91084453 + 2.5 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 849260 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 410-10 chr16 51100706 51100898 + 2.5 NA intron (NR_039672, intron 2 of 6) L2c|LINE|L2 49795 NM_001127892 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 411.5-4 chr10 50504627 50504862 + 2.5 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 119212 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 386.5-10 chr16 23467797 23468020 + 2.5 NA intron (NM_015044, intron 16 of 16) intron (NM_015044, intron 16 of 16) -14719 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 332-42 chr8 61574853 61575023 + 2.5 NA intron (NM_004318, intron 16 of 24) intron (NM_004318, intron 16 of 24) 114873 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 506.5-2 chr10 72377887 72378223 + 2.5 NA intron (NM_001195519, intron 5 of 6) AluSx|SINE|Alu -23136 NM_017626 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 183.5-22 chr3 63792312 63792423 + 2.5 NA Intergenic Intergenic -26932 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 329-18 chr2 224734514 224734703 + 2.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -149211 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 373-12 chr12 82159235 82159428 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR 199056 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 288.5-40 chr7 52923723 52923939 + 2.5 NA Intergenic Intergenic -111802 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 303.5-26 chr8 26210440 26210603 + 2.5 NA Intergenic PABL_A|LTR|ERV1 -80987 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 354-2 chr1 34863341 34863545 + 2.5 NA Intergenic Intergenic -3694 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 615-16 chr8 83411480 83411861 + 2.5 NA Intergenic Intergenic 7912 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 236.5-37 chrX 94511405 94511522 + 2.5 NA Intergenic L1MC1|LINE|L1 551763 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 522-29 chr5 128560223 128560552 + 2.5 NA Intergenic Intergenic -22142 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 475.5-14 chr3 162898815 162899121 + 2.5 NA Intergenic L1M4|LINE|L1 404333 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 327-47 chr8 126456167 126456352 + 2.5 NA Intergenic Intergenic 102219 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 358-38 chr4 94263458 94263680 + 2.5 NA intron (NM_001254949, intron 1 of 15) intron (NM_001254949, intron 1 of 15) 10260 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 698.5-2 chr8 117277742 117278305 + 2.5 NA Intergenic Intergenic 143028 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 273.5-8 chr16 65518901 65519126 + 2.5 NA intron (NR_027755, intron 2 of 8) MLT1L|LTR|ERVL-MaLR 57287 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 791.5 chr14 74660075 74660695 + 2.5 NA TTS (NM_001039479) TTS (NM_001039479) -48148 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 316-10 chr14 63661052 63661283 + 2.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -19296 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 794-3 chr3 18760792 18761223 + 2.5 NA Intergenic L2a|LINE|L2 -315415 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 634.5-6 chr2 82246120 82246482 + 2.5 NA Intergenic Intergenic -610502 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 642.5-7 chr6 113349198 113349601 + 2.5 NA Intergenic Intergenic 84048 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 407-9 chr12 46909088 46909360 + 2.5 NA Intergenic L1MA3|LINE|L1 -83227 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 450.5-17 chr7 17996947 17997281 + 2.5 NA Intergenic Intergenic 30732 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 908.5-5 chr4 66325612 66326013 + 2.5 NA Intergenic Intergenic 48988 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 994 chr7 7936655 7937240 + 2.5 NA Intergenic L1ME3E|LINE|L1 31805 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 314-42 chr9 35573980 35574200 + 2.5 NA Intergenic Intergenic -10212 NM_001287238 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 636-10 chr16 13574952 13575510 + 2.5 NA Intergenic L1MEc|LINE|L1 -344926 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 375-22 chr3 152121664 152121860 + 2.5 NA Intergenic Intergenic 83667 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 315.5-37 chr8 84905286 84905448 + 2.5 NA intron (NM_001287244, intron 7 of 7) L1MB1|LINE|L1 199440 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 535-15 chr3 197603329 197603800 + 2.5 NA Intergenic LTR88a|LTR|Gypsy? 24317 NR_003266 220729 Hs.478854 NR_003266 ENSG00000214135 LOC220729 - succinate dehydrogenase complex flavoprotein subunit A pseudogene pseudo 459-24 chr5 30639866 30640079 + 2.5 NA Intergenic Intergenic -553714 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 643.5-11 chr3 70409035 70409496 + 2.5 NA Intergenic Intergenic -96627 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 443.5-15 chr7 125366638 125366948 + 2.5 NA intron (NR_110188, intron 8 of 8) L1PA15|LINE|L1 -102502 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 367-9 chr11 94486364 94486533 + 2.5 NA intron (NM_001330347, intron 3 of 19) L2a|LINE|L2 7396 NM_005590 4361 Hs.192649 NM_005590 ENSG00000020922 MRE11 ATLD|HNGS1|MRE11A|MRE11B MRE11 homolog, double strand break repair nuclease protein-coding 331-16 chr12 110969775 110970008 + 2.5 NA Intergenic AluJr|SINE|Alu -12073 NR_135002 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 339.5-21 chr4 83551351 83551573 + 2.5 NA intron (NM_001256421, intron 3 of 12) L1ME3Cz|LINE|L1 15354 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 432.5-3 chr11 80873432 80873887 + 2.5 NA Intergenic Intergenic -110856 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 447.5-22 chr7 44097592 44097955 + 2.5 NA Intergenic Intergenic -6572 NM_001129 165 Hs.439463 NM_001129 ENSG00000106624 AEBP1 ACLP AE binding protein 1 protein-coding 237-24 chr6 135755200 135755294 + 2.5 NA Intergenic Intergenic -96454 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 341.5-7 chr11 96089760 96089914 + 2.5 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -165630 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 516-25 chr4 89030844 89031194 + 2.5 NA intron (NM_014883, intron 1 of 23) intron (NM_014883, intron 1 of 23) 26166 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 493.5-10 chr2 136284594 136285012 + 2.5 NA Intergenic Charlie4z|DNA|hAT-Charlie -166648 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 365.5-11 chr2 175529567 175529825 + 2.5 NA Intergenic Intergenic -347986 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 310.5-33 chr4 48353978 48354189 + 2.5 NA intron (NM_020846, intron 1 of 7) intron (NM_020846, intron 1 of 7) 12554 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 526.5-8 chr14 73030701 73031023 + 2.5 NA Intergenic Intergenic -3756 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 624-14 chr8 11335362 11335707 + 2.5 NA Intergenic L1M4c|LINE|L1 -4103 NR_001578 157739 Hs.583896 NR_001578 ENSG00000154316 TDH SDR14E1P L-threonine dehydrogenase (pseudogene) pseudo 463.5-17 chr5 35485217 35485451 + 2.5 NA Intergenic Intergenic -132529 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 514.5-19 chr5 155141147 155141393 + 2.5 NA Intergenic L1M6|LINE|L1 127515 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 379-17 chr16 66109897 66110137 + 2.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -256674 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 854-4 chr19 15261606 15262137 + 2.5 NA intron (NM_001330384, intron 7 of 11) intron (NM_001330384, intron 7 of 11) 18580 NM_014299 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 368.5-23 chr5 11444753 11444914 + 2.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 144084 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 341.5-18 chr2 170071678 170071830 + 2.5 NA intron (NM_172070, intron 35 of 38) intron (NM_172070, intron 35 of 38) -106393 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 452.5-11 chr22 27643532 27643795 + 2.5 NA Intergenic MIR|SINE|MIR 158093 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 607-3 chr1 110527028 110527415 + 2.5 NA Intergenic Intergenic -8046 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 377.5-2 chr13 61635361 61635601 + 2.5 NA Intergenic Intergenic -207535 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 209.5-15 chr15 84599271 84599395 + 2.5 NA Intergenic Intergenic -1676 NM_181877 54993 Hs.594023 NM_017894 ENSG00000176371 ZSCAN2 ZFP29|ZNF854 zinc finger and SCAN domain containing 2 protein-coding 303-21 chr3 120765832 120766072 + 2.5 NA intron (NM_005513, intron 2 of 4) intron (NM_005513, intron 2 of 4) 23208 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 535.5-6 chr17 50732720 50732961 + 2.5 NA intron (NM_006107, intron 1 of 10) AluJb|SINE|Alu 13237 NM_001330330 51747 Hs.130293 NM_006107 ENSG00000108848 LUC7L3 CRA|CREAP-1|CROP|LUC7A|OA48-18|hLuc7A LUC7 like 3 pre-mRNA splicing factor protein-coding 495.5-14 chr4 138263515 138263877 + 2.5 NA Intergenic Intergenic -21347 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 484-24 chr2 219109836 219110126 + 2.5 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) -49060 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 421.5-7 chr12 19896006 19896306 + 2.5 NA Intergenic Intergenic -118529 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 431.5-15 chr4 65950838 65951167 + 2.5 NA Intergenic Intergenic -280507 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 415.5-21 chr9 37757731 37758043 + 2.5 NA intron (NR_104612, intron 1 of 8) MIRb|SINE|MIR 4082 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 696.5-2 chr10 33718786 33719212 + 2.5 NA Intergenic L3|LINE|CR1 53681 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 398-38 chr9 89592457 89592753 + 2.5 NA Intergenic Intergenic -12407 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 584.5-7 chr3 76946076 76946478 + 2.5 NA Intergenic L1MEc|LINE|L1 -93822 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 318-44 chr8 113785266 113785498 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -348443 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 544.5-14 chr8 98729431 98729721 + 2.5 NA intron (NM_006281, intron 4 of 10) intron (NM_006281, intron 4 of 10) 96095 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 490-3 chr11 36136327 36136600 + 2.5 NA intron (NM_001304263, intron 3 of 4) MSTA|LTR|ERVL-MaLR -58562 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 230-11 chr15 37895541 37895679 + 2.5 NA Intergenic Intergenic -38997 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 370.5-2 chr1 44982463 44982654 + 2.5 NA intron (NM_001166588, intron 1 of 9) AluSq2|SINE|Alu 4037 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 650.5-4 chr12 43513989 43514321 + 2.5 NA intron (NM_025003, intron 3 of 38) FLAM_C|SINE|Alu 38048 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 216.5-5 chr1 215262838 215262932 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 180148 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 275.5-32 chr7 43539778 43539941 + 2.5 NA intron (NM_001287059, intron 22 of 27) intron (NM_001287059, intron 22 of 27) -17317 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 342-27 chr4 74503933 74504317 + 2.5 NA Intergenic L2a|LINE|L2 58989 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 481-10 chr2 45733067 45733434 + 2.5 NA intron (NM_005400, intron 1 of 14) L2c|LINE|L2 81575 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 435.5-2 chr11 121240333 121240542 + 2.5 NA Intergenic LTR14B|LTR|ERVK -52334 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 441.5-9 chr14 86826465 86826685 + 2.5 NA Intergenic L2b|LINE|L2 -79203 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 388-11 chr13 57558030 57558354 + 2.5 NA Intergenic Intergenic -73552 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 382-19 chr18 6627055 6627213 + 2.5 NA Intergenic Intergenic -102582 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 353-7 chr11 82550473 82550726 + 2.5 NA Intergenic MIR|SINE|MIR -146686 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 638-9 chr21 34043496 34043928 + 2.5 NA Intergenic L1MB7|LINE|L1 -29866 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 268.5-11 chr16 59757862 59758080 + 2.5 NA Intergenic Intergenic -2780 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 526-22 chrX 15883833 15884077 + 2.5 NA Intergenic LTR29|LTR|ERV1 -29142 NM_001369008 8905 Hs.121592 NM_003916 ENSG00000182287 AP1S2 DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B adaptor related protein complex 1 subunit sigma 2 protein-coding 285 chr1 35380202 35380342 + 2.5 NA intron (NM_005095, intron 7 of 29) intron (NM_005095, intron 7 of 29) -14195 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 457.5-15 chr2 147651233 147651767 + 2.5 NA Intergenic Intergenic -193017 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 305-24 chr2 198915727 198915935 + 2.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -540734 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 446-29 chr5 113865777 113866117 + 2.5 NA Intergenic Intergenic 352253 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 456-31 chr7 89870531 89871070 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -248600 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 246.5-41 chr8 136605604 136605768 + 2.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 74888 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 537-4 chr11 98874255 98874580 + 2.5 NA Intergenic L1ME2|LINE|L1 -146532 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 454-7 chr14 69721079 69721513 + 2.5 NA Intergenic LTR84b|LTR|ERVL -45846 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 720.5-5 chr18 55390468 55390863 + 2.5 NA intron (NM_001348217, intron 5 of 18) intron (NM_001348217, intron 5 of 18) 11023 NM_001330605 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 612.5-3 chr16 62158920 62159264 + 2.5 NA Intergenic Intergenic -122654 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 249-8 chr11 83280845 83281031 + 2.5 NA intron (NM_001286116, intron 1 of 8) intron (NM_001286116, intron 1 of 8) 5469 NM_021825 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 571.5-14 chrX 68803697 68803960 + 2.5 NA Intergenic L2b|LINE|L2 -25169 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 444.5-13 chr4 59841450 59841744 + 2.5 NA Intergenic Intergenic 828024 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 374-7 chr11 92324644 92324811 + 2.5 NA intron (NM_001367949, intron 1 of 27) Tigger1|DNA|TcMar-Tigger -27369 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 360.5-26 chr8 125772774 125773218 + 2.5 NA Intergenic MIR|SINE|MIR 178201 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 169-10 chr20 12711664 12711748 + 2.5 NA Intergenic L1MC2|LINE|L1 225257 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 293-28 chr7 12530957 12531122 + 2.5 NA non-coding (NR_136261, exon 4 of 6) non-coding (NR_136261, exon 4 of 6) 26642 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 610-16 chr8 77113921 77114280 + 2.5 NA Intergenic Intergenic -113056 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 269-11 chr12 11869808 11869954 + 2.5 NA exon (NM_001987, exon 5 of 8) exon (NM_001987, exon 5 of 8) -179980 NM_001370268 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 347.5-7 chr13 59243706 59243870 + 2.5 NA Intergenic Intergenic -768930 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 260.5-21 chr2 54661192 54661308 + 2.5 NA 3' UTR (NM_178313, exon 31 of 31) 3' UTR (NM_178313, exon 31 of 31) -63762 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 547.5-16 chr8 94374180 94374634 + 2.5 NA intron (NM_012415, intron 14 of 14) L1MEj|LINE|L1 62537 NM_001205263 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 380-24 chr7 104948058 104948316 + 2.5 NA Intergenic Intergenic -21542 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 509-23 chr8 136199122 136199445 + 2.5 NA Intergenic Intergenic -331515 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 349.5-12 chr14 88298192 88298331 + 2.5 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 25008 NM_138317 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 312-14 chr2 172287074 172287269 + 2.5 NA Intergenic Intergenic -140165 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 379-40 chr7 125228274 125228573 + 2.5 NA intron (NR_110188, intron 3 of 8) L1MA9|LINE|L1 35868 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 411-27 chr3 172597501 172597763 + 2.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger -2025 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 502-7 chr2 34185779 34186119 + 2.5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 118723 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 1260 chr10 99211980 99212692 + 2.5 NA intron (NM_021828, intron 2 of 11) L1MA8|LINE|L1 23539 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 343.5-27 chr4 77110844 77111083 + 2.5 NA Intergenic LTR33|LTR|ERVL -34974 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 589.5-3 chr16 62674039 62674310 + 2.5 NA Intergenic L1MA6|LINE|L1 -637736 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 740-6 chr5 16059402 16059879 + 2.5 NA Intergenic L2c|LINE|L2 120151 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 614 chr1 62697613 62698158 + 2.5 NA Intergenic Intergenic -9499 NM_001272002 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 407-12 chr12 125625737 125626008 + 2.5 NA intron (NM_001286219, intron 1 of 4) L1ME1|LINE|L1 3420 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 962.5 chr2 159163054 159163626 + 2.5 NA exon (NM_033394, exon 8 of 27) exon (NM_033394, exon 8 of 27) -23495 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 599.5-2 chr11 37934568 37934952 + 2.5 NA Intergenic Intergenic -3841 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 736.5 chr1 211843881 211844352 + 2.5 NA intron (NR_135820, intron 3 of 5) intron (NR_135820, intron 3 of 5) 13155 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 381-16 chr4 52841523 52841819 + 2.5 NA Intergenic Intergenic -20646 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 491.5-14 chr4 38873970 38874248 + 2.5 NA intron (NM_001330764, intron 2 of 13) MIRb|SINE|MIR 6077 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 255.5-20 chr4 123200210 123200342 + 2.5 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -196519 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 449-28 chr6 72194407 72194665 + 2.5 NA intron (NM_014989, intron 6 of 33) L2a|LINE|L2 -18357 NM_001350446 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 435.5 chr10 54784998 54785248 + 2.5 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 16108 NM_001354430 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 471-20 chr2 41272497 41272739 + 2.5 NA Intergenic L1PA4|LINE|L1 -604937 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 414-18 chr2 70493550 70493941 + 2.5 NA intron (NM_003236, intron 2 of 5) intron (NM_003236, intron 2 of 5) -12105 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 565.5-10 chr3 21966012 21966370 + 2.5 NA intron (NR_046876, intron 2 of 3) intron (NR_046876, intron 2 of 3) 9052 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 311.5-41 chr8 17967131 17967346 + 2.5 NA intron (NM_001352648, intron 23 of 39) intron (NM_001352648, intron 23 of 39) 44250 NM_001352655 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 489-33 chr8 108563530 108563791 + 2.5 NA Intergenic L1MDa|LINE|L1 120036 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 487.5-11 chr15 67156947 67157282 + 2.5 NA intron (NM_001145103, intron 1 of 8) intron (NM_001145103, intron 1 of 8) -9041 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 318-20 chr2 79190930 79191124 + 2.5 NA Intergenic Intergenic -31274 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 276.5-32 chr5 36444621 36444731 + 2.5 NA Intergenic LTR16C|LTR|ERVL -142774 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 324.5-25 chr20 46635424 46635562 + 2.5 NA intron (NM_001193340, intron 2 of 12) L2a|LINE|L2 15966 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 404-10 chr10 122246314 122246533 + 2.5 NA intron (NM_206862, intron 19 of 22) intron (NM_206862, intron 19 of 22) -24873 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 463.5-7 chr18 3216772 3217068 + 2.5 NA intron (NM_019856, intron 1 of 36) MLT1B|LTR|ERVL-MaLR 3048 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 736 chr1 220717402 220717942 + 2.5 NA Intergenic PABL_A-int|LTR|ERV1 27309 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 474-21 chr4 55398632 55398993 + 2.5 NA intron (NM_018475, intron 1 of 5) intron (NM_018475, intron 1 of 5) 2855 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 687.5-3 chr17 33206936 33207388 + 2.5 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 85826 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 494-11 chr2 201632053 201632316 + 2.5 NA exon (NM_152388, exon 6 of 12) exon (NM_152388, exon 6 of 12) 10486 NM_152388 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 350.5-13 chr6 46765643 46765793 + 2.5 NA Intergenic Intergenic 18801 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 789.5-7 chr5 2078814 2079296 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR 191724 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 421.5-20 chr5 21226005 21226198 + 2.5 NA Intergenic L1PA7|LINE|L1 -233379 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 518.5-10 chr18 78731846 78732118 + 2.5 NA Intergenic Intergenic -248293 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 519-3 chr10 64540517 64540797 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -284871 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 489-17 chr16 79804034 79804370 + 2.5 NA Intergenic Intergenic 8953 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 422-6 chr11 81770770 81771178 + 2.5 NA Intergenic MER2|DNA|TcMar-Tigger 119862 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 468-22 chr3 13194671 13194947 + 2.5 NA Intergenic L1MD2|LINE|L1 -121380 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 877.5-4 chr3 107365603 107366001 + 2.5 NA Intergenic Intergenic -11637 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 425-24 chr18 36922185 36922504 + 2.5 NA intron (NR_134585, intron 1 of 3) intron (NR_134585, intron 1 of 3) 1470 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 442.5-12 chr2 24774293 24774731 + 2.5 NA Intergenic AluJr|SINE|Alu -18603 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 241.5-40 chr9 31279828 31279992 + 2.5 NA Intergenic L1MB4|LINE|L1 101580 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 365.5-14 chr4 131213018 131213264 + 2.5 NA Intergenic LTR80A|LTR|ERVL -551697 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 352-22 chr20 23057856 23058119 + 2.5 NA Intergenic Intergenic -8323 NM_000361 7056 Hs.2030 NM_000361 ENSG00000178726 THBD AHUS6|BDCA3|CD141|THPH12|THRM|TM thrombomodulin protein-coding 355-22 chr2 226749173 226749412 + 2.5 NA intron (NM_005544, intron 1 of 1) intron (NM_005544, intron 1 of 1) 49498 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 497-10 chr22 19390812 19391074 + 2.5 NA intron (NM_003325, intron 9 of 24) L1ME2|LINE|L1 40790 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 299.5-32 chr8 54850348 54850589 + 2.5 NA Intergenic Intergenic 234372 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 312.5-30 chr7 9177587 9177744 + 2.5 NA Intergenic Intergenic -456605 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 619.5-11 chr6 140146927 140147190 + 2.5 NA Intergenic L1M5|LINE|L1 -58194 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 478.5-7 chr17 53898550 53898744 + 2.5 NA Intergenic MIR|SINE|MIR 75720 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 806 chr10 111427307 111427702 + 2.5 NA Intergenic L1ME4a|LINE|L1 313213 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 415.5-15 chr5 131656683 131656994 + 2.5 NA intron (NM_133372, intron 15 of 17) Tigger2|DNA|TcMar-Tigger -21609 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 360-22 chr2 60934357 60934673 + 2.5 NA Intergenic L1MA8|LINE|L1 52941 NM_002908 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 242.5-9 chr18 29958209 29958336 + 2.5 NA Intergenic Intergenic -340638 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 386-5 chr10 68225886 68226154 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 6093 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 722.5-3 chr11 34065976 34066599 + 2.5 NA intron (NM_005898, intron 2 of 18) AluJb|SINE|Alu 14556 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 423.5-27 chr7 41803469 41803765 + 2.5 NA Intergenic L1M5|LINE|L1 -100527 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 340-41 chr9 28204306 28204599 + 2.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 514853 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 462-26 chr3 120368180 120368449 + 2.5 NA Intergenic Intergenic -18960 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 297-21 chr3 24820275 24820472 + 2.5 NA Intergenic L1ME3B|LINE|L1 -8950 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 549-9 chr20 31405614 31406094 + 2.5 NA intron (NM_001171832, intron 1 of 1) intron (NM_001171832, intron 1 of 1) 361 NM_001011878 245934 Hs.272294 NM_001011878 ENSG00000204548 DEFB121 DEFB21|ESC42RELC defensin beta 121 protein-coding 451.5-5 chr10 56314602 56314940 + 2.5 NA Intergenic MIR|SINE|MIR 46488 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 447.5-21 chr5 125250499 125250848 + 2.5 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 213842 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 557.5-13 chr6 28362905 28363339 + 2.5 NA intron (NM_024493, intron 3 of 5) AluJo|SINE|Alu -6851 NM_001135215 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 305.5-8 chr15 42122677 42122955 + 2.5 NA Intergenic LTR16B1|LTR|ERVL -28254 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 329-25 chr4 54543352 54543599 + 2.5 NA Intergenic MIRb|SINE|MIR 63656 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 305-13 chr12 63810168 63810341 + 2.5 NA TTS (NM_001278237) TTS (NM_001278237) 11902 NR_126167 104169670 Hs.735874 NR_126167 ENSG00000255850 RXYLT1-AS1 TMEM5-AS1 RXYLT1 antisense RNA 1 ncRNA 522.5-18 chrX 78251814 78252058 + 2.5 NA Intergenic L1PB4|LINE|L1 75675 NM_006639 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 396-8 chr13 111156147 111156386 + 2.5 NA intron (NM_001354047, intron 2 of 16) L2a|LINE|L2 2600 NM_001320851 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 264.5-31 chr6 79292004 79292132 + 2.5 NA Intergenic LTR48B|LTR|ERV1 21316 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 679-18 chr9 119566797 119567142 + 2.5 NA Intergenic L3|LINE|CR1 -197534 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 426-25 chr22 27169299 27169583 + 2.5 NA Intergenic Intergenic -18075 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 342-28 chr5 43552233 43552455 + 2.5 NA intron (NM_006451, intron 2 of 10) intron (NM_006451, intron 2 of 10) 4733 NM_006451 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 674-10 chr9 2000851 2001203 + 2.5 NA Intergenic AluYa5|SINE|Alu -14320 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 499-26 chr8 136591389 136591690 + 2.5 NA intron (NR_147196, intron 2 of 5) MER5A|DNA|hAT-Charlie 60741 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 421-2 chr1 106426989 106427174 + 2.5 NA Intergenic (TATATATACG)n|Simple_repeat|Simple_repeat -391158 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 346-2 chr1 77204943 77205132 + 2.5 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 14393 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 413-28 chr3 13522280 13522582 + 2.5 NA Intergenic MIR|SINE|MIR -26694 NM_001998 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 623-4 chr17 61208491 61208795 + 2.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 159061 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 183-22 chr8 15727022 15727146 + 2.5 NA intron (NM_001356429, intron 6 of 10) intron (NM_001356429, intron 6 of 10) 186821 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 387-17 chr2 63642966 63643154 + 2.5 NA Intergenic L1MA2|LINE|L1 53909 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 261-30 chr8 129482529 129482712 + 2.5 NA intron (NR_130917, intron 1 of 3) L1PA16|LINE|L1 1522 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 345-19 chr2 3877288 3877488 + 2.5 NA Intergenic Intergenic 96644 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 252-31 chr8 126826181 126826296 + 2.5 NA Intergenic Intergenic -186916 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 293.5-25 chr5 30449932 30450198 + 2.5 NA Intergenic Intergenic 569505 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 250-15 chr16 54594078 54594203 + 2.5 NA Intergenic Intergenic -223441 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 424-20 chr5 110027030 110027327 + 2.5 NA Intergenic L1ME3F|LINE|L1 143996 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 429-17 chr2 28751041 28751297 + 2.5 NA promoter-TSS (NM_002709) promoter-TSS (NM_002709) -579 NM_206876 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|NSLH2|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 701-8 chr5 81634583 81635046 + 2.5 NA intron (NM_012446, intron 3 of 16) L2b|LINE|L2 116439 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 400.5-13 chr20 42063313 42063573 + 2.5 NA Intergenic L4_A_Mam|LINE|RTE-X -445066 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 318-43 chr8 77079476 77079615 + 2.5 NA Intergenic Intergenic -78501 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 364.5-8 chr15 59213796 59214020 + 2.5 NA intron (NM_004998, intron 12 of 27) intron (NM_004998, intron 12 of 27) 7065 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 338.5-31 chr6 164994936 164995097 + 2.5 NA Intergenic L1MA4A|LINE|L1 -172953 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 375-17 chr2 167985969 167986225 + 2.5 NA intron (NM_013233, intron 16 of 17) intron (NM_013233, intron 16 of 17) -44953 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 597-13 chr2 12730428 12730866 + 2.5 NA intron (NM_021643, intron 2 of 2) intron (NM_021643, intron 2 of 2) -6720 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 231-20 chr4 32879928 32880110 + 2.5 NA Intergenic Intergenic 528981 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 620 chr1 62982953 62983385 + 2.5 NA Intergenic Intergenic 27756 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 407-13 chr13 80070426 80070693 + 2.5 NA Intergenic Intergenic 59482 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 418-10 chr14 69324458 69324812 + 2.5 NA intron (NM_020692, intron 2 of 15) intron (NM_020692, intron 2 of 15) 64477 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 198.5-21 chr5 22854381 22854523 + 2.5 NA Intergenic Intergenic -1108 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 358-35 chr3 187996248 187996437 + 2.5 NA Intergenic Intergenic -19935 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 357-33 chr4 112555657 112555916 + 2.5 NA intron (NM_018392, intron 20 of 27) intron (NM_018392, intron 20 of 27) -39606 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 404.5-16 chr20 24281639 24281892 + 2.5 NA Intergenic MER66-int|LTR|ERV1 81998 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 330-11 chr10 74591043 74591278 + 2.5 NA intron (NM_001369123, intron 8 of 9) intron (NM_001369123, intron 8 of 9) -61836 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 366-15 chr3 119336437 119336652 + 2.5 NA intron (NM_020754, intron 1 of 11) Zaphod3|DNA|hAT-Tip100 -13784 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 277-5 chr10 72752915 72753109 + 2.5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 31983 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 603.5-6 chr3 24129541 24129907 + 2.5 NA intron (NM_001354708, intron 8 of 9) intron (NM_001354708, intron 8 of 9) -21600 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 354.5-12 chr17 72612664 72612922 + 2.5 NA intron (NR_033876, intron 3 of 4) intron (NR_033876, intron 3 of 4) -19989 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 497.5-8 chr2 75238325 75238548 + 2.5 NA Intergenic L1MC4|LINE|L1 -38916 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 342.5-39 chr9 125348335 125348647 + 2.5 NA intron (NM_001282679, intron 20 of 27) intron (NM_001282679, intron 20 of 27) 86665 NM_001354295 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 332-16 chr2 96885005 96885162 + 2.5 NA intron (NM_001122646, intron 14 of 16) intron (NM_001122646, intron 14 of 16) 10079 NM_001172667 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 427.5 chr1 91804933 91805276 + 2.5 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 81047 NR_036634 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 476-19 chr2 135663013 135663472 + 2.5 NA intron (NM_001282798, intron 18 of 25) intron (NM_001282798, intron 18 of 25) -2155 NR_029672 406915 NR_029672 ENSG00000207654 MIR128-1 MIR128A|MIRN128-1|MIRN128A|mir-128-1 microRNA 128-1 ncRNA 451.5-23 chr9 28384382 28384711 + 2.5 NA intron (NM_152570, intron 3 of 6) L1MEh|LINE|L1 334759 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 595-7 chr17 68585847 68586257 + 2.5 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) 15315 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 821.5 chrX 65644922 65645311 + 2.5 NA Intergenic Intergenic -22538 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 411-13 chr14 40831252 40831561 + 2.5 NA Intergenic Intergenic -123305 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 397-33 chr8 85624918 85625146 + 2.5 NA Intergenic MIR|SINE|MIR 30644 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 310-17 chr17 66174282 66174490 + 2.5 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 17506 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 332-38 chr7 12730892 12731062 + 2.5 NA Intergenic Intergenic 43344 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 230-19 chr2 68083809 68083935 + 2.5 NA Intergenic L1ME2|LINE|L1 -20868 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 403-31 chr3 120780125 120780317 + 2.5 NA intron (NM_005513, intron 4 of 4) L2a|LINE|L2 37477 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 389-20 chr2 75569251 75569416 + 2.5 NA intron (NM_032181, intron 1 of 3) L2b|LINE|L2 386 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 346.5-5 chr11 48199786 48200071 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -16882 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 296.5-3 chr1 192069262 192069474 + 2.5 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -89094 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 313-13 chr14 72320459 72320681 + 2.5 NA intron (NM_001370288, intron 2 of 16) AluY|SINE|Alu -196250 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 492-16 chr18 2260954 2261296 + 2.5 NA Intergenic Intergenic 310380 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 565.5 chr1 108986508 108986777 + 2.5 NA exon (NM_001142550, exon 10 of 15) exon (NM_001142550, exon 10 of 15) -23143 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 524-20 chr8 131915046 131915467 + 2.5 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) -1517 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 429.5-20 chr8 89045682 89045886 + 2.5 NA Intergenic L1ME3A|LINE|L1 711927 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 469-17 chr2 192576147 192576427 + 2.5 NA Intergenic MLT2B2|LTR|ERVL -173558 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 373.5-15 chr20 21351280 21351770 + 2.5 NA intron (NM_001317960, intron 20 of 29) L1M4|LINE|L1 46001 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 595-15 chr8 121322379 121322676 + 2.5 NA Intergenic Intergenic -316819 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 329.5-14 chr22 44447168 44447374 + 2.5 NA Intergenic L1M5|LINE|L1 3944 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 458.5-2 chr10 43844964 43845168 + 2.5 NA promoter-TSS (NR_033923) promoter-TSS (NR_033923) -240 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 403-20 chr19 12097629 12097807 + 2.5 NA intron (NM_001348163, intron 2 of 3) intron (NM_001348163, intron 2 of 3) 5421 NM_001348163 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 419 chr1 6067631 6067862 + 2.5 NA intron (NM_001199862, intron 2 of 15) intron (NM_001199862, intron 2 of 15) 21858 NM_001199862 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 316-31 chr4 82368743 82368948 + 2.5 NA intron (NM_001003810, intron 1 of 6) intron (NM_001003810, intron 1 of 6) 5146 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 432.5-9 chr18 78266463 78266666 + 2.5 NA Intergenic L1MD|LINE|L1 -272837 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 865.5-2 chr11 60658632 60659187 + 2.5 NA intron (NR_026946, intron 5 of 6) intron (NR_026946, intron 5 of 6) -40703 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 380.5-27 chr7 96187151 96187468 + 2.5 NA intron (NM_001160210, intron 9 of 17) intron (NM_001160210, intron 9 of 17) 32447 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 468.5-13 chr7 50019214 50019601 + 2.5 NA intron (NM_001159878, intron 5 of 7) intron (NM_001159878, intron 5 of 7) 73839 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 480-18 chr2 205971742 205972025 + 2.5 NA Intergenic Intergenic 114291 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 1077.5 chr1 174729313 174730034 + 2.5 NA intron (NM_001366451, intron 2 of 12) L1PA16|LINE|L1 28678 NM_001366453 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 312-8 chr17 62142820 62143050 + 2.5 NA Intergenic L1MB3|LINE|L1 -77657 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 583-8 chr3 24529166 24529530 + 2.5 NA Intergenic L1MC4|LINE|L1 -33640 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 665 chr1 66612171 66612504 + 2.5 NA intron (NM_001350218, intron 1 of 22) MSTB1|LTR|ERVL-MaLR -16103 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 454-2 chr10 11169188 11169461 + 2.5 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 4294 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 893.5-2 chr3 99581491 99581929 + 2.5 NA Intergenic Intergenic -56884 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 537-10 chr18 2588492 2588994 + 2.5 NA intron (NM_006101, intron 8 of 16) intron (NM_006101, intron 8 of 16) 17186 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 440-3 chr1 169744010 169744296 + 2.5 NA Intergenic L2a|LINE|L2 -10074 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 426-35 chr4 100205883 100206160 + 2.5 NA intron (NR_125924, intron 4 of 4) intron (NR_125924, intron 4 of 4) -15553 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 478-19 chr2 190035634 190035843 + 2.5 NA Intergenic L1ME1|LINE|L1 26991 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 175.5-25 chr5 72656617 72656742 + 2.5 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 3990 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 305.5-19 chr2 225882147 225882309 + 2.5 NA Intergenic Intergenic -260566 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 373.5-17 chr20 59520171 59520509 + 2.5 NA Intergenic L1MA9|LINE|L1 -57169 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 274-11 chr14 75117164 75117336 + 2.5 NA exon (NM_001329238, exon 6 of 22) exon (NM_001329238, exon 6 of 22) 9798 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 506.5-12 chr7 11489088 11489578 + 2.5 NA intron (NM_015204, intron 6 of 26) MER67D|LTR|ERV1 342865 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 548-8 chr2 39099125 39099453 + 2.5 NA intron (NM_005633, intron 1 of 22) L1MB8|LINE|L1 21174 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 305-29 chr22 33671630 33671940 + 2.5 NA intron (NM_133642, intron 2 of 14) MER85|DNA|PiggyBac 33135 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 273.5-21 chr4 106916320 106916541 + 2.5 NA Intergenic Intergenic 119883 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 339.5-19 chr4 22305352 22305487 + 2.5 NA Intergenic Intergenic 34247 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 645.5-6 chr18 24656702 24657139 + 2.5 NA intron (NR_040033, intron 1 of 2) intron (NR_040033, intron 1 of 2) 28738 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 618-6 chr11 114713458 114713878 + 2.5 NA Intergenic Charlie25|DNA|hAT-Charlie 35141 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 734-4 chr3 173293912 173294246 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -101873 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 542-5 chr12 117346311 117346646 + 2.5 NA intron (NM_000620, intron 1 of 28) AluSx|SINE|Alu 15148 NM_000620 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 356.5-21 chr2 65875866 65876160 + 2.5 NA Intergenic L1PA16|LINE|L1 -443414 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 417-29 chr3 126600237 126600517 + 2.5 NA Intergenic Intergenic -41445 NM_152533 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 385-16 chr18 45688846 45689079 + 2.5 NA Intergenic Intergenic -35219 NM_001308279 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 246.5-9 chr13 85448773 85448881 + 2.5 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 85224 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 362-25 chr4 84277079 84277426 + 2.5 NA intron (NR_125909, intron 4 of 8) MIRb|SINE|MIR 21917 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 372-17 chr14 89084115 89084361 + 2.5 NA Intergenic Intergenic 259587 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 469-22 chr5 92380258 92380516 + 2.5 NA Intergenic Intergenic -997070 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 368.5-6 chr10 34146847 34147047 + 2.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -374267 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 325-8 chr2 53029076 53029300 + 2.5 NA Intergenic Intergenic -326573 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 290-13 chr18 3586274 3586460 + 2.5 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) -7747 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 253-14 chr2 221951071 221951205 + 2.5 NA Intergenic Intergenic -347009 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 286-11 chr14 73460360 73460663 + 2.5 NA TTS (NR_135251) TTS (NR_135251) -1931 NM_001005745 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 366-9 chr18 47097392 47097604 + 2.5 NA intron (NM_001353909, intron 12 of 12) L1MC5a|LINE|L1 53002 NM_032124 84064 Hs.465041 NM_032124 ENSG00000167220 HDHD2 3110052N05Rik|HEL-S-301 haloacid dehalogenase like hydrolase domain containing 2 protein-coding 516.5-5 chr18 66606270 66606925 + 2.5 NA Intergenic Intergenic -2507 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 310-42 chr8 118170432 118170576 + 2.5 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -58685 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 494.5-4 chr13 56410073 56410501 + 2.5 NA Intergenic L1MA3|LINE|L1 -730631 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 717-2 chr14 49960780 49961232 + 2.5 NA Intergenic Intergenic -5393 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 358-8 chr10 52867882 52868133 + 2.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -96307 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 342.5-5 chr10 93433956 93434130 + 2.5 NA intron (NM_013451, intron 3 of 53) intron (NM_013451, intron 3 of 53) 48291 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 490.5-15 chr5 45770941 45771261 + 2.5 NA Intergenic Intergenic -74721 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 794.5-4 chr7 113675608 113676021 + 2.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 243195 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 172-8 chr16 68995623 68995733 + 2.5 NA intron (NM_024562, intron 15 of 17) intron (NM_024562, intron 15 of 17) -109975 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 367.5-7 chr10 126629345 126629746 + 2.5 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 40965 NM_001350922 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 395.5-30 chr7 7648011 7648197 + 2.5 NA intron (NM_002947, intron 4 of 7) intron (NM_002947, intron 4 of 7) 7352 NM_001302349 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 487-21 chr2 176852464 176852760 + 2.5 NA Intergenic Intergenic 214858 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 391-7 chr15 33816127 33816364 + 2.5 NA intron (NM_001243996, intron 73 of 102) intron (NM_001243996, intron 73 of 102) -152252 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 547-19 chr7 144709904 144710217 + 2.5 NA intron (NM_001042482, intron 3 of 7) intron (NM_001042482, intron 3 of 7) 28838 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 207-16 chr21 33075125 33075235 + 2.5 NA Intergenic Intergenic 5039 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 1050.5 chr16 11777385 11778134 + 2.5 NA intron (NM_014153, intron 4 of 22) AluSp|SINE|Alu 19499 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 512-15 chr6 3184195 3184444 + 2.5 NA intron (NR_038296, intron 2 of 2) MER77B|LTR|ERVL 11448 NR_038295 100507194 Hs.678053 NR_038295 ENSG00000230269 LINC02525 - long intergenic non-protein coding RNA 2525 ncRNA 331 chr1 35085764 35085916 + 2.5 NA intron (NM_001319955, intron 1 of 8) Zaphod|DNA|hAT-Tip100 6455 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 244.5-15 chr15 93047331 93047530 + 2.5 NA intron (NM_001166286, intron 2 of 2) intron (NM_001166286, intron 2 of 2) 25726 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 236-8 chr13 42125316 42125433 + 2.5 NA intron (NM_178009, intron 1 of 29) MIRb|SINE|MIR -12668 NR_123715 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 976-2 chr21 27371777 27372276 + 2.5 NA Intergenic Intergenic -350353 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 441.5-20 chr9 22931313 22931542 + 2.5 NA Intergenic Intergenic 285227 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 451.5-14 chr2 197460235 197460451 + 2.5 NA intron (NM_001320820, intron 2 of 4) AluSg|SINE|Alu 6579 NM_001320819 80219 Hs.606592 NM_025147 ENSG00000115520 COQ10B - coenzyme Q10B protein-coding 531.5-8 chr4 55850690 55850988 + 2.5 NA Intergenic MIR|SINE|MIR -2809 NM_001024924 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 545.5-6 chr2 65818897 65819177 + 2.5 NA Intergenic L2-3_Crp|LINE|L2 -386438 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 508-15 chr21 15594979 15595400 + 2.5 NA Intergenic L1MA1|LINE|L1 -134745 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 476-11 chr12 2591997 2592420 + 2.5 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 80012 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 433.5-16 chr2 69323281 69323472 + 2.5 NA 3' UTR (NM_001244710, exon 20 of 20) 3' UTR (NM_001244710, exon 20 of 20) 63851 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 329.5 chr1 6853875 6854110 + 2.5 NA intron (NM_001349608, intron 2 of 21) L1MEg|LINE|L1 68538 NM_001195563 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 556.5-3 chr10 52546125 52546376 + 2.5 NA Intergenic L2c|LINE|L2 -75717 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 311-14 chr19 53938303 53938545 + 2.5 NA intron (NM_031896, intron 3 of 4) L2a|LINE|L2 -24513 NM_031895 59283 Hs.631595 NM_031895 ENSG00000142408 CACNG8 - calcium voltage-gated channel auxiliary subunit gamma 8 protein-coding 487.5-8 chr11 104861278 104861506 + 2.5 NA Intergenic L1MC1|LINE|L1 37278 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 439-13 chr4 80636210 80636403 + 2.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 300586 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 468-16 chr2 59369440 59369760 + 2.5 NA Intergenic Intergenic 151892 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 286.5-3 chr1 166138653 166138792 + 2.5 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 16076 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 460.5-11 chr18 41163007 41163231 + 2.5 NA Intergenic Intergenic 357558 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 694-10 chr6 129453771 129454169 + 2.5 NA intron (NM_000426, intron 46 of 64) (ATA)n|Simple_repeat|Simple_repeat 256207 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 394-9 chr15 25440052 25440288 + 2.5 NA Intergenic AluJr4|SINE|Alu -1114 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 602.5-9 chr5 131381433 131381727 + 2.5 NA intron (NM_001038702, intron 2 of 4) AluSq10|SINE|Alu 117571 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 397-17 chr18 37156682 37157009 + 2.5 NA intron (NR_136303, intron 8 of 13) L2|LINE|L2 -117615 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 887.5-2 chr4 47891832 47892310 + 2.5 NA intron (NR_103795, intron 11 of 23) L1MEc|LINE|L1 -22156 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 439-21 chr8 117724920 117725497 + 2.5 NA Intergenic Intergenic 195705 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 554-20 chr3 155830429 155830856 + 2.5 NA intron (NM_001363883, intron 2 of 3) intron (NM_001363883, intron 2 of 3) 23764 NM_001363883 9197 Hs.478031 NM_004733 ENSG00000169359 SLC33A1 ACATN|AT-1|AT1|CCHLND|SPG42 solute carrier family 33 member 1 protein-coding 514-7 chr14 68216461 68217148 + 2.5 NA intron (NM_133509, intron 7 of 10) L2c|LINE|L2 393212 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 343.5-8 chr11 70578213 70578511 + 2.5 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -52732 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 452-21 chr4 30549063 30549376 + 2.5 NA Intergenic Intergenic -171150 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 479.5-6 chr20 49629956 49630297 + 2.5 NA Intergenic A-rich|Low_complexity|Low_complexity -61989 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 227-32 chr6 98590752 98590935 + 2.5 NA Intergenic Intergenic 240857 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 477.5-2 chr1 143215740 143216010 + 2.5 NA Intergenic (ATCGAATGGA)n|Simple_repeat|Simple_repeat 206717 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 428.5-17 chr3 97769501 97769848 + 2.5 NA intron (NR_136602, intron 2 of 7) L1MA4|LINE|L1 4916 NR_136595 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 678.5-4 chr4 109820932 109821395 + 2.5 NA intron (NM_018983, intron 4 of 6) MER3|DNA|hAT-Charlie 5401 NM_018983 54433 Hs.69851 NM_018983 ENSG00000109534 GAR1 NOLA1 GAR1 ribonucleoprotein protein-coding 427.5-25 chr7 7428603 7428980 + 2.5 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 107082 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 278.5-18 chr4 57203248 57203422 + 2.5 NA intron (NR_034081, intron 3 of 4) intron (NR_034081, intron 3 of 4) -92950 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 310-27 chr21 18327029 18327388 + 2.5 NA intron (NM_002772, intron 15 of 24) intron (NM_002772, intron 15 of 24) 76577 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 494-16 chr5 130363572 130363858 + 2.5 NA Intergenic Intergenic 459250 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 699.5-6 chr2 123649856 123650250 + 2.5 NA Intergenic Intergenic 375121 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 327-29 chr20 32239947 32240179 + 2.5 NA Intergenic Intergenic 2268 NR_031726 100302183 NR_031726 ENSG00000284125 MIR1825 MIRN1825|hsa-mir-1825 microRNA 1825 ncRNA 405.5-12 chr22 40751177 40751414 + 2.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger 62663 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 258.5-25 chr6 40007269 40007474 + 2.5 NA Intergenic LTR40a|LTR|ERVL -72909 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 858.5 chr17 73827440 73827923 + 2.5 NA intron (NR_027146, intron 1 of 3) intron (NR_027146, intron 1 of 3) 856 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 444.5-19 chr7 86135583 86135801 + 2.5 NA Intergenic Intergenic -508217 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 230-13 chr16 61897477 61897612 + 2.5 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 138894 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 410.5 chr13 72941034 72941208 + 2.5 NA intron (NR_146206, intron 14 of 16) L1ME1|LINE|L1 -113855 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 348-21 chr2 148513961 148514166 + 2.5 NA TTS (NM_018328) TTS (NM_018328) -130688 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 765-2 chr10 103313741 103314130 + 2.5 NA intron (NM_001011663, intron 9 of 9) MIR|SINE|MIR 36797 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 501-23 chr7 127343807 127344122 + 2.5 NA Intergenic L1MC|LINE|L1 48744 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 297-13 chr18 59703326 59703598 + 2.5 NA Intergenic FRAM|SINE|Alu -6039 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 248.5-14 chr2 62933269 62933395 + 2.5 NA intron (NM_001142615, intron 10 of 22) Charlie1|DNA|hAT-Charlie 114379 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 428-19 chr3 39231140 39231571 + 2.5 NA Intergenic L1MDa|LINE|L1 -38760 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 838.5-3 chr3 123922246 123922683 + 2.5 NA intron (NM_001366336, intron 8 of 8) L1MA7|LINE|L1 -38132 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 456-15 chr2 18897159 18897446 + 2.5 NA Intergenic Intergenic 129669 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 390.5-30 chr8 56469179 56469457 + 2.5 NA intron (NR_125813, intron 1 of 3) L2|LINE|L2 -22677 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 325.5-24 chr5 77877839 77878051 + 2.5 NA Intergenic AluJb|SINE|Alu -6711 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 486-34 chr4 124434335 124434593 + 2.5 NA Intergenic L3|LINE|CR1 123970 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 637.5-9 chr8 137920594 137920889 + 2.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 162804 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 563-14 chr6 58432482 58432909 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -471249 NR_125727 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 222.5-2 chr10 121059790 121059912 + 2.5 NA Intergenic L1M4a1|LINE|L1 208489 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 329.5-22 chr8 27997569 27997871 + 2.5 NA Intergenic AluSz|SINE|Alu -5047 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 420-27 chr3 186552384 186552557 + 2.5 NA intron (NM_001134415, intron 6 of 7) MER90a|LTR|ERV1 -8090 NM_017541 1427 Hs.376209 NM_017541 ENSG00000213139 CRYGS CRYG8|CTRCT20 crystallin gamma S protein-coding 748.5-5 chr5 102987405 102987902 + 2.5 NA intron (NM_001364592, intron 15 of 24) L1MA4A|LINE|L1 121830 NR_033440 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 505.5-6 chr11 88083446 88083804 + 2.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 91818 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 319-20 chr2 68680438 68680807 + 2.5 NA Intergenic L2a|LINE|L2 37034 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 351-31 chr3 110416526 110416753 + 2.5 NA Intergenic Intergenic 653320 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 549-18 chr7 31038961 31039226 + 2.5 NA Intergenic Intergenic -13215 NM_001199636 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 389-33 chr3 125477568 125477771 + 2.5 NA intron (NM_003794, intron 7 of 13) intron (NM_003794, intron 7 of 13) 42533 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 517-8 chr2 12922629 12922946 + 2.5 NA Intergenic Intergenic 84226 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 425-7 chr1 233391347 233391712 + 2.5 NA Intergenic L1M4b|LINE|L1 63805 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 407.5-15 chr3 186918564 186918822 + 2.5 NA Intergenic Intergenic -11833 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 463-6 chr11 32974051 32974311 + 2.5 NA intron (NM_001076786, intron 11 of 12) AluJr|SINE|Alu -41697 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 327.5-28 chr8 47615864 47616024 + 2.5 NA intron (NM_001080394, intron 10 of 19) L1MB5|LINE|L1 -38144 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 420-6 chr11 42634434 42634637 + 2.5 NA Intergenic MIR3|SINE|MIR -380845 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 611.5 chr1 43192015 43192332 + 2.5 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -19603 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 245-14 chr15 44069392 44069504 + 2.5 NA intron (NM_032892, intron 1 of 13) L1MD1|LINE|L1 124998 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 339-22 chr3 48306291 48306513 + 2.5 NA TTS (NM_001080525) TTS (NM_001080525) -4717 NM_001308431 10201 Hs.465558 NM_005793 ENSG00000172113 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 215.5-14 chr14 64984001 64984101 + 2.5 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) -2844 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 434.5-6 chr14 48075411 48075584 + 2.5 NA Intergenic L1MC4|LINE|L1 -280483 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 276.5-35 chr6 127486712 127486870 + 2.5 NA intron (NM_001012279, intron 4 of 11) intron (NM_001012279, intron 4 of 11) -27402 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 181-18 chr7 27900427 27900532 + 2.5 NA intron (NM_175061, intron 2 of 4) MER63B|DNA|hAT-Blackjack 160384 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 250-20 chr2 74602007 74602147 + 2.5 NA intron (NM_001321739, intron 4 of 10) X7B_LINE|LINE|CR1 45960 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 569.5-4 chr12 27852817 27853210 + 2.5 NA Intergenic Intergenic 72780 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 519.5-21 chr9 116629853 116630217 + 2.5 NA intron (NM_014010, intron 16 of 21) intron (NM_014010, intron 16 of 21) 57180 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 317-8 chr14 99474874 99475000 + 2.5 NA intron (NM_199123, intron 1 of 8) intron (NM_199123, intron 1 of 8) 5922 NM_199123 84193 Hs.510407 NM_032233 ENSG00000183576 SETD3 C14orf154|hSETD3 SET domain containing 3, actin histidine methyltransferase protein-coding 316-17 chr2 134831277 134831564 + 2.5 NA Intergenic L1PA2|LINE|L1 -7196 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 541-16 chr5 111951966 111952388 + 2.5 NA intron (NR_046678, intron 2 of 3) intron (NR_046678, intron 2 of 3) 24755 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 353-34 chr7 6489729 6489949 + 2.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -5687 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 587.5-13 chr2 89772392 89773047 + 2.5 NA Intergenic Intergenic -134812 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 302.5-19 chr2 57917206 57917363 + 2.5 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 9633 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 626-13 chr3 184900400 184900857 + 2.5 NA intron (NM_001009921, intron 23 of 46) intron (NM_001009921, intron 23 of 46) 88121 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 220-22 chr4 56255553 56255684 + 2.5 NA intron (NM_020722, intron 2 of 10) ERVL-B4-int|LTR|ERVL 85423 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 542-17 chr22 27737350 27737841 + 2.5 NA Intergenic L1ME2|LINE|L1 64161 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 521-10 chr3 39747219 39747465 + 2.5 NA Intergenic Intergenic -61572 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 361-22 chr20 41479372 41479669 + 2.5 NA intron (NM_032221, intron 16 of 36) L1MEf|LINE|L1 -112702 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 433.5-13 chr19 32706303 32706565 + 2.5 NA intron (NM_001105570, intron 1 of 2) AluSp|SINE|Alu -13333 NM_001366102 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 467.5-17 chr6 87729034 87729464 + 2.5 NA Intergenic Intergenic -27016 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 381-32 chr8 127912338 127912583 + 2.5 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 36263 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 426-16 chr19 3340185 3340474 + 2.5 NA Intergenic Intergenic -19301 NM_001245005 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 518.5-7 chr12 129610757 129610999 + 2.5 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 293147 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 456-5 chr1 230010763 230011344 + 2.5 NA Intergenic L1ME4b|LINE|L1 8336 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 327.5 chr1 191320458 191320615 + 2.5 NA Intergenic Intergenic -92038 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 211.5-20 chr2 152743001 152743117 + 2.5 NA intron (NR_146431, intron 3 of 3) intron (NR_146431, intron 3 of 3) 24422 NR_146429 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 356.5-13 chr12 87585360 87585639 + 2.5 NA Intergenic Intergenic -183313 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 301-18 chr15 83283230 83283383 + 2.5 NA 5' UTR (NM_001301206, exon 1 of 5) 5' UTR (NM_001301206, exon 1 of 5) 151 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 374.5-5 chr12 12913022 12913238 + 2.5 NA 3' UTR (NM_003979, exon 4 of 4) 3' UTR (NM_003979, exon 4 of 4) -2699 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 386.5-3 chr1 184141372 184141541 + 2.5 NA Intergenic Intergenic 89726 NM_001363643 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 871 chr17 14071511 14072455 + 2.5 NA intron (NM_001303, intron 1 of 6) intron (NM_001303, intron 1 of 6) 2479 NM_001303 1352 Hs.462278 NM_001303 ENSG00000006695 COX10 - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 protein-coding 420-28 chr4 54129806 54129993 + 2.5 NA Intergenic L1MA2|LINE|L1 29736 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 506-21 chr4 130005066 130005660 + 2.5 NA Intergenic Intergenic 233744 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 356.5-7 chr10 120648893 120649067 + 2.5 NA Intergenic Intergenic 51031 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 270-7 chr14 62106217 62106339 + 2.5 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -11079 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 484.5-22 chr6 158375354 158375682 + 2.5 NA intron (NM_020245, intron 1 of 13) L2c|LINE|L2 52536 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 344-10 chr13 94306438 94306704 + 2.5 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -118580 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 256-15 chr2 153368891 153369203 + 2.5 NA Intergenic L1MEf|LINE|L1 109715 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 454.5-6 chr16 61546860 61547142 + 2.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 489437 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 548-18 chr7 51912497 51912882 + 2.5 NA Intergenic MER20|DNA|hAT-Charlie -519433 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 204-5 chr10 7859357 7859516 + 2.5 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 40931 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 415-24 chr5 3605934 3606239 + 2.5 NA Intergenic ORSL|DNA|hAT-Tip100 10254 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 381.5-30 chr9 127208021 127208335 + 2.5 NA intron (NM_014636, intron 14 of 18) intron (NM_014636, intron 14 of 18) -55484 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 528-8 chr12 58535253 58535520 + 2.5 NA Intergenic Intergenic -56316 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 613.5-7 chr20 34346854 34347220 + 2.5 NA Intergenic AluSz|SINE|Alu -16236 NM_001324197 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 554.5-16 chrX 118086132 118086390 + 2.5 NA intron (NM_001168301, intron 1 of 7) L1PB3|LINE|L1 30604 NM_001168302 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 334-25 chr6 35347228 35347381 + 2.5 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 4746 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 572-4 chr17 14739969 14740254 + 2.5 NA Intergenic Intergenic -274694 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 401.5-28 chr6 66280679 66280903 + 2.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 492912 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 784.5 chr16 63518075 63518417 + 2.5 NA Intergenic L1M4b|LINE|L1 -1481808 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 598.5-8 chr20 49814866 49815220 + 2.5 NA non-coding (NR_048540, exon 2 of 12) non-coding (NR_048540, exon 2 of 12) 2215 NR_048540 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 255.5-12 chr18 49187900 49188040 + 2.5 NA intron (NM_001353210, intron 13 of 16) intron (NM_001353210, intron 13 of 16) -138202 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 311.5-15 chr11 105478253 105478393 + 2.5 NA Intergenic MLT2C1|LTR|ERVL -131750 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 536-11 chr21 14952323 14952744 + 2.5 NA Intergenic L1MC2|LINE|L1 -33865 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 631.5-6 chr9 69692779 69693243 + 2.5 NA Intergenic L1MA8|LINE|L1 -20640 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 469.5-12 chr3 26611270 26611557 + 2.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -11393 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 333-16 chr2 100570116 100570264 + 2.5 NA intron (NM_024065, intron 4 of 5) intron (NM_024065, intron 4 of 5) 7197 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 450.5 chr1 102258640 102258843 + 2.5 NA Intergenic Intergenic -261507 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 238-14 chr13 89891253 89891349 + 2.5 NA Intergenic L1MB3|LINE|L1 228416 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 289-39 chr7 41337530 41337772 + 2.5 NA Intergenic Intergenic 236047 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 937.5-3 chr8 123081719 123082172 + 2.5 NA intron (NM_001363156, intron 2 of 19) THE1B|LTR|ERVL-MaLR 8696 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 478-15 chr2 76638863 76639085 + 2.5 NA Intergenic Intergenic -346991 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 375-26 chr6 38568285 38568444 + 2.5 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 27703 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 409-28 chr5 127579654 127579817 + 2.5 NA Intergenic L1MA9|LINE|L1 62095 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 437.5-15 chr9 71680456 71680662 + 2.5 NA Intergenic MER5A|DNA|hAT-Charlie 87954 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 457-26 chr6 56670854 56671083 + 2.5 NA intron (NM_001144770, intron 6 of 94) MIR|SINE|MIR -28079 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 373-24 chr2 112221984 112222265 + 2.5 NA intron (NM_032494, intron 8 of 8) L1PA14|LINE|L1 32918 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 883.5-5 chr8 114773528 114773982 + 2.5 NA Intergenic L1MEc|LINE|L1 894258 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 627-8 chr2 155397244 155397514 + 2.5 NA Intergenic MER77B|LTR|ERVL 698684 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 439-11 chr4 40790719 40790944 + 2.5 NA intron (NM_024677, intron 8 of 11) intron (NM_024677, intron 8 of 11) 40876 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 389-11 chr14 80870161 80870476 + 2.5 NA intron (NM_152446, intron 8 of 24) L1M3e|LINE|L1 71420 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 640.5-11 chr6 48222429 48222834 + 2.5 NA Intergenic Intergenic -153942 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 593.5-10 chr9 33118823 33119225 + 2.5 NA intron (NM_001497, intron 3 of 5) AluSx1|SINE|Alu 10332 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 529.5-9 chr15 57828708 57829133 + 2.5 NA Intergenic L3|LINE|CR1 122206 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 274.5-6 chr11 115426427 115426586 + 2.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 29750 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 324.5-10 chr11 12587230 12587490 + 2.5 NA Intergenic L2b|LINE|L2 -87061 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 324-25 chr20 47670408 47670640 + 2.5 NA intron (NM_198596, intron 11 of 20) L1MB3|LINE|L1 115540 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 485-19 chrX 80716130 80716567 + 2.5 NA intron (NM_153252, intron 19 of 40) L1MB4|LINE|L1 93529 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 551-14 chr17 78550066 78550340 + 2.5 NA intron (NM_173628, intron 16 of 80) intron (NM_173628, intron 16 of 80) 27191 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 561-25 chr8 88769226 88769498 + 2.5 NA Intergenic Intergenic -441879 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 328.5-23 chr2 124928954 124929119 + 2.5 NA Intergenic Intergenic 903749 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 382.5-8 chr15 61762144 61762341 + 2.5 NA Intergenic L3|LINE|CR1 32324 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 272.5-5 chr10 104202149 104202353 + 2.5 NA intron (NM_025145, intron 8 of 37) L1MEd|LINE|L1 16632 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 424.5-3 chr11 23262420 23262622 + 2.5 NA Intergenic MER115|DNA|hAT-Tip100 156669 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 319.5-24 chr4 26366412 26366597 + 2.5 NA intron (NM_203284, intron 2 of 11) AluSc8|SINE|Alu 45276 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 340.5 chr1 40378882 40379070 + 2.5 NA intron (NM_001198978, intron 1 of 9) AluSq2|SINE|Alu 4343 NM_001198978 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 646.5 chr1 169504683 169505060 + 2.5 NA Intergenic L1PA8|LINE|L1 -18901 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 483.5 chr1 205210472 205210741 + 2.5 NA intron (NM_199462, intron 1 of 11) intron (NM_199462, intron 1 of 11) 1096 NM_015375 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 310-6 chr10 48785203 48785434 + 2.5 NA intron (NM_020945, intron 19 of 61) L1MD2|LINE|L1 99855 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 353.5-26 chr9 101577890 101578128 + 2.5 NA intron (NM_133445, intron 7 of 8) intron (NM_133445, intron 7 of 8) 16960 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 444-24 chr5 115478598 115478863 + 2.5 NA Intergenic Intergenic 66045 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 692-10 chr5 45694545 45694871 + 2.5 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 1672 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 297.5-36 chr8 142479947 142480099 + 2.5 NA intron (NM_001702, intron 9 of 30) MIR|SINE|MIR 30374 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 601.5-10 chr3 22994495 22994904 + 2.5 NA Intergenic Intergenic 207879 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 350.5-7 chr17 57578246 57578406 + 2.5 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) 30086 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 266-44 chr9 72533441 72533621 + 2.5 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 11730 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 395.5-16 chr2 108381083 108381263 + 2.5 NA intron (NR_135779, intron 1 of 2) intron (NR_135779, intron 1 of 2) 3219 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 360-29 chr3 23927142 23927425 + 2.5 NA Intergenic AluJr|SINE|Alu 10151 NM_001253383 6138 Hs.381219 NM_002948 ENSG00000174748 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 415.5-13 chr5 83187362 83187558 + 2.5 NA intron (NM_001318012, intron 3 of 7) MLT1D|LTR|ERVL-MaLR 109913 NM_003401 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 416-13 chr16 76736866 76737158 + 2.5 NA Intergenic L2|LINE|L2 102014 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 565-5 chr2 149571472 149572002 + 2.5 NA intron (NM_015702, intron 6 of 7) AluY|SINE|Alu -15621 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 680 chr10 102884479 102884866 + 2.5 NA intron (NM_020682, intron 9 of 10) AluSq2|SINE|Alu 15202 NM_020682 57412 Hs.720370 NM_020682 ENSG00000214435 AS3MT CYT19 arsenite methyltransferase protein-coding 731.5-3 chr6 51212371 51212865 + 2.5 NA Intergenic MIR|SINE|MIR 393747 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 510-7 chr12 100852832 100853148 + 2.5 NA intron (NM_001286615, intron 1 of 27) L1ME4a|LINE|L1 -48656 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 293.5-20 chr2 112210187 112210367 + 2.5 NA Intergenic Intergenic 44765 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 210-12 chr2 20349317 20349427 + 2.5 NA intron (NM_001352920, intron 1 of 19) intron (NM_001352920, intron 1 of 19) 1472 NM_001352930 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 628.5-3 chr11 24398185 24398485 + 2.5 NA Intergenic Intergenic -98718 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 291.5 chr1 111773097 111773223 + 2.5 NA Intergenic Intergenic 17259 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 378-31 chr8 50325660 50325983 + 2.5 NA intron (NR_135797, intron 2 of 20) L1MCa|LINE|L1 161690 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 460-13 chr2 181718579 181719184 + 2.5 NA Intergenic Intergenic -38216 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 407.5-14 chr3 67211441 67211612 + 2.5 NA Intergenic Intergenic -13938 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 296-22 chr21 31676656 31676792 + 2.5 NA intron (NM_020706, intron 19 of 19) L1MB8|LINE|L1 17102 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 242-28 chr7 11725268 11725410 + 2.5 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 106859 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 527.5-8 chr2 151484621 151484895 + 2.5 NA TTS (NM_004543) TTS (NM_004543) 74856 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 601.5-5 chr16 78483922 78484255 + 2.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 384434 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 515-11 chr2 54974762 54975207 + 2.5 NA intron (NM_020532, intron 5 of 8) intron (NM_020532, intron 5 of 8) 35288 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 422-7 chr11 84593802 84594091 + 2.5 NA intron (NM_001351274, intron 5 of 26) MER103C|DNA|hAT-Charlie 126996 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 325.5-30 chr8 62734576 62734799 + 2.5 NA intron (NM_001304533, intron 3 of 6) L2|LINE|L2 -243174 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 583.5-5 chr15 89079768 89080245 + 2.5 NA Intergenic L1M4b|LINE|L1 -8450 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 231.5-11 chr19 29195819 29195988 + 2.5 NA Intergenic Intergenic 17248 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1240 chr1 192764247 192764961 + 2.5 NA Intergenic L1MD3|LINE|L1 -44435 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 412-32 chr8 84217376 84217579 + 2.5 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 32811 NM_001354321 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 237-10 chr2 75999286 75999428 + 2.5 NA Intergenic L2b|LINE|L2 -288442 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 652.5-4 chr3 67501039 67501433 + 2.5 NA intron (NM_001177599, intron 7 of 10) intron (NM_001177599, intron 7 of 10) 153378 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 407-34 chr9 30043369 30043703 + 2.5 NA Intergenic L1ME1|LINE|L1 364918 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 402.5-14 chr2 47697988 47698255 + 2.5 NA Intergenic LTR8|LTR|ERV1 -84961 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 545-19 chr5 153599224 153599519 + 2.5 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 107199 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 290.5-11 chr14 51987156 51987321 + 2.5 NA Intergenic Intergenic -2308 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 405.5-2 chr14 65987945 65988431 + 2.5 NA Intergenic Charlie20a|DNA|hAT-Charlie -498183 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 445.5-22 chr6 75928327 75928607 + 2.5 NA intron (NM_001563, intron 15 of 16) AluSx|SINE|Alu 144195 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 545-17 chr5 136324217 136324470 + 2.5 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) -22487 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 250-36 chr6 81118359 81118539 + 2.5 NA Intergenic L1MC1|LINE|L1 634232 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 563-8 chr19 41885870 41886301 + 2.5 NA intron (NM_199002, intron 1 of 28) MIR|SINE|MIR 1642 NM_199002 9138 Hs.631550 NM_004706 ENSG00000076928 ARHGEF1 GEF1|IMD62|LBCL2|LSC|P115-RHOGEF|SUB1.5 Rho guanine nucleotide exchange factor 1 protein-coding 550-3 chr1 201180125 201180504 + 2.5 NA Intergenic MIRc|SINE|MIR -8732 NM_001288564 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 263.5-24 chr7 2514157 2514375 + 2.5 NA intron (NM_001166355, intron 2 of 8) intron (NM_001166355, intron 2 of 8) 1737 NM_001166355 3955 Hs.159142 NM_002304 ENSG00000106003 LFNG SCDO3 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 402.5-27 chr5 101871144 101871448 + 2.5 NA Intergenic L2a|LINE|L2 424988 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 523-27 chr7 83809265 83809584 + 2.5 NA Intergenic Intergenic -160285 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 206.5-37 chr7 80902493 80902575 + 2.5 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 16517 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 390-17 chr21 31692797 31692967 + 2.5 NA intron (NM_020706, intron 12 of 19) intron (NM_020706, intron 12 of 19) 33260 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 312-30 chr5 59273116 59273268 + 2.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 2923 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 303.5-12 chr20 52247389 52247608 + 2.5 NA Intergenic Intergenic -55513 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 277-22 chr18 21235837 21235963 + 2.5 NA Intergenic AluJb|SINE|Alu -6342 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 563.5-6 chr3 105865534 105865894 + 2.5 NA intron (NR_135809, intron 2 of 18) intron (NR_135809, intron 2 of 18) 1877 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 200.5-9 chr11 13596014 13596142 + 2.5 NA Intergenic Intergenic -72590 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 324-42 chr8 121492296 121492515 + 2.5 NA Intergenic Intergenic -146941 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 466-5 chr1 183726174 183726373 + 2.5 NA intron (NM_001297669, intron 2 of 18) L1ME1|LINE|L1 -72957 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 374.5 chr1 57440819 57441097 + 2.5 NA intron (NM_001353980, intron 4 of 5) L1PA16|LINE|L1 -16037 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 388.5-22 chr6 116419760 116419921 + 2.5 NA intron (NM_001322937, intron 3 of 6) intron (NM_001322937, intron 3 of 6) -41535 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 310.5-10 chr11 134100823 134101099 + 2.5 NA intron (NM_001205329, intron 1 of 7) intron (NM_001205329, intron 1 of 7) 31889 NM_032801 83700 Hs.150718 NM_032801 ENSG00000166086 JAM3 JAM-2|JAM-3|JAM-C|JAMC junctional adhesion molecule 3 protein-coding 429-24 chr3 101631519 101631698 + 2.5 NA Intergenic AluJb|SINE|Alu -44822 NR_024407 100009676 Hs.743292 NR_024407 ENSG00000256628 ZBTB11-AS1 - ZBTB11 antisense RNA 1 ncRNA 549.5-11 chr7 33380828 33381123 + 2.5 NA intron (NM_198428, intron 17 of 22) intron (NM_198428, intron 17 of 22) 251411 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 935.5 chr14 69272476 69273317 + 2.5 NA intron (NM_020692, intron 1 of 15) Tigger3c|DNA|TcMar-Tigger 12738 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 422-11 chr15 62792381 62792678 + 2.5 NA intron (NM_015059, intron 42 of 55) intron (NM_015059, intron 42 of 55) -31428 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 247.5-12 chr15 94169945 94170089 + 2.5 NA Intergenic Intergenic -62079 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 622-2 chr10 77603767 77604308 + 2.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 33771 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 527.5-15 chrX 63488732 63489062 + 2.5 NA intron (NR_152612, intron 1 of 2) L1M1|LINE|L1 72198 NR_152612 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 726.5-2 chr11 34899443 34900020 + 2.5 NA intron (NM_015957, intron 1 of 6) HUERS-P3-int|LTR|ERV1 -16399 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 377.5-22 chr9 28891027 28891293 + 2.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -2205 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 663.5-5 chr6 49552392 49552923 + 2.5 NA TTS (NM_001145652) TTS (NM_001145652) 1989 NR_146855 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 188.5-6 chr16 5892022 5892122 + 2.5 NA Intergenic Intergenic -126952 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 660.5-2 chr12 42103498 42103940 + 2.5 NA intron (NM_173601, intron 5 of 7) intron (NM_173601, intron 5 of 7) 41155 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 678.5 chr10 75933919 75934222 + 2.5 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 151309 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 357.5-4 chr12 2486754 2486903 + 2.5 NA intron (NM_001129844, intron 6 of 46) intron (NM_001129844, intron 6 of 46) 185392 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 509.5-2 chr1 226761978 226762185 + 2.5 NA Intergenic MER112|DNA|hAT-Charlie -22906 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 614.5-9 chr5 12838073 12838439 + 2.5 NA Intergenic Intergenic 170397 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 527.5-13 chr8 59575637 59576123 + 2.5 NA Intergenic L1MD2|LINE|L1 456670 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 339.5-24 chr6 85734948 85735177 + 2.5 NA Intergenic MER57A-int|LTR|ERV1 -56329 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 728.5-10 chr8 142375937 142376433 + 2.5 NA intron (NM_001366903, intron 1 of 9) MIRb|SINE|MIR 26997 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 270-14 chr2 59202627 59202828 + 2.5 NA Intergenic Intergenic -14981 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 238-19 chr18 26176563 26176686 + 2.5 NA intron (NM_144662, intron 4 of 6) intron (NM_144662, intron 4 of 6) 42755 NM_144662 143471 Hs.464813 NM_144662 ENSG00000154611 PSMA8 PSMA7L proteasome subunit alpha 8 protein-coding 459.5-17 chr6 43047739 43047944 + 2.5 NA intron (NM_014780, intron 9 of 25) L1MC5a|LINE|L1 6104 NM_001168370 9820 Hs.520136 NM_014780 ENSG00000044090 CUL7 3M1|CUL-7|KIAA0076|dJ20C7.5 cullin 7 protein-coding 317.5-13 chr2 67329008 67329272 + 2.5 NA Intergenic Intergenic -68193 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 350-12 chr17 66967343 66967489 + 2.5 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 2709 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 365-40 chr9 132546190 132546344 + 2.5 NA intron (NM_207417, intron 6 of 6) intron (NM_207417, intron 6 of 6) -36339 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 579.5-16 chr7 91750654 91751004 + 2.5 NA Intergenic L1M2|LINE|L1 129873 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 326-5 chr1 200329305 200329556 + 2.5 NA Intergenic Intergenic 44362 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 485.5-4 chr19 41357725 41357932 + 2.5 NA intron (NM_030578, intron 3 of 3) intron (NM_030578, intron 3 of 3) -3906 NM_000660 7040 Hs.645227 NM_000660 ENSG00000105329 TGFB1 CED|DPD1|IBDIMDE|LAP|TGFB|TGFbeta transforming growth factor beta 1 protein-coding 493.5-20 chr8 83758370 83758711 + 2.5 NA Intergenic MSTD|LTR|ERVL-MaLR 354782 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 287-30 chr4 37440046 37440221 + 2.5 NA intron (NM_001144990, intron 6 of 6) LTR78|LTR|ERV1 -13792 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 384.5-21 chr6 82950001 82950189 + 2.5 NA intron (NR_146807, intron 10 of 10) L1MA3|LINE|L1 115746 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 466.5-5 chr14 47803245 47803709 + 2.5 NA Intergenic Intergenic -8463 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 538.5-6 chr14 33081713 33082141 + 2.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 143048 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 281.5-32 chr5 125026199 125026363 + 2.5 NA Intergenic Intergenic -10550 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 754-3 chr14 67911424 67911913 + 2.5 NA intron (NM_133509, intron 7 of 10) AmnSINE1|SINE|5S-Deu-L2 88076 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 854 chr16 55066052 55066547 + 2.5 NA Intergenic L1ME1|LINE|L1 135100 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 592.5-17 chr9 99831227 99831767 + 2.5 NA intron (NM_006981, intron 3 of 7) intron (NM_006981, intron 3 of 7) 9612 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 655-8 chr18 40934613 40934940 + 2.5 NA Intergenic Intergenic 585901 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 401.5-16 chr2 133946277 133946618 + 2.5 NA Intergenic Intergenic -173488 NM_001371457 343.5-31 chr8 83599992 83600258 + 2.5 NA Intergenic L1MEh|LINE|L1 196367 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 259-10 chr17 76663700 76663842 + 2.5 NA Intergenic MER34A1|LTR|ERV1 -8157 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 205-17 chr18 12516023 12516112 + 2.5 NA intron (NM_020148, intron 4 of 15) intron (NM_020148, intron 4 of 15) 83293 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 425.5-3 chr1 154832709 154832981 + 2.5 NA intron (NM_001204087, intron 1 of 8) intron (NM_001204087, intron 1 of 8) 27031 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 362.5-33 chrX 143540797 143540987 + 2.5 NA Intergenic L1PB3|LINE|L1 -23417 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 467-8 chr12 33443287 33443527 + 2.5 NA Intergenic HAL1|LINE|L1 -3588 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 373-6 chr10 101423309 101423580 + 2.5 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 69279 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 746-5 chr3 186128707 186129095 + 2.5 NA Intergenic AluSz|SINE|Alu -19812 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 174-24 chr5 23757036 23757139 + 2.5 NA Intergenic Intergenic -194261 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 437-8 chr11 17345815 17346296 + 2.5 NA Intergenic Intergenic -5745 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 360.5-7 chr15 76554337 76554670 + 2.5 NA intron (NR_148227, intron 23 of 32) L1PA15|LINE|L1 -32144 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 559-6 chr15 62940468 62940850 + 2.5 NA Intergenic Intergenic -102088 NM_001365779 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 571-6 chr16 48476489 48476904 + 2.5 NA Intergenic L1MCa|LINE|L1 -91283 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 297.5-12 chr15 58229556 58229758 + 2.5 NA Intergenic Intergenic 91276 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 436-22 chr2 177115761 177115975 + 2.5 NA Intergenic L1ME3D|LINE|L1 96543 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 800.5-2 chr14 36371071 36371441 + 2.5 NA Intergenic Intergenic -50580 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 588 chr1 105352962 105353419 + 2.5 NA Intergenic Intergenic 265745 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 270.5-8 chr12 77053708 77053896 + 2.5 NA intron (NM_203394, intron 3 of 12) L1PA15|LINE|L1 11767 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 326.5-17 chr18 8012712 8012854 + 2.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 354251 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 606-3 chr12 57136673 57137076 + 2.5 NA intron (NM_002332, intron 1 of 88) MIR|SINE|MIR 8391 NM_002332 4035 Hs.162757 NM_002332 ENSG00000123384 LRP1 A2MR|APOER|APR|CD91|IGFBP-3R|IGFBP3R|IGFBP3R1|KPA|LRP|LRP1A|TGFBR5 LDL receptor related protein 1 protein-coding 588.5 chr10 115935080 115935364 + 2.5 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 259567 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 460-14 chr3 27399413 27399661 + 2.5 NA intron (NM_001258380, intron 15 of 23) AluJr4|SINE|Alu -30077 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 448.5-19 chr6 50563214 50563456 + 2.5 NA Intergenic AluSz6|SINE|Alu -150209 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 487.5-16 chr2 155024486 155024820 + 2.5 NA Intergenic Intergenic 325958 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 536-3 chr10 53598144 53598481 + 2.5 NA Intergenic MER4CL34|LTR|ERV1 -826612 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 220-12 chr16 202651 202800 + 2.5 NA intron (NM_001330420, intron 5 of 9) L1MC|LINE|L1 22266 NM_005331 3049 Hs.247921 NM_005331 ENSG00000086506 HBQ1 HBQ hemoglobin subunit theta 1 protein-coding 556.5-7 chr16 89844826 89845331 + 2.5 NA intron (NM_032451, intron 1 of 14) intron (NM_032451, intron 1 of 14) 16603 NM_032451 84501 Hs.461786 NM_032451 ENSG00000204991 SPIRE2 Spir-2 spire type actin nucleation factor 2 protein-coding 707.5-3 chr4 6385968 6386407 + 2.5 NA intron (NM_001206994, intron 2 of 9) L1MEf|LINE|L1 -4319 NM_181876 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 740.5-9 chr7 45129111 45129611 + 2.5 NA Intergenic L1MB7|LINE|L1 -17614 NM_030900 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 526.5-20 chr7 127515089 127515407 + 2.5 NA Intergenic Intergenic 38365 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 564-9 chr16 76306040 76306486 + 2.5 NA intron (NM_001322189, intron 2 of 24) intron (NM_001322189, intron 2 of 24) -3589 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 412.5-28 chr6 78965528 78965776 + 2.5 NA intron (NM_017934, intron 29 of 39) intron (NM_017934, intron 29 of 39) 98101 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 329.5-12 chr20 53555674 53555972 + 2.5 NA intron (NR_110051, intron 1 of 5) intron (NR_110051, intron 1 of 5) 3053 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 497-19 chr8 127342951 127343287 + 2.5 NA intron (NR_117099, intron 3 of 3) MIRb|SINE|MIR -57280 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 375.5-25 chr5 175061143 175061341 + 2.5 NA Intergenic AluSz|SINE|Alu -65511 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 495.5-11 chr2 186730938 186731213 + 2.5 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 37015 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 586-10 chr22 30846091 30846460 + 2.5 NA intron (NM_001282741, intron 1 of 12) AluSz|SINE|Alu 23759 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 227.5-10 chr2 114437541 114437694 + 2.5 NA Intergenic Intergenic -5024 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 607-9 chr10 102286941 102287413 + 2.5 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 41645 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 393-32 chr7 24943065 24943373 + 2.5 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 36959 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 578.5-6 chr16 52446761 52447276 + 2.5 NA intron (NM_001146188, intron 5 of 7) intron (NM_001146188, intron 5 of 7) 100125 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 427-29 chr6 134878250 134878580 + 2.5 NA Intergenic Intergenic 71686 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 312-32 chr5 156270491 156270764 + 2.5 NA Intergenic Intergenic -56130 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 468-30 chr4 165509146 165509464 + 2.5 NA Intergenic Intergenic 123063 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 519.5-13 chr3 98676508 98677044 + 2.5 NA Intergenic L1ME3A|LINE|L1 -55460 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 380-9 chr2 147043269 147043468 + 2.5 NA Intergenic L1MC1|LINE|L1 456311 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 255.5-6 chr11 88474578 88474900 + 2.5 NA Intergenic Intergenic -29837 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 336.5-19 chr5 129400813 129400968 + 2.5 NA Intergenic Intergenic -3743 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 351-36 chr5 43211577 43211725 + 2.5 NA intron (NR_072980, intron 1 of 3) L2c|LINE|L2 18799 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 288.5-39 chr6 142803644 142803844 + 2.5 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) 141432 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 341-21 chr2 183372707 183372897 + 2.5 NA Intergenic MamRep1527|LTR|LTR 248359 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 425-25 chr18 68895066 68895346 + 2.5 NA intron (NM_001093729, intron 7 of 9) intron (NM_001093729, intron 7 of 9) 97126 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 419-6 chr11 14181231 14181442 + 2.5 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 177149 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 850-3 chr12 125798293 125798753 + 2.5 NA Intergenic AluJb|SINE|Alu 176071 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 411 chr1 63244851 63245163 + 2.5 NA intron (NR_038252, intron 4 of 11) intron (NR_038252, intron 4 of 11) 72250 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 330.5-25 chr3 115468317 115468519 + 2.5 NA Intergenic Intergenic -155092 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 361-7 chr10 94237047 94237484 + 2.5 NA intron (NM_001165979, intron 6 of 31) intron (NM_001165979, intron 6 of 31) 49805 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 253.5-29 chr6 148442334 148442495 + 2.5 NA intron (NM_001346505, intron 4 of 19) AluJb|SINE|Alu -66085 NM_001346508 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 506.5-9 chr20 63275311 63275610 + 2.5 NA intron (NM_001281482, intron 1 of 13) intron (NM_001281482, intron 1 of 13) 2647 NM_175609 55738 Hs.25584 NM_018209 ENSG00000101199 ARFGAP1 ARF1GAP|HRIHFB2281 ADP ribosylation factor GTPase activating protein 1 protein-coding 296.5-29 chr5 19909429 19909661 + 2.5 NA intron (NM_001349562, intron 2 of 13) AluSx|SINE|Alu -23273 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 302-37 chr9 27965717 27965963 + 2.5 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -391974 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 458-18 chr2 127561005 127561214 + 2.5 NA non-coding (NR_132317, exon 3 of 3) non-coding (NR_132317, exon 3 of 3) 9853 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 677-4 chr16 70321136 70321483 + 2.5 NA intron (NM_007242, intron 5 of 11) AluJo|SINE|Alu 22256 NM_001014449 11269 Hs.221761 NM_007242 ENSG00000157349 DDX19B DBP5|DDX19|RNAh DEAD-box helicase 19B protein-coding 813.5-3 chr14 54153574 54153996 + 2.5 NA Intergenic L1MC5|LINE|L1 -196894 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 725-3 chr11 115454151 115454729 + 2.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 49975 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 573-10 chr2 224623881 224624186 + 2.5 NA Intergenic Intergenic -38636 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 330-36 chr5 63431464 63431647 + 2.5 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 530737 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 549-19 chr7 91512746 91512977 + 2.5 NA Intergenic L1PA3|LINE|L1 248428 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 475-25 chr6 53686740 53687335 + 2.5 NA Intergenic Intergenic -21281 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 427-13 chr15 50780159 50780350 + 2.5 NA Intergenic AluSx3|SINE|Alu -14548 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 218.5-16 chr18 5542296 5542457 + 2.5 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 1621 NM_001281534 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 288.5-41 chr8 89657145 89657334 + 2.5 NA Intergenic L1MA5A|LINE|L1 100472 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 361-27 chr6 49412898 49413159 + 2.5 NA Intergenic L2c|LINE|L2 50225 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 370.5-7 chr14 58355412 58355606 + 2.5 NA intron (NM_002892, intron 17 of 23) MER44A|DNA|TcMar-Tigger -40421 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 653.5-5 chr2 12128770 12129340 + 2.5 NA intron (NR_110197, intron 3 of 3) LTR85c|LTR|Gypsy? -70075 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 453-32 chr8 137711343 137711621 + 2.5 NA Intergenic L1ME1|LINE|L1 -297894 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 341.5-22 chr20 31497533 31497767 + 2.5 NA Intergenic Intergenic 11872 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 806.5-2 chr2 167505528 167505903 + 2.5 NA Intergenic L3|LINE|CR1 -312957 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 638.5-7 chr3 111151469 111151986 + 2.5 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 79911 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 578-12 chr2 5023838 5024137 + 2.5 NA Intergenic L1MA8|LINE|L1 -367765 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 419.5-16 chr5 8212614 8212816 + 2.5 NA Intergenic Intergenic 244849 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 323.5-21 chr3 72594122 72594373 + 2.5 NA Intergenic Intergenic 70002 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 333-26 chr3 114652451 114652616 + 2.5 NA intron (NM_001348803, intron 6 of 13) L1ME2|LINE|L1 -27588 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 430.5-25 chr8 90671855 90672266 + 2.5 NA Intergenic L2b|LINE|L2 -25977 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 412.5-10 chr14 21204369 21204650 + 2.5 NA non-coding (NR_038970, exon 1 of 1) non-coding (NR_038970, exon 1 of 1) 994 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 530.5-15 chr7 51763522 51763901 + 2.5 NA Intergenic Intergenic -370455 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 655.5-7 chr17 54092889 54093197 + 2.5 NA Intergenic Intergenic 270116 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 877-2 chr2 27586594 27587301 + 2.5 NA intron (NM_001271286, intron 2 of 12) L1ME1|LINE|L1 3905 NM_032434 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 355-18 chr2 44293228 44293548 + 2.5 NA intron (NM_000341, intron 4 of 9) AluSx1|SINE|Alu 17908 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 602-11 chr2 26641272 26641625 + 2.5 NA promoter-TSS (NM_001029881) promoter-TSS (NM_001029881) -82 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 436.5-6 chr2 6068401 6068818 + 2.5 NA Intergenic Intergenic 86631 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 264.5-19 chr19 45546016 45546171 + 2.5 NA TTS (NM_025136) TTS (NM_025136) 38614 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator stimulated phosphoprotein protein-coding 541.5-4 chr11 72891952 72892250 + 2.5 NA intron (NM_014824, intron 10 of 19) intron (NM_014824, intron 10 of 19) 77690 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 421-11 chr14 45340522 45340877 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -87497 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 505-16 chr20 54552658 54552991 + 2.5 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 77231 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 452.5-2 chr10 29238632 29238929 + 2.5 NA Intergenic Intergenic -50290 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 309-9 chr12 1132282 1132494 + 2.5 NA intron (NR_027948, intron 6 of 19) intron (NR_027948, intron 6 of 19) 104640 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 328.5-27 chr2 208359307 208359558 + 2.5 NA promoter-TSS (NM_001309516) promoter-TSS (NM_001309516) -260 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 409.5-17 chr3 114840977 114841216 + 2.5 NA intron (NM_001348805, intron 4 of 10) L2b|LINE|L2 -31937 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 135-6 chr6 47347542 47347640 + 2.5 NA Intergenic Intergenic -37686 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 494.5-19 chr8 129940373 129940730 + 2.5 NA promoter-TSS (NM_001353299) promoter-TSS (NM_001353299) -740 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 666.5-4 chr2 176329334 176329935 + 2.5 NA intron (NM_001319098, intron 8 of 8) HAL1b|LINE|L1 60192 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 415.5-9 chr18 60180992 60181251 + 2.5 NA Intergenic L1ME1|LINE|L1 191654 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 238-38 chr8 119055544 119055655 + 2.5 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -11648 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 499.5-3 chr11 63288425 63288691 + 2.5 NA Intergenic L1MA9|LINE|L1 -1345 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 387.5-24 chr6 140355454 140355620 + 2.5 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 150285 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 361.5-24 chr5 11793471 11793642 + 2.5 NA intron (NM_001288717, intron 1 of 20) MLT1C|LTR|ERVL-MaLR 110890 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 498.5-6 chr15 62659820 62660106 + 2.5 NA intron (NM_015059, intron 6 of 55) intron (NM_015059, intron 6 of 55) 12652 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 433.5-24 chr4 150794060 150794365 + 2.5 NA intron (NM_001367550, intron 34 of 56) L2c|LINE|L2 212061 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 445-31 chr7 85947971 85948246 + 2.5 NA Intergenic L1MA3|LINE|L1 526986 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 629.5-8 chr5 51089797 51090351 + 2.5 NA Intergenic Intergenic -119887 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 721.5-5 chr2 143649991 143650454 + 2.5 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -286845 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 421.5-23 chr6 140653143 140653665 + 2.5 NA Intergenic Intergenic -30410 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 456.5-18 chr5 31823827 31824009 + 2.5 NA intron (NM_178140, intron 2 of 24) MER34|LTR|ERV1 112241 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 412-12 chr17 34365676 34365851 + 2.5 NA Intergenic L1P4|LINE|L1 -2530 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 396-17 chr2 168510690 168510857 + 2.5 NA intron (NM_001256126, intron 1 of 10) MIR|SINE|MIR 54501 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 301-15 chr12 78245012 78245228 + 2.5 NA Intergenic Intergenic 114626 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 437-10 chr11 116284067 116284259 + 2.5 NA Intergenic Intergenic -355259 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 487.5-3 chr1 79927337 79927764 + 2.5 NA Intergenic Intergenic -608205 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 194-15 chr3 37329009 37329111 + 2.5 NA exon (NM_002078, exon 16 of 24) exon (NM_002078, exon 16 of 24) -57209 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 538.5-16 chr5 16850165 16850597 + 2.5 NA intron (NM_012334, intron 2 of 40) AluSx4|SINE|Alu 85907 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 988 chr14 63673531 63673978 + 2.5 NA Intergenic L2|LINE|L2 -31883 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 380-11 chr3 128074258 128074481 + 2.5 NA intron (NM_001319086, intron 9 of 9) L1ME2z|LINE|L1 -1441 NR_046645 100874089 Hs.581603 NR_046645 ENSG00000239608 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 270-32 chr8 29690917 29691059 + 2.5 NA Intergenic L1MEd|LINE|L1 57121 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 578.5-14 chr8 48702413 48702778 + 2.5 NA Intergenic Intergenic 32673 NM_001363974 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 578-8 chr14 37419459 37419731 + 2.5 NA intron (NM_138731, intron 11 of 13) intron (NM_138731, intron 11 of 13) 175654 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 865.5-5 chr7 61040394 61040840 + 2.5 NA Intergenic Intergenic 2263439 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 436.5-16 chr7 17033231 17033647 + 2.5 NA Intergenic Intergenic -151456 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 489-29 chr6 48033072 48033374 + 2.5 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 35466 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 466.5-2 chr10 33255654 33256046 + 2.5 NA intron (NM_001244973, intron 5 of 16) intron (NM_001244973, intron 5 of 16) 78817 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 587.5-21 chr9 101836931 101837231 + 2.5 NA Intergenic L1PA8|LINE|L1 -98501 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 309-37 chr5 101866404 101866633 + 2.5 NA Intergenic Intergenic 429766 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 626-4 chr14 68311052 68311475 + 2.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 317524 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 454-24 chr6 10184655 10184853 + 2.5 NA Intergenic Intergenic -219748 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 266-26 chr2 221284193 221284363 + 2.5 NA Intergenic Intergenic 288026 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 557.5-8 chr2 101883380 101883713 + 2.5 NA intron (NM_145686, intron 26 of 30) intron (NM_145686, intron 26 of 30) -99919 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 393.5-13 chr2 163869617 163869913 + 2.5 NA Intergenic Intergenic -133757 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 504-2 chr1 201633152 201633374 + 2.5 NA Intergenic MIRb|SINE|MIR -15059 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 356-2 chr1 202602228 202602412 + 2.5 NA intron (NM_001136504, intron 5 of 8) intron (NM_001136504, intron 5 of 8) 41133 NM_001136504 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 404-35 chrX 49863272 49863609 + 2.5 NA Intergenic L2|LINE|L2 15916 NR_026742 158572 Hs.408191 NM_001025449 ENSG00000234390 USP27X-AS1 - USP27X antisense RNA 1 (head to head) ncRNA 490.5-3 chr10 29825653 29826008 + 2.5 NA Intergenic Intergenic -88894 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 735.5-4 chr5 118322328 118323032 + 2.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 40106 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 531.5-14 chr7 158943461 158943735 + 2.5 NA intron (NM_001350918, intron 26 of 26) intron (NM_001350918, intron 26 of 26) -64756 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 340-6 chr10 60476299 60476494 + 2.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -86521 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 308-27 chr5 95422768 95422891 + 2.5 NA intron (NM_152548, intron 5 of 9) intron (NM_152548, intron 5 of 9) 31463 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 529-23 chr9 103273888 103274174 + 2.5 NA intron (NR_121578, intron 5 of 9) L1PA16|LINE|L1 51002 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 370.5-19 chr3 177414162 177414395 + 2.5 NA Intergenic Intergenic -27643 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 503.5-14 chr5 88238156 88238444 + 2.5 NA intron (NM_001349403, intron 1 of 10) intron (NM_001349403, intron 1 of 10) 30545 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 565-3 chr14 39903055 39903329 + 2.5 NA Intergenic LTR37-int|LTR|ERV1 -470692 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 340-22 chr2 58564317 58564679 + 2.5 NA intron (NR_033873, intron 1 of 13) MSTD|LTR|ERVL-MaLR 43745 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 536.5-5 chr10 106405047 106405326 + 2.5 NA Intergenic Intergenic 265021 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 286.5-18 chr2 40478381 40478534 + 2.5 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -26367 NM_001351491 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 633.5 chr1 28760801 28761225 + 2.5 NA intron (NM_001173128, intron 5 of 5) Tigger3b|DNA|TcMar-Tigger 24073 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 247.5-22 chr5 71743034 71743234 + 2.5 NA Intergenic L1ME3F|LINE|L1 23859 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 327-4 chr1 215686872 215687027 + 2.5 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 119645 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 463-27 chr8 25147900 25148091 + 2.5 NA Intergenic LTR85a|LTR|Gypsy? -36694 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 430.5-20 chr5 24582100 24582380 + 2.5 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 62738 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 746 chr1 91104299 91104793 + 2.5 NA Intergenic Intergenic -82291 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 673.5-8 chr7 83719238 83719928 + 2.5 NA Intergenic MIR|SINE|MIR -70444 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 537-21 chr7 78664539 78664895 + 2.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) 317475 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 613-6 chr2 61541632 61541985 + 2.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -3452 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 501-13 chr4 48005579 48005884 + 2.5 NA intron (NM_000087, intron 2 of 10) MER4-int|LTR|ERV1 7214 NM_000087 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 529-12 chr2 176010117 176010570 + 2.5 NA Intergenic Intergenic -7523 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 368-43 chr8 28542784 28543063 + 2.5 NA intron (NM_017412, intron 5 of 7) MIR3|SINE|MIR -37741 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 443-2 chr1 64585033 64585370 + 2.5 NA intron (NM_020925, intron 3 of 26) (CATA)n|Simple_repeat|Simple_repeat 5354 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 702-6 chr6 41836989 41837487 + 2.5 NA intron (NM_001286554, intron 1 of 5) L1PREC2|LINE|L1 34399 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 313-2 chr1 166031741 166031974 + 2.5 NA Intergenic Intergenic 122941 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 446.5-19 chr5 131611019 131611292 + 2.5 NA intron (NM_016340, intron 1 of 27) LTR16B2|LTR|ERVL 24074 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 513.5-5 chr12 1781605 1781897 + 2.5 NA intron (NM_024551, intron 6 of 7).2 intron (NM_024551, intron 6 of 7).2 -38516 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 430.5-27 chr9 130169306 130169478 + 2.5 NA Intergenic AluSg|SINE|Alu -3012 NM_014286 23413 Hs.642946 NM_014286 ENSG00000107130 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 357-30 chr4 12778055 12778197 + 2.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 554675 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 470-3 chr11 10814810 10815033 + 2.5 NA intron (NR_120540, intron 2 of 2) intron (NR_120540, intron 2 of 2) 5624 NR_120540 101928053 Hs.637773 NR_120540 ENSG00000246308 LOC101928053 - uncharacterized LOC101928053 ncRNA 699.5-2 chr1 152322046 152322494 + 2.5 NA intron (NM_002016, intron 1 of 2) L1MEg|LINE|L1 2933 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 448-10 chr14 75421794 75422025 + 2.5 NA Intergenic AluJr|SINE|Alu -5815 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 236.5-7 chr10 56943451 56943602 + 2.5 NA Intergenic Intergenic 361033 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 279-8 chr14 42828863 42829048 + 2.5 NA Intergenic L1MB7|LINE|L1 1222099 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 202.5-16 chr2 133744816 133744980 + 2.5 NA Intergenic Intergenic -176435 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 560-9 chr2 106934508 106934781 + 2.5 NA Intergenic L2a|LINE|L2 -47535 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 770.5-3 chr15 85316919 85317293 + 2.5 NA Intergenic Intergenic -63490 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 558.5 chr1 66291842 66292157 + 2.5 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -40109 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 460.5 chr1 71613123 71613374 + 2.5 NA intron (NM_173808, intron 4 of 6) L2a|LINE|L2 223764 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 597-16 chr22 25864727 25865001 + 2.5 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 122676 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 839.5-3 chr2 223487533 223487949 + 2.5 NA Intergenic Intergenic 114620 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 439-3 chr15 27035942 27036217 + 2.5 NA intron (NM_001270873, intron 3 of 5) L2a|LINE|L2 64898 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 520-10 chr14 72099314 72099655 + 2.5 NA intron (NM_001370288, intron 2 of 16) MIR|SINE|MIR 165957 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 617-7 chr5 12234810 12235119 + 2.5 NA Intergenic L1MC4a|LINE|L1 -330518 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 526.5-18 chr7 37749763 37750029 + 2.5 NA Intergenic L2a|LINE|L2 66130 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 269.5-38 chr4 38582269 38582399 + 2.5 NA Intergenic Intergenic 18331 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 517 chr1 34927454 34927727 + 2.5 NA intron (NM_001080418, intron 1 of 11) intron (NM_001080418, intron 1 of 11) 2060 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 374.5-16 chr2 41913262 41913507 + 2.5 NA Intergenic L4_A_Mam|LINE|RTE-X 20339 NR_110262 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 524-12 chr20 52427548 52427826 + 2.5 NA Intergenic MER5A|DNA|hAT-Charlie -193151 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 308.5-15 chr17 68393766 68393980 + 2.5 NA intron (NM_001352899, intron 9 of 12) AluSz|SINE|Alu -19750 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 445.5-12 chr2 206991613 206991933 + 2.5 NA Intergenic Intergenic 52255 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 365.5-10 chr2 122884336 122884694 + 2.5 NA Intergenic Intergenic 188966 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 236.5-8 chr11 67544799 67544965 + 2.5 NA Intergenic Intergenic -21436 NM_001318496 51475 Hs.278984 NM_016366 ENSG00000167791 CABP2 DFNB93 calcium binding protein 2 protein-coding 271.5-33 chr5 154296370 154296549 + 2.5 NA intron (NM_198321, intron 2 of 11) intron (NM_198321, intron 2 of 11) -50647 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 341-35 chr8 58619423 58619677 + 2.5 NA intron (NM_001144772, intron 9 of 30) L1M5|LINE|L1 39857 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 410-14 chr2 165179969 165180256 + 2.5 NA intron (NM_006922, intron 2 of 27) intron (NM_006922, intron 2 of 27) 23938 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 441.5-16 chr6 104836753 104837055 + 2.5 NA intron (NR_146787, intron 4 of 21) L1MD|LINE|L1 22642 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 611.5-5 chr20 46044160 46044404 + 2.5 NA intron (NM_020708, intron 11 of 25) L2a|LINE|L2 15067 NM_020708 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 343.5-18 chr2 172617341 172617562 + 2.5 NA intron (NR_103731, intron 11 of 13) MLT1A1|LTR|ERVL-MaLR 61361 NR_103729 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 614.5-4 chr18 1680831 1681384 + 2.5 NA Intergenic Intergenic -321478 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 482-3 chr11 55219265 55219677 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -42684 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 390.5-5 chr12 63918475 63918647 + 2.5 NA intron (NM_001346201, intron 1 of 21) AluJb|SINE|Alu 73861 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 490-7 chr13 110414022 110414406 + 2.5 NA intron (NM_001846, intron 4 of 47) U13_|snRNA|snRNA 49073 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense 2 protein-coding 378.5-31 chr8 107557676 107558024 + 2.5 NA Intergenic MIR3|SINE|MIR -59932 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 587.5-7 chr11 84449706 84450000 + 2.5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -132514 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 405.5-21 chr6 85448614 85448825 + 2.5 NA promoter-TSS (NM_001204813) promoter-TSS (NM_001204813) -865 NM_001204813 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 593-10 chr20 59451728 59452161 + 2.5 NA Intergenic Intergenic -125565 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 370-16 chr2 40147294 40147523 + 2.5 NA intron (NM_001351483, intron 7 of 8) intron (NM_001351483, intron 7 of 8) 229774 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 354.5-27 chr4 71165955 71166232 + 2.5 NA Intergenic Intergenic -21166 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 253-10 chr17 61253597 61253831 + 2.5 NA intron (NM_001330413, intron 23 of 25) MamGypsy2-I|LTR|Gypsy 113990 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 238.5-4 chr1 218278303 218278446 + 2.5 NA Intergenic L1ME1|LINE|L1 -6919 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 386.5-22 chr5 131158741 131158911 + 2.5 NA TTS (NR_134495) TTS (NR_134495) 6430 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 368-37 chr5 176683154 176683489 + 2.5 NA Intergenic Intergenic 35837 NM_130465 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 447.5-23 chr8 40240669 40240869 + 2.5 NA Intergenic L1M1|LINE|L1 87287 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 421.5-8 chr12 38368711 38369224 + 2.5 NA Intergenic Intergenic 52193 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 343.5-21 chr20 39042383 39042557 + 2.5 NA Intergenic Intergenic 80126 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 650.5 chr1 220691257 220691680 + 2.5 NA intron (NM_024709, intron 1 of 1) intron (NM_024709, intron 1 of 1) 1105 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 325-24 chr5 144691711 144692080 + 2.5 NA Intergenic L1MEf|LINE|L1 486504 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 609.5-3 chr22 27405136 27405543 + 2.5 NA Intergenic L2a|LINE|L2 94688 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 335-19 chr17 73890794 73891001 + 2.5 NA Intergenic Intergenic -62360 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 426-12 chr14 85685560 85685893 + 2.5 NA Intergenic L1MEc|LINE|L1 152377 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 578.5-9 chr3 108644268 108644543 + 2.5 NA exon (NM_014648, exon 14 of 33) exon (NM_014648, exon 14 of 33) 54683 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 440.5 chr1 47040005 47040259 + 2.5 NA intron (NM_178033, intron 8 of 11) L2c|LINE|L2 16463 NM_178033 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 538-4 chr14 88062046 88062374 + 2.5 NA intron (NR_046094, intron 2 of 3) L1MDa|LINE|L1 -35898 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 189.5-30 chr9 5524072 5524147 + 2.5 NA intron (NM_025239, intron 2 of 6) MIRb|SINE|MIR 13578 NM_025239 80380 Hs.532279 NM_025239 ENSG00000197646 PDCD1LG2 B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2 programmed cell death 1 ligand 2 protein-coding 261-8 chr19 46483018 46483122 + 2.5 NA intron (NM_001205281, intron 3 of 3) MIR|SINE|MIR -11507 NM_001103149 55228 Hs.8395 NM_018215 ENSG00000182013 PNMA8A PNMAL1 PNMA family member 8A protein-coding 284-19 chr2 146434164 146434463 + 2.5 NA Intergenic Intergenic -152744 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 409-35 chr8 126270539 126270766 + 2.5 NA Intergenic Intergenic -54843 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 226.5-17 chr3 97742491 97742653 + 2.5 NA intron (NM_001080448, intron 16 of 17) intron (NM_001080448, intron 16 of 17) -21949 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 564-6 chr12 101383376 101383806 + 2.5 NA exon (NM_014503, exon 60 of 62) exon (NM_014503, exon 60 of 62) 24181 NM_001177 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 725-2 chr11 20204769 20205395 + 2.5 NA Intergenic MER41-int|LTR|ERV1 -44607 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 550-12 chr2 37856904 37857452 + 2.5 NA intron (NR_110012, intron 2 of 3) AluSx|SINE|Alu 18685 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 260.5-26 chr5 15097128 15097300 + 2.5 NA Intergenic Intergenic 169346 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 693-15 chr7 50596806 50597181 + 2.5 NA intron (NM_001350816, intron 16 of 17) intron (NM_001350816, intron 16 of 17) -31588 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 305-36 chr4 35809396 35809553 + 2.5 NA Intergenic HAL1|LINE|L1 434465 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 847-2 chr7 106318895 106319266 + 2.5 NA Intergenic Intergenic -34097 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 809-4 chr8 82773825 82774336 + 2.5 NA Intergenic L2a|LINE|L2 -138024 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 367.5 chr1 7843427 7843647 + 2.5 NA 3' UTR (NM_001289863, exon 23 of 23) 3' UTR (NM_001289863, exon 23 of 23) 9528 NM_006786 10911 Hs.715862 NM_006786 ENSG00000049247 UTS2 PRO1068|U-II|UCN2|UII urotensin 2 protein-coding 589-14 chr6 55006898 55007324 + 2.5 NA Intergenic AluSq2|SINE|Alu -99349 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 586.5-11 chr4 64851264 64851641 + 2.5 NA Intergenic Intergenic 153048 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 414-9 chr12 122171636 122171869 + 2.5 NA TTS (NM_001014336) TTS (NM_001014336) 2469 NM_001014336 386653 Hs.569071 NM_001014336 ENSG00000204671 IL31 IL-31 interleukin 31 protein-coding 521-12 chr4 101049305 101049606 + 2.5 NA intron (NM_001130691, intron 10 of 12) intron (NM_001130691, intron 10 of 12) 191417 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 345-30 chr5 13936552 13936737 + 2.5 NA intron (NM_001369, intron 1 of 78) intron (NM_001369, intron 1 of 78) 7836 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 563-7 chr18 12745381 12745763 + 2.5 NA intron (NR_110763, intron 1 of 1) intron (NR_110763, intron 1 of 1) 3850 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 385.5-27 chr2 145721386 145721667 + 2.5 NA Intergenic Intergenic -865531 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 197-22 chr4 161182197 161182351 + 2.5 NA Intergenic Intergenic -840459 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 838.5-4 chr4 41923959 41924414 + 2.5 NA Intergenic Intergenic -11243 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 455-12 chr16 47046086 47046375 + 2.5 NA Intergenic LTR85b|LTR|Gypsy? -72556 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 301.5-4 chr14 76430728 76430920 + 2.5 NA intron (NM_004452, intron 3 of 10) intron (NM_004452, intron 3 of 10) 59477 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 918-4 chr18 13547802 13548246 + 2.5 NA intron (NM_181482, intron 4 of 5) MER52A|LTR|ERV1 -63090 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 246-10 chr2 145610641 145610787 + 2.5 NA Intergenic Intergenic 942747 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 238.5-13 chr13 86545190 86545303 + 2.5 NA Intergenic MER34B-int|LTR|ERV1 -366674 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 217.5-30 chr6 89394005 89394139 + 2.5 NA intron (NM_021244, intron 1 of 6) HAL1ME|LINE|L1 18201 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 513.5-20 chr9 134908363 134908797 + 2.5 NA 3' UTR (NM_002003, exon 9 of 9) 3' UTR (NM_002003, exon 9 of 9) 9332 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 671-7 chr18 77660300 77660897 + 2.5 NA Intergenic Cheshire|DNA|hAT-Charlie 333129 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 418.5-16 chr20 6208090 6208479 + 2.5 NA Intergenic Intergenic -84740 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 439 chr10 64301004 64301225 + 2.5 NA Intergenic Intergenic -524414 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 393.5-14 chr22 41695097 41695395 + 2.5 NA non-coding (NR_160905, exon 4 of 4) non-coding (NR_160905, exon 4 of 4) -4257 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 312.5-14 chr18 69355471 69355613 + 2.5 NA Intergenic Intergenic -45346 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 487-6 chr10 84764504 84764726 + 2.5 NA Intergenic Intergenic 339446 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 864-8 chr8 123669757 123670131 + 2.5 NA Intergenic Intergenic -16143 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 483.5-16 chr6 68512136 68512447 + 2.5 NA Intergenic Intergenic 122033 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 491-7 chr11 81756184 81756455 + 2.5 NA Intergenic Intergenic 134517 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 507.5-7 chr11 41669429 41669783 + 2.5 NA Intergenic L1M1|LINE|L1 -44962 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 402.5-29 chr8 68248550 68248817 + 2.5 NA Intergenic Intergenic -81690 NM_001349477 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 284.5-37 chr6 55315945 55316142 + 2.5 NA Intergenic L1MA7|LINE|L1 -11426 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 626.5-2 chr17 59789133 59789573 + 2.5 NA intron (NM_001329400, intron 5 of 9) AluSx4|SINE|Alu -51913 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 438-3 chr1 192709487 192709726 + 2.5 NA Intergenic Intergenic -6722 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 410-12 chr2 100795664 100796031 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24292 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 268-4 chr12 303761 303878 + 2.5 NA intron (NM_001042603, intron 24 of 27) intron (NM_001042603, intron 24 of 27) -40946 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 395.5-29 chr6 123351036 123351232 + 2.5 NA 3' UTR (NM_001251987, exon 21 of 21) 3' UTR (NM_001251987, exon 21 of 21) -88470 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 331-11 chr11 68495900 68496101 + 2.5 NA intron (NM_001352362, intron 2 of 24) AluJb|SINE|Alu 35248 NM_001164161 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 589.5-5 chr19 27679255 27679620 + 2.5 NA Intergenic AluSc|SINE|Alu -113994 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 461.5-4 chr11 82415772 82416060 + 2.5 NA Intergenic L1MA6|LINE|L1 -12003 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 259.5-35 chr5 62511418 62511543 + 2.5 NA intron (NM_016338, intron 19 of 29) intron (NM_016338, intron 19 of 29) -67255 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 262.5-21 chr5 150498184 150498365 + 2.5 NA intron (NM_001301063, intron 1 of 13) MIR|SINE|MIR 495 NM_001301063 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 361.5-31 chr8 131644377 131644545 + 2.5 NA Intergenic Intergenic -259632 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 342-35 chr7 30941065 30941260 + 2.5 NA Intergenic AluJr|SINE|Alu -22791 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 418-14 chr20 36670886 36671338 + 2.5 NA intron (NM_032013, intron 9 of 15) intron (NM_032013, intron 9 of 15) -24916 NM_175077 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 549-2 chr1 184999597 185000069 + 2.5 NA Intergenic L1PA13|LINE|L1 -1694 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 304.5-8 chr10 83205111 83205330 + 2.5 NA Intergenic L2|LINE|L2 471869 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 503.5-9 chr20 35747880 35748134 + 2.5 NA Intergenic AluSx1|SINE|Alu -5671 NR_136587 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 376.5-30 chr8 124921789 124922039 + 2.5 NA Intergenic Intergenic -20094 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 665.5-3 chr14 61901109 61901466 + 2.5 NA intron (NM_001367661, intron 2 of 8) (GCT)n|Simple_repeat|Simple_repeat -26408 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 456.5-4 chr10 22351408 22351868 + 2.5 NA intron (NM_001253854, intron 3 of 13) intron (NM_001253854, intron 3 of 13) 6142 NM_012443 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 277-47 chr8 110475968 110476157 + 2.5 NA Intergenic Intergenic -500291 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 364-36 chr6 69309854 69310027 + 2.5 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 486526 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 865-2 chr15 86272337 86272861 + 2.5 NA intron (NM_152336, intron 15 of 24) intron (NM_152336, intron 15 of 24) 44369 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 421.5-21 chr5 34797462 34797864 + 2.5 NA intron (NM_015577, intron 4 of 17) MARNA|DNA|TcMar-Mariner -41501 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 378-2 chr1 47965842 47966044 + 2.5 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 31442 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 355.5-21 chr8 26793380 26793558 + 2.5 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 72186 NM_001322502 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 499.5-14 chr3 53582893 53583239 + 2.5 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 88455 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 269.5-40 chr4 77742743 77742926 + 2.5 NA intron (NM_001365006, intron 7 of 11) intron (NM_001365006, intron 7 of 11) 76230 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 651-13 chr9 3796603 3796888 + 2.5 NA Intergenic Intergenic -101901 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 505-9 chr14 98250216 98250565 + 2.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -272266 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 722.5 chr1 48917853 48918198 + 2.5 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -141056 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 431.5-7 chr14 62270803 62271058 + 2.5 NA Intergenic Intergenic -130957 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 293.5-34 chr8 87022666 87022811 + 2.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 156323 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 408.5 chr1 24654053 24654293 + 2.5 NA intron (NM_001366594, intron 8 of 17) intron (NM_001366594, intron 8 of 17) 10594 NM_001366598 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 431-28 chr8 25008221 25008501 + 2.5 NA Intergenic Intergenic -51492 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 858 chr13 37625956 37626318 + 2.5 NA Intergenic Intergenic -27293 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 447.5-4 chr13 41111060 41111258 + 2.5 NA Intergenic AluJb|SINE|Alu -10059 NR_036127 100422878 NR_036127 ENSG00000264226 MIR3168 - microRNA 3168 ncRNA 426-40 chr7 13258753 13259188 + 2.5 NA Intergenic Intergenic 571337 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 695-12 chr9 116820627 116821202 + 2.5 NA intron (NM_014010, intron 10 of 21) MIRb|SINE|MIR 133609 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 369.5-9 chr18 37012993 37013246 + 2.5 NA intron (NR_136303, intron 6 of 13) MER135|DNA|DNA -89305 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 642-14 chr5 80274284 80274692 + 2.5 NA Intergenic Tigger3d|DNA|TcMar-Tigger -18440 NM_001174071 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 597-8 chr15 40876249 40876659 + 2.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -2220 NM_133639 171177 Hs.447901 NM_133639 ENSG00000104140 RHOV ARHV|CHP|WRCH2 ras homolog family member V protein-coding 263.5-31 chr9 124870370 124870508 + 2.5 NA intron (NM_030978, intron 3 of 5) intron (NM_030978, intron 3 of 5) 8309 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 388.5-15 chr4 53759956 53760111 + 2.5 NA Intergenic L1MA7|LINE|L1 64132 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 563-13 chr5 135521806 135522278 + 2.5 NA Intergenic L1MCc|LINE|L1 13922 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 681.5-3 chr2 123309628 123310017 + 2.5 NA Intergenic L1PA8|LINE|L1 -236341 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 377-19 chr20 56547523 56547755 + 2.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger 14393 NM_001013646 388799 Hs.287759 NM_001013646 ENSG00000213714 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209 member B protein-coding 505.5-8 chr11 118526341 118526676 + 2.5 NA promoter-TSS (NM_001346096) promoter-TSS (NM_001346096) -925 NM_001346096 143941 Hs.653449 NM_001080441 ENSG00000172425 TTC36 HBP21 tetratricopeptide repeat domain 36 protein-coding 873-4 chr5 172924782 172925321 + 2.5 NA intron (NM_001031711, intron 6 of 9) AluSx1|SINE|Alu 9968 NR_162113 113218510 NR_162113 MIR10523 - microRNA 10523 ncRNA 504.5 chr10 59251284 59251542 + 2.5 NA 3' UTR (NM_001347851, exon 14 of 14) 3' UTR (NM_001347851, exon 14 of 14) 73946 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 324-22 chr2 179659986 179660222 + 2.5 NA promoter-TSS (NM_001352812) promoter-TSS (NM_001352812) 90 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 326-6 chr1 231111475 231111632 + 2.5 NA Intergenic L1MD1|LINE|L1 -51375 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 563.5-2 chr11 25521766 25522039 + 2.5 NA Intergenic Intergenic -667221 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 289-38 chr6 34919725 34919902 + 2.5 NA intron (NM_015245, intron 1 of 23) MIR|SINE|MIR 30558 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 462-35 chr5 155865076 155865261 + 2.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -461589 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 367-31 chr6 97222816 97222989 + 2.5 NA intron (NM_001350600, intron 13 of 23) intron (NM_001350600, intron 13 of 23) 60314 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 298-35 chr9 103341544 103341726 + 2.5 NA Intergenic Intergenic -16602 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 387-36 chr8 78888523 78888719 + 2.5 NA Intergenic L2a|LINE|L2 51092 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 730 chr1 49133308 49133926 + 2.5 NA intron (NM_001323575, intron 4 of 12) L1ME4a|LINE|L1 -123794 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 478-32 chr9 96775323 96775840 + 2.5 NA intron (NM_001314059, intron 2 of 5) intron (NM_001314059, intron 2 of 5) 2506 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 552 chr1 40526281 40526595 + 2.5 NA Intergenic L1MA5A|LINE|L1 -5199 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 659.5-5 chr3 110279860 110280164 + 2.5 NA Intergenic L1M5|LINE|L1 677184 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 310.5 chr1 108509634 108509867 + 2.5 NA Intergenic Intergenic -50350 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 274.5-3 chr1 183842187 183842401 + 2.5 NA intron (NM_001297671, intron 2 of 17) intron (NM_001297671, intron 2 of 17) 37174 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 539.5 chr1 109929687 109930073 + 2.5 NA 3' UTR (NM_172211, exon 9 of 9) 3' UTR (NM_172211, exon 9 of 9) 19031 NM_000757 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 491.5-13 chr22 40602850 40603074 + 2.5 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 33757 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 358.5-27 chr7 44659431 44659625 + 2.5 NA intron (NM_001363523, intron 5 of 23) L1MD1|LINE|L1 52901 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 456-27 chr5 128782156 128782510 + 2.5 NA Intergenic Intergenic -182794 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 319.5-4 chr10 21643718 21643986 + 2.5 NA intron (NM_001195626, intron 8 of 22) HAL1b|LINE|L1 109680 NM_001195627 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 643.5-9 chr22 42464738 42465142 + 2.5 NA Intergenic L1MEd|LINE|L1 -26954 NM_001371362 504-13 chr19 57575854 57576149 + 2.5 NA intron (NM_017879, intron 2 of 3) intron (NM_017879, intron 2 of 3) 2910 NM_017879 55659 Hs.247711 NM_017879 ENSG00000083817 ZNF416 - zinc finger protein 416 protein-coding 390.5-28 chr7 33761695 33762013 + 2.5 NA Intergenic Intergenic -143061 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 511.5 chr1 10171979 10172290 + 2.5 NA intron (NM_006048, intron 24 of 26) intron (NM_006048, intron 24 of 26) -38436 NM_183416 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 503-6 chr14 71901426 71901825 + 2.5 NA Intergenic Intergenic -30546 NM_001370289 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 765-8 chr8 51031718 51032101 + 2.5 NA Intergenic L1MEc|LINE|L1 777536 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 410-26 chr5 84457654 84457904 + 2.5 NA Intergenic L1MA7|LINE|L1 -72899 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 309.5-9 chr12 30224616 30224846 + 2.5 NA Intergenic Intergenic -439972 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 476.5-6 chr14 72385820 72386162 + 2.5 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -130829 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 380.5-12 chr2 26363675 26363975 + 2.5 NA intron (NR_137633, intron 1 of 9) AluSz|SINE|Alu -17036 NM_153835 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 547-7 chr17_KI270729v1_random 5501 5968 + 2.5 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 538-3 chr14 42976569 42977166 + 2.5 NA Intergenic L1PB4|LINE|L1 1370011 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 267.5-8 chr16 76911612 76911745 + 2.5 NA Intergenic Intergenic 42742 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 615.5-6 chr20 53345899 53346449 + 2.5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 160891 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 539.5-15 chr22 20945354 20945609 + 2.5 NA intron (NR_156180, intron 2 of 3) intron (NR_156180, intron 2 of 3) -11611 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 388-15 chr14_GL000225v1_random 21648 21839 + 2.5 NA NA BSR/Beta|Satellite|Satellite NA NA 497-16 chr8 112328648 112328928 + 2.5 NA intron (NM_001363185, intron 41 of 66) THE1D|LTR|ERVL-MaLR -314705 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 515.5-5 chr18 49236667 49237011 + 2.5 NA intron (NM_001353214, intron 13 of 17) intron (NM_001353214, intron 13 of 17) -187071 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 487-27 chr3 159692907 159693217 + 2.5 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 75550 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 281.5-13 chr18 7668700 7668892 + 2.5 NA intron (NM_002845, intron 1 of 30) L2a|LINE|L2 101480 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 578.5-11 chr5 180896698 180897099 + 2.5 NA Intergenic Intergenic -2179 NM_024850 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 254-36 chr5 166808467 166808658 + 2.5 NA Intergenic Intergenic 117808 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 301-34 chr7 40345881 40346129 + 2.5 NA intron (NM_024728, intron 9 of 14) L1PB2|LINE|L1 211029 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 501.5-19 chr3 130666105 130666364 + 2.5 NA intron (NM_001102608, intron 35 of 35) L1MC4|LINE|L1 80595 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 290-26 chr5 37280772 37280994 + 2.5 NA Intergenic Intergenic -31455 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 435-9 chr14 58706553 58706934 + 2.5 NA Intergenic MER20|DNA|hAT-Charlie 67906 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 504-12 chr19 29064969 29065241 + 2.5 NA Intergenic Intergenic 62550 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 445.5-26 chr8 88357846 88358102 + 2.5 NA Intergenic Intergenic -30491 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 505-14 chr2 63728092 63728433 + 2.5 NA Intergenic Intergenic -112702 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 747.5 chr1 192523447 192523990 + 2.5 NA Intergenic Intergenic -52055 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 518-13 chr2 64244400 64244653 + 2.5 NA intron (NR_120420, intron 2 of 4) Zaphod|DNA|hAT-Tip100 16125 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 468-26 chr4 47257653 47257865 + 2.5 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 205943 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 452.5-6 chr17 49096572 49096824 + 2.5 NA Intergenic L1MEi|LINE|L1 -35762 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 402-20 chr2 98219320 98219652 + 2.5 NA intron (NR_144297, intron 14 of 18) L1MEc|LINE|L1 69953 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 353.5-13 chr18 7953379 7953540 + 2.5 NA intron (NM_002845, intron 6 of 30) intron (NM_002845, intron 6 of 30) 386143 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 299-8 chr11 114772559 114772818 + 2.5 NA Intergenic Intergenic 94161 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 341-12 chr15 42587296 42587506 + 2.5 NA intron (NM_020759, intron 3 of 32) intron (NM_020759, intron 3 of 32) 11795 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 214.5-5 chr12 79138551 79138716 + 2.5 NA intron (NM_005639, intron 3 of 10) MIRb|SINE|MIR 92941 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 487.5-28 chr7 40972441 40972880 + 2.5 NA intron (NR_110831, intron 1 of 2) LTR40c|LTR|ERVL 7279 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 338.5-30 chr6 131285911 131286170 + 2.5 NA Intergenic Intergenic 35636 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 663.5 chr1 119697806 119698232 + 2.5 NA Intergenic L1MEc|LINE|L1 -13915 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 412-20 chr22 27711921 27712146 + 2.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 89723 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 625-14 chr5 101788320 101788753 + 2.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 507748 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 675 chr14 40746357 40746715 + 2.5 NA Intergenic MER39|LTR|ERV1 -208175 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 358.5-15 chr2 211416962 211417128 + 2.5 NA intron (NM_005235, intron 25 of 27) MIRb|SINE|MIR 799474 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 510.5-12 chr8 76949500 76949779 + 2.5 NA Intergenic AluJb|SINE|Alu 17211 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 270-25 chr5 92902305 92902557 + 2.5 NA Intergenic Intergenic 668912 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 491-8 chr12 1669095 1669495 + 2.5 NA Intergenic Intergenic -8915 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 593-16 chr6 132748125 132748662 + 2.5 NA intron (NM_004665, intron 6 of 6) intron (NM_004665, intron 6 of 6) 9511 NM_004665 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 338.5-35 chr8 79357856 79358014 + 2.5 NA Intergenic MIR3|SINE|MIR 25747 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 580.5-5 chr20 53969560 53969904 + 2.5 NA intron (NM_001366295, intron 7 of 10) MLT1L|LTR|ERVL-MaLR 89288 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 373-23 chr2 62721562 62721872 + 2.5 NA intron (NM_001142615, intron 2 of 22) L1MD3|LINE|L1 14820 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 377.5-16 chr5 5972529 5972727 + 2.5 NA Intergenic Intergenic 364664 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 243-16 chr18 6007516 6007704 + 2.5 NA intron (NR_158609, intron 15 of 17) L1ME4b|LINE|L1 -111656 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 364.5-26 chr9 75171510 75171757 + 2.5 NA Intergenic MER72|LTR|ERV1 83119 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 392.5-7 chr11 96985961 96986146 + 2.5 NA Intergenic Intergenic 477628 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 572-11 chr20 15206290 15206629 + 2.5 NA intron (NM_001033087, intron 1 of 13) L1ME2|LINE|L1 9619 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 329-27 chr5 8880714 8880950 + 2.5 NA intron (NR_109932, intron 1 of 2) L1MA2|LINE|L1 41100 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 520-20 chr4 101215061 101215419 + 2.5 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 25632 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 546.5-2 chr10 57758560 57758804 + 2.5 NA Intergenic L1PB1|LINE|L1 -454123 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 311-29 chr7 96169380 96169504 + 2.5 NA intron (NM_001160210, intron 13 of 17) intron (NM_001160210, intron 13 of 17) 50314 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 448.5 chr10 71385724 71386018 + 2.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -11049 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 397-30 chr5 165557639 165557839 + 2.5 NA Intergenic L1MEg|LINE|L1 1087460 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 549-7 chr19 39080491 39080940 + 2.5 NA Intergenic L1ME3B|LINE|L1 -3653 NM_001004318 390928 Hs.448934 NM_001004318 ENSG00000183760 ACP7 PAPL|PAPL1 acid phosphatase 7, tartrate resistant (putative) protein-coding 277-50 chr9 630195 630379 + 2.5 NA intron (NM_001256877, intron 2 of 12) AluY|SINE|Alu -56480 NM_001354335 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 482-13 chr20 41582155 41582430 + 2.5 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 36085 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 253-13 chr2 59188445 59188624 + 2.5 NA Intergenic L1MA10|LINE|L1 -29174 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 331-12 chr11 93790272 93790493 + 2.5 NA intron (NM_004268, intron 2 of 11) intron (NM_004268, intron 2 of 11) 6100 NM_004268 9440 Hs.444931 NM_004268 ENSG00000042429 MED17 CRSP6|CRSP77|DRIP80|SRB4|TRAP80 mediator complex subunit 17 protein-coding 741.5-2 chr2 191594568 191594901 + 2.5 NA Intergenic Intergenic -83338 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 602-9 chr14 76194210 76194633 + 2.5 NA intron (NM_001322028, intron 8 of 9) intron (NM_001322028, intron 8 of 9) 40067 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 339.5-14 chr18 2093974 2094173 + 2.5 NA Intergenic Intergenic 477432 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 464-23 chr6 138661103 138661446 + 2.5 NA Intergenic L1MA9|LINE|L1 -30394 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 379-33 chr5 108503509 108503689 + 2.5 NA Intergenic Intergenic -121501 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 283.5-14 chr15 80532048 80532183 + 2.5 NA intron (NM_014862, intron 8 of 18) MIR|SINE|MIR 30829 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 496-7 chr16 31838605 31839039 + 2.5 NA Intergenic L1PB4|LINE|L1 -29969 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 578-19 chr5 1236460 1236697 + 2.5 NA intron (NM_182632, intron 4 of 11) intron (NM_182632, intron 4 of 11) 11197 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 725.5-6 chr15 50148999 50149440 + 2.5 NA Intergenic MER117|DNA|hAT-Charlie -29986 NR_073597 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 479.5-22 chr9 29793274 29793539 + 2.5 NA Intergenic LTR89|LTR|ERVL? -579805 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 381.5-26 chr9 6345683 6346188 + 2.5 NA Intergenic AluJb|SINE|Alu 17560 NM_001001874 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 321.5-12 chr11 117221398 117221584 + 2.5 NA intron (NM_004716, intron 9 of 16) intron (NM_004716, intron 9 of 16) 10582 NM_004716 9159 Hs.648612 NM_004716 ENSG00000160613 PCSK7 LPC|PC7|PC8|SPC7 proprotein convertase subtilisin/kexin type 7 protein-coding 317.5 chr1 8056113 8056346 + 2.5 NA Intergenic Intergenic -29920 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 588.5-8 chr2 138126749 138127064 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 25022 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 404-27 chr22 35107823 35108186 + 2.5 NA Intergenic L1MD1|LINE|L1 41846 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 461-10 chr2 9746204 9746490 + 2.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -97095 NM_001318976 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 319-14 chr17 50249578 50249749 + 2.5 NA Intergenic L1MC4|LINE|L1 -21743 NM_001168215 162461 Hs.224630 NM_153229 ENSG00000167105 TMEM92 - transmembrane protein 92 protein-coding 353.5 chr1 17060762 17060978 + 2.5 NA Intergenic L1ME3G|LINE|L1 -6700 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 250-14 chr15 98750111 98750255 + 2.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -34243 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 335-10 chr12 38652877 38653101 + 2.5 NA 3' UTR (NM_153634, exon 20 of 20) 3' UTR (NM_153634, exon 20 of 20) 252602 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 761.5 chr1 214908275 214908811 + 2.5 NA Intergenic Intergenic -96999 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 436.5-19 chr8 87500678 87501072 + 2.5 NA Intergenic Intergenic 373140 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 262-7 chr10 59782259 59782461 + 2.5 NA Intergenic Intergenic -28905 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 578.5-2 chr10 64355747 64356391 + 2.5 NA Intergenic Intergenic -469459 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 388-14 chr14 68289913 68290126 + 2.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 338768 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 571-8 chr2 46830546 46830845 + 2.5 NA intron (NR_024452, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 2831 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 1000.5 chr9 86770206 86770746 + 2.5 NA Intergenic L1PB2|LINE|L1 177030 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 427-14 chr17 69978757 69978956 + 2.5 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 17149 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 228-6 chr17 65430220 65430366 + 2.5 NA Intergenic Intergenic -27248 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 607-6 chr10 46317159 46317504 + 2.5 NA intron (NM_001278688, intron 16 of 16) intron (NM_001278688, intron 16 of 16) 30334 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 673-6 chr5 119540819 119541319 + 2.5 NA intron (NM_001199291, intron 24 of 24) intron (NM_001199291, intron 24 of 24) -88489 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 409-32 chr8 4789614 4789846 + 2.5 NA intron (NM_033225, intron 1 of 69) OldhAT1|DNA|hAT-Ac 205184 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 276.5-7 chr10 104596620 104596771 + 2.5 NA Intergenic MamTip2|DNA|hAT-Tip100 -44595 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 780-5 chr8 143882071 143882508 + 2.5 NA Intergenic Intergenic -3825 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 480.5-2 chr14 60537495 60537807 + 2.5 NA Intergenic MIR|SINE|MIR 28505 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 450.5-19 chr8 117324934 117325261 + 2.5 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 190102 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 477.5 chr1 24462134 24462580 + 2.5 NA intron (NM_001322857, intron 10 of 11) L1ME3|LINE|L1 -39987 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 520.5-7 chr14 71648310 71648605 + 2.5 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 62159 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 322.5-6 chr11 71432790 71432946 + 2.5 NA Intergenic Intergenic -9514 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 348-33 chr8 82657568 82657728 + 2.5 NA Intergenic (TATACA)n|Simple_repeat|Simple_repeat -254456 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 422.5-12 chr22 45906844 45907141 + 2.5 NA Intergenic MIRc|SINE|MIR 70170 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 257.5-42 chr7 93458766 93458912 + 2.5 NA intron (NM_001164738, intron 7 of 12) MADE2|DNA|TcMar-Mariner 24016 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 507.5-16 chr8 135586123 135586405 + 2.5 NA intron (NM_006558, intron 6 of 8) MIRb|SINE|MIR 128808 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 407.5-21 chr8 134208166 134208334 + 2.5 NA Intergenic Intergenic 321754 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 510-8 chr13 88843821 88844168 + 2.5 NA Intergenic Intergenic 217141 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 555.5-7 chr8 66919435 66919826 + 2.5 NA 3' UTR (NM_173518, exon 15 of 15) 3' UTR (NM_173518, exon 15 of 15) 2919 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 830-3 chr16 19411299 19411916 + 2.5 NA intron (NM_001105249, intron 1 of 20) MIR|SINE|MIR 872 NM_001105249 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 243.5-21 chr21 35126838 35126972 + 2.5 NA Intergenic Intergenic -77607 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 319-11 chr15 64990898 64991043 + 2.5 NA Intergenic Intergenic -1056 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 450.5-7 chr2 9169625 9169967 + 2.5 NA Intergenic MER41B|LTR|ERV1 -36969 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 547-22 chr8 140067483 140067730 + 2.5 NA intron (NM_001160372, intron 17 of 22) MIR3|SINE|MIR 32929 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 399-18 chr18 76390949 76391225 + 2.5 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -100565 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 461-22 chr4 76695316 76695700 + 2.5 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 119957 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 449.5-10 chr3 46378602 46379001 + 2.5 NA intron (NR_125406, intron 2 of 3) intron (NR_125406, intron 2 of 3) 8659 NM_001100168 1234 Hs.450802 NM_000579 ENSG00000160791 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding 405-4 chr11 17152465 17152673 + 2.5 NA intron (NM_001321380, intron 2 of 31) intron (NM_001321380, intron 2 of 31) 55417 NM_001321378 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 437-35 chr7 40330363 40330617 + 2.5 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 195514 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 344-29 chr5 153271221 153271358 + 2.5 NA Intergenic Intergenic -219235 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 251.5-26 chr8 105304849 105305023 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -13502 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 641.5-9 chr8 76398884 76399329 + 2.5 NA Intergenic MER1B|DNA|hAT-Charlie -7548 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 476.5-4 chr12 124857601 124857872 + 2.5 NA intron (NR_160424, intron 1 of 11) L2|LINE|L2 6128 NM_001367988 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 520.5-17 chr7 51922903 51923274 + 2.5 NA Intergenic Intergenic -529832 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 559-3 chr14 61350671 61351057 + 2.5 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 29421 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 795-8 chr8 121318266 121318887 + 2.5 NA Intergenic Intergenic -320770 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 360.5-9 chr18 67030120 67030264 + 2.5 NA Intergenic Intergenic -51392 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 410-18 chr22 31263070 31263245 + 2.5 NA intron (NM_001031801, intron 6 of 14) intron (NM_001031801, intron 6 of 14) 14773 NM_016733 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 150.5 chr1 44963759 44963864 + 2.5 NA intron (NM_001166588, intron 3 of 9) intron (NM_001166588, intron 3 of 9) 22784 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 389-31 chr3 46371850 46372208 + 2.5 NA intron (NR_125406, intron 2 of 3) MIR|SINE|MIR 1887 NM_001100168 1234 Hs.450802 NM_000579 ENSG00000160791 CCR5 CC-CKR-5|CCCKR5|CCR-5|CD195|CKR-5|CKR5|CMKBR5|IDDM22 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding 604.5-3 chr12 83267716 83268030 + 2.5 NA Intergenic L1PA7|LINE|L1 580718 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 575.5-4 chr3 1445503 1445995 + 2.5 NA Intergenic MER5A1|DNA|hAT-Charlie 352725 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 315.5-39 chr9 81607948 81608194 + 2.5 NA intron (NM_005077, intron 14 of 19) intron (NM_005077, intron 14 of 19) 81464 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 559.5-15 chr4 44915418 44915668 + 2.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -188909 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 614.5-7 chr3 100263592 100263903 + 2.5 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 2755 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 304-10 chr15 57925792 57925985 + 2.5 NA Intergenic L2c|LINE|L2 88135 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 505.5-7 chr11 113638043 113638287 + 2.5 NA Intergenic Intergenic 68143 NM_001288752 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 312-6 chr13 67103458 67103778 + 2.5 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 112732 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 406-4 chr11 110305311 110305613 + 2.5 NA Intergenic Intergenic -8750 NM_001260493 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 734.5-3 chr2 76765050 76765477 + 2.5 NA intron (NR_146416, intron 1 of 1) MLT-int|LTR|ERVL-MaLR -220702 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 311 chr1 11788411 11788562 + 2.5 NA 3' UTR (NM_005957, exon 12 of 12) 3' UTR (NM_005957, exon 12 of 12) -8867 NR_126000 102724659 Hs.737635 NR_126000 ENSG00000177553 LOC102724659 - uncharacterized LOC102724659 ncRNA 200.5-4 chr1 242102838 242102992 + 2.5 NA intron (NM_001320272, intron 9 of 10) intron (NM_001320272, intron 9 of 10) -103817 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 249.5-22 chr3 81346300 81346437 + 2.5 NA Intergenic Intergenic 352500 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 347.5-4 chr10 15655471 15655708 + 2.5 NA intron (NM_001291494, intron 9 of 28) L3|LINE|CR1 64333 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 781.5-4 chr2 124893832 124894262 + 2.5 NA intron (NM_130773, intron 21 of 23) intron (NM_130773, intron 21 of 23) 868760 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 485-15 chr7 128401898 128402201 + 2.5 NA intron (NM_183243, intron 3 of 14) intron (NM_183243, intron 3 of 14) 3946 NM_001142574 3614 Hs.654401 NM_000883 ENSG00000106348 IMPDH1 IMPD|IMPD1|IMPDH-I|LCA11|RP10|sWSS2608 inosine monophosphate dehydrogenase 1 protein-coding 507-17 chr3 3611977 3612450 + 2.5 NA Intergenic Intergenic -187218 NM_001324188 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 365-13 chr19 28423528 28423758 + 2.5 NA Intergenic Intergenic -183045 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 355-30 chr5 76800714 76801058 + 2.5 NA Intergenic L2a|LINE|L2 -18144 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 307-4 chr10 82480267 82480421 + 2.5 NA intron (NR_163253, intron 3 of 10) L1MB7|LINE|L1 -247424 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 440-18 chr2 45594467 45594758 + 2.5 NA intron (NM_018079, intron 4 of 20) intron (NM_018079, intron 4 of 20) 16655 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 474.5-3 chr1 114841096 114841390 + 2.5 NA Intergenic Intergenic -13560 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 393.5-18 chr5 7759577 7759888 + 2.5 NA intron (NM_020546, intron 16 of 24) intron (NM_020546, intron 16 of 24) 91401 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 350-42 chr8 84933413 84933696 + 2.5 NA Intergenic Intergenic -173684 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 624.5-14 chr8 23847156 23847473 + 2.5 NA intron (NM_003155, intron 3 of 3) intron (NM_003155, intron 3 of 3) 7492 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 351-21 chr2 125090101 125090253 + 2.5 NA Intergenic Intergenic 1027808 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 283.5-32 chr6 52723966 52724155 + 2.5 NA Intergenic L1ME1|LINE|L1 21099 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 532.5-15 chr5 145908376 145908892 + 2.5 NA Intergenic Intergenic -27944 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 742-2 chr14 60400797 60401162 + 2.5 NA Intergenic Intergenic 77783 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 788.5 chr11 63289292 63289750 + 2.5 NA promoter-TSS (NR_134874) promoter-TSS (NR_134874) -382 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 318-15 chr16 70327639 70327897 + 2.5 NA intron (NM_007242, intron 7 of 11) intron (NM_007242, intron 7 of 11) 18979 NR_039997 100506083 Hs.635008 NR_039997 ENSG00000261777 LOC100506083 - uncharacterized LOC100506083 ncRNA 270.5-15 chr2 481320 481528 + 2.5 NA Intergenic LTR33A|LTR|ERVL 11231 NR_146437 727944 NR_146436 ENSG00000223985 LINC01874 - long intergenic non-protein coding RNA 1874 ncRNA 498.5-3 chr11 85532014 85532242 + 2.5 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 95142 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 613-3 chr10 116459098 116459398 + 2.5 NA intron (NM_001011709, intron 5 of 11) L2c|LINE|L2 31401 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 267-48 chr8 55919868 55920119 + 2.5 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) -17138 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 344-25 chr4 36583996 36584205 + 2.5 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 57800 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 268.5-36 chr9 20935258 20935433 + 2.5 NA intron (NM_017794, intron 30 of 45) intron (NM_017794, intron 30 of 45) 96295 NM_001321903 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 453-19 chr22 19643194 19643671 + 2.5 NA Intergenic L1ME3G|LINE|L1 -71071 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 421 chr1 47996806 47997063 + 2.5 NA 5' UTR (NM_001194986, exon 1 of 7) 5' UTR (NM_001194986, exon 1 of 7) 451 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 391.5-10 chr14 25093490 25093848 + 2.5 NA Intergenic Intergenic -43372 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 395.5-7 chr14 56183476 56183874 + 2.5 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 65264 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 522.5-4 chr11 57383611 57383978 + 2.5 NA Intergenic Intergenic -2644 NM_006093 10394 Hs.251386 NM_006093 ENSG00000156575 PRG3 MBP2|MBPH proteoglycan 3, pro eosinophil major basic protein 2 protein-coding 472.5-20 chr8 131715036 131715347 + 2.5 NA Intergenic MIRb|SINE|MIR -188902 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 311.5-36 chr5 171983788 171984046 + 2.5 NA intron (NM_012300, intron 1 of 12) L1ME3|LINE|L1 22956 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 381-26 chr6 118082112 118082290 + 2.5 NA intron (NM_001029858, intron 1 of 7) MER5B|DNA|hAT-Charlie -3702 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 318.5-33 chr7 30150571 30150726 + 2.5 NA intron (NM_152793, intron 2 of 2) intron (NM_152793, intron 2 of 2) 15662 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 359-22 chr2 21853178 21853384 + 2.5 NA Intergenic Intergenic -142629 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 321-16 chr21 27079407 27079558 + 2.5 NA Intergenic Intergenic -112394 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 365.5-22 chr8 17720927 17721114 + 2.5 NA intron (NM_001363062, intron 3 of 13) intron (NM_001363062, intron 3 of 13) 1201 NM_001001931 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 694.5-3 chr4 135334811 135335319 + 2.5 NA Intergenic Intergenic -211506 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 344.5-13 chr2 75196012 75196219 + 2.5 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 3405 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 445-15 chr22 38257744 38257925 + 2.5 NA intron (NM_001195072, intron 1 of 9) Charlie7|DNA|hAT-Charlie 14830 NM_001195071 25829 Hs.182626 NM_012264 ENSG00000198792 TMEM184B C22orf5|FM08|HS5O6A|HSPC256 transmembrane protein 184B protein-coding 532.5-14 chr5 55907055 55907391 + 2.5 NA intron (NM_001297572, intron 9 of 10) MIR3|SINE|MIR 53901 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 397-25 chr4 78611872 78612143 + 2.5 NA Intergenic AluJr|SINE|Alu -33987 NR_038308 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 707-8 chr21 34507233 34507568 + 2.5 NA intron (NM_000219, intron 2 of 3) intron (NM_000219, intron 2 of 3) 3915 NM_001270403 3753 Hs.121495 NM_000219 ENSG00000180509 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding 461.5-6 chr14 62037415 62037695 + 2.5 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -79802 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 414-3 chr1 209923650 209924017 + 2.5 NA Intergenic AluSx1|SINE|Alu -14341 NM_001146261 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 308.5-5 chr11 129413111 129413403 + 2.5 NA intron (NM_003658, intron 1 of 3) MIR|SINE|MIR 37409 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 401.5-10 chr14 66750977 66751244 + 2.5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 243703 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 309-17 chr19 51174586 51174810 + 2.5 NA intron (NR_110732, intron 1 of 4) L2|LINE|L2 7268 NR_110732 101928517 Hs.707693 NR_110732 ENSG00000269072 LOC101928517 - uncharacterized LOC101928517 ncRNA 420.5-19 chr4 52516691 52517039 + 2.5 NA Intergenic Intergenic 139674 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 282.5-8 chr10 119059476 119059724 + 2.5 NA TTS (NR_002917) TTS (NR_002917) 538 NR_002917 641451 Hs.688653 NR_002917 ENSG00000207468 SNORA19 ACA19 small nucleolar RNA, H/ACA box 19 snoRNA 652-10 chr2 69606102 69606443 + 2.5 NA intron (NM_014911, intron 2 of 21) L2c|LINE|L2 37467 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 248-19 chr5 164107133 164107275 + 2.5 NA Intergenic Intergenic 360198 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 476.5-8 chr15 58134642 58135019 + 2.5 NA Intergenic Intergenic -3339 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 250.5 chr1 14715811 14716025 + 2.5 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 117201 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 577-13 chr8 109980470 109980980 + 2.5 NA Intergenic AluSq2|SINE|Alu -4954 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 255-6 chr14 73247308 73247513 + 2.5 NA intron (NM_001365907, intron 4 of 25) intron (NM_001365907, intron 4 of 25) -1409 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 756.5 chr12 25930907 25931523 + 2.5 NA Intergenic Intergenic 26370 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 725.5-10 chr8 126481847 126482372 + 2.5 NA Intergenic Intergenic 76369 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 340-5 chr10 32812252 32812494 + 2.5 NA intron (NM_001321115, intron 31 of 43) L1M4b|LINE|L1 89099 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 220.5-24 chr4 152952038 152952126 + 2.5 NA intron (NM_001371116, intron 2 of 11) intron (NM_001371116, intron 2 of 11) 9099 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 240.5-2 chr10 76387794 76387896 + 2.5 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -500199 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1126.5 chr8 129442372 129443254 + 2.5 NA intron (NR_130920, intron 1 of 3) LTR33|LTR|ERVL 41329 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 278-24 chr6 99118506 99118647 + 2.5 NA Intergenic Intergenic -6033 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 451.5-6 chr11 23272529 23272850 + 2.5 NA Intergenic Intergenic 146501 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 251.5-22 chr5 22285920 22286059 + 2.5 NA intron (NM_001364104, intron 2 of 13) (ATTTAT)n|Simple_repeat|Simple_repeat -72139 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 232-21 chr3 59779487 59779660 + 2.5 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -121076 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 356.5-19 chr2 20963202 20963384 + 2.5 NA Intergenic Intergenic 80780 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 332.5-17 chr6 158027058 158027260 + 2.5 NA intron (NM_003898, intron 2 of 26) intron (NM_003898, intron 2 of 26) 10066 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 844.5-3 chr2 133517557 133518025 + 2.5 NA intron (NM_207481, intron 2 of 17) intron (NM_207481, intron 2 of 17) 50672 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 809.5-4 chr7 81669358 81669728 + 2.5 NA intron (NR_126025, intron 1 of 10) LTR33A_|LTR|ERVL 21863 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 945.5-2 chr4 74925644 74926083 + 2.5 NA Intergenic MER4B|LTR|ERV1 -7253 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 249-18 chr2 238977077 238977221 + 2.5 NA Intergenic L1MB8|LINE|L1 -50880 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 554.5-4 chr1 247641630 247642037 + 2.5 NA Intergenic Intergenic 31208 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 239-17 chr20 60384738 60384888 + 2.5 NA Intergenic L1MB8|LINE|L1 76339 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 377.5-11 chr20 14523577 14523792 + 2.5 NA intron (NM_001351663, intron 4 of 17) MamGyp-int|LTR|Gypsy -30700 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 691-4 chr2 57815524 57816125 + 2.5 NA Intergenic L1MEg|LINE|L1 -91827 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 415.5-3 chr12 42646372 42646566 + 2.5 NA promoter-TSS (NR_110042) promoter-TSS (NR_110042) 29 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LINC02402 - long intergenic non-protein coding RNA 2402 ncRNA 738.5-7 chr8 124911977 124912307 + 2.5 NA Intergenic MER21B|LTR|ERVL -29866 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 193-15 chr3 67923461 67923566 + 2.5 NA intron (NR_109992, intron 6 of 6) L1MD2|LINE|L1 -68079 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 405-13 chr16 73317836 73318061 + 2.5 NA Intergenic Intergenic -68857 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 434.5-3 chr12 26289344 26289762 + 2.5 NA Intergenic MIRb|SINE|MIR 93980 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 387.5-5 chr12 46085914 46086226 + 2.5 NA Intergenic MER83B-int|LTR|ERV1 -95496 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 779-3 chr3 152244475 152244849 + 2.5 NA Intergenic Intergenic -24267 NM_001314057 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 300.5-4 chr10 26549724 26550068 + 2.5 NA intron (NM_019043, intron 11 of 14) L1MA6|LINE|L1 29411 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 360-20 chr2 42367250 42367455 + 2.5 NA intron (NM_001319036, intron 1 of 3) intron (NM_001319036, intron 1 of 3) 1605 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 483-5 chr10 68663433 68663746 + 2.5 NA intron (NM_030625, intron 6 of 11) intron (NM_030625, intron 6 of 11) -57650 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 288.5-33 chr5 16591238 16591506 + 2.5 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -24554 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 398-40 chr9 100906424 100906652 + 2.5 NA Intergenic Intergenic -122189 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 590.5-4 chr10 5871404 5871640 + 2.5 NA intron (NM_019046, intron 7 of 7) intron (NM_019046, intron 7 of 7) -18050 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 611.5-11 chr9 89575630 89576035 + 2.5 NA Intergenic AluSg|SINE|Alu -29180 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 596-11 chr4 30616151 30616565 + 2.5 NA Intergenic Intergenic -104011 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 408.5-7 chr15 81114900 81115296 + 2.5 NA Intergenic MER65A|LTR|ERV1 -19172 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 223.5 chr1 42905848 42906003 + 2.5 NA Intergenic ERVL-B4-int|LTR|ERVL 48303 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 372-15 chr14 61524420 61524757 + 2.5 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 45606 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 320.5-8 chr14 67181838 67182009 + 2.5 NA TTS (NM_020806) TTS (NM_020806) -7517 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 799-3 chr3 182824018 182824665 + 2.5 NA intron (NM_014616, intron 2 of 29) L1MEb|LINE|L1 30837 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 357-7 chr10 110989684 110989889 + 2.5 NA TTS (NR_031614) TTS (NR_031614) 860 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 602.5-10 chr9 93249110 93249585 + 2.5 NA intron (NM_006648, intron 7 of 28) intron (NM_006648, intron 7 of 28) 64417 NM_001282394 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 358-44 chr9 25330238 25330450 + 2.5 NA Intergenic Intergenic 348514 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 814.5-4 chr14 60746398 60746908 + 2.5 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 11892 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 295.5-2 chr1 239055557 239055717 + 2.5 NA Intergenic LTR48B|LTR|ERV1 -330931 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 360.5 chr10 57274506 57274715 + 2.5 NA Intergenic L1MA9|LINE|L1 29949 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 235-24 chr20 10191996 10192141 + 2.5 NA intron (NR_040710, intron 2 of 4) MIR|SINE|MIR -26730 NM_001322907 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 295-22 chr2 26832568 26832735 + 2.5 NA Intergenic L1MC2|LINE|L1 -15481 NM_020134 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 494.5-12 chr6 141985627 141985931 + 2.5 NA Intergenic Intergenic 103020 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 222.5-11 chr2 34330623 34330840 + 2.5 NA Intergenic MIRb|SINE|MIR 263505 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 422-23 chr5 35545782 35546041 + 2.5 NA Intergenic L2c|LINE|L2 -71952 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 489.5-2 chr1 241577502 241577759 + 2.5 NA intron (NM_003679, intron 10 of 14) L1PB3|LINE|L1 45252 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 478.5-23 chr7 109887761 109888043 + 2.5 NA Intergenic Intergenic 72311 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 314.5-33 chr7 77920233 77920395 + 2.5 NA exon (NM_001127358, exon 8 of 18) exon (NM_001127358, exon 8 of 18) 80184 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 806.5 chr1 228226401 228226840 + 2.5 NA intron (NM_052843, intron 9 of 80) MLT1C|LTR|ERVL-MaLR -12956 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 463-10 chr14 68262813 68263097 + 2.5 NA intron (NM_133509, intron 7 of 10) MER39|LTR|ERV1 365832 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 436.5-18 chr8 86766899 86767096 + 2.5 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -23322 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 607.5-13 chr5 22496335 22496820 + 2.5 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -282727 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 520.5-15 chr6 48066213 48066451 + 2.5 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 2357 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 414-5 chr10 41887610 41887904 + 2.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 480288 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 494 chr1 167067658 167068052 + 2.5 NA intron (NM_005814, intron 3 of 6) L1MC4a|LINE|L1 22522 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 284.5-34 chr5 42539846 42540081 + 2.5 NA intron (NM_001242400, intron 2 of 10) L1M5|LINE|L1 -8080 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 742.5-6 chr20 31805976 31806467 + 2.5 NA Intergenic L1ME4b|LINE|L1 -13154 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 624.5-11 chr4 101234116 101234476 + 2.5 NA intron (NM_001130691, intron 1 of 12) L1PREC2|LINE|L1 6576 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 227 chr1 81349753 81349896 + 2.5 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 43429 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 407-36 chr9 83392716 83393003 + 2.5 NA intron (NM_174938, intron 1 of 13) Charlie23a|DNA|hAT-Charlie -60898 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 543.5-15 chr5 123763366 123763804 + 2.5 NA Intergenic L1MA4|LINE|L1 218168 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 275.5-25 chr4 14192821 14192950 + 2.5 NA Intergenic Intergenic 80917 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 338-2 chr1 24072302 24072500 + 2.5 NA intron (NM_152372, intron 23 of 36) intron (NM_152372, intron 23 of 36) 39734 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 393-29 chr5 56097538 56097705 + 2.5 NA Intergenic Intergenic 102454 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 570-11 chr14 81682503 81682801 + 2.5 NA Intergenic Intergenic -59591 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 471.5-15 chr5 22897590 22897843 + 2.5 NA Intergenic Intergenic -44372 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 439.5 chr1 2169201 2169507 + 2.5 NA intron (NR_146911, intron 7 of 15) intron (NR_146911, intron 7 of 15) 14521 NR_146290 100506504 Hs.742283 NR_146290 ENSG00000182873 PRKCZ-AS1 - PRKCZ antisense RNA 1 ncRNA 633.5-2 chr10 42939250 42939648 + 2.5 NA Intergenic MER47B|DNA|TcMar-Tigger 42058 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 455.5-16 chr3 112229544 112229884 + 2.5 NA intron (NM_001320531, intron 12 of 27).2 intron (NM_001320531, intron 12 of 27).2 64502 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 395-17 chr2 116117817 116118210 + 2.5 NA Intergenic Intergenic 774198 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 356-19 chr2 24797918 24798128 + 2.5 NA intron (NM_001322101, intron 2 of 7) Tigger4a|DNA|TcMar-Tigger 4598 NM_001322101 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 238-6 chr1 194177556 194177750 + 2.5 NA Intergenic (ATATGAA)n|Simple_repeat|Simple_repeat 872908 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 418-33 chr8 139924929 139925149 + 2.5 NA intron (NM_001160372, intron 19 of 22) L1MEf|LINE|L1 175496 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 498.5-16 chr6 92682954 92683318 + 2.5 NA Intergenic Intergenic 736423 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 488.5 chr1 198072102 198072476 + 2.5 NA Intergenic HAL1ME|LINE|L1 -84709 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 478-13 chr2 33567179 33567445 + 2.5 NA non-coding (NR_146505, exon 1 of 4) non-coding (NR_146505, exon 1 of 4) 2118 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 265.5-4 chr10 57853475 57853616 + 2.5 NA Intergenic L2|LINE|L2 414349 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 325.5-27 chr7 81030203 81030469 + 2.5 NA Intergenic Intergenic -107947 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 239-5 chr12 5567732 5567929 + 2.5 NA intron (NM_001278596, intron 24 of 25) intron (NM_001278596, intron 24 of 25) 73698 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 371-18 chr3 111181054 111181328 + 2.5 NA intron (NM_001243288, intron 7 of 8) L1ME2|LINE|L1 109375 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 477.5-17 chr3 98438968 98439260 + 2.5 NA Intergenic Intergenic -30366 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 373-25 chr2 166549097 166549296 + 2.5 NA Intergenic Intergenic -62225 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 295-3 chr1 77076953 77077150 + 2.5 NA Intergenic Intergenic 16908 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 310-20 chr19 4029294 4029473 + 2.5 NA intron (NM_015897, intron 7 of 10) intron (NM_015897, intron 7 of 10) 21647 NM_015897 51588 Hs.105779 NM_015897 ENSG00000105229 PIAS4 PIAS-gamma|PIASY|Piasg|ZMIZ6 protein inhibitor of activated STAT 4 protein-coding 804 chr11 34145702 34146248 + 2.5 NA intron (NM_001144030, intron 26 of 26) intron (NM_001144030, intron 26 of 26) 40346 NM_024662 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 347-20 chr5 2955816 2956097 + 2.5 NA Intergenic L1MA5|LINE|L1 38102 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 383-4 chr10 25831400 25831737 + 2.5 NA Intergenic Intergenic 102142 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 359.5-17 chr17 61650959 61651190 + 2.5 NA Intergenic L1MEf|LINE|L1 -59855 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 273-18 chr2 74534126 74534338 + 2.5 NA TTS (NR_135772) TTS (NR_135772) -4526 NM_181575 550 Hs.411480 NM_181575 ENSG00000115307 AUP1 - AUP1 lipid droplet regulating VLDL assembly factor protein-coding 284-14 chr16 50896777 50897007 + 2.5 NA intron (NR_039672, intron 2 of 6) L1MEc|LINE|L1 18119 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 360-35 chr4 21831949 21832211 + 2.5 NA intron (NM_147182, intron 1 of 8) L1M1|LINE|L1 21108 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 601.5 chr1 73670844 73671110 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR -3702 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 322.5-26 chr7 4087986 4088176 + 2.5 NA intron (NM_152744, intron 22 of 44) MIR|SINE|MIR -41604 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 435.5-8 chr21 19730915 19731228 + 2.5 NA Intergenic Intergenic 168684 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 933 chr11 122090419 122091132 + 2.5 NA non-coding (NR_137196, exon 2 of 2) non-coding (NR_137196, exon 2 of 2) 9069 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 414.5-10 chr17 79103607 79103852 + 2.5 NA intron (NM_001082575, intron 7 of 14) intron (NM_001082575, intron 7 of 14) 28792 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 423.5-3 chr10 4552991 4553341 + 2.5 NA Intergenic Intergenic -102990 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 506-31 chr9 36601792 36602100 + 2.5 NA intron (NM_001256693, intron 5 of 15) L1MB2|LINE|L1 29051 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 797.5-3 chr3 78375169 78375656 + 2.5 NA Intergenic Intergenic -326449 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 316.5-3 chr1 95042880 95043011 + 2.5 NA intron (NM_001305242, intron 2 of 4) HAL1|LINE|L1 -18651 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 527-12 chr17 68254206 68254441 + 2.5 NA intron (NR_144442, intron 4 of 6) intron (NR_144442, intron 4 of 6) -4847 NM_001352903 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 470.5 chr10 81909960 81910358 + 2.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 32472 NR_163252 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 625.5-2 chr11 59715521 59715847 + 2.5 NA Intergenic Intergenic -1839 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 365.5-2 chr1 105056036 105056294 + 2.5 NA Intergenic L2c|LINE|L2 562770 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 326.5-25 chr4 178991285 178991595 + 2.5 NA Intergenic Intergenic -1083504 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 379.5-21 chr7 49395374 49395696 + 2.5 NA Intergenic Intergenic -378103 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 299.5-37 chrX 109352688 109352911 + 2.5 NA Intergenic Intergenic 129287 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 351.5-16 chr22 19747561 19747821 + 2.5 NA Intergenic Intergenic -9012 NM_005992 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 406.5-20 chr3 108887838 108888101 + 2.5 NA Intergenic L2b|LINE|L2 65183 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 370.5-10 chr16 74472450 74472712 + 2.5 NA non-coding (NR_027264, exon 14 of 27) non-coding (NR_027264, exon 14 of 27) -51111 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 345.5-11 chr14 65068411 65068625 + 2.5 NA intron (NM_197957, intron 3 of 3) L1MC3|LINE|L1 -21400 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 601-4 chr5 32119820 32120100 + 2.5 NA Intergenic L1MA7|LINE|L1 54359 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 311.5-4 chr1 81864644 81865021 + 2.5 NA intron (NM_001366002, intron 3 of 20) AluSx1|SINE|Alu 62379 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 615-15 chr7 92717614 92718015 + 2.5 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) 116145 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 344-14 chr15 46028267 46028497 + 2.5 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 323187 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 290.5-30 chr8 101940657 101940843 + 2.5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -43682 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 843.5 chr2 196313407 196313885 + 2.5 NA intron (NM_020760, intron 10 of 28) intron (NM_020760, intron 10 of 28) 48531 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 348.5-26 chr8 86858258 86858438 + 2.5 NA Intergenic Intergenic -8067 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 617.5-10 chr3 41684841 41685156 + 2.5 NA intron (NR_136342, intron 25 of 34) HERV35I-int|LTR|ERV1 277105 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 676.5-5 chr2 21621625 21622117 + 2.5 NA Intergenic AluSc|SINE|Alu 88781 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 365.5-16 chr4 180109720 180110009 + 2.5 NA Intergenic Intergenic 1049285 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 518.5-20 chr8 28652877 28653212 + 2.5 NA Intergenic L1MC1|LINE|L1 48420 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 462.5-2 chr10 27836574 27836882 + 2.5 NA intron (NM_018076, intron 19 of 19) intron (NM_018076, intron 19 of 19) -90909 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 228.5-35 chrX 150956668 150956818 + 2.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -23764 NM_001301231 3149 Hs.19114 NM_005342 ENSG00000029993 HMGB3 HMG-2a|HMG-4|HMG2A|HMG4 high mobility group box 3 protein-coding 429.5-12 chr2 138471664 138471908 + 2.5 NA Intergenic Intergenic -29984 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 704-9 chr5 140863834 140864356 + 2.5 NA 3' UTR (NM_031859, exon 1 of 1) 3' UTR (NM_031859, exon 1 of 1) -3418 NM_018902 56138 Hs.199343 NM_018902 ENSG00000249158 PCDHA11 CNR7|CNRN7|CNRS7|CRNR7|PCDH-ALPHA11 protocadherin alpha 11 protein-coding 388.5-16 chr4 62500262 62500459 + 2.5 NA Intergenic Intergenic -338595 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 473-4 chr11 31939836 31940129 + 2.5 NA Intergenic L1ME3D|LINE|L1 101336 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 235.5-25 chr7 34116488 34116612 + 2.5 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 211011 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 392-34 chr7 78885221 78885512 + 2.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -123622 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 257-46 chr8 87451048 87451181 + 2.5 NA Intergenic Intergenic 422901 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 415-30 chr8 107329189 107329441 + 2.5 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 7200 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 259-18 chr3 95622245 95622440 + 2.5 NA Intergenic Intergenic 60851 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 570-26 chr9 70337183 70337463 + 2.5 NA intron (NM_015110, intron 17 of 24) Tigger10|DNA|TcMar-Tigger 77334 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 472.5-5 chr14 33903611 33903961 + 2.5 NA Intergenic L1MEg|LINE|L1 47288 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 467.5-15 chr4 36885532 36885965 + 2.5 NA Intergenic L1PA15|LINE|L1 -116031 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 477-17 chr4 12406251 12406514 + 2.5 NA Intergenic Intergenic 182931 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 611.5-3 chr15 90191003 90191471 + 2.5 NA promoter-TSS (NM_001324031) promoter-TSS (NM_001324031) -684 NM_001324031 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 477-4 chr11 63826586 63826831 + 2.5 NA intron (NM_138471, intron 5 of 5) intron (NM_138471, intron 5 of 5) -12220 NM_001039469 2011 Hs.567261 NM_004954 ENSG00000072518 MARK2 EMK-1|EMK1|PAR-1|Par-1b|Par1b microtubule affinity regulating kinase 2 protein-coding 569-15 chr4 98830694 98831154 + 2.5 NA Intergenic L1MC|LINE|L1 98209 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 358-10 chr10 110924569 110924811 + 2.5 NA intron (NR_136749, intron 1 of 7) intron (NR_136749, intron 1 of 7) 5147 NM_001269039 8036 Hs.104315 NM_007373 ENSG00000108061 SHOC2 SIAA0862|SOC2|SUR8 SHOC2 leucine rich repeat scaffold protein protein-coding 736-2 chr11 40433910 40434458 + 2.5 NA intron (NM_020929, intron 2 of 4) MIRb|SINE|MIR -141054 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 378-22 chr5 133143975 133144255 + 2.5 NA Intergenic L2|LINE|L2 92102 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 279-13 chr15 69333812 69333950 + 2.5 NA intron (NM_001104554, intron 1 of 8) HUERS-P1-int|LTR|ERV1 19478 NM_001104554 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 386-8 chr11 108119013 108119239 + 2.5 NA Intergenic MIR|SINE|MIR -2441 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 530-16 chr3 17644443 17644887 + 2.5 NA intron (NM_001349090, intron 1 of 21) intron (NM_001349090, intron 1 of 21) 55355 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 350.5-14 chr6 49733888 49734048 + 2.5 NA intron (NM_001368123, intron 4 of 7) intron (NM_001368123, intron 4 of 7) 10420 NM_001368123 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 453.5-4 chr10 78213150 78213398 + 2.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -35351 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 449.5-14 chr6 3940919 3941124 + 2.5 NA Intergenic Intergenic -80279 NR_146785 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 267-34 chr4 75613668 75613819 + 2.5 NA intron (NM_003948, intron 3 of 11) L1ME2z|LINE|L1 16785 NM_003948 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 269.5-15 chr14 69257866 69258048 + 2.5 NA Intergenic Intergenic -2201 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 558-14 chr3 108012812 108013225 + 2.5 NA Intergenic Intergenic 78070 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 229.5-37 chr6 51420645 51420775 + 2.5 NA Intergenic MIRb|SINE|MIR -201160 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 365.5-13 chr4 72821459 72821631 + 2.5 NA Intergenic AluSp|SINE|Alu 248171 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 499.5-8 chr2 67411577 67411802 + 2.5 NA 3' UTR (NM_019002, exon 6 of 6) 3' UTR (NM_019002, exon 6 of 6) 14356 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 508-5 chr14 68943568 68943845 + 2.5 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 35596 NM_001130005 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 587.5-10 chr18 70683481 70683884 + 2.5 NA Intergenic Intergenic -32728 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 241.5-27 chr5 16734023 16734213 + 2.5 NA intron (NM_012334, intron 19 of 40) A-rich|Low_complexity|Low_complexity -117060 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 361-35 chrX 154685463 154685688 + 2.5 NA intron (NR_104114, intron 7 of 8) L1M5|LINE|L1 -31996 NM_020994 30848 Hs.87225 NM_020994 ENSG00000126890 CTAG2 CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B cancer/testis antigen 2 protein-coding 193.5-31 chr8 118645685 118645832 + 2.5 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -23795 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 351.5-8 chr18 53009144 53009374 + 2.5 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -227842 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 557.5-6 chr16 73160714 73160943 + 2.5 NA Intergenic Intergenic -16381 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 533.5-11 chr5 108449695 108450025 + 2.5 NA Intergenic HAL1b|LINE|L1 -67762 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 341.5-13 chr17 28533320 28533505 + 2.5 NA intron (NM_001369369, intron 6 of 8) intron (NM_001369369, intron 6 of 8) 9471 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding 775.5-3 chr5 112090044 112090604 + 2.5 NA Intergenic L1MA2|LINE|L1 -70202 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 651.5-10 chr9 32066700 32067125 + 2.5 NA Intergenic Intergenic -317691 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 444-12 chr17 69483624 69484003 + 2.5 NA intron (NR_145982, intron 1 of 1) L1MB8|LINE|L1 1719 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 441-15 chr17 58300476 58300727 + 2.5 NA TTS (NM_001261835) TTS (NM_001261835) -19666 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 324.5-24 chr2 237356999 237357128 + 2.5 NA intron (NM_057166, intron 20 of 40) intron (NM_057166, intron 20 of 40) 57101 NM_057164 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 277 chr1 14279507 14279658 + 2.5 NA Intergenic Intergenic 140391 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 539.5-19 chr6 69795631 69795986 + 2.5 NA intron (NM_018368, intron 1 of 15) intron (NM_018368, intron 1 of 15) 658 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 187-25 chr8 57585870 57585993 + 2.5 NA Intergenic Intergenic -160218 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 458.5-3 chr10 78234848 78235039 + 2.5 NA Intergenic Intergenic -13682 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 335-46 chr6 52363266 52363556 + 2.5 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) 1260 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 420.5-22 chr8 132541750 132542046 + 2.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 19581 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 485-9 chr2 109396415 109396702 + 2.5 NA intron (NM_001099289, intron 3 of 9) intron (NM_001099289, intron 3 of 9) -82933 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 477-23 chr7 134209164 134209376 + 2.5 NA exon (NM_001365701, exon 16 of 16) exon (NM_001365701, exon 16 of 16) 81930 NM_001365701 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 379-11 chr11 74653562 74653778 + 2.5 NA Intergenic L1MEc|LINE|L1 57697 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 853-2 chr4 88003873 88004423 + 2.5 NA Intergenic L2a|LINE|L2 -3487 NM_000297 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 349-39 chr8 125314974 125315157 + 2.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -115293 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 311.5-38 chr6 97002412 97002583 + 2.5 NA intron (NM_001286251, intron 3 of 8) L1PA15|LINE|L1 -7579 NM_001323261 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 351.5-19 chr5 132547432 132547625 + 2.5 NA Intergenic L1MC3|LINE|L1 -4006 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 403-30 chr21 45758543 45758809 + 2.5 NA intron (NM_001348243, intron 3 of 15) L1MB7|LINE|L1 10662 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 423 chr10 102924417 102924765 + 2.5 NA intron (NM_199076, intron 1 of 6) intron (NM_199076, intron 1 of 6) -6256 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 310-18 chr18 1170511 1170713 + 2.5 NA Intergenic Intergenic 189017 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 522.5-3 chr10 31692037 31692372 + 2.5 NA Intergenic MSTA|LTR|ERVL-MaLR 216722 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 243-13 chr16 3535454 3535573 + 2.5 NA intron (NM_001330454, intron 12 of 12) intron (NM_001330454, intron 12 of 12) 25619 NM_024793 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 622.5-2 chr12 22799948 22800455 + 2.5 NA Intergenic LTR78|LTR|ERV1 175030 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 484.5-10 chr15 41540742 41541112 + 2.5 NA intron (NM_015540, intron 1 of 24) MER20|DNA|hAT-Charlie 3330 NM_015540 26015 Hs.371045 NM_015540 ENSG00000103932 RPAP1 - RNA polymerase II associated protein 1 protein-coding 481.5-9 chr3 12203549 12203885 + 2.5 NA Intergenic Intergenic -44805 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 593-4 chr14 62562416 62563000 + 2.5 NA Intergenic Intergenic -422735 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 555-18 chr4 30629552 30629808 + 2.5 NA Intergenic Intergenic -90689 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 928.5 chr11 133419395 133420126 + 2.5 NA intron (NM_001012393, intron 1 of 7) MER63C|DNA|hAT-Blackjack 112741 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 191-6 chr2 121479540 121479659 + 2.5 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -51281 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 562-7 chr20 40646931 40647373 + 2.5 NA Intergenic L2c|LINE|L2 42084 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 322-20 chr8 115058986 115059234 + 2.5 NA Intergenic Intergenic 608903 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 315-9 chr11 22680268 22680553 + 2.5 NA intron (NM_005256, intron 1 of 6) intron (NM_005256, intron 1 of 6) 5636 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 399-10 chr12 81610803 81611092 + 2.5 NA intron (NM_001220474, intron 2 of 30) L1PA16|LINE|L1 -12576 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 459-20 chr21 43771641 43772019 + 2.5 NA Intergenic THE1C|LTR|ERVL-MaLR 4545 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 475.5-2 chr11 40299387 40299929 + 2.5 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) -6528 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 276-44 chr9 73845391 73845501 + 2.5 NA Intergenic AluSz|SINE|Alu -526085 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 311-21 chr2 221731279 221731468 + 2.5 NA Intergenic Intergenic -157171 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 465.5-15 chr3 14153770 14154195 + 2.5 NA exon (NM_001354727, exon 10 of 16) exon (NM_001354727, exon 10 of 16) 24619 NM_001354727 7508 Hs.475538 NM_004628 ENSG00000154767 XPC RAD4|XP3|XPCC|p125 XPC complex subunit, DNA damage recognition and repair factor protein-coding 475-33 chr8 116989092 116989545 + 2.5 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 38343 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 594.5-6 chr5 15523740 15524062 + 2.5 NA intron (NM_001278317, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 22463 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 441-37 chr7 27807348 27807546 + 2.5 NA intron (NM_001362795, intron 13 of 14) L1MC4a|LINE|L1 67352 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 428.5-12 chr14 69032518 69032689 + 2.5 NA Intergenic AluJb|SINE|Alu 52921 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 683 chr14 59721915 59722408 + 2.5 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -75141 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 581.5-14 chr3 16032407 16032771 + 2.5 NA Intergenic L1ME3A|LINE|L1 -142091 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 350-26 chr4 144832649 144833130 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 186733 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 464-25 chr7 36559016 36559257 + 2.5 NA intron (NM_001177507, intron 12 of 19) L1PA16|LINE|L1 40984 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 258.5-21 chr5 106395519 106395708 + 2.5 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 615401 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 451-10 chr11 78980235 78980473 + 2.5 NA intron (NM_001098816, intron 6 of 33) MIR|SINE|MIR -405490 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 511-5 chr10 68482473 68482805 + 2.5 NA non-coding (NR_136737, exon 8 of 8) non-coding (NR_136737, exon 8 of 8) -10518 NR_102264 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 310.5-16 chr15 59788545 59788867 + 2.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -99386 NM_001368061 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 150.5-11 chr2 147977121 147977235 + 2.5 NA intron (NM_181742, intron 1 of 13) MIR|SINE|MIR 43559 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 428-27 chr7 92714883 92715142 + 2.5 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) 118947 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 741-2 chr2 135944491 135944994 + 2.5 NA intron (NM_001293312, intron 3 of 14) intron (NM_001293312, intron 3 of 14) -40434 NR_110199 101928243 Hs.602178 NR_110199 ENSG00000231890 DARS-AS1 - DARS antisense RNA 1 ncRNA 402.5-19 chr2 146512945 146513165 + 2.5 NA Intergenic Charlie8|DNA|hAT-Charlie -74002 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 388-33 chr6 132246769 132247040 + 2.5 NA Intergenic Intergenic 112926 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 488.5-5 chr15 36942867 36943112 + 2.5 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) 29912 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 608-17 chr8 111960635 111960915 + 2.5 NA Intergenic L1P4a|LINE|L1 584136 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 589-8 chr2 168077082 168077473 + 2.5 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) -136133 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 553-12 chr7 45258269 45258577 + 2.5 NA Intergenic Intergenic 100632 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 633-11 chr7 41961724 41962117 + 2.5 NA 3' UTR (NM_000168, exon 15 of 15) 3' UTR (NM_000168, exon 15 of 15) -258830 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 353-28 chr4 31275745 31275903 + 2.5 NA Intergenic Intergenic 104680 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 327.5-15 chr22 36026367 36026523 + 2.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 2092 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 446-19 chr19 39734528 39734778 + 2.5 NA intron (NM_001828, intron 2 of 3) intron (NM_001828, intron 2 of 3) 3376 NM_001828 1178 Hs.889 NM_001828 ENSG00000105205 CLC GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN Charcot-Leyden crystal galectin protein-coding 343.5-35 chrX 74452179 74452451 + 2.5 NA intron (NM_006517, intron 1 of 5) intron (NM_006517, intron 1 of 5) 30822 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 446.5-21 chr6 35296026 35296299 + 2.5 NA TTS (NM_003427) TTS (NM_003427) -1656 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 497-9 chr2 153482832 153483204 + 2.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -4256 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 402-26 chr5 139729955 139730204 + 2.5 NA Intergenic FLAM_A|SINE|Alu 16144 NR_105053 101929696 Hs.147408 NR_105052 ENSG00000249131 PSD2-AS1 - PSD2 antisense RNA 1 ncRNA 311-12 chr17 69426033 69426304 + 2.5 NA intron (NM_002758, intron 1 of 11) FLAM_A|SINE|Alu 11471 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 605-8 chr5 164020863 164021316 + 2.5 NA Intergenic Intergenic 446313 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 545.5-2 chr12 20681551 20681900 + 2.5 NA 3' UTR (NM_001244683, exon 15 of 15) 3' UTR (NM_001244683, exon 15 of 15) -13630 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 414.5-13 chr20 39322183 39322399 + 2.5 NA Intergenic L1MC5|LINE|L1 -97543 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 332-23 chr3 20738582 20738805 + 2.5 NA Intergenic Intergenic 396225 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 564-24 chr5 158301643 158301890 + 2.5 NA Intergenic Intergenic 108007 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 226-19 chr6 160968779 160968961 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -22857 NM_001363582 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 526.5-7 chr13 83891299 83891753 + 2.5 NA Intergenic Intergenic -9052 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 636.5-7 chr9 136412273 136412680 + 2.5 NA intron (NM_015160, intron 2 of 12) intron (NM_015160, intron 2 of 12) 1818 NM_015160 23203 Hs.495471 NM_015160 ENSG00000165688 PMPCA Alpha-MPP|CLA1|CPD3|INPP5E|P-55|SCAR2 peptidase, mitochondrial processing alpha subunit protein-coding 381.5-15 chr3 180215957 180216177 + 2.5 NA Intergenic Intergenic -179130 NM_001256751 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 282-26 chr8 106519422 106519586 + 2.5 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) 71580 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 777-8 chr8 116933426 116933833 + 2.5 NA Intergenic Intergenic -4578 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 596-15 chr5 160630564 160631060 + 2.5 NA intron (NM_001366652, intron 12 of 24) intron (NM_001366652, intron 12 of 24) 54579 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 258-25 chr6 93827690 93827818 + 2.5 NA Intergenic L1MEi|LINE|L1 109451 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 873 chr1 42017431 42018119 + 2.5 NA intron (NR_038261, intron 1 of 3) L1ME3A|LINE|L1 18159 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 755.5-4 chr4 40410839 40411246 + 2.5 NA Intergenic L1MB5|LINE|L1 75709 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 645-9 chr2 24412835 24413511 + 2.5 NA Intergenic L1ME4b|LINE|L1 -52637 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 376.5-20 chr3 86373395 86373582 + 2.5 NA Intergenic Intergenic -108455 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 355.5-6 chr12 118296914 118297098 + 2.5 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 62699 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 454-13 chr2 114557924 114558203 + 2.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 96486 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 666-9 chr4 66158208 66158510 + 2.5 NA Intergenic L1MA9|LINE|L1 -118465 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 390-14 chr2 28940446 28940758 + 2.5 NA intron (NM_015131, intron 14 of 17) intron (NM_015131, intron 14 of 17) 12619 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 671 chr1 221731852 221732318 + 2.5 NA intron (NR_111940, intron 1 of 2) intron (NR_111940, intron 1 of 2) 4815 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 244-6 chr14 27204174 27204350 + 2.5 NA Intergenic Intergenic 295620 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 459-15 chr2 178551905 178552379 + 2.5 NA exon (NM_133432, exon 164 of 192) exon (NM_133432, exon 164 of 192) 28951 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 225-32 chr7 17508697 17508849 + 2.5 NA intron (NR_110013, intron 1 of 3) L1M4|LINE|L1 50136 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 572-15 chr5 162799603 162799967 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -637786 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 742.5-10 chr5 124913961 124914545 + 2.5 NA Intergenic L1M5|LINE|L1 -122578 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 421-6 chr10 68983452 68983657 + 2.5 NA 3' UTR (NM_004728, exon 15 of 15) 3' UTR (NM_004728, exon 15 of 15) -5249 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 257.5-5 chr1 205489590 205489795 + 2.5 NA Intergenic Intergenic -14977 NM_212503 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 410.5-9 chr2 73310368 73310581 + 2.5 NA Intergenic L1MA9|LINE|L1 -16926 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 597.5-8 chr8 130124504 130124782 + 2.5 NA intron (NM_001362925, intron 18 of 29) intron (NM_001362925, intron 18 of 29) -39875 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 818.5-5 chr6 144597535 144598013 + 2.5 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 192119 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 356.5-42 chr8 136503555 136503752 + 2.5 NA Intergenic Intergenic -27145 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 573-19 chr8 77011488 77011887 + 2.5 NA Intergenic Intergenic -10643 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 176.5-4 chr14 46020139 46020299 + 2.5 NA Intergenic Intergenic -43940 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 549.5-2 chr1 79798095 79798314 + 2.5 NA Intergenic (TCATTT)n|Simple_repeat|Simple_repeat -737551 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 433-2 chr1 203320392 203320725 + 2.5 NA Intergenic Intergenic 15039 NM_006763 7832 Hs.519162 NM_006763 ENSG00000159388 BTG2 APRO1|PC3|TIS21 BTG anti-proliferation factor 2 protein-coding 454.5-14 chr3 102172586 102172956 + 2.5 NA Intergenic Intergenic 9066 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 433.5-19 chr2 147037168 147037457 + 2.5 NA Intergenic Intergenic 450255 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 998-2 chr3 14369859 14370541 + 2.5 NA Intergenic AluJo|SINE|Alu -17632 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 291.5-17 chr6 23367157 23367335 + 2.5 NA Intergenic L2a|LINE|L2 -649322 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 347.5 chr1 62885388 62885567 + 2.5 NA Intergenic Intergenic 101345 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 375.5-5 chr13 61047431 61047655 + 2.5 NA Intergenic Intergenic 152337 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 459-9 chr2 9707552 9707767 + 2.5 NA Intergenic AluSx1|SINE|Alu -76662 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 271-21 chr4 127302510 127302647 + 2.5 NA Intergenic Intergenic -330379 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 695.5-3 chr11 7007152 7007488 + 2.5 NA intron (NM_013249, intron 1 of 2) L1MEh|LINE|L1 13026 NR_148988 7761 Hs.445849 NM_013249 ENSG00000149050 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 604-17 chr8 78591049 78591496 + 2.5 NA intron (NM_006823, intron 2 of 3) intron (NM_006823, intron 2 of 3) -32769 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 223-30 chr8 141912360 141912594 + 2.5 NA Intergenic L1MEc|LINE|L1 -126164 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 330-37 chr6 94765352 94765517 + 2.5 NA Intergenic Intergenic 812017 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 660-2 chr1 112382685 112383034 + 2.5 NA Intergenic Intergenic -13355 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 335-48 chr7 61734907 61735101 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 1569052 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 560-18 chr6 51634792 51635129 + 2.5 NA intron (NM_138694, intron 64 of 66) AluJo|SINE|Alu 13090 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 548.5-11 chr20 40406356 40406737 + 2.5 NA Intergenic Intergenic 282690 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 415.5 chr1 86369554 86369775 + 2.5 NA intron (NM_001007022, intron 10 of 17) intron (NM_001007022, intron 10 of 17) -11977 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 384.5-11 chr17 70665121 70665410 + 2.5 NA Intergenic Intergenic 495730 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 443.5-13 chr4 87783378 87783639 + 2.5 NA Intergenic Intergenic -16046 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 322-13 chr2 56269742 56269926 + 2.5 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -84064 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 274.5-7 chr12 86347794 86347978 + 2.5 NA intron (NM_001351286, intron 3 of 7) HAL1ME|LINE|L1 -90587 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 671-4 chr11 111257731 111258074 + 2.5 NA intron (NM_198498, intron 2 of 4) AluSz|SINE|Alu 12177 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 303-5 chr1 228188453 228188633 + 2.5 NA Intergenic L1MA4|LINE|L1 13973 NM_001310327 200205 Hs.237017 NM_001010867 ENSG00000181873 IBA57 C1orf69|MMDS3|SPG74 iron-sulfur cluster assembly factor IBA57 protein-coding 801-12 chrX 65076620 65077066 + 2.5 NA Intergenic L1MDb|LINE|L1 -42102 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 709-10 chr7 113828586 113829152 + 2.5 NA Intergenic L2a|LINE|L2 90140 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 725.5-3 chr10 68247764 68248321 + 2.5 NA Intergenic Tigger12|DNA|TcMar-Tigger -15929 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 680.5-6 chrX 141609943 141610387 + 2.5 NA intron (NR_037183, intron 3 of 3) MLT1D|LTR|ERVL-MaLR -15699 NM_001318917 645188 Hs.679802 NM_001318917 LOC645188 SPANX-L uncharacterized LOC645188 protein-coding 444-8 chr16 53407149 53407442 + 2.5 NA Intergenic L2a|LINE|L2 -27176 NM_001323610 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 390-22 chr3 59382963 59383179 + 2.5 NA Intergenic Intergenic 275426 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 645-5 chr12 87116121 87116497 + 2.5 NA Intergenic Intergenic -214430 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 471-18 chr17 70928774 70929051 + 2.5 NA Intergenic Intergenic 273267 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 314-24 chr20 49444152 49444503 + 2.5 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 38341 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 252-6 chr12 14651458 14651626 + 2.5 NA intron (NM_004963, intron 14 of 26) intron (NM_004963, intron 14 of 26) 45057 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 542-6 chr13 57648802 57649140 + 2.5 NA intron (NM_001040429, intron 1 of 3) intron (NM_001040429, intron 1 of 3) 17227 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 255-21 chr3 49307512 49307673 + 2.5 NA intron (NM_199443, intron 7 of 20) L2b|LINE|L2 -30360 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 520.5-20 chr8 78988576 78988888 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR 151203 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 454.5-24 chr6 136145132 136145385 + 2.5 NA intron (NM_018945, intron 3 of 12) L1MC4|LINE|L1 -72431 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 321.5-30 chr6 149372227 149372378 + 2.5 NA intron (NM_001292034, intron 2 of 6) L1MC5a|LINE|L1 -27960 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 490-32 chr6 75185107 75185398 + 2.5 NA intron (NM_004370, intron 8 of 65) L1PA13|LINE|L1 20801 NM_080645 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 426-34 chr4 78416258 78416432 + 2.5 NA intron (NM_001166133, intron 32 of 41) L1MB2|LINE|L1 127360 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 342 chr1 51418231 51418493 + 2.5 NA intron (NM_001159969, intron 1 of 12) intron (NM_001159969, intron 1 of 12) 3733 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 402.5-11 chr17 57218891 57219067 + 2.5 NA Intergenic MER2|DNA|TcMar-Tigger -36872 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 441.5-19 chr9 4245697 4245947 + 2.5 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 54246 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 487.5-24 chr5 87249247 87249616 + 2.5 NA Intergenic L1ME3A|LINE|L1 -10230 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 428-17 chr22 19446550 19446989 + 2.5 NA intron (NM_173793, intron 2 of 2) AluJr|SINE|Alu 1463 NM_001166242 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 497.5-10 chr20 28814781 28815184 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -212317 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 683.5-6 chr4 96306068 96306426 + 2.5 NA Intergenic Intergenic -4456 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 407-6 chr10 119499058 119499312 + 2.5 NA TTS (NM_002925) TTS (NM_002925) 37348 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 508.5-18 chr5 90610976 90611236 + 2.5 NA intron (NR_003149, intron 1 of 89) intron (NR_003149, intron 1 of 89) 52309 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 414-47 chr8 137631675 137631906 + 2.5 NA Intergenic Intergenic -218202 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 326-14 chr12 51137378 51137701 + 2.5 NA intron (NM_005653, intron 1 of 14) intron (NM_005653, intron 1 of 14) 35596 NM_001173452 7024 Hs.48849 NM_005653 ENSG00000135457 TFCP2 LBP1C|LSF|LSF1D|SEF|TFCP2C transcription factor CP2 protein-coding 668.5-2 chr2 37566547 37567102 + 2.5 NA Intergenic Intergenic 105375 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 417.5-16 chr4 82729774 82729961 + 2.5 NA intron (NM_001037582, intron 1 of 4) MER34A1|LTR|ERV1 23563 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 462.5-11 chr2 209578510 209578781 + 2.5 NA promoter-TSS (NM_001363913) promoter-TSS (NM_001363913) -691 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 569.5-9 chr2 157654372 157654886 + 2.5 NA Intergenic MLT2A1|LTR|ERVL -25765 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 391-13 chr2 153177432 153177618 + 2.5 NA Intergenic L1MEg|LINE|L1 301237 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 402.5-28 chr5 154319292 154319533 + 2.5 NA intron (NM_198321, intron 3 of 11) intron (NM_198321, intron 3 of 11) -27694 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 375.5-17 chr2 234551805 234551976 + 2.5 NA Intergenic Intergenic -54809 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 289.5-10 chr10 14723053 14723190 + 2.5 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 51776 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 435-41 chr9 31537625 31537810 + 2.5 NA Intergenic MIRc|SINE|MIR -156227 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 484-34 chr9 18020307 18020650 + 2.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 441412 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 498-14 chr2 75858324 75858855 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR -147674 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 501-9 chr16 63088706 63089074 + 2.5 NA Intergenic L1P4|LINE|L1 -1052452 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 235-30 chr5 18611765 18611944 + 2.5 NA Intergenic Intergenic 804580 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 478-8 chr13 76316127 76316390 + 2.5 NA Intergenic Intergenic -381126 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 392-7 chr11 30270441 30270734 + 2.5 NA Intergenic Intergenic 39573 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 378-14 chr2 126476163 126476424 + 2.5 NA Intergenic L1MEg|LINE|L1 -179642 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 284.5-6 chr1 236313374 236313590 + 2.5 NA Intergenic Intergenic -31524 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 438-28 chr7 124005683 124005999 + 2.5 NA intron (NR_133947, intron 3 of 4) MIRc|SINE|MIR 11219 NR_133947 105375483 Hs.435972 NR_133947 ENSG00000241345 LOC105375483 - uncharacterized LOC105375483 ncRNA 432-13 chr19 27732978 27733205 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -60340 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 655.5-12 chr7 38098017 38098355 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR -80059 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 339-38 chr8 79541465 79541699 + 2.5 NA Intergenic FLAM_C|SINE|Alu -69535 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 551-2 chr1 116988006 116988569 + 2.5 NA 3' UTR (NM_020440, exon 9 of 9) 3' UTR (NM_020440, exon 9 of 9) -13463 NM_001256109 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 496-2 chr1 98567198 98567426 + 2.5 NA Intergenic MIRb|SINE|MIR -94409 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 371.5-5 chr11 59744140 59744387 + 2.5 NA Intergenic AluSx1|SINE|Alu -4549 NR_045005 81343 Hs.741974 NR_045005 ENSG00000255538 OR10V2P - olfactory receptor family 10 subfamily V member 2 pseudogene pseudo 286-30 chr6 162947135 162947251 + 2.5 NA intron (NM_001080379, intron 2 of 4) L1MA4|LINE|L1 106968 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 329-3 chr10 123274034 123274347 + 2.5 NA Intergenic Intergenic 119788 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 310.5-9 chr11 115357656 115357804 + 2.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 24153 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 452.5-14 chr4 1006570 1006866 + 2.5 NA Intergenic AluSx|SINE|Alu -4908 NM_001004356 53834 Hs.193326 NM_021923 ENSG00000127418 FGFRL1 FGFR-5|FGFR5|FHFR fibroblast growth factor receptor like 1 protein-coding 521.5-4 chr3 89042548 89042861 + 2.5 NA Intergenic LFSINE_Vert|SINE|tRNA -64917 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 451-24 chr8 26329400 26329646 + 2.5 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 36307 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 371-32 chr8 120553813 120554082 + 2.5 NA intron (NM_021021, intron 4 of 6) AluSx|SINE|Alu 108528 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 591.5-4 chr14 59705347 59705729 + 2.5 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -58518 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 376-12 chr17 51415524 51415838 + 2.5 NA Intergenic AluSz|SINE|Alu -19746 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 373.5-3 chr10 61115509 61115763 + 2.5 NA Intergenic Intergenic 99361 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 531.5-15 chr8 115455314 115455772 + 2.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 212470 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 597.5-3 chr2 2406721 2407242 + 2.5 NA Intergenic HAL1|LINE|L1 -75706 NM_001329851 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 299-4 chr1 218523543 218523777 + 2.5 NA intron (NR_146760, intron 2 of 2) intron (NR_146760, intron 2 of 2) 13565 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 641-3 chr2 130728051 130728412 + 2.5 NA promoter-TSS (NM_207364) promoter-TSS (NM_207364) -839 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 449-23 chr4 75968458 75968693 + 2.5 NA intron (NM_001288984, intron 11 of 21) intron (NM_001288984, intron 11 of 21) -12215 NR_125906 101928809 Hs.637575 NR_125906 ENSG00000245928 LOC101928809 - uncharacterized LOC101928809 ncRNA 277.5-4 chr1 158782775 158782952 + 2.5 NA Intergenic MER90a|LTR|ERV1 -5228 NM_001005278 81442 Hs.554487 NM_001005278 ENSG00000188340 OR6N2 OR1-23 olfactory receptor family 6 subfamily N member 2 protein-coding 320-24 chr6 37405586 37405766 + 2.5 NA Intergenic L1MC4|LINE|L1 -27545 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 398-19 chr2 208734018 208734271 + 2.5 NA intron (NR_136588, intron 3 of 5) L1PA16|LINE|L1 191502 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 516.5 chr1 73453247 73453593 + 2.5 NA Intergenic MSTD|LTR|ERVL-MaLR 147250 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 813-7 chr6 99219103 99219531 + 2.5 NA Intergenic Intergenic 94708 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 465.5-17 chr4 182315892 182316398 + 2.5 NA intron (NM_001080477, intron 1 of 27) L1MEc|LINE|L1 72743 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 465.5-18 chr5 94247075 94247409 + 2.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -135543 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 489-4 chr10 60666454 60666681 + 2.5 NA intron (NM_001204403, intron 1 of 43) L1MB2|LINE|L1 66961 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 517.5-3 chr1 166396959 166397305 + 2.5 NA Intergenic Intergenic 92907 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 319-9 chr14 63089484 63089641 + 2.5 NA Intergenic L1ME4a|LINE|L1 -44104 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 770 chr10 11822626 11823056 + 2.5 NA promoter-TSS (NM_153256) promoter-TSS (NM_153256) -515 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 540-17 chr3 29899821 29900081 + 2.5 NA intron (NM_001003793, intron 10 of 14) intron (NM_001003793, intron 10 of 14) 34205 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 560-17 chr6 46522736 46523303 + 2.5 NA intron (NR_125837, intron 1 of 2) L1PA13|LINE|L1 -30952 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 863 chr1 35290148 35290516 + 2.5 NA intron (NM_005095, intron 1 of 29) intron (NM_005095, intron 1 of 29) 21623 NM_001350138 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 631-2 chr1 209713206 209713636 + 2.5 NA intron (NM_181755, intron 5 of 6) L1ME4a|LINE|L1 8575 NM_005525 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 325.5-21 chr21 29703021 29703264 + 2.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -45033 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 336-27 chr18 58835632 58835814 + 2.5 NA Intergenic AluSx3|SINE|Alu 21843 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 812.5-2 chr16 54190753 54191160 + 2.5 NA Intergenic Intergenic 79923 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 279-37 chr9 83611849 83612062 + 2.5 NA Intergenic L1ME3D|LINE|L1 -11094 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 740.5-3 chr16 67514028 67514358 + 2.5 NA Intergenic AluJo|SINE|Alu 14552 NR_104656 100505942 Hs.121233 NR_104656 LOC100505942 - uncharacterized LOC100505942 ncRNA 382.5-19 chr6 131178503 131178834 + 2.5 NA intron (NM_016377, intron 5 of 7) intron (NM_016377, intron 5 of 7) 43201 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 319-38 chr8 82750236 82750385 + 2.5 NA Intergenic Intergenic -161794 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 323-10 chr15 94461760 94462002 + 2.5 NA intron (NM_018349, intron 19 of 21) intron (NM_018349, intron 19 of 21) 105951 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 321.5-11 chr11 65203669 65203877 + 2.5 NA intron (NR_040008, intron 9 of 20) L1MB7|LINE|L1 -10067 NR_033396 440044 Hs.532372 NM_001004326 ENSG00000197847 SLC22A20P Oat6|SLC22A20 solute carrier family 22 member 20, pseudogene pseudo 341-30 chr6 40219727 40219887 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 136199 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 518.5-19 chr7 55982370 55982646 + 2.5 NA intron (NM_001483, intron 5 of 9) AluY|SINE|Alu 17923 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 334-26 chr6 37128368 37128601 + 2.5 NA Intergenic Intergenic -41668 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 543-18 chr8 114620820 114621108 + 2.5 NA Intergenic L1PA13|LINE|L1 1047049 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 635.5-5 chr16 72988296 72988736 + 2.5 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 59612 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 441-8 chr11 114040322 114040601 + 2.5 NA Intergenic MIRb|SINE|MIR -19250 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 418-19 chr4 60624468 60624646 + 2.5 NA Intergenic Intergenic -298062 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1109.5 chr6 118923332 118924279 + 2.5 NA intron (NM_153255, intron 3 of 6) intron (NM_153255, intron 3 of 6) 7933 NM_017696 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 311.5-45 chr9 114463960 114464192 + 2.5 NA intron (NM_001083885, intron 3 of 11) L1MA2|LINE|L1 -37908 NM_001346890 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 515-20 chr9 88103548 88103821 + 2.5 NA Intergenic AluSx|SINE|Alu -25784 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 318-23 chr2 178083943 178084222 + 2.5 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) -11305 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 496-10 chr19 28835759 28836258 + 2.5 NA Intergenic LTR16A2|LTR|ERVL -108314 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 687-3 chr11 94018272 94018678 + 2.5 NA Intergenic Intergenic -2879 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 634.5-12 chr5 133912682 133912994 + 2.5 NA promoter-TSS (NR_131252) promoter-TSS (NR_131252) -839 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 366.5-16 chr17 79779525 79779837 + 2.5 NA intron (NM_032647, intron 3 of 3) intron (NM_032647, intron 3 of 3) 1503 NM_032647 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 440 chr1 48816807 48817138 + 2.5 NA intron (NR_136623, intron 5 of 12) L2c|LINE|L2 -40003 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 510.5-8 chr21 24299174 24299550 + 2.5 NA Intergenic MER20|DNA|hAT-Charlie 22015 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 447.5-17 chr4 48294301 48294618 + 2.5 NA Intergenic LTR16E1|LTR|ERVL -24621 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 657.5-4 chr16 19021872 19022248 + 2.5 NA intron (NM_001300732, intron 4 of 14) MLT1I|LTR|ERVL-MaLR 37773 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 206.5-12 chr13 108242560 108242710 + 2.5 NA Intergenic Intergenic 24243 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 458-12 chr15 68886701 68887002 + 2.5 NA Intergenic AluJb|SINE|Alu -43649 NR_033671 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 386.5-23 chr6 9657120 9657329 + 2.5 NA Intergenic Intergenic -747278 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 438.5-4 chr17 69100656 69100904 + 2.5 NA intron (NM_080284, intron 22 of 38) intron (NM_080284, intron 22 of 38) -1148 NR_039750 100616316 NR_039750 ENSG00000283385 MIR4524A MIR4524|hsa-mir-4524a|mir-4524a microRNA 4524a ncRNA 339.5-11 chr16 77074727 77075109 + 2.5 NA Intergenic L1MD2|LINE|L1 -116272 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 798.5 chr8 113297989 113298392 + 2.5 NA intron (NM_001363185, intron 2 of 66) intron (NM_001363185, intron 2 of 66) 78962 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 527-10 chr15 57283458 57283740 + 2.5 NA intron (NM_001322157, intron 19 of 19) intron (NM_001322157, intron 19 of 19) -4942 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 231-24 chr6 148299006 148299199 + 2.5 NA intron (NM_001346505, intron 1 of 19) L2a|LINE|L2 26774 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 295.5-11 chr19 36493559 36493760 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 4032 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 590.5-14 chr5 44413611 44414059 + 2.5 NA non-coding (NR_108034, exon 3 of 3) non-coding (NR_108034, exon 3 of 3) -24415 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 357.5-15 chr5 13172827 13173044 + 2.5 NA Intergenic L1MA9|LINE|L1 -140049 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 491-13 chr3 17171732 17172071 + 2.5 NA intron (NM_014744, intron 19 of 21) intron (NM_014744, intron 19 of 21) 238705 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 320.5-30 chr6 125014514 125014751 + 2.5 NA intron (NM_152553, intron 3 of 8) L4_C_Mam|LINE|RTE-X 31264 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 281-15 chr14 20978522 20978685 + 2.5 NA Intergenic Intergenic -11377 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 394-29 chr8 134406358 134406567 + 2.5 NA Intergenic L1MA9|LINE|L1 -191609 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 523.5-11 chr3 72142791 72143293 + 2.5 NA Intergenic Intergenic -8215 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 559.5-7 chr16 48801306 48801908 + 2.5 NA Intergenic L2a|LINE|L2 -191427 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 802-2 chr14 73952588 73953095 + 2.5 NA intron (NM_182476, intron 1 of 11) AluSq|SINE|Alu 2539 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 555-20 chr5 52513674 52514017 + 2.5 NA Intergenic L1MB1|LINE|L1 -274071 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 293-9 chr14 47190517 47190750 + 2.5 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 152613 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 479-16 chr21 32408462 32408919 + 2.5 NA Intergenic Intergenic -3033 NM_001320745 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 479-21 chr6 119121234 119121557 + 2.5 NA intron (NM_001288576, intron 1 of 15) AluJb|SINE|Alu 27798 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 376-32 chr9 131335365 131335611 + 2.5 NA Intergenic AluJo|SINE|Alu 45765 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 326.5-10 chr12 77854049 77854216 + 2.5 NA intron (NM_001024383, intron 1 of 39) L3|LINE|CR1 23238 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 636-18 chr5 22576322 22576743 + 2.5 NA intron (NM_004061, intron 1 of 14) L2c|LINE|L2 276812 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 374-13 chr18 73307345 73307626 + 2.5 NA Intergenic Intergenic -17456 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 535.5 chr1 224917394 224917774 + 2.5 NA Intergenic MER77B|LTR|ERVL -12070 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 655-10 chr22 32540341 32540751 + 2.5 NA intron (NM_003490, intron 8 of 13) intron (NM_003490, intron 8 of 13) 65309 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 252-24 chr6 19136391 19136560 + 2.5 NA intron (NR_110860, intron 5 of 10) L1ME3A|LINE|L1 44005 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 306.5-4 chr1 160368736 160368911 + 2.5 NA intron (NM_005598, intron 1 of 1) intron (NM_005598, intron 1 of 1) 1752 NM_005598 4807 Hs.30956 NM_005598 ENSG00000171786 NHLH1 HEN1|NSCL|NSCL1|bHLHa35 nescient helix-loop-helix 1 protein-coding 754-6 chr5 145922100 145922469 + 2.5 NA Intergenic L2c|LINE|L2 -14294 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 557-4 chr11 79831205 79831470 + 2.5 NA Intergenic L2c|LINE|L2 -390307 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 683.5-3 chr2 215580914 215581349 + 2.5 NA Intergenic AluSx|SINE|Alu 127424 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 414.5-8 chr14 66180176 66180432 + 2.5 NA Intergenic L2c|LINE|L2 -306067 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 300.5-9 chr10 114915938 114916150 + 2.5 NA Intergenic Intergenic -22151 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 503-28 chr6 161907615 161907836 + 2.5 NA intron (NM_004562, intron 6 of 11) Charlie25|DNA|hAT-Charlie 436748 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 627.5-10 chr7 6133727 6134053 + 2.5 NA intron (NM_032172, intron 3 of 17) AluY|SINE|Alu 28941 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 374.5-13 chr17 42681987 42682201 + 2.5 NA promoter-TSS (NM_016602) promoter-TSS (NM_016602) -251 NM_016602 2826 Hs.744542 NM_016602 ENSG00000184451 CCR10 GPR2 C-C motif chemokine receptor 10 protein-coding 294-8 chr10 37867007 37867124 + 2.5 NA Intergenic Intergenic -8962 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 489-23 chr5 31973618 31974035 + 2.5 NA intron (NM_178140, intron 2 of 24) AluJb|SINE|Alu -37667 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 416-23 chr6 70300056 70300306 + 2.5 NA intron (NM_001851, intron 3 of 37) intron (NM_001851, intron 3 of 37) 2903 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 499-23 chr7 115224231 115224508 + 2.5 NA intron (NR_126407, intron 1 of 4) intron (NR_126407, intron 1 of 4) 6986 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 530.5-16 chr9 72418536 72418838 + 2.5 NA Intergenic Intergenic -53479 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 464-22 chr6 119328592 119328914 + 2.5 NA intron (NM_005907, intron 2 of 12) intron (NM_005907, intron 2 of 12) 21008 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 552.5-17 chr5 34493647 34494003 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -162503 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 361-21 chr2 120799569 120799829 + 2.5 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 7418 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 352.5-34 chr9 86826528 86826709 + 2.5 NA Intergenic Intergenic 120888 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 362.5-24 chr4 138421332 138421517 + 2.5 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 111713 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 481-8 chr18 71889233 71889590 + 2.5 NA Intergenic AluSz6|SINE|Alu -107185 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 543.5 chr1 80238231 80238505 + 2.5 NA Intergenic Intergenic -297387 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 337.5-3 chr11 82309941 82310141 + 2.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 93872 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 370.5-17 chr3 16168125 16168547 + 2.5 NA Intergenic LTR16C|LTR|ERVL -6344 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 407.5-16 chr4 55161336 55161559 + 2.5 NA Intergenic Intergenic -35852 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 251-20 chr22 25188909 25189082 + 2.5 NA intron (NM_001145206, intron 9 of 10) MLT2D|LTR|ERVL -10863 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 479-15 chr20 48752171 48752427 + 2.5 NA intron (NM_020820, intron 1 of 39) L1ME3C|LINE|L1 75700 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 415.5-4 chr12 88473638 88473988 + 2.5 NA Intergenic Intergenic 106658 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 456-11 chr15 48812428 48812630 + 2.5 NA Intergenic Intergenic -1460 NM_001194998 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 624-3 chr19 31524394 31524680 + 2.5 NA Intergenic L1MD3|LINE|L1 -63652 NM_001278576 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 320-20 chr4 7099868 7100154 + 2.5 NA intron (NR_027441, intron 1 of 1) L1MB7|LINE|L1 3365 NR_027441 730971 Hs.591718 NR_027441 LINC02447 - long intergenic non-protein coding RNA 2447 ncRNA 439.5-14 chr2 4609227 4609601 + 2.5 NA Intergenic Intergenic 46808 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 499.5-11 chr21 25609017 25609389 + 2.5 NA Intergenic Intergenic -1714 NM_017446 54148 Hs.420696 NM_017446 ENSG00000154719 MRPL39 C21orf92|L39mt|MRP-L5|MRPL5|MSTP003|PRED22|PRED66|RPML5 mitochondrial ribosomal protein L39 protein-coding 570.5-10 chr8 26941244 26941565 + 2.5 NA Intergenic L1MB8|LINE|L1 -74126 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 409-31 chr7 155553705 155554166 + 2.5 NA intron (NM_001369813, intron 1 of 4) intron (NM_001369813, intron 1 of 4) 16811 NM_001369813 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 370-30 chr6 158562930 158563202 + 2.5 NA intron (NM_020823, intron 1 of 16) MIR|SINE|MIR 26630 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 603.5-4 chr2 82935969 82936358 + 2.5 NA Intergenic L1ME2|LINE|L1 79360 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 577-11 chr7 110074866 110075223 + 2.5 NA Intergenic L2a|LINE|L2 -114831 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 763.5 chr1 32031563 32031937 + 2.5 NA intron (NR_073498, intron 3 of 8) intron (NR_073498, intron 3 of 8) 17882 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 414.5-24 chr7 115798019 115798214 + 2.5 NA Intergenic Intergenic 170197 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 597-27 chr9 101413523 101413840 + 2.5 NA Intergenic L2|LINE|L2 14827 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 505-26 chr9 73494669 73494959 + 2.5 NA Intergenic Intergenic 342949 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 440-24 chr3 38014788 38015143 + 2.5 NA intron (NM_006225, intron 3 of 14) L1MB8|LINE|L1 9555 NM_001130964 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 330-33 chr4 34409206 34409517 + 2.5 NA Intergenic L1PA14|LINE|L1 -139614 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 507.5-14 chr8 25180559 25180987 + 2.5 NA Intergenic Intergenic -3916 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 543-3 chr14 56356384 56356754 + 2.5 NA Intergenic Intergenic -157762 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 298.5-9 chr14 30542237 30542447 + 2.5 NA intron (NR_151720, intron 3 of 3) L1MB5|LINE|L1 -16781 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 754-4 chr15 89878902 89879246 + 2.5 NA intron (NR_023361, intron 3 of 6) AluJo|SINE|Alu 4956 NR_049807 100846993 NR_049807 ENSG00000264796 MIR5009 - microRNA 5009 ncRNA 732-7 chr21 33219923 33220337 + 2.5 NA Intergenic L1MC4|LINE|L1 -9765 NM_207585 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 347.5-19 chr20 8077219 8077407 + 2.5 NA Intergenic Intergenic -54953 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 465-28 chr3 22666871 22667178 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 535554 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 826.5-2 chr17 61231422 61231868 + 2.5 NA intron (NM_001330413, intron 23 of 25) AluJr|SINE|Alu 136059 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 295.5-18 chr20 36757066 36757271 + 2.5 NA intron (NM_001145317, intron 7 of 9) AluSz6|SINE|Alu -11078 NM_032013 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 412.5-6 chr12 8815960 8816336 + 2.5 NA Intergenic L1MCc|LINE|L1 -6473 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 592.5-9 chr20 48143452 48143712 + 2.5 NA Intergenic Intergenic -153465 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 449.5-17 chr8 124488864 124489185 + 2.5 NA TTS (NM_007218) TTS (NM_007218) 14257 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 624-8 chr5 111235932 111236260 + 2.5 NA intron (NM_001744, intron 1 of 10) MIR|SINE|MIR 11712 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 586.5-19 chr9 27906670 27906963 + 2.5 NA Intergenic Intergenic -332950 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 381-24 chr5 153759099 153759302 + 2.5 NA intron (NM_000827, intron 11 of 15) L1MA6|LINE|L1 139787 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 360-25 chr20 4092486 4092640 + 2.5 NA Intergenic Intergenic -56216 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 479-24 chr8 116441104 116441331 + 2.5 NA Intergenic MIRc|SINE|MIR -116158 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 337-28 chr7 3894234 3894368 + 2.5 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -235384 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 621.5-9 chr8 131951279 131951603 + 2.5 NA intron (NR_136616, intron 5 of 23) intron (NR_136616, intron 5 of 23) 34668 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 460-25 chr9 110660983 110661292 + 2.5 NA Intergenic L2c|LINE|L2 -7654 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 401.5-31 chr7 86944908 86945222 + 2.5 NA intron (NM_001291991, intron 1 of 20) intron (NM_001291991, intron 1 of 20) 20834 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 446-27 chr5 8128733 8129117 + 2.5 NA Intergenic Intergenic 259777 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 273-24 chr3 55582137 55582337 + 2.5 NA intron (NM_015576, intron 16 of 16) L2c|LINE|L2 77232 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 707-6 chr2 19936630 19936983 + 2.5 NA intron (NM_001006657, intron 20 of 27) MLT1A1|LTR|ERVL-MaLR -34823 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 207-27 chr7 106807451 106807578 + 2.5 NA Intergenic Intergenic -57768 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 328.5-10 chr12 68789369 68789515 + 2.5 NA Intergenic AluSx|SINE|Alu 16052 NR_073494 100130075 Hs.744781 NR_073494 LOC100130075 - SUZ RNA binding domain containing 1 pseudogene pseudo 262.5-15 chr3 63957468 63957696 + 2.5 NA intron (NM_001177387, intron 4 of 12) MER113|DNA|hAT-Charlie -10212 NM_001128149 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 1130.5 chr3 103790111 103790636 + 2.5 NA Intergenic L1MD|LINE|L1 -266257 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 295-48 chrX 101937200 101937331 + 2.5 NA Intergenic Intergenic -5238 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 569.5-8 chr2 78870064 78870327 + 2.5 NA Intergenic Intergenic -155507 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 404-11 chr11 93983265 93983526 + 2.5 NA Intergenic LTR33A|LTR|ERVL -37959 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 361-19 chr2 30822676 30822890 + 2.5 NA Intergenic Intergenic -15337 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 776 chr17 58639747 58640166 + 2.5 NA intron (NM_031272, intron 2 of 31) intron (NM_031272, intron 2 of 31) 52099 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 308-17 chr2 49775210 49775439 + 2.5 NA Intergenic Intergenic 198879 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 268-23 chr6 116525039 116525165 + 2.5 NA TTS (NM_153711) TTS (NM_153711) -3941 NM_153036 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 315.5-33 chr6 21209995 21210217 + 2.5 NA intron (NM_017774, intron 15 of 15) MER94|DNA|hAT-Blackjack 301786 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 283.5-12 chr12 94178488 94178644 + 2.5 NA intron (NM_005761, intron 2 of 30) intron (NM_005761, intron 2 of 30) 29989 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 426.5-25 chr7 131779015 131779207 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie -131109 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 381-22 chr5 88948877 88949068 + 2.5 NA intron (NR_136220, intron 3 of 7) intron (NR_136220, intron 3 of 7) -44867 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 337-10 chr14 74685939 74686258 + 2.5 NA intron (NM_001039479, intron 2 of 19) intron (NM_001039479, intron 2 of 19) 26982 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 606.5-6 chr5 112084253 112084602 + 2.5 NA Intergenic Intergenic -76099 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 613.5-9 chr4 42371726 42372106 + 2.5 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 19352 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 483.5-8 chr20 38497298 38497647 + 2.5 NA exon (NM_001282918, exon 4 of 30) exon (NM_001282918, exon 4 of 30) -19091 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 206.5 chr1 22658184 22658298 + 2.5 NA intron (NM_001371184, intron 2 of 3) L2a|LINE|L2 5005 NM_001371184 348 chr1 58774862 58775104 + 2.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 9064 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 539-14 chr4 119156309 119156580 + 2.5 NA intron (NM_016599, intron 3 of 5) intron (NM_016599, intron 3 of 5) 20660 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 408.5-22 chr7 79309123 79309416 + 2.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -143688 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 338.5-36 chr8 86283130 86283324 + 2.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -52846 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 388.5-20 chr5 129483674 129483899 + 2.5 NA intron (NM_133638, intron 2 of 22) L1ME4b|LINE|L1 -23097 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 561-26 chr8 140821340 140821758 + 2.5 NA intron (NR_148037, intron 9 of 34) L2|LINE|L2 -88896 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 369-18 chr13 22009855 22010128 + 2.5 NA Intergenic Intergenic -131831 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 299.5-18 chr2 114021937 114022105 + 2.5 NA intron (NR_148509, intron 1 of 1) L1ME4b|LINE|L1 -42037 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 543.5-17 chr6 105607395 105607690 + 2.5 NA Intergenic Intergenic -204460 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 476-25 chr4 101715668 101715943 + 2.5 NA Intergenic L1MA5|LINE|L1 -74802 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 376-18 chr20 41453363 41453629 + 2.5 NA intron (NM_032221, intron 20 of 36) intron (NM_032221, intron 20 of 36) -86678 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 804-9 chr7 31279451 31279970 + 2.5 NA Intergenic Intergenic 61016 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 335-4 chr10 28363393 28363713 + 2.5 NA Intergenic Intergenic -60489 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 358.5-28 chr8 3058509 3058755 + 2.5 NA intron (NM_033225, intron 49 of 69) MER5A1|DNA|hAT-Charlie -330181 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 344-23 chr2 56744338 56744516 + 2.5 NA Intergenic Intergenic -558657 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 323.5-19 chr20 19569842 19570061 + 2.5 NA intron (NM_020689, intron 3 of 16) LTR33|LTR|ERVL -285355 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 402-16 chr18 58776912 58777204 + 2.5 NA Intergenic LTR16C|LTR|ERVL -36822 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 559.5-8 chr16 71957565 71957922 + 2.5 NA intron (NM_181536, intron 16 of 29) AluSz|SINE|Alu 42235 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 587.5-3 chr10 51552558 51552886 + 2.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 146873 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 869.5-7 chr6 93562971 93563503 + 2.5 NA Intergenic Intergenic -140780 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 367.5-17 chr20 36065908 36066154 + 2.5 NA Intergenic Intergenic -15071 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 535-16 chr4 149383090 149383493 + 2.5 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 228996 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 397-14 chr16 56862265 56862474 + 2.5 NA Intergenic Intergenic -2838 NM_001126108 6559 Hs.669115 NM_000339 ENSG00000070915 SLC12A3 NCC|NCCT|TSC solute carrier family 12 member 3 protein-coding 297-24 chr3 107234550 107234711 + 2.5 NA intron (NR_028303, intron 1 of 3) THE1B|LTR|ERVL-MaLR 6008 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 365-3 chr10 110797311 110797591 + 2.5 NA intron (NM_001134363, intron 5 of 13) intron (NM_001134363, intron 5 of 13) 73453 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 465-21 chr17 60127882 60128216 + 2.5 NA Intergenic AluJb|SINE|Alu -21924 NR_137422 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 467.5-2 chr10 54852195 54852467 + 2.5 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -51040 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 403-39 chr8 141916043 141916335 + 2.5 NA Intergenic L1ME3D|LINE|L1 -129876 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 591.5 chr10 31279897 31280155 + 2.5 NA Intergenic L1MEg|LINE|L1 -38391 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 476-27 chr5 4612132 4612380 + 2.5 NA Intergenic Intergenic -161225 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 306-11 chr18 3730960 3731163 + 2.5 NA intron (NM_001242762, intron 3 of 9) L1MC4|LINE|L1 114297 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 737-5 chr12 127117784 127118332 + 2.5 NA Intergenic Intergenic -57661 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 380.5-17 chr20 41523037 41523222 + 2.5 NA intron (NM_032221, intron 3 of 36) intron (NM_032221, intron 3 of 36) 95248 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 660-5 chr14 45409040 45409473 + 2.5 NA Intergenic L1PB4|LINE|L1 -156054 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 433.5-26 chr5 103230344 103230652 + 2.5 NA Intergenic L1PA17|LINE|L1 -28265 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 636.5 chr1 112886039 112886353 + 2.5 NA Intergenic AluSz|SINE|Alu 4146 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 220-29 chr7 11243780 11243971 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 270003 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 715.5-8 chr4 75781347 75781686 + 2.5 NA intron (NM_003715, intron 8 of 23) Tigger1|DNA|TcMar-Tigger 56994 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 374-9 chr15 65690184 65690339 + 2.5 NA intron (NM_005848, intron 22 of 31) intron (NM_005848, intron 22 of 31) 6675 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 181-11 chr3 180297088 180297161 + 2.5 NA Intergenic MIRb|SINE|MIR -117049 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 413-31 chr3 186291541 186291982 + 2.5 NA intron (NM_001346, intron 5 of 24) L1ME1|LINE|L1 70473 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 294.5-10 chr12 7588915 7589120 + 2.5 NA Intergenic HERVP71A-int|LTR|ERV1 76891 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 238-11 chr11 80436797 80436926 + 2.5 NA Intergenic MIRb|SINE|MIR 325942 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 871.5 chr2 203678968 203679520 + 2.5 NA Intergenic Intergenic -27231 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 298-20 chr5 319031 319198 + 2.5 NA intron (NM_020731, intron 1 of 11) intron (NM_020731, intron 1 of 11) 14938 NM_020731 57491 Hs.50823 NM_020731 ENSG00000286169 AHRR AHH|AHHR|bHLHe77 aryl-hydrocarbon receptor repressor protein-coding 215-12 chr14 68134399 68134529 + 2.5 NA intron (NM_133509, intron 7 of 10) L1MD2|LINE|L1 310872 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 498.5-17 chr6 155616837 155617132 + 2.5 NA Intergenic L1ME3D|LINE|L1 102140 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 289.5-32 chr5 52938337 52938514 + 2.5 NA intron (NM_181501, intron 24 of 28) intron (NM_181501, intron 24 of 28) -50927 NR_073103 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 296.5-14 chr2 102920187 102920339 + 2.5 NA Intergenic Intergenic -24541 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 583-9 chr4 11476779 11477169 + 2.5 NA Intergenic L1PA14|LINE|L1 -48080 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 231.5-13 chr2 48337703 48337878 + 2.5 NA intron (NM_002158, intron 2 of 6) L1ME3E|LINE|L1 23108 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 788-7 chr4 106231841 106232191 + 2.5 NA intron (NM_001290768, intron 18 of 26) intron (NM_001290768, intron 18 of 26) -83594 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 339.5-26 chr6 147142700 147143001 + 2.5 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -16075 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 639.5-3 chr2 40310854 40311472 + 2.5 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 119141 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 300.5-31 chr3 144621986 144622176 + 2.5 NA Intergenic Intergenic 649000 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 757.5-4 chr9 136684910 136685431 + 2.5 NA intron (NM_006412, intron 1 of 5) intron (NM_006412, intron 1 of 5) 2287 NM_006412 10555 Hs.320151 NM_006412 ENSG00000169692 AGPAT2 1-AGPAT2|BSCL|BSCL1|LPAAB|LPAAT-beta 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding 772-9 chr5 24192888 24193445 + 2.5 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 241818 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 505.5-24 chr8 121768017 121768407 + 2.5 NA Intergenic Intergenic -126772 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 436-2 chr1 62585744 62585983 + 2.5 NA intron (NM_001272002, intron 15 of 15) MER5B|DNA|hAT-Charlie -11657 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 526.5-14 chr5 11450212 11450473 + 2.5 NA intron (NM_001288715, intron 2 of 20) MamGypsy2-I|LTR|Gypsy 138575 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 349.5-25 chr5 161032336 161032637 + 2.5 NA Intergenic Intergenic -93860 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 393-24 chr22 23703821 23704040 + 2.5 NA intron (NR_024448, intron 6 of 11) L1PA16|LINE|L1 7514 NM_001329425 266747 Hs.658997 NM_153615 ENSG00000159496 RGL4 Rgr ral guanine nucleotide dissociation stimulator like 4 protein-coding 513-28 chr7 30606504 30606728 + 2.5 NA intron (NM_002047, intron 6 of 16) L1MC5|LINE|L1 11738 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 594-6 chr17 59609139 59609476 + 2.5 NA TTS (NM_001166301) TTS (NM_001166301) -10382 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 1068.5 chr1 103409605 103410318 + 2.5 NA Intergenic Intergenic 115550 NM_001347930 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 570-18 chr4 75950926 75951342 + 2.5 NA intron (NM_001288984, intron 21 of 21) intron (NM_001288984, intron 21 of 21) -10121 NM_014435 27163 Hs.437365 NM_014435 ENSG00000138744 NAAA ASAHL|PLT N-acylethanolamine acid amidase protein-coding 308.5-8 chr14 23089287 23089475 + 2.5 NA intron (NM_001164815, intron 3 of 17) intron (NM_001164815, intron 3 of 17) -6124 NM_017924 55017 Hs.525238 NM_017924 ENSG00000179933 C14orf119 - chromosome 14 open reading frame 119 protein-coding 582-15 chr22 27903927 27904281 + 2.5 NA intron (NM_001284278, intron 3 of 11) L1MB7|LINE|L1 15110 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 818-3 chr8 48718096 48718604 + 2.5 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 16918 NM_001363974 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 384 chr1 180722434 180722650 + 2.5 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) 90520 NM_001135669 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 343-25 chr5 11238952 11239126 + 2.5 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 349878 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 368.5-9 chr10 80712596 80712818 + 2.5 NA Intergenic Intergenic 62910 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 933-2 chr22 30382296 30382874 + 2.5 NA intron (NM_001017981, intron 5 of 8) intron (NM_001017981, intron 5 of 8) -4680 NR_046312 85371 Hs.505597 NR_046312 KIAA1656 - KIAA1656 protein ncRNA 439.5-20 chr4 30843379 30843705 + 2.5 NA intron (NM_032457, intron 1 of 2) MamRTE1|LINE|RTE-BovB 123173 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 350.5-19 chr9 120658414 120658572 + 2.5 NA intron (NM_001080497, intron 2 of 5) MIRb|SINE|MIR 55977 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 536.5-3 chr1 176540045 176540341 + 2.5 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 77018 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 442.5-13 chr2 79627499 79627796 + 2.5 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 21712 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 549.5-5 chr15 56590580 56590871 + 2.5 NA Intergenic L1MA4A|LINE|L1 -125588 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 334-23 chr4 129813815 129814055 + 2.5 NA intron (NR_151713, intron 7 of 16) MSTB1|LTR|ERVL-MaLR 42316 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 363.5-28 chr6 166708501 166708736 + 2.5 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -81367 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 501-4 chr10 27777262 27777599 + 2.5 NA Intergenic MER2|DNA|TcMar-Tigger -31611 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 774.5 chr18 60513089 60513609 + 2.5 NA Intergenic L2a|LINE|L2 -140574 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 863.5 chr14 56739494 56739902 + 2.5 NA Intergenic MER125|DNA|DNA 65969 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 429-35 chr7 36025656 36025868 + 2.5 NA Intergenic L1M2|LINE|L1 -69548 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 249.5-16 chr2 152927403 152927511 + 2.5 NA Intergenic Intergenic 208820 NR_146429 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 484-3 chr1 39535826 39536102 + 2.5 NA intron (NR_144357, intron 8 of 11) AluSz6|SINE|Alu 21098 NR_132962 192217 Hs.472491 NR_132962 ENSG00000237624 OXCT2P1 OXCT2P 3-oxoacid CoA-transferase 2 pseudogene 1 pseudo 388-5 chr10 80652462 80652725 + 2.5 NA intron (NR_155749, intron 2 of 2) MER21C|LTR|ERVL 2796 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 610.5-17 chr8 25652569 25652954 + 2.5 NA Intergenic L1MA4A|LINE|L1 193528 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 846.5-4 chr7 7106937 7107587 + 2.5 NA Intergenic MER4-int|LTR|ERV1 -10476 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 371.5-13 chr18 51054309 51054611 + 2.5 NA intron (NM_005359, intron 4 of 11) intron (NM_005359, intron 4 of 11) 24247 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 294-16 chr16 53305690 53305925 + 2.5 NA intron (NM_001352127, intron 31 of 38) LTR87|LTR|ERVL? 65405 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 331-7 chr10 7002673 7002859 + 2.5 NA Intergenic LTR16A|LTR|ERVL 184018 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 534-10 chr13 58153837 58154166 + 2.5 NA Intergenic Intergenic -11826 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 514.5-22 chr8 121897574 121897898 + 2.5 NA Intergenic Intergenic -256296 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 611-10 chr4 78427734 78428166 + 2.5 NA intron (NM_001166133, intron 35 of 41) intron (NM_001166133, intron 35 of 41) -123820 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 381-33 chrX 94678028 94678257 + 2.5 NA Intergenic L1MC3|LINE|L1 385084 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 477.5-12 chr14 21576457 21576771 + 2.5 NA Intergenic Intergenic -5870 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 590-10 chr2 123708206 123708607 + 2.5 NA Intergenic MER74A|LTR|ERVL 316768 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 681-6 chr5 174972438 174972867 + 2.5 NA intron (NR_046113, intron 2 of 2) LTR33|LTR|ERVL 23079 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 534.5-4 chr2 6437448 6437869 + 2.5 NA Intergenic MIRb|SINE|MIR -62236 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 484 chr1 33939787 33940232 + 2.5 NA intron (NM_052896, intron 3 of 69) MLT1C|LTR|ERVL-MaLR 71053 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 630.5-7 chr22 24557989 24558284 + 2.5 NA intron (NR_103819, intron 2 of 2) intron (NR_103819, intron 2 of 2) 2137 NM_004175 6634 Hs.356549 NM_004175 ENSG00000100028 SNRPD3 SMD3|Sm-D3 small nuclear ribonucleoprotein D3 polypeptide protein-coding 317-6 chr10 59395620 59395843 + 2.5 NA Intergenic L1M4|LINE|L1 -32550 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 297-32 chr7 120341028 120341272 + 2.5 NA intron (NM_012281, intron 1 of 5) L2a|LINE|L2 67975 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 621.5-6 chr4 36079350 36079649 + 2.5 NA intron (NR_146894, intron 31 of 32) intron (NR_146894, intron 31 of 32) 164440 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 418-21 chr5 91940360 91940628 + 2.5 NA Intergenic Intergenic -557177 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 427.5-5 chr11 36459738 36460049 + 2.5 NA intron (NM_001160167, intron 8 of 8) intron (NM_001160167, intron 8 of 8) 50379 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 479.5-12 chr5 27839010 27839377 + 2.5 NA Intergenic Intergenic 366901 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 585-3 chr11 7236329 7236651 + 2.5 NA Intergenic Intergenic 1724 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 745-3 chr12 14070772 14071119 + 2.5 NA Intergenic Intergenic -90589 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 353-27 chr3 110952262 110952575 + 2.5 NA Intergenic L1M2|LINE|L1 117541 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 488-9 chr20 59867176 59867423 + 2.5 NA intron (NM_014258, intron 39 of 44) intron (NM_014258, intron 39 of 44) 66338 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 803-5 chr14 59004819 59005288 + 2.5 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 176765 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 412.5-3 chr10 97414210 97414461 + 2.5 NA Intergenic Intergenic 11722 NR_157582 644215 NR_157582 LOC644215 - uncharacterized LOC644215 ncRNA 429.5-17 chr4 187334512 187334747 + 2.5 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) -36019 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 813.5-5 chr4 30665453 30666138 + 2.5 NA Intergenic MIR|SINE|MIR -54574 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 204.5-26 chr4 57442974 57443072 + 2.5 NA intron (NR_125907, intron 4 of 5) intron (NR_125907, intron 4 of 5) 17151 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 368-21 chr20 38087330 38087573 + 2.5 NA intron (NM_021215, intron 6 of 6) intron (NM_021215, intron 6 of 6) 53705 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 307.5-3 chr1 173942817 173943083 + 2.5 NA intron (NM_001300852, intron 17 of 18) intron (NM_001300852, intron 17 of 18) -25572 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 572-8 chr2 181477201 181477660 + 2.5 NA intron (NM_000885, intron 4 of 27) L1MA9|LINE|L1 20044 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 522-2 chr1 198842537 198843061 + 2.5 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 16183 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 876 chr2 230242108 230242555 + 2.5 NA intron (NM_001278453, intron 4 of 23) intron (NM_001278453, intron 4 of 23) 16595 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 499-6 chr2 30590741 30591002 + 2.5 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 143625 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 282.5-26 chr6 34458727 34458934 + 2.5 NA Intergenic MER39|LTR|ERV1 -7246 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 227-28 chr3 99850805 99850915 + 2.5 NA exon (NM_182909, exon 5 of 6) exon (NM_182909, exon 5 of 6) 25313 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 285.5 chr1 13411943 13412166 + 2.5 NA intron (NM_001099852, intron 1 of 3) (ATTT)n|Simple_repeat|Simple_repeat 1604 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 509-22 chr8 118112840 118113101 + 2.5 NA Intergenic Intergenic -1151 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 654-2 chr1 182326570 182326980 + 2.5 NA Intergenic AluSx|SINE|Alu -12714 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 686-4 chr2 62484501 62484908 + 2.5 NA Intergenic Intergenic 21491 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 501-12 chr2 211377274 211377771 + 2.5 NA 3' UTR (NM_005235, exon 28 of 28) 3' UTR (NM_005235, exon 28 of 28) 759951 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 298.5-7 chr12 9068296 9068613 + 2.5 NA TTS (NR_026971) TTS (NR_026971) 3277 NR_026971 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 472.5-14 chr5 11831295 11831819 + 2.5 NA intron (NM_001288717, intron 1 of 20) AluY|SINE|Alu 72889 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 279-10 chr14 71751541 71751681 + 2.5 NA Intergenic AluJb|SINE|Alu 165313 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 123.5-9 chr20 16333081 16333150 + 2.5 NA intron (NM_024704, intron 24 of 25) L2a|LINE|L2 240333 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 836-3 chr15 84024635 84025067 + 2.5 NA intron (NM_207517, intron 26 of 29) intron (NM_207517, intron 26 of 29) -55336 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 334-10 chr14 50092475 50092622 + 2.5 NA intron (NR_131171, intron 1 of 8) intron (NR_131171, intron 1 of 8) 12495 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 598-9 chr5 99722663 99722944 + 2.5 NA Intergenic Intergenic 188813 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 608.5-7 chr8 27813464 27813746 + 2.5 NA intron (NM_001278945, intron 6 of 7) L1MA9|LINE|L1 24212 NM_001363040 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 452.5-20 chr8 43876646 43876945 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 584353 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 367.5-24 chr4 15938254 15938478 + 2.5 NA 5' UTR (NM_005130, exon 2 of 3) 5' UTR (NM_005130, exon 2 of 3) 374 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 444-17 chr20 59982571 59982920 + 2.5 NA intron (NM_177980, intron 4 of 17) L2b|LINE|L2 -13629 NM_021810 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 343-13 chr17 6284506 6284660 + 2.5 NA Intergenic Intergenic 150538 NM_001285402 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 508.5-2 chr11 68467920 68468128 + 2.5 NA intron (NM_001352362, intron 2 of 24) AluSz|SINE|Alu 7272 NM_001164161 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 400.5-9 chr18 1152004 1152211 + 2.5 NA Intergenic L1MA2|LINE|L1 207522 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 485.5-2 chr10 119161937 119162203 + 2.5 NA intron (NM_213649, intron 3 of 13) intron (NM_213649, intron 3 of 13) 3622 NR_110305 119559 Hs.655168 NM_178867 ENSG00000183605 SFXN4 BCRM1|COXPD18|SLC56A4 sideroflexin 4 protein-coding 431-13 chr19 30972940 30973173 + 2.5 NA Intergenic Intergenic -194454 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 247-3 chr10 88758211 88758313 + 2.5 NA Intergenic Intergenic -3144 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 263-18 chr4 65749623 65749849 + 2.5 NA Intergenic L1MA9|LINE|L1 -79241 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 471.5-16 chr8 140861210 140861558 + 2.5 NA intron (NR_148037, intron 6 of 34) intron (NR_148037, intron 6 of 34) -128731 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 763 chr5 46284652 46285332 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr -588612 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 379.5-19 chr5 41640019 41640258 + 2.5 NA Intergenic Intergenic -129537 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 345-25 chr2 190682251 190682533 + 2.5 NA intron (NM_001321315, intron 3 of 5) MIRb|SINE|MIR 23234 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 518-24 chr9 26943994 26944314 + 2.5 NA intron (NM_001321546, intron 1 of 12) MSTD|LTR|ERVL-MaLR -2836 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 240.5-23 chr6 53663029 53663200 + 2.5 NA intron (NM_001003760, intron 1 of 2) MIRb|SINE|MIR 2642 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 525.5-14 chr6 106536501 106536911 + 2.5 NA intron (NM_001371242, intron 8 of 21) intron (NM_001371242, intron 8 of 21) 24851 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 562-3 chr16 72288266 72288620 + 2.5 NA intron (NR_126330, intron 11 of 13) L1MEd|LINE|L1 -115993 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 224.5-24 chr4 84462146 84462326 + 2.5 NA Intergenic L1MEc|LINE|L1 35998 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 411-31 chr5 68052871 68053110 + 2.5 NA Intergenic L2a|LINE|L2 -136886 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 316.5-7 chr10 49177080 49177274 + 2.5 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 11214 NM_001288741 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 532-7 chr17 28930508 28930757 + 2.5 NA intron (NM_001033561, intron 2 of 14) intron (NM_001033561, intron 2 of 14) 4357 NR_110803 101927018 Hs.665702 NR_110803 ENSG00000265845 LOC101927018 - uncharacterized LOC101927018 ncRNA 1037 chr14 52517431 52518436 + 2.5 NA intron (NM_001160047, intron 7 of 20) L2a|LINE|L2 34572 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 396.5-16 chr2 68912890 68913137 + 2.5 NA Intergenic L2a|LINE|L2 39880 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 616-10 chr6 130918328 130918661 + 2.5 NA intron (NM_001350320, intron 2 of 15) intron (NM_001350320, intron 2 of 15) 51989 NM_001350302 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 283-21 chr2 105292502 105292630 + 2.5 NA intron (NM_001142621, intron 4 of 11) GA-rich|Low_complexity|Low_complexity 37090 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 324-29 chr3 178023240 178023463 + 2.5 NA Intergenic Intergenic 206486 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 243.5-18 chr2 172705563 172705721 + 2.5 NA Intergenic LTR106_Mam|LTR|LTR -30203 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 377-15 chr2 153225636 153225806 + 2.5 NA Intergenic L1MCa|LINE|L1 253041 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 612-10 chr5 87032025 87032468 + 2.5 NA Intergenic L1PBa|LINE|L1 82708 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 407-5 chr10 76057052 76057251 + 2.5 NA intron (NM_001305581, intron 4 of 6) intron (NM_001305581, intron 4 of 6) 274390 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 361.5-6 chr14 64490042 64490479 + 2.5 NA intron (NM_001354683, intron 2 of 3) intron (NM_001354683, intron 2 of 3) 7732 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 682.5-14 chr8 142145547 142145989 + 2.5 NA Intergenic Intergenic -30571 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 488.5-9 chr4 151381250 151381571 + 2.5 NA Intergenic L1PB4|LINE|L1 -27766 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 195-10 chr16 64992845 64992961 + 2.5 NA intron (NM_001330576, intron 4 of 11) intron (NM_001330576, intron 4 of 11) 129160 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 577-5 chr17 31755945 31756380 + 2.5 NA Intergenic AluSz|SINE|Alu 102800 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 395-19 chr3 174756564 174756897 + 2.5 NA Intergenic Intergenic -102604 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 596.5-7 chr5 15000092 15000425 + 2.5 NA Intergenic Intergenic -128480 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 470-22 chr21 26401980 26402178 + 2.5 NA intron (NR_135516, intron 1 of 3) intron (NR_135516, intron 1 of 3) -3864 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 428.5-13 chr17 30321366 30321753 + 2.5 NA intron (NM_206832, intron 4 of 6) L2a|LINE|L2 12498 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 457.5-23 chr5 124999614 124999804 + 2.5 NA Intergenic Intergenic -37122 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 439.5-10 chr12 3951808 3952164 + 2.5 NA Intergenic Intergenic -78538 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 634.5-4 chr15 81793731 81794399 + 2.5 NA Intergenic L2|LINE|L2 251953 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 422-10 chr14 51696865 51697046 + 2.5 NA intron (NM_001042481, intron 3 of 14) L1MA8|LINE|L1 -20328 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 284.5-18 chr15 93148269 93148469 + 2.5 NA Intergenic THE1B|LTR|ERVL-MaLR -57697 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 321-20 chr4 65469230 65469454 + 2.5 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 200146 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 429-16 chr2 10394094 10394383 + 2.5 NA intron (NM_001258359, intron 1 of 4) intron (NM_001258359, intron 1 of 4) 25474 NM_001258359 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 220.5-30 chr6 37963477 37963649 + 2.5 NA intron (NM_021943, intron 2 of 5) L1M1|LINE|L1 143836 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 445.5-10 chr2 130734144 130734450 + 2.5 NA Intergenic L1ME3E|LINE|L1 5227 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 324-41 chr8 107331204 107331471 + 2.5 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 5178 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 484.5-20 chr6 69943856 69944189 + 2.5 NA intron (NM_001858, intron 9 of 50) L2a|LINE|L2 77466 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 610.5-16 chr7 54806678 54807364 + 2.5 NA Intergenic Intergenic 47708 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 562.5-8 chr11 90352780 90353209 + 2.5 NA intron (NR_104190, intron 1 of 6) MER76|LTR|ERVL 101762 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 565-6 chr2 207422237 207422659 + 2.5 NA Intergenic Intergenic -107514 NM_001320793 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 347.5-3 chr1 240253561 240253717 + 2.5 NA intron (NM_020066, intron 6 of 17) L1MA4A|LINE|L1 161756 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 511-11 chr2 164677818 164678110 + 2.5 NA intron (NM_001365671, intron 14 of 15) L1ME3F|LINE|L1 9813 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 486.5-11 chr2 88450703 88450934 + 2.5 NA intron (NM_001135649, intron 1 of 1) MER33|DNA|hAT-Charlie 1875 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 389-40 chr6 136023019 136023263 + 2.5 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 49686 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 364.5-10 chr16 88608918 88609197 + 2.5 NA intron (NM_001294340, intron 8 of 18) intron (NM_001294340, intron 8 of 18) -29515 NM_013278 27189 Hs.278911 NM_013278 ENSG00000124391 IL17C CX2|IL-17C interleukin 17C protein-coding 196.5-12 chr18 38488050 38488191 + 2.5 NA Intergenic Intergenic 830985 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 490.5-17 chr5 144689376 144689789 + 2.5 NA Intergenic MER4D|LTR|ERV1 484191 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 377.5-8 chr15 87675716 87675924 + 2.5 NA Intergenic Intergenic 98891 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 366.5-22 chr20 11197215 11197447 + 2.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 76052 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 589-2 chr1 171873773 171874222 + 2.5 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 9805 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 445-27 chr7 40914296 40914695 + 2.5 NA Intergenic Intergenic 65444 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 838-11 chr9 17393724 17394129 + 2.5 NA intron (NM_001365029, intron 14 of 25) intron (NM_001365029, intron 14 of 25) -185140 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 541.5-7 chr12 107384317 107384860 + 2.5 NA intron (NM_001347944, intron 1 of 14) LTR16A|LTR|ERVL 64000 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 900 chr1 179919756 179920290 + 2.5 NA TTS (NM_015602) TTS (NM_015602) -34787 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 509-7 chr14 64107235 64107724 + 2.5 NA intron (NM_015180, intron 64 of 114) intron (NM_015180, intron 64 of 114) -12354 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 599-17 chr9 100844513 100844832 + 2.5 NA Intergenic Intergenic -184055 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 519-2 chr1 237005292 237005756 + 2.5 NA Intergenic Intergenic -1083 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 579-5 chr15 94501125 94501587 + 2.5 NA Intergenic L1MA9|LINE|L1 145426 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 468-19 chr2 181424821 181425218 + 2.5 NA Intergenic Intergenic -31873 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 805.5-3 chr8 8985903 8986630 + 2.5 NA Intergenic L1M6|LINE|L1 -16631 NM_153332 90459 Hs.20000 NM_153332 ENSG00000104626 ERI1 3'HEXO|HEXO|THEX1 exoribonuclease 1 protein-coding 542.5-22 chr4 138397347 138397696 + 2.5 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 87810 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 441.5-8 chr12 58900531 58900945 + 2.5 NA intron (NM_153377, intron 3 of 18) L3|LINE|CR1 18808 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 507.5-11 chr5 44694587 44694979 + 2.5 NA Intergenic Intergenic 114010 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 445-36 chrX 93804125 93804490 + 2.5 NA Intergenic Intergenic 130101 NM_001171110 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 733.5-2 chr16 82600114 82600446 + 2.5 NA Intergenic Intergenic -26689 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 354.5-31 chr5 135447315 135447531 + 2.5 NA promoter-TSS (NM_130848) promoter-TSS (NM_130848) -75 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 330.5-21 chr2 128259117 128259293 + 2.5 NA Intergenic Intergenic 59663 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 682.5-10 chr6 35646373 35646767 + 2.5 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) 18219 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 418.5-3 chr1 117247157 117247401 + 2.5 NA Intergenic L1MC4a|LINE|L1 -36319 NM_001253850 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 496-14 chr2 39730407 39730878 + 2.5 NA Intergenic Intergenic 48616 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 351.5-4 chr12 129757186 129757460 + 2.5 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 146702 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 510.5-6 chr2 68839365 68839573 + 2.5 NA Intergenic Intergenic 31928 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 398.5-9 chr19 33575767 33575973 + 2.5 NA Intergenic MER119|DNA|hAT-Charlie -46083 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 248-10 chr2 69601942 69602130 + 2.5 NA intron (NM_014911, intron 2 of 21) L1MC4|LINE|L1 41703 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 448.5-9 chr17 27264908 27265277 + 2.5 NA Intergenic AluSz6|SINE|Alu 28904 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 836 chr1 247824849 247825241 + 2.5 NA Intergenic Intergenic -9316 NM_001001966 284532 Hs.626620 NM_001001966 ENSG00000196772 OR14A16 OR5AT1 olfactory receptor family 14 subfamily A member 16 protein-coding 390.5-13 chr2 33723170 33723389 + 2.5 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) 4938 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 497.5-13 chr5 109295241 109295687 + 2.5 NA intron (NR_149040, intron 3 of 3) L1PA13|LINE|L1 30905 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 253.5-6 chr12 6439893 6440023 + 2.5 NA intron (NR_015382, intron 5 of 5) L1MEd|LINE|L1 -4927 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 596-2 chr1 87010333 87010821 + 2.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 95942 NM_001134492 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 292.5-21 chr3 86021868 86022012 + 2.5 NA intron (NM_001256502, intron 9 of 10) L1MA9|LINE|L1 -193890 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 326-4 chr1 198792485 198792678 + 2.5 NA Intergenic Intergenic 66401 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 385-12 chr16 54777585 54777784 + 2.5 NA Intergenic AluSx1|SINE|Alu 70549 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 521.5-5 chr5 67533677 67533927 + 2.5 NA Intergenic Intergenic 112987 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 259.5-38 chr6 7071535 7071670 + 2.5 NA Intergenic L1M5|LINE|L1 -36141 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 347.5-22 chr4 45384359 45384542 + 2.5 NA Intergenic Intergenic -657816 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 637.5-2 chr16 19013887 19014229 + 2.5 NA intron (NM_001300732, intron 2 of 14) AluY|SINE|Alu 29771 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 473.5-3 chr11 62514361 62514664 + 2.5 NA intron (NM_024060, intron 4 of 5) intron (NM_024060, intron 4 of 5) 31152 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 471-16 chr16 78057276 78057598 + 2.5 NA Intergenic Intergenic 34889 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 292-24 chr3 35511779 35511962 + 2.5 NA Intergenic Intergenic -117847 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 553-16 chrX 133879110 133879391 + 2.5 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -18193 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 421-20 chr2 232570112 232570424 + 2.5 NA intron (NM_001276336, intron 6 of 6) intron (NM_001276336, intron 6 of 6) 19462 NM_001330202 9470 Hs.292026 NM_004846 ENSG00000135930 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP eukaryotic translation initiation factor 4E family member 2 protein-coding 891-3 chr8 71026440 71026905 + 2.5 NA Intergenic Intergenic 330034 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 697-2 chr16 3448162 3448603 + 2.5 NA intron (NM_001083601, intron 1 of 7) intron (NM_001083601, intron 1 of 7) 4702 NM_001083601 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15|NatF|hNaa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 456-37 chrX 64232056 64232424 + 2.5 NA Intergenic Intergenic -1633 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 383.5-19 chr5 160781606 160781904 + 2.5 NA intron (NM_001366652, intron 2 of 24) intron (NM_001366652, intron 2 of 24) 70456 NM_001366654 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 661-10 chr8 59978335 59978924 + 2.5 NA Intergenic L1ME3A|LINE|L1 302771 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 589-7 chr19 28784937 28785298 + 2.5 NA Intergenic L1MA9|LINE|L1 -57423 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 505.5-23 chr8 63719717 63719962 + 2.5 NA Intergenic Intergenic -49591 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 619.5-3 chr2 41997658 41998139 + 2.5 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat -44092 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 249.5-13 chr19 28341253 28341407 + 2.5 NA Intergenic Intergenic -265358 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 281.5-35 chr6 140486157 140486321 + 2.5 NA Intergenic Intergenic -197575 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 751-4 chr22 32341064 32341676 + 2.5 NA Intergenic Intergenic -13515 NM_006604 10738 Hs.558455 NM_006604 ENSG00000128276 RFPL3 RNF120 ret finger protein like 3 protein-coding 650-6 chr21 26188978 26189357 + 2.5 NA Intergenic L2a|LINE|L2 -18039 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 232.5-22 chr3 56876489 56876619 + 2.5 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) 39882 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 339.5-29 chr7 29558030 29558218 + 2.5 NA Intergenic Intergenic -5711 NM_001329996 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 518.5-8 chr14 59005548 59005973 + 2.5 NA intron (NR_110547, intron 4 of 5) THE1B|LTR|ERVL-MaLR 177472 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 311-15 chr2 80718220 80718525 + 2.5 NA Intergenic MIR|SINE|MIR 404993 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 684-8 chr4 96215819 96216274 + 2.5 NA Intergenic L2b|LINE|L2 -94657 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 555.5-5 chr3 100946968 100947213 + 2.5 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 46400 NM_001365642 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 278-26 chr8 116733565 116733692 + 2.5 NA intron (NM_003756, intron 1 of 7) intron (NM_003756, intron 1 of 7) 22195 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 430-21 chr4 40773047 40773278 + 2.5 NA intron (NM_024677, intron 4 of 11) MIRb|SINE|MIR 23207 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 296-36 chr8 123252734 123252881 + 2.5 NA intron (NR_037874, intron 2 of 2) intron (NR_037874, intron 2 of 2) -11430 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 580.5-3 chr17 71234285 71234677 + 2.5 NA Intergenic Intergenic -32302 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 287.5-15 chr2 21932630 21932797 + 2.5 NA Intergenic MIRb|SINE|MIR -222061 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 304.5-5 chr1 216421974 216422110 + 2.5 NA exon (NM_007123, exon 2 of 21) exon (NM_007123, exon 2 of 21) 1354 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 566.5-3 chr14 49506570 49506899 + 2.5 NA Intergenic Intergenic 79646 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 301-26 chr2 150045643 150045869 + 2.5 NA Intergenic Intergenic -186565 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 555-12 chr2 121519571 121519922 + 2.5 NA intron (NM_015282, intron 6 of 38) intron (NM_015282, intron 6 of 38) -11134 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 365-2 chr10 97547294 97547577 + 2.5 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -25006 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 546 chr1 168482016 168482416 + 2.5 NA intron (NR_125956, intron 4 of 4) MLT1G|LTR|ERVL-MaLR 13428 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 585.5-7 chr6 62705252 62705605 + 2.5 NA Intergenic L1M1|LINE|L1 -419201 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 573 chr1 241544395 241544852 + 2.5 NA intron (NM_003679, intron 1 of 14) MLT1G1|LTR|ERVL-MaLR 12245 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 352.5-30 chr8 54774818 54774987 + 2.5 NA Intergenic Intergenic 158806 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 471.5-5 chr10 87541079 87541315 + 2.5 NA intron (NM_001178118, intron 4 of 4) intron (NM_001178118, intron 4 of 4) 33364 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 399-27 chr3 142300083 142300290 + 2.5 NA Intergenic AluJb|SINE|Alu -74601 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 389-16 chr15 101706224 101706403 + 2.5 NA intron (NM_152334, intron 6 of 18) MER33|DNA|hAT-Charlie 18160 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 349.5-23 chr4 71971546 71971695 + 2.5 NA Intergenic AluSg|SINE|Alu -60184 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 564-5 chr12 8020441 8020675 + 2.5 NA Intergenic L1ME3A|LINE|L1 -12158 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 508.5-19 chr5 121006102 121006403 + 2.5 NA Intergenic LTR16E1|LTR|ERVL -316298 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 527.5-2 chr11 40464208 40464710 + 2.5 NA intron (NM_020929, intron 2 of 4) L1PB4|LINE|L1 -171329 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 414.5-3 chr10 26769386 26769715 + 2.5 NA intron (NM_001012752, intron 4 of 9) intron (NM_001012752, intron 4 of 9) 71849 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 562 chr13 46949725 46950091 + 2.5 NA Intergenic L2a|LINE|L2 -52832 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 373.5-8 chr14 66273062 66273351 + 2.5 NA Intergenic Intergenic -213165 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 273-30 chr5 151065466 151065601 + 2.5 NA promoter-TSS (NM_001258455) promoter-TSS (NM_001258455) -402 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 248-15 chr2 199648142 199648263 + 2.5 NA intron (NR_110270, intron 6 of 6) L1MA9|LINE|L1 40134 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 364-11 chr12 99640401 99640546 + 2.5 NA intron (NM_152788, intron 9 of 25) MSTD|LTR|ERVL-MaLR -7280 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 384-32 chr9 75858877 75859107 + 2.5 NA Intergenic Intergenic -31652 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 357-5 chr10 81581626 81581855 + 2.5 NA Intergenic Intergenic -293454 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 311.5-5 chr1 119702713 119702879 + 2.5 NA Intergenic Intergenic -9138 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 331.5-22 chr6 45277270 45277438 + 2.5 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -50963 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 615-11 chr20 51367756 51368044 + 2.5 NA Intergenic AluSz|SINE|Alu 85077 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 447-19 chr3 114992483 114992807 + 2.5 NA intron (NM_015642, intron 1 of 9) L1MEd|LINE|L1 78769 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 519-7 chr16 85253885 85254256 + 2.5 NA Intergenic Intergenic -28888 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 745-9 chr4 124625110 124625508 + 2.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -66875 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 449-22 chr4 49054565 49054761 + 2.5 NA intron (NM_001286791, intron 15 of 15) L1MA8|LINE|L1 68021 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 636-6 chr12 10595952 10596285 + 2.5 NA intron (NR_028045, intron 3 of 6) intron (NR_028045, intron 3 of 6) 3717 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 837-6 chr5 120411864 120412418 + 2.5 NA Intergenic L1M5|LINE|L1 -52137 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 334-20 chr3 122703322 122703532 + 2.5 NA intron (NM_017554, intron 6 of 16) intron (NM_017554, intron 6 of 16) 22588 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 377.5-9 chr2 22814372 22814559 + 2.5 NA Intergenic Intergenic 277986 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 504-11 chr17 32756333 32756746 + 2.5 NA intron (NM_015194, intron 10 of 21) intron (NM_015194, intron 10 of 21) 120585 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 466-27 chr6 150451664 150451891 + 2.5 NA Intergenic MamRTE1|LINE|RTE-BovB 82765 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 355.5 chr1 20010432 20010716 + 2.5 NA Intergenic MER54A|LTR|ERVL -30140 NM_001161728 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 435-33 chr6 141184180 141184488 + 2.5 NA Intergenic LTR12D|LTR|ERV1 500520 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 728-3 chr15 94569906 94570381 + 2.5 NA Intergenic Intergenic 214213 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 164-9 chr17 60227917 60228004 + 2.5 NA intron (NM_032582, intron 12 of 33) intron (NM_032582, intron 12 of 33) 3685 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 314.5-31 chr6 58072669 58073026 + 2.5 NA Intergenic Intergenic -111401 NR_125727 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 311.5-33 chr4 64765573 64765744 + 2.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 238842 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 498.5-9 chr20 8349280 8349500 + 2.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 100686 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 602-19 chr8 71232622 71233105 + 2.5 NA intron (NM_001370336, intron 12 of 17) intron (NM_001370336, intron 12 of 17) 123843 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 284.5-26 chr20 7017163 7017357 + 2.5 NA Intergenic Intergenic 236942 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 348-4 chr1 184654745 184655010 + 2.5 NA Intergenic MIR|SINE|MIR 99981 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 340.5-18 chr3 46860365 46860535 + 2.5 NA intron (NM_000258, intron 3 of 6) intron (NM_000258, intron 3 of 6) 3033 NM_000258 4634 Hs.517939 NM_000258 ENSG00000160808 MYL3 CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl myosin light chain 3 protein-coding 244-24 chr4 159564208 159564368 + 2.5 NA Intergenic Intergenic 213496 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 398-13 chr16 78306325 78306552 + 2.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 206784 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 272-26 chr4 41097118 41097303 + 2.5 NA intron (NM_173075, intron 3 of 16) intron (NM_173075, intron 3 of 16) 117332 NM_001330656 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 541-8 chr2 100421934 100422258 + 2.5 NA Intergenic Charlie1|DNA|hAT-Charlie -4428 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 529 chr1 44741461 44741880 + 2.5 NA intron (NM_006845, intron 2 of 20) AluJb|SINE|Alu 1833 NM_001297655 11004 Hs.720061 NM_006845 ENSG00000142945 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 445-20 chr4 114678954 114679140 + 2.5 NA TTS (NM_001128174) TTS (NM_001128174) 22288 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 441.5-12 chr2 41974027 41974317 + 2.5 NA Intergenic Intergenic -20366 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 294-21 chr2 115593100 115593303 + 2.5 NA intron (NM_001321912, intron 6 of 25) LTR49-int|LTR|ERV1 249386 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 433.5-20 chr21 14799053 14799395 + 2.5 NA Intergenic L1MA2|LINE|L1 119444 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 457.5-22 chr4 127792049 127792365 + 2.5 NA intron (NM_001317382, intron 1 of 18) intron (NM_001317382, intron 1 of 18) 8684 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 560.5-2 chr10 19947778 19948152 + 2.5 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 131533 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 425-2 chr1 104012514 104013015 + 2.5 NA Intergenic L1MA2|LINE|L1 -60259 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 330-26 chr2 229212766 229212933 + 2.5 NA intron (NM_001100818, intron 1 of 2) MIRc|SINE|MIR 19243 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 615-14 chr4 53310766 53311179 + 2.5 NA intron (NM_152540, intron 3 of 8) intron (NM_152540, intron 3 of 8) 55089 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 657.5-10 chr7 16314800 16315194 + 2.5 NA intron (NM_001101417, intron 2 of 8) L1MC1|LINE|L1 104511 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 455.5-13 chr2 124164243 124164483 + 2.5 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 139076 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 523.5-12 chr4 75529904 75530346 + 2.5 NA TTS (NM_144721) TTS (NM_144721) 15652 NM_144721 152815 Hs.479971 NM_144721 ENSG00000174796 THAP6 - THAP domain containing 6 protein-coding 352-20 chr2 123503572 123503843 + 2.5 NA Intergenic Intergenic -430226 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 733.5-3 chr19 37161729 37162121 + 2.5 NA intron (NM_001288800, intron 2 of 4) AluSx1|SINE|Alu 10511 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 520-13 chr18 11540012 11540557 + 2.5 NA Intergenic MER41-int|LTR|ERV1 50236 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 1133.5 chr5 18343912 18344676 + 2.5 NA Intergenic L1PB4|LINE|L1 537020 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 241-12 chr2 237078052 237078163 + 2.5 NA Intergenic L1MB7|LINE|L1 -7334 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 666-8 chr14 80350699 80351002 + 2.5 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -119793 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 480.5-7 chr2 172945403 172945767 + 2.5 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 17380 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 344.5-20 chr20 50233425 50233605 + 2.5 NA Intergenic MIR|SINE|MIR -33971 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 790-9 chr6 70824661 70825172 + 2.5 NA intron (NM_001044305, intron 6 of 10) MER45B|DNA|hAT-Tip100 132144 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 228.5-34 chrX 121539497 121539598 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 168575 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 380.5-3 chr10 104342524 104342764 + 2.5 NA Intergenic AluSz6|SINE|Alu -4179 NM_001272013 85450 Hs.523252 NM_033397 ENSG00000148841 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 272-9 chr14 69536496 69536669 + 2.5 NA Intergenic MIR3|SINE|MIR 38289 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 663-6 chr11 130229630 130230175 + 2.5 NA non-coding (NR_163264, exon 10 of 11) non-coding (NR_163264, exon 10 of 11) 70120 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 690-9 chr2 213318622 213318943 + 2.5 NA TTS (NM_001025436) TTS (NM_001025436) 34318 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 216.5-4 chr1 176914314 176914454 + 2.5 NA intron (NM_207108, intron 16 of 21) intron (NM_207108, intron 16 of 21) 115061 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 442.5-8 chr14 74489059 74489261 + 2.5 NA intron (NM_001363688, intron 1 of 3) intron (NM_001363688, intron 1 of 3) 4352 NM_006432 10577 Hs.433222 NM_006432 ENSG00000119655 NPC2 EDDM1|HE1 NPC intracellular cholesterol transporter 2 protein-coding 712-3 chr19 45950577 45951013 + 2.5 NA intron (NM_002516, intron 3 of 3) (CAA)n|Simple_repeat|Simple_repeat 23070 NM_002516 4858 Hs.375439 NM_002516 ENSG00000104967 NOVA2 ANOVA|NOVA3 NOVA alternative splicing regulator 2 protein-coding 466.5-6 chr14 57212197 57212509 + 2.5 NA intron (NM_006544, intron 15 of 17) Tigger4|DNA|TcMar-Tigger 56552 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 610-2 chr10 96783674 96784237 + 2.5 NA Intergenic AluSp|SINE|Alu 33689 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 456.5-11 chr3 11046604 11046857 + 2.5 NA Intergenic AluSx1|SINE|Alu -27506 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 619.5-4 chr2 68757366 68758003 + 2.5 NA intron (NM_001364821, intron 1 of 10) L1MB3|LINE|L1 -17226 NM_014882 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 254.5-2 chr1 185293403 185293667 + 2.5 NA Intergenic Intergenic 23708 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 257.5-11 chr11 35582838 35583020 + 2.5 NA Intergenic Intergenic -35531 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 385.5-39 chr6 53804403 53804624 + 2.5 NA intron (NM_018214, intron 1 of 13) L1ME3G|LINE|L1 9508 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 339-27 chr4 115379015 115379280 + 2.5 NA Intergenic Intergenic -265527 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 691-11 chr9 77118274 77118711 + 2.5 NA Intergenic Intergenic -58953 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 359.5-29 chr5 18388361 18388557 + 2.5 NA Intergenic Intergenic 581185 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 438-26 chr4 35432386 35432614 + 2.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 811439 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 563-12 chr5 3878087 3878482 + 2.5 NA Intergenic Intergenic 282452 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 358-30 chr21 33045304 33045484 + 2.5 NA Intergenic AluJb|SINE|Alu -12435 NR_104056 101930746 Hs.580934 NR_104056 ENSG00000232539 LINC00945 - long intergenic non-protein coding RNA 945 ncRNA 939 chr11 83932946 83933634 + 2.5 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -250865 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 390.5-29 chr7 38930893 38931119 + 2.5 NA Intergenic Intergenic -21806 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 606.5-2 chr10 71845460 71845899 + 2.5 NA intron (NM_001042465, intron 1 of 14) intron (NM_001042465, intron 1 of 14) 5572 NM_001042465 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 407.5-2 chr10 73494819 73495128 + 2.5 NA promoter-TSS (NR_132103) promoter-TSS (NR_132103) -779 NR_132104 101929145 Hs.434502 NR_132103 ENSG00000221817 PPP3CB-AS1 USP54-AS1 PPP3CB antisense RNA 1 (head to head) ncRNA 404.5-18 chr4 91618995 91619239 + 2.5 NA Intergenic Charlie6|DNA|hAT-Charlie 658185 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 476.5-9 chr18 2005487 2005866 + 2.5 NA Intergenic L1ME3|LINE|L1 565829 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 689.5-6 chr6 7445327 7445697 + 2.5 NA Intergenic Intergenic 55683 NM_001348194 83732 Hs.437474 NM_031480 ENSG00000124784 RIOK1 AD034|RIO1|RRP10|bA288G3.1 RIO kinase 1 protein-coding 420-26 chr3 16318394 16318595 + 2.5 NA intron (NM_015150, intron 9 of 9) intron (NM_015150, intron 9 of 9) 53282 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 577.5-4 chr10 77300316 77300628 + 2.5 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 50289 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 129-6 chr8 113798369 113798475 + 2.5 NA Intergenic Intergenic -361483 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 272-38 chr7 30705059 30705246 + 2.5 NA Intergenic Intergenic -5049 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 415.5-2 chr1 113588468 113588785 + 2.5 NA intron (NM_001142782, intron 4 of 20) L2a|LINE|L2 170529 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 579.5-9 chr3 8841979 8842387 + 2.5 NA Intergenic Intergenic -72569 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 669-2 chr10 64604865 64605283 + 2.5 NA Intergenic Intergenic -220454 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 397-23 chr3 58317849 58318051 + 2.5 NA exon (NM_001348712, exon 5 of 5) exon (NM_001348712, exon 5 of 5) 11705 NM_001348712 109703458 Hs.446320 NM_001348712 ENSG00000255154 HTD2 - hydroxyacyl-thioester dehydratase type 2 protein-coding 147.5-8 chr17 31436456 31436538 + 2.5 NA intron (NM_032932, intron 3 of 14) intron (NM_032932, intron 3 of 14) 44822 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 363.5-21 chr4 42424722 42424982 + 2.5 NA intron (NM_001105529, intron 32 of 35) intron (NM_001105529, intron 32 of 35) 27364 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 254-16 chr2 108057295 108057448 + 2.5 NA Intergenic MER5B|DNA|hAT-Charlie -4616 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 399.5-6 chr14 85056026 85056242 + 2.5 NA Intergenic MIRb|SINE|MIR -215798 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 641-4 chr2 145633079 145633444 + 2.5 NA Intergenic Intergenic -953796 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 448.5-17 chr5 40911227 40911597 + 2.5 NA intron (NM_000587, intron 1 of 17) intron (NM_000587, intron 1 of 17) 1915 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 235-20 chr2 135823482 135823603 + 2.5 NA TTS (NR_045486) TTS (NR_045486) 3351 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 325.5-3 chr1 177730658 177730868 + 2.5 NA Intergenic L1MEh|LINE|L1 30239 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 908-4 chr21 21019288 21019888 + 2.5 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 21179 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 449.5-13 chr5 164447843 164448071 + 2.5 NA TTS (NR_105064) TTS (NR_105064) 19445 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 813.5-2 chr10 113581099 113581701 + 2.5 NA intron (NM_001177660, intron 8 of 12) intron (NM_001177660, intron 8 of 12) 28347 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 207-4 chr11 25571029 25571186 + 2.5 NA Intergenic Intergenic -618016 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 304.5-3 chr1 93708907 93709054 + 2.5 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -27143 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 489-5 chr10 74779730 74779939 + 2.5 NA Intergenic PRIMA41-int|LTR|ERV1 -45421 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 448-16 chr2 44270288 44270727 + 2.5 NA Intergenic MER51A|LTR|ERV1 -4973 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 391.5-26 chr3 113251088 113251370 + 2.5 NA 3' UTR (NM_001301867, exon 4 of 4) 3' UTR (NM_001301867, exon 4 of 4) 39113 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 268-16 chr4 43101515 43101638 + 2.5 NA Intergenic (GTATAAT)n|Simple_repeat|Simple_repeat 208310 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 517-13 chr7 103902555 103902838 + 2.5 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 86820 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 937-3 chr9 35742489 35742929 + 2.5 NA intron (NM_020944, intron 3 of 16) intron (NM_020944, intron 3 of 16) 6519 NM_001330660 57704 Hs.443134 NM_020944 ENSG00000070610 GBA2 AD035|NLGase|SPG46 glucosylceramidase beta 2 protein-coding 413.5-12 chr2 111647603 111647873 + 2.5 NA Intergenic L1MB4|LINE|L1 123396 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 497.5-6 chr12 3101698 3101908 + 2.5 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 24424 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 324-32 chr4 181825497 181825722 + 2.5 NA intron (NR_147188, intron 1 of 2) intron (NR_147188, intron 1 of 2) 4364 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 486-42 chr8 135436836 135437234 + 2.5 NA Intergenic L2a|LINE|L2 -20421 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 500.5-5 chr11 114542265 114542609 + 2.5 NA intron (NM_152315, intron 2 of 5) L1M8|LINE|L1 17444 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 675.5-6 chr18 12777288 12777704 + 2.5 NA Intergenic Intergenic -28074 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 396.5-6 chr10 34063734 34063942 + 2.5 NA Intergenic L1MEg|LINE|L1 -291158 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 616-7 chr18 9384809 9385101 + 2.5 NA intron (NM_020648, intron 3 of 4) intron (NM_020648, intron 3 of 4) 50182 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 435-39 chr8 114714557 114714786 + 2.5 NA Intergenic L1PA6|LINE|L1 953342 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 333-30 chr5 12111265 12111447 + 2.5 NA Intergenic L1MEg|LINE|L1 -206910 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 861.5-2 chr8 12762169 12762527 + 2.5 NA Intergenic AluSg|SINE|Alu -6822 NM_152271 91694 Hs.180178 NM_152271 ENSG00000154359 LONRF1 RNF191 LON peptidase N-terminal domain and ring finger 1 protein-coding 341.5-35 chr8 143349821 143350015 + 2.5 NA intron (NM_001258447, intron 1 of 13) AluSz|SINE|Alu 10059 NM_001258447 116447 Hs.528574 NM_052963 ENSG00000184428 TOP1MT - DNA topoisomerase I mitochondrial protein-coding 414-28 chr4 91896284 91896527 + 2.5 NA Intergenic Intergenic 380897 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 568-10 chr3 134378389 134378856 + 2.5 NA Intergenic Intergenic -3205 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 410-13 chr2 163603869 163604100 + 2.5 NA 3' UTR (NM_001321825, exon 2 of 2) 3' UTR (NM_001321825, exon 2 of 2) 132024 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 440.5-27 chrX 151791342 151791703 + 2.5 NA Intergenic Intergenic 56776 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 1150.5 chr2 4981545 4982119 + 2.5 NA Intergenic Intergenic -325610 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 347.5-31 chr8 122486890 122487147 + 2.5 NA intron (NR_131202, intron 2 of 3) LTR33|LTR|ERVL 81626 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 669.5-6 chr20 39930909 39931433 + 2.5 NA Intergenic L1ME3|LINE|L1 -73290 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 301-27 chr3 24802422 24802604 + 2.5 NA Intergenic L1ME1|LINE|L1 -26810 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 379.5-2 chr1 174937653 174937821 + 2.5 NA intron (NR_121196, intron 4 of 5) AluSx3|SINE|Alu 16524 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 480-17 chr2 136635931 136636553 + 2.5 NA Intergenic MER39B|LTR|ERV1 -129303 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 520.5-11 chr3 40811186 40811446 + 2.5 NA Intergenic L1MB8|LINE|L1 286356 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 677-3 chr14 25228471 25228818 + 2.5 NA Intergenic L2a|LINE|L2 -178347 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 731-5 chr20 49047983 49048344 + 2.5 NA intron (NM_001362762, intron 1 of 24) (T)n|Simple_repeat|Simple_repeat 1851 NM_001362762 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 646.5-10 chr3 145221665 145222011 + 2.5 NA Intergenic Charlie2a|DNA|hAT-Charlie 847347 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 308-5 chr11 31865064 31865251 + 2.5 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 38590 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 561.5-4 chr16 50848814 50849100 + 2.5 NA Intergenic Tigger12A|DNA|TcMar-Tigger -29816 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 407-33 chr8 105919916 105920088 + 2.5 NA intron (NR_125796, intron 2 of 7) L1PA17|LINE|L1 140501 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 225.5-36 chr8 133365460 133365562 + 2.5 NA Intergenic Intergenic -68207 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 298.5-23 chr7 22218696 22218847 + 2.5 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -23961 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 731-4 chr2 3596852 3597172 + 2.5 NA intron (NR_045659, intron 1 of 7) intron (NR_045659, intron 1 of 7) 1900 NR_045659 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 407-27 chr7 26703748 26703963 + 2.5 NA intron (NM_003930, intron 9 of 12) MIR|SINE|MIR 65984 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 338.5 chr1 38817235 38817547 + 2.5 NA Intergenic Intergenic 42381 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 448.5-11 chr2 51437701 51437956 + 2.5 NA intron (NR_135237, intron 4 of 10) L1MC2|LINE|L1 405227 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 399-12 chr12 124352837 124353109 + 2.5 NA intron (NM_001077261, intron 28 of 47) LTR82A|LTR|ERVL -15731 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 497-15 chr8 85494691 85494995 + 2.5 NA Intergenic Intergenic -29928 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 361-31 chr9 8511745 8511919 + 2.5 NA intron (NM_130392, intron 10 of 30) intron (NM_130392, intron 10 of 30) 222114 NM_001040712 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 367.5-18 chr20 49850353 49850545 + 2.5 NA intron (NR_048539, intron 6 of 13) intron (NR_048539, intron 6 of 13) -13410 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 551-25 chr5 69019782 69020176 + 2.5 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 9948 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 309-32 chr5 14972870 14973043 + 2.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -101178 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 302.5-31 chr4 57728234 57728475 + 2.5 NA Intergenic Intergenic 302482 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 429-32 chr6 111452127 111452326 + 2.5 NA intron (NM_002912, intron 2 of 32) L1ME1|LINE|L1 -31246 NR_034111 643749 Hs.486228 NR_034108 ENSG00000231889 TRAF3IP2-AS1 C6UAS|C6orf3|NCRNA00248|TRAF3IP2-AS2 TRAF3IP2 antisense RNA 1 ncRNA 638-10 chr5 26692206 26692608 + 2.5 NA Intergenic Intergenic 346179 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 381.5-24 chr7 113527436 113527839 + 2.5 NA Intergenic L2a|LINE|L2 391372 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 436-20 chr2 146800331 146800547 + 2.5 NA Intergenic MIR3|SINE|MIR 213382 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 500.5 chr1 227856006 227856264 + 2.5 NA Intergenic Intergenic 40418 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 440-7 chr10 90248120 90248361 + 2.5 NA Intergenic Intergenic -290867 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 433.5-5 chr11 84114293 84114511 + 2.5 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 158878 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 809.5 chr10 57752487 57753003 + 2.5 NA Intergenic L1M4c|LINE|L1 -448186 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 294.5-32 chr7 99965002 99965157 + 2.5 NA Intergenic SATR2|Satellite|Satellite 10952 NM_001185 563 Hs.546239 NM_001185 ENSG00000160862 AZGP1 ZA2G|ZAG alpha-2-glycoprotein 1, zinc-binding protein-coding 548.5-3 chr14 51845951 51846375 + 2.5 NA Intergenic Intergenic -14449 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 823-4 chr9 85962699 85963266 + 2.5 NA intron (NM_024635, intron 6 of 22) intron (NM_024635, intron 6 of 22) 21453 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 532.5-17 chr7 7168307 7168619 + 2.5 NA Intergenic A-rich|Low_complexity|Low_complexity -14152 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 354.5-33 chr6 120242752 120243008 + 2.5 NA Intergenic Intergenic 227701 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 328.5-17 chr17 79525372 79525593 + 2.5 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -9334 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 283.5-38 chrX 36679791 36679967 + 2.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -239587 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 471-22 chr20 37567267 37567594 + 2.5 NA Intergenic Intergenic -39499 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 340.5-19 chr3 60364380 60364532 + 2.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 253414 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 489-26 chr5 73827753 73828067 + 2.5 NA intron (NM_001244364, intron 1 of 27) intron (NM_001244364, intron 1 of 27) 14364 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 641.5-3 chr16 76658446 76658857 + 2.5 NA TTS (NR_110934) TTS (NR_110934) 23653 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 446.5-15 chr4 77504413 77504705 + 2.5 NA Intergenic Intergenic -7194 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 428-8 chr14 37468350 37468660 + 2.5 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 126744 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 559.5-9 chr18 45912172 45912630 + 2.5 NA exon (NM_020964, exon 22 of 44) exon (NM_020964, exon 22 of 44) 54928 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 242-30 chr7 123279259 123279464 + 2.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -79390 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 350-25 chr4 141334366 141334607 + 2.5 NA Intergenic Intergenic -1869 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 360-45 chr9 91292959 91293227 + 2.5 NA intron (NM_001698, intron 6 of 9) Tigger1|DNA|TcMar-Tigger 68831 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 391-27 chr6 41069251 41069495 + 2.5 NA intron (NM_145063, intron 4 of 5) LTR84b|LTR|ERVL 2467 NM_001329688 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 565.5-15 chr6 43576377 43576769 + 2.5 NA promoter-TSS (NM_020750) promoter-TSS (NM_020750) 388 NM_001291969 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 269.5-9 chr11 99570561 99570771 + 2.5 NA intron (NM_175566, intron 1 of 21) L2a|LINE|L2 14521 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 617.5-12 chr7 8719256 8719573 + 2.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 285805 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 487-24 chr20 63146465 63146831 + 2.5 NA Intergenic L1ME2|LINE|L1 -31852 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 455-11 chr14 47406831 47407058 + 2.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -63698 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 655-2 chr11 112910969 112911294 + 2.5 NA Intergenic Intergenic -50289 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 731-6 chr5 63827192 63827743 + 2.5 NA Intergenic Intergenic 134825 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 652-9 chr2 48978217 48978634 + 2.5 NA intron (NM_000145, intron 8 of 9) intron (NM_000145, intron 8 of 9) -81178 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 376-15 chr2 45499468 45499700 + 2.5 NA intron (NM_018079, intron 14 of 20) L1MA4|LINE|L1 111683 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 433-17 chr21 32411318 32411632 + 2.5 NA promoter-TSS (NM_001320745) promoter-TSS (NM_001320745) -248 NM_001320745 59271 Hs.208358 NM_058187 ENSG00000166979 EVA1C B18|B19|C21orf63|C21orf64|FAM176C|PRED34|SUE21 eva-1 homolog C protein-coding 548-7 chr19 31219828 31220303 + 2.5 NA intron (NR_138036, intron 2 of 4) intron (NR_138036, intron 2 of 4) 52555 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 508.5-7 chr17 44138661 44139026 + 2.5 NA Intergenic Intergenic -3087 NM_001171251 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 416.5-16 chr4 109588718 109588912 + 2.5 NA intron (NM_017918, intron 1 of 7) intron (NM_017918, intron 1 of 7) 28569 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 477.5-7 chr11 82047409 82047770 + 2.5 NA intron (NR_120571, intron 5 of 7) THE1C-int|LTR|ERVL-MaLR -156753 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 363.5-12 chr16 66589035 66589299 + 2.5 NA TTS (NM_001199317) TTS (NM_001199317) 9704 NM_144673 146225 Hs.195685 NM_144673 ENSG00000140932 CMTM2 CKLFSF2 CKLF like MARVEL transmembrane domain containing 2 protein-coding 260-8 chr12 25708882 25709072 + 2.5 NA Intergenic Intergenic -60399 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 433.5-4 chr10 81124748 81125133 + 2.5 NA Intergenic Intergenic 475143 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 560-2 chr10 50805622 50806181 + 2.5 NA 3' UTR (NM_001198819, exon 15 of 15) 3' UTR (NM_001198819, exon 15 of 15) 65965 NM_001321957 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 459.5-7 chr12 127057724 127057919 + 2.5 NA intron (NR_104646, intron 1 of 6) intron (NR_104646, intron 1 of 6) 2576 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 491-21 chr4 154346189 154346524 + 2.5 NA intron (NM_001358235, intron 3 of 19) intron (NM_001358235, intron 3 of 19) 145443 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 361.5-8 chr16 13603826 13604132 + 2.5 NA Intergenic Intergenic -316178 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 312-15 chr2 206051168 206051328 + 2.5 NA intron (NM_017759, intron 4 of 10) FRAM|SINE|Alu 34926 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 330-40 chr7 38984987 38985217 + 2.5 NA intron (NR_138047, intron 4 of 6) intron (NR_138047, intron 4 of 6) 7193 NM_001166018 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 495-11 chr2 202189885 202190136 + 2.5 NA intron (NM_001277372, intron 18 of 23) AluJo|SINE|Alu 48587 NM_001371394 179-5 chr11 106897120 106897214 + 2.5 NA intron (NM_001256424, intron 4 of 8) L1MC1|LINE|L1 121309 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 494-8 chr17 48814347 48814623 + 2.5 NA intron (NM_001130918, intron 1 of 15) intron (NM_001130918, intron 1 of 15) 2605 NM_001366314 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 501.5-2 chr1 47288661 47289208 + 2.5 NA intron (NM_001282938, intron 11 of 18) AluSx1|SINE|Alu 25213 NM_001282938 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL STIL centriolar assembly protein protein-coding 381.5-19 chr5 140285891 140286243 + 2.5 NA intron (NM_002622, intron 2 of 3) intron (NM_002622, intron 2 of 3) 17034 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 573.5-2 chr11 79818236 79818807 + 2.5 NA Intergenic Intergenic -377491 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 400 chr1 115846585 115846818 + 2.5 NA Intergenic Intergenic -5575 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 371-26 chr7 38816743 38817039 + 2.5 NA intron (NM_014396, intron 7 of 28) AluJr|SINE|Alu 92300 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 465.5-8 chr16 70560757 70561033 + 2.5 NA intron (NM_012426, intron 16 of 25) Charlie17a|DNA|hAT-Charlie -19000 NM_152456 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 586.5-21 chr9 136267988 136268343 + 2.5 NA Intergenic Intergenic -22324 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding 302.5-22 chr2 222523368 222523563 + 2.5 NA intron (NM_152386, intron 3 of 4) intron (NM_152386, intron 3 of 4) 98922 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 271.5-35 chr6 111828716 111828835 + 2.5 NA intron (NM_153047, intron 2 of 13) L1MB2|LINE|L1 44296 NM_153047 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 624-12 chr7 27565379 27565935 + 2.5 NA intron (NM_152740, intron 4 of 7) L1ME1|LINE|L1 -50317 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 571-2 chr10 55000851 55001117 + 2.5 NA intron (NM_001354404, intron 3 of 34) MER52A|LTR|ERV1 -199693 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 511-7 chr12 488351 488637 + 2.5 NA intron (NM_173593, intron 1 of 19) L1MCa|LINE|L1 28555 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 413-5 chr1 224412452 224412699 + 2.5 NA intron (NM_025160, intron 6 of 13) intron (NM_025160, intron 6 of 13) -14264 NR_039896 100616468 NR_039896 ENSG00000266618 MIR4742 mir-4742 microRNA 4742 ncRNA 388.5-13 chr3 54302284 54302495 + 2.5 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 179837 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 357-20 chr2 71729875 71730030 + 2.5 NA Intergenic THE1C|LTR|ERVL-MaLR 263253 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 499.5-19 chr5 61220236 61220561 + 2.5 NA intron (NR_109908, intron 3 of 3) MLT1E1A|LTR|ERVL-MaLR 44531 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 610-13 chr5 8943993 8944329 + 2.5 NA Intergenic Intergenic 104429 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 296.5-6 chr10 24111720 24111903 + 2.5 NA intron (NM_001098500, intron 2 of 18) AluJo|SINE|Alu -96980 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 607.5-11 chr4 29646870 29647320 + 2.5 NA Intergenic Intergenic 432803 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 339.5-33 chr9 32901715 32901929 + 2.5 NA Intergenic Intergenic 99754 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 342-5 chr10 59043944 59044120 + 2.5 NA Intergenic Intergenic 44514 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 337.5-24 chr4 147331228 147331423 + 2.5 NA Intergenic Intergenic 13392 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 740.5-6 chr2 147522236 147522711 + 2.5 NA Intergenic L3|LINE|CR1 -322044 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 465-27 chr2 190662547 190662798 + 2.5 NA intron (NM_001321314, intron 1 of 6) intron (NM_001321314, intron 1 of 6) 3514 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 269.5-30 chr3 13696438 13696663 + 2.5 NA intron (NR_027103, intron 2 of 5) L3|LINE|CR1 45829 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 425-15 chr12 78760713 78760958 + 2.5 NA Intergenic THE1D|LTR|ERVL-MaLR -103147 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 380-25 chr7 136048811 136049061 + 2.5 NA Intergenic Intergenic -71577 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 455-26 chr5 174494814 174495162 + 2.5 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 158634 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 462.5-21 chr7 3665051 3665353 + 2.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 363950 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 262.5-18 chr4 136712639 136712796 + 2.5 NA Intergenic Intergenic -481039 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 441-14 chr17 55547212 55547410 + 2.5 NA Intergenic (TTCTT)n|Simple_repeat|Simple_repeat -125476 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 364.5-21 chr4 147230471 147230641 + 2.5 NA Intergenic Intergenic 114161 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 869.5-6 chr5 86311343 86311980 + 2.5 NA Intergenic Intergenic 29217 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 204-20 chr6 135946641 135946763 + 2.5 NA intron (NM_018945, intron 1 of 12) L1ME3Cz|LINE|L1 95001 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 414.5-20 chr4 118178555 118178828 + 2.5 NA intron (NM_004784, intron 6 of 13) L1MB2|LINE|L1 -100071 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 682.5-12 chr7 54953630 54953996 + 2.5 NA Intergenic Intergenic -65204 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 341-19 chr2 145746900 145747129 + 2.5 NA Intergenic Intergenic -840043 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 800 chr1 31369969 31370424 + 2.5 NA intron (NM_001320996, intron 1 of 3) MIRb|SINE|MIR 2880 NM_004102 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 476.5-3 chr11 115431022 115431343 + 2.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 34426 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 329.5-9 chr19 36897603 36897831 + 2.5 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 18322 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 679-10 chr2 10656189 10656706 + 2.5 NA intron (NM_001261394, intron 10 of 19) intron (NM_001261394, intron 10 of 19) 33528 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 152-4 chr13 28196359 28196426 + 2.5 NA intron (NM_175854, intron 4 of 18) intron (NM_175854, intron 4 of 18) -57218 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 383-23 chr3 103455373 103455574 + 2.5 NA Intergenic LTR16E2|LTR|ERVL 68643 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 570.5-4 chr12 24945508 24945902 + 2.5 NA intron (NM_001178091, intron 1 of 9) AluSz6|SINE|Alu 3396 NM_001178092 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 587.5-11 chr2 51204302 51204717 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 171908 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 516.5-6 chr2 58938751 58939175 + 2 NA intron (NR_033873, intron 6 of 13) MLT1D|LTR|ERVL-MaLR -278745 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 221-12 chr2 235649904 235650090 + 2 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -132076 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 356-39 chr9 37308821 37309001 + 2 NA intron (NR_110317, intron 4 of 7) AluSc|SINE|Alu -113785 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 296.5-17 chr2 121434613 121434981 + 2 NA intron (NM_015282, intron 19 of 38) AluSz6|SINE|Alu -96083 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 675-8 chr4 83525238 83525722 + 2 NA Intergenic LTR8A|LTR|ERV1 -10434 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 382.5-15 chr3 16854688 16854895 + 2 NA Intergenic L1ME2|LINE|L1 -30164 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 413.5-20 chr7 33313415 33313892 + 2 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 184089 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 154-5 chr3 196736713 196736805 + 2 NA TTS (NM_001166304) TTS (NM_001166304) -3098 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 680-5 chr5 161377883 161378368 + 2 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 169999 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 254-7 chr11 78505519 78505721 + 2 NA intron (NM_024678, intron 6 of 13) intron (NM_024678, intron 6 of 13) -27556 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 923.5-2 chr3 50048944 50049485 + 2 NA intron (NM_001349194, intron 4 of 17) AluSx3|SINE|Alu -39705 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 385-24 chr3 111908884 111909199 + 2 NA intron (NM_001134437, intron 3 of 17) L2c|LINE|L2 49214 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 334.5-2 chr1 97647740 97648059 + 2 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -149022 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 454.5-27 chr7 25663616 25664087 + 2 NA promoter-TSS (NR_157831) promoter-TSS (NR_157831) -711 NR_157826 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 234.5-5 chr10 52826441 52826618 + 2 NA Intergenic MIR|SINE|MIR -54829 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 570-7 chr12 50829081 50829458 + 2 NA Intergenic L1M1|LINE|L1 -13657 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 464.5-4 chr1 192073872 192074209 + 2 NA Intergenic Intergenic -84422 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 360.5-13 chr3 14736871 14737083 + 2 NA intron (NM_001184957, intron 12 of 16) L1MEg|LINE|L1 61836 NM_001184957 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 687.5-5 chr3 24855991 24856488 + 2 NA intron (NM_001290216, intron 1 of 10) intron (NM_001290216, intron 1 of 10) 26916 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 669 chr1 101130335 101131011 + 2 NA Intergenic Intergenic 104827 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 358-41 chr6 64652494 64652784 + 2 NA intron (NM_001292009, intron 22 of 43) MLT1E1A|LTR|ERVL-MaLR -648779 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 492.5-10 chr17 62041498 62041948 + 2 NA intron (NM_005121, intron 3 of 29) AluJo|SINE|Alu 23555 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 243-26 chr5 56408006 56408152 + 2 NA Intergenic Intergenic 73690 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 286.5-33 chr7 96344762 96345005 + 2 NA Intergenic Intergenic -22736 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 394-15 chr2 101826531 101826772 + 2 NA intron (NM_145686, intron 5 of 30) MIR|SINE|MIR 128944 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 347.5-16 chr2 80638392 80638657 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 325145 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 298.5-3 chr10 23239562 23239723 + 2 NA intron (NM_001365862, intron 13 of 15) intron (NM_001365862, intron 13 of 15) 47330 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 551.5-2 chr1 193687196 193687539 + 2 NA Intergenic Intergenic 382622 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 488.5-7 chr22 27888099 27888533 + 2 NA intron (NM_001284278, intron 7 of 11) L1ME4b|LINE|L1 30898 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 786-7 chr22 25396927 25397459 + 2 NA Intergenic L1ME3G|LINE|L1 -15616 NM_001135772 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 428.5-10 chr13 72082259 72082539 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -215195 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 463-12 chr17 54807812 54808339 + 2 NA Intergenic MER4A1_|LTR|ERV1 -92616 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 375-9 chr13 60755291 60755813 + 2 NA Intergenic Intergenic 82597 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 250.5-12 chr14 82984371 82984591 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 341849 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 238-29 chr4 184650333 184650452 + 2 NA promoter-TSS (NM_001354781) promoter-TSS (NM_001354781) 654 NM_001345899 201973 Hs.481307 NM_152683 ENSG00000164306 PRIMPOL CCDC111|MYP22|Primpol1 primase and DNA directed polymerase protein-coding 260-23 chr3 99426604 99426832 + 2 NA Intergenic Intergenic -211876 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 380-19 chr5 135575975 135576210 + 2 NA intron (NM_004887, intron 2 of 3) intron (NM_004887, intron 2 of 3) -3073 NM_001349335 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 226.5-2 chr10 53573397 53573565 + 2 NA Intergenic Intergenic -801781 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 555.5-2 chr14 58312510 58313001 + 2 NA intron (NM_002892, intron 5 of 23) intron (NM_002892, intron 5 of 23) 14200 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 845.5 chr18 64037332 64038122 + 2 NA Intergenic Intergenic -66364 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 457-18 chr3 116866640 116867091 + 2 NA Intergenic L2|LINE|L2 -16498 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 437-34 chr4 184999114 184999491 + 2 NA Intergenic Intergenic -19539 NM_001300781 391723 Hs.531242 NM_001029887 ENSG00000187821 HELT HCM1228|HESL|Mgn|bHLHb44 helt bHLH transcription factor protein-coding 409.5-8 chr14 52306937 52307201 + 2 NA Intergenic L1ME4a|LINE|L1 -7243 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 254-10 chr12 84075888 84076068 + 2 NA Intergenic Intergenic 836821 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 404.5-3 chr1 224149685 224149992 + 2 NA intron (NM_001136115, intron 3 of 3) L2b|LINE|L2 -33402 NM_003676 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 339-18 chr2 108852795 108853116 + 2 NA intron (NM_001351549, intron 12 of 13) intron (NM_001351549, intron 12 of 13) 66184 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 449-8 chr12 13547278 13547527 + 2 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -170657 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 625.5 chr10 85736340 85736773 + 2 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 158825 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 316-15 chr2 8091898 8092150 + 2 NA intron (NR_034135, intron 7 of 8) AluSz6|SINE|Alu -115210 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 496-11 chr19 48024318 48024666 + 2 NA intron (NM_022142, intron 6 of 6) intron (NM_022142, intron 6 of 6) 19587 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 577 chr10 98714962 98715457 + 2 NA intron (NM_021828, intron 5 of 11) L1MB8|LINE|L1 209359 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 286-14 chr17 71872773 71873046 + 2 NA Intergenic Intergenic 153070 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 417-40 chr8 62115512 62115903 + 2 NA Intergenic L1M1|LINE|L1 -133147 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 333-24 chr3 98977623 98977864 + 2 NA Intergenic Intergenic -76048 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 644 chr13 89202244 89202636 + 2 NA Intergenic (TGTATA)n|Simple_repeat|Simple_repeat -32851 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 386-17 chr2 21623211 21623488 + 2 NA Intergenic HAL1|LINE|L1 87303 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 384.5-12 chr19 35120274 35120681 + 2 NA intron (NM_005971, intron 3 of 8) AluJb|SINE|Alu -2223 NR_106947 102466205 NR_106947 ENSG00000284065 MIR6887 hsa-mir-6887 microRNA 6887 ncRNA 219-4 chr10 55294933 55295095 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -304028 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 193.5-17 chr18 64114263 64114430 + 2 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 10255 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 388-6 chr10 84523011 84523375 + 2 NA Intergenic Intergenic 98024 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 359-20 chr19 57291728 57292076 + 2 NA exon (NM_001330622, exon 3 of 3) exon (NM_001330622, exon 3 of 3) 11417 NM_006635 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 455-13 chr18 4079826 4080272 + 2 NA intron (NM_001242761, intron 2 of 11) MER5A|DNA|hAT-Charlie 117696 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 368.5-12 chr13 26338550 26338804 + 2 NA intron (NM_001318368, intron 2 of 12) intron (NM_001318368, intron 2 of 12) 84548 NM_001318368 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 610.5-4 chr15 35786209 35786689 + 2 NA intron (NR_038251, intron 2 of 2) L1MD3|LINE|L1 -140407 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 348.5-8 chr17 40324133 40324307 + 2 NA intron (NM_001145301, intron 1 of 8) intron (NM_001145301, intron 1 of 8) 5975 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 253.5-24 chr3 39583608 39583758 + 2 NA Intergenic L1MCa|LINE|L1 81617 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 641-11 chr5 147435805 147436263 + 2 NA intron (NM_001197294, intron 1 of 13) LTR33|LTR|ERVL 17658 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 475-13 chr18 62867951 62868348 + 2 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 152608 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 269-36 chr9 26011763 26011913 + 2 NA Intergenic Intergenic -54837 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 460-2 chr1 217450485 217450805 + 2 NA intron (NM_018040, intron 8 of 9) intron (NM_018040, intron 8 of 9) 180445 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 176-10 chr3 56588824 56588929 + 2 NA intron (NR_148375, intron 7 of 17) L1M5|LINE|L1 31701 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 397-21 chr2 57752454 57753004 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -154922 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 426-36 chr4 184322774 184323119 + 2 NA Intergenic L1MA6|LINE|L1 31031 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 469 chr1 111565186 111565618 + 2 NA intron (NM_001370216, intron 1 of 7) L2c|LINE|L2 -1399 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 331-38 chr6 13063871 13064159 + 2 NA intron (NM_001322308, intron 4 of 13) intron (NM_001322308, intron 4 of 13) 50461 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 419.5-11 chr2 118094633 118094984 + 2 NA intron (NM_001321331, intron 2 of 5) intron (NM_001321331, intron 2 of 5) 6258 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 273.5-9 chr16 79262718 79263129 + 2 NA Intergenic Intergenic 337814 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 252-23 chr5 84739151 84739383 + 2 NA Intergenic L1ME3B|LINE|L1 -354387 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 803-10 chr4 118893317 118893942 + 2 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 4775 NM_001128933 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 239-30 chrX 96956868 96957186 + 2 NA intron (NM_007309, intron 15 of 26) AluSx|SINE|Alu 73119 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 446.5-12 chr20 57537793 57538216 + 2 NA Intergenic Intergenic -12352 NM_001269040 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 259-3 chr10 105186221 105186416 + 2 NA intron (NM_014978, intron 14 of 26) L2b|LINE|L2 -520102 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 240-45 chr8 84418682 84418899 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 3306 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 456.5-16 chr4 125884970 125885204 + 2 NA Intergenic Intergenic 377828 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 211.5-6 chr12 5256914 5257128 + 2 NA Intergenic L2b|LINE|L2 -13870 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 214-8 chr16 12668761 12668893 + 2 NA intron (NM_001099455, intron 2 of 2) L1MB7|LINE|L1 -51494 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 260-36 chr9 75284576 75284816 + 2 NA Intergenic L1PA13|LINE|L1 196182 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 210-9 chr17 17376103 17376261 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 72809 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 267-9 chr13 94381833 94382091 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 97720 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 171-10 chr2 227316339 227316448 + 2 NA intron (NR_102371, intron 1 of 13) intron (NR_102371, intron 1 of 13) 8771 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 228-7 chr2 17742444 17742664 + 2 NA intron (NM_024624, intron 2 of 26) intron (NM_024624, intron 2 of 26) 11256 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 241 chr1 23854357 23854484 + 2 NA exon (NM_000147, exon 5 of 8) exon (NM_000147, exon 5 of 8) 13949 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 204.5-4 chr1 163686324 163686467 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -263204 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 384.5-13 chr2 51933236 51933472 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -437294 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 275.5-17 chr2 18034935 18035072 + 2 NA Intergenic Ricksha_0|DNA|MULE-MuDR 156336 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 386-6 chr10 75449901 75450203 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 18428 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 382-21 chr2 21014639 21014853 + 2 NA intron (NM_000384, intron 23 of 28) intron (NM_000384, intron 23 of 28) 29327 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 414-4 chr10 27862268 27862612 + 2 NA exon (NM_001312689, exon 13 of 15) exon (NM_001312689, exon 13 of 15) -116621 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 169-13 chr5 25001625 25001779 + 2 NA Intergenic Intergenic -161119 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 321-14 chr2 112034033 112034292 + 2 NA Intergenic Intergenic -21107 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 368-27 chr3 175033231 175033453 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 81900 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 374-28 chr5 21590845 21591165 + 2 NA Intergenic MIRb|SINE|MIR 131525 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 235-26 chr3 184023805 184024036 + 2 NA Intergenic AluSz|SINE|Alu -6036 NR_135125 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 357 chr1 27345317 27345622 + 2 NA exon (NM_001193308, exon 2 of 15) exon (NM_001193308, exon 2 of 15) 3447 NM_001193308 84958 Hs.469175 NM_032872 ENSG00000142765 SYTL1 JFC1|SLP1 synaptotagmin like 1 protein-coding 284.5-32 chr4 172114181 172114335 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -300651 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 267.5-10 chr18 2399130 2399304 + 2 NA Intergenic Intergenic 172288 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 283-31 chr22 48821364 48821621 + 2 NA Intergenic Intergenic 41197 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 385-10 chr14 57047438 57047726 + 2 NA Intergenic Intergenic 221323 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 388-7 chr10 110408109 110408312 + 2 NA Intergenic Intergenic -89697 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 405-8 chr12 9104071 9104453 + 2 NA exon (NM_001347424, exon 11 of 36) exon (NM_001347424, exon 11 of 36) 11967 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 342.5-30 chr7 92204732 92205002 + 2 NA promoter-TSS (NR_031616) promoter-TSS (NR_031616) -769 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 528-5 chr10 25269411 25269719 + 2 NA intron (NM_020752, intron 2 of 10) MIRc|SINE|MIR -93289 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 300.5-36 chr7 52213175 52213466 + 2 NA Intergenic L1PA16|LINE|L1 -820064 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 237.5-25 chr8 61065330 61065595 + 2 NA Intergenic Intergenic -97714 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 282-14 chr18 3856109 3856289 + 2 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) -10841 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 275-24 chr20 23648101 23648421 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -10306 NM_000099 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 117 chr3 129082788 129082877 + 2 NA Intergenic Intergenic 22065 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 251.5-20 chr22 26314201 26314335 + 2 NA intron (NM_001184776, intron 9 of 14) L2b|LINE|L2 -114992 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 219-30 chr6 17052055 17052320 + 2 NA Intergenic AluJo|SINE|Alu -50071 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 377-11 chr16 7084741 7085017 + 2 NA intron (NM_018723, intron 4 of 15) (TCTA)n|Simple_repeat|Simple_repeat -247966 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 380.5-13 chr2 61720240 61720648 + 2 NA Intergenic L1ME4a|LINE|L1 133616 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 137.5-14 chr16 79254637 79254751 + 2 NA Intergenic Intergenic 346043 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 556-9 chr2 106959236 106959672 + 2 NA Intergenic Intergenic -72345 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 485.5-6 chr2 21053676 21053988 + 2 NA Intergenic Intergenic -9759 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 209-6 chr12 126488645 126488819 + 2 NA Intergenic Intergenic -39405 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 277-41 chr6 15982154 15982313 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -146853 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 285-30 chr8 64889369 64889651 + 2 NA Intergenic Intergenic -90773 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 366.5-13 chr16 46505262 46505507 + 2 NA intron (NR_026556, intron 10 of 16) intron (NR_026556, intron 10 of 16) 63713 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 214 chr1 24611568 24611711 + 2 NA Intergenic L1ME3A|LINE|L1 -31663 NR_159385 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 161.5-8 chr16 72487331 72487500 + 2 NA intron (NR_159371, intron 3 of 5) L1ME3Cz|LINE|L1 177555 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 339-9 chr15 62655708 62655891 + 2 NA intron (NM_015059, intron 4 of 55) intron (NM_015059, intron 4 of 55) 8488 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 407 chr1 27181671 27182117 + 2 NA Intergenic AluSx|SINE|Alu -26769 NR_046474 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 379.5-15 chr2 237134534 237134854 + 2 NA Intergenic Intergenic 48805 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 429-31 chr6 57154427 57154837 + 2 NA intron (NM_015555, intron 12 of 13) intron (NM_015555, intron 12 of 13) 17581 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 330-29 chr3 25910609 25910856 + 2 NA Intergenic Intergenic -37037 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 657-6 chr2 65260862 65261361 + 2 NA intron (NM_001005386, intron 7 of 9) Charlie14a|DNA|hAT-Charlie 33416 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 538.5-5 chr12 44212359 44212783 + 2 NA intron (NM_001286213, intron 4 of 6) Tigger7|DNA|TcMar-Tigger 376490 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 230-38 chrX 50505120 50505257 + 2 NA Intergenic Intergenic -34363 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 625.5-3 chr12 106739542 106740060 + 2 NA intron (NM_001206691, intron 15 of 17) intron (NM_001206691, intron 15 of 17) -34881 NR_147134 55188 Hs.131306 NM_018157 ENSG00000111785 RIC8B RIC8|hSyn RIC8 guanine nucleotide exchange factor B protein-coding 275.5-16 chr19 8004861 8005095 + 2 NA intron (NM_001419, intron 1 of 5) intron (NM_001419, intron 1 of 5) 663 NM_001419 1994 Hs.184492 NM_001419 ENSG00000066044 ELAVL1 ELAV1|HUR|Hua|MelG ELAV like RNA binding protein 1 protein-coding 255-7 chr14 99649526 99649729 + 2 NA intron (NM_032425, intron 1 of 7) AluJo|SINE|Alu 4517 NM_032425 84439 Hs.131714 NM_032425 ENSG00000182218 HHIPL1 KIAA1822|UNQ9245 HHIP like 1 protein-coding 389.5-22 chr4 12574979 12575317 + 2 NA Intergenic Intergenic 351697 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 213.5-33 chr7 53355323 53355509 + 2 NA Intergenic L1MEc|LINE|L1 319783 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 673.5-5 chr15 86058015 86058684 + 2 NA Intergenic Intergenic -21271 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 254-37 chr6 90308348 90308517 + 2 NA Intergenic MIRc|SINE|MIR -4310 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 359-19 chr18 67190794 67191052 + 2 NA Intergenic Intergenic 109339 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 349-27 chr4 64799737 64799979 + 2 NA Intergenic L1PA6|LINE|L1 204642 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 870 chr3 34830118 34830727 + 2 NA Intergenic Intergenic 563601 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 363-2 chr1 180785997 180786288 + 2 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) -126755 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 406.5-25 chr7 92133730 92134085 + 2 NA promoter-TSS (NR_122109) promoter-TSS (NR_122109) 570 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 317-29 chr8 126064894 126065126 + 2 NA Intergenic Intergenic -113813 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 520-2 chr10 62814220 62814659 + 2 NA exon (NM_000399, exon 2 of 2) exon (NM_000399, exon 2 of 2) 1927 NM_001136177 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 321-8 chr13 80622021 80622239 + 2 NA Intergenic L2a|LINE|L2 -281004 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 544-6 chr17 66884861 66885414 + 2 NA exon (NM_145811, exon 6 of 6) exon (NM_145811, exon 6 of 6) 50020 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 450-13 chr3 26053691 26054051 + 2 NA Intergenic Intergenic -180176 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 600-14 chr2 145865503 145865967 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -721322 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 506.5-5 chr13 29982876 29983278 + 2 NA Intergenic L1MA5A|LINE|L1 46546 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 509-10 chr2 124090009 124090330 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 64882 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 238.5-30 chr4 95773232 95773456 + 2 NA Intergenic L1PA8A|LINE|L1 -66749 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 467-26 chr8 79236282 79236679 + 2 NA Intergenic Intergenic -95708 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 335-15 chr15 60794398 60794808 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 113034 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 369-32 chr5 1261124 1261460 + 2 NA intron (NR_149162, intron 8 of 12) intron (NR_149162, intron 8 of 12) 33755 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 277-2 chr10 7910564 7910775 + 2 NA intron (NM_031923, intron 2 of 6) AluSx1|SINE|Alu 92164 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 541.5-19 chr7 31069043 31069622 + 2 NA intron (NM_001199637, intron 3 of 13) intron (NM_001199637, intron 3 of 13) 16871 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 327-19 chr17 54827936 54828127 + 2 NA Intergenic MIR3|SINE|MIR -72660 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 470.5-11 chr5 80528053 80528329 + 2 NA intron (NM_205548, intron 5 of 5) L1PA5|LINE|L1 40091 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 166-10 chr4 77411665 77411755 + 2 NA Intergenic Intergenic -100043 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 211-21 chr5 36890889 36891045 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 14198 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 208-21 chr6 39650451 39650593 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 74886 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 209-7 chr12 127708809 127708955 + 2 NA Intergenic Intergenic -53294 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 457-15 chr3 20246700 20247063 + 2 NA Intergenic Intergenic -60648 NM_001199253 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 248-4 chr12 60232965 60233167 + 2 NA Intergenic L1M4|LINE|L1 543696 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 341-29 chr5 130282177 130282401 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 377824 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 393.5-22 chr8 81374680 81375051 + 2 NA Intergenic L2a|LINE|L2 72574 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 693.5-8 chr8 92512504 92513154 + 2 NA Intergenic Intergenic 142665 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 258-20 chr4 67739938 67740128 + 2 NA 3' UTR (NM_000406, exon 3 of 3) 3' UTR (NM_000406, exon 3 of 3) 16053 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 525-7 chr14 92621634 92622035 + 2 NA intron (NM_024832, intron 4 of 9) MER51-int|LTR|ERV1 45600 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 382-23 chr2 78354361 78354587 + 2 NA Intergenic L1MEi|LINE|L1 -63743 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 333-39 chr8 26201381 26201685 + 2 NA Intergenic Intergenic -89975 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 472.5-10 chr2 163702341 163702955 + 2 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 33360 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 357-8 chr11 4498147 4498428 + 2 NA Intergenic L1PREC2|LINE|L1 9408 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 592.5-18 chrX 38576871 38577345 + 2 NA intron (NM_004615, intron 1 of 7) L2|LINE|L2 15630 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 561-20 chr4 110090116 110090565 + 2 NA intron (NM_001130721, intron 3 of 4) intron (NM_001130721, intron 3 of 4) 108275 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 287-36 chr6 10214605 10214819 + 2 NA Intergenic Intergenic -189790 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 351-10 chr14 63114515 63114846 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -69222 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 516-15 chr2 39774507 39774926 + 2 NA intron (NR_135664, intron 1 of 11) intron (NR_135664, intron 1 of 11) 4542 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 240-24 chr2 50516500 50516759 + 2 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) -168873 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 208-12 chr2 88570898 88571091 + 2 NA exon (NM_001313915, exon 14 of 17) exon (NM_001313915, exon 14 of 17) 32274 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 307.5-18 chr18 4488777 4489154 + 2 NA Intergenic Intergenic -33658 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 413-17 chr2 15118312 15118711 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 442823 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 634-10 chr3 121788973 121789490 + 2 NA intron (NM_001023571, intron 8 of 11) MER3|DNA|hAT-Charlie -39464 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 364-22 chr3 27166609 27166851 + 2 NA intron (NM_001304384, intron 8 of 16) AluSx1|SINE|Alu 49793 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 248-20 chr6 24149298 24149422 + 2 NA Intergenic Intergenic 23145 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 263-27 chr9 106596894 106597084 + 2 NA Intergenic L2|LINE|L2 -3939 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 414-35 chr5 155756403 155756668 + 2 NA Intergenic Intergenic -570222 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 400-29 chr8 130561072 130561444 + 2 NA Intergenic Intergenic -117584 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 488-17 chr8 55723736 55724046 + 2 NA Intergenic MER41B|LTR|ERV1 49487 NR_156454 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 261-5 chr11 47306433 47306626 + 2 NA intron (NM_130476, intron 22 of 32) L1M2a|LINE|L1 -34419 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 237.5-23 chr7 52003559 52003707 + 2 NA Intergenic L2a|LINE|L2 -610377 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 291-31 chr8 124215516 124215748 + 2 NA intron (NR_125420, intron 1 of 2) (CTCTG)n|Simple_repeat|Simple_repeat 31766 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 271.5-8 chr10 102051733 102051918 + 2 NA intron (NM_024541, intron 1 of 25) intron (NM_024541, intron 1 of 25) 4348 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 206-6 chr11 47863293 47863456 + 2 NA Intergenic Intergenic -14830 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 242-38 chrX 100113846 100114015 + 2 NA Intergenic L1ME4a|LINE|L1 296343 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 330-42 chr8 20739584 20739790 + 2 NA Intergenic Intergenic -124761 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 441-13 chr17 1980377 1980719 + 2 NA intron (NM_178568, intron 1 of 1) L1ME4a|LINE|L1 -37168 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 296-13 chr15 25124879 25125153 + 2 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 8471 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 350.5-17 chr7 43344631 43344878 + 2 NA intron (NM_001287059, intron 4 of 27) L1MEg|LINE|L1 177788 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 518-21 chr5 160977882 160978321 + 2 NA Intergenic Intergenic -39475 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 320.5 chr1 53416914 53417089 + 2 NA Intergenic MIRb|SINE|MIR 23019 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 461-4 chr13 111221250 111221590 + 2 NA intron (NM_001330597, intron 5 of 18) (AT)n|Simple_repeat|Simple_repeat 18360 NM_001320853 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 501-19 chr5 94500700 94501257 + 2 NA intron (NM_001145678, intron 5 of 20) AluSq2|SINE|Alu 117626 NM_173665 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 205-2 chr1 186973251 186973417 + 2 NA intron (NM_024420, intron 15 of 17) MLT1D|LTR|ERVL-MaLR -119508 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 462.5-18 chr5 30295467 30295875 + 2 NA Intergenic Intergenic 415111 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 368.5-17 chr17 57886394 57886726 + 2 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 16829 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 383-30 chr5 37561388 37561877 + 2 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 182314 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 427.5-2 chr1 203450413 203450626 + 2 NA Intergenic Intergenic -25287 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 234.5-10 chr14 73844302 73844445 + 2 NA Intergenic AluJr|SINE|Alu -7458 NM_001371335 208-15 chr21 30629375 30629560 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -5739 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 352-28 chr3 45690802 45691028 + 2 NA intron (NM_001319073, intron 2 of 20) intron (NM_001319073, intron 2 of 20) 1519 NM_001319071 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 389-3 chr1 99577132 99577327 + 2 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -68884 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 349-14 chr12 114097403 114097609 + 2 NA Intergenic Intergenic -131181 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 295-24 chr2 170768379 170768624 + 2 NA intron (NR_110185, intron 1 of 5) intron (NR_110185, intron 1 of 5) -2181 NR_110644 285141 Hs.443729 NM_001289947 ENSG00000204334 ERICH2 - glutamate rich 2 protein-coding 382.5-21 chr7 154277341 154277570 + 2 NA intron (NM_130797, intron 1 of 25) intron (NM_130797, intron 1 of 25) -27704 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 288-28 chr3 178292434 178292645 + 2 NA Intergenic Intergenic -126662 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 679-3 chr10 127156833 127157585 + 2 NA intron (NM_001039762, intron 4 of 5) L2b|LINE|L2 39382 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 395-10 chr16 74310573 74310789 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack 13867 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 679-8 chr18 9621029 9621583 + 2 NA Intergenic Intergenic 6042 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 352.5-19 chr3 33165329 33165638 + 2 NA intron (NM_015551, intron 4 of 4) L1ME3A|LINE|L1 51525 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 277-48 chr8 126683124 126683268 + 2 NA Intergenic AluSc|SINE|Alu -124718 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 269.5-39 chr4 56585983 56586146 + 2 NA intron (NM_001256475, intron 6 of 8) MLT1G|LTR|ERVL-MaLR 55458 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 419-20 chr21 18043091 18043439 + 2 NA intron (NM_001204178, intron 2 of 5) MER45B|DNA|hAT-Tip100 125925 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 417-38 chr7 48393043 48393300 + 2 NA intron (NM_152701, intron 38 of 61) intron (NM_152701, intron 38 of 61) 221713 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 121-4 chr8 140852301 140852428 + 2 NA intron (NR_148037, intron 6 of 34) L1MD2|LINE|L1 -119711 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 471 chr1 19749828 19750205 + 2 NA intron (NM_001349112, intron 6 of 14) MIR|SINE|MIR 49333 NM_001349115 255104 Hs.466729 NM_181719 ENSG00000162542 TMCO4 - transmembrane and coiled-coil domains 4 protein-coding 466.5-22 chr8 72489493 72489955 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -47501 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 297-33 chr8 9130914 9131198 + 2 NA Intergenic Intergenic 19602 NM_024607 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 349-2 chr1 85636457 85636741 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 55838 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 305-10 chr11 92235123 92235354 + 2 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 10204 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 660-12 chr5 169239932 169240662 + 2 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 23397 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 615-6 chr14 51587693 51588347 + 2 NA intron (NR_047477, intron 1 of 3) intron (NR_047477, intron 1 of 3) 11932 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 308-31 chr6 105575925 105576170 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy -172965 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 331-31 chr22 25635982 25636303 + 2 NA intron (NM_001362778, intron 2 of 19) L1MC4|LINE|L1 71467 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 302-28 chr6 148765859 148766057 + 2 NA intron (NM_005715, intron 1 of 7) L1PB4|LINE|L1 18928 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 390.5-12 chr19 29794350 29794824 + 2 NA Intergenic AluSq|SINE|Alu -17404 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 398-4 chr12 6061395 6061708 + 2 NA intron (NM_000552, intron 13 of 51) intron (NM_000552, intron 13 of 51) -21368 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 307.5-16 chr17 74123982 74124242 + 2 NA Intergenic Intergenic -79566 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 368-30 chr4 46358010 46358369 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 31190 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 429.5-4 chr11 76512368 76512686 + 2 NA intron (NM_001300942, intron 10 of 21) MER75|DNA|PiggyBac 67502 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 310.5-24 chr2 134024801 134025048 + 2 NA Intergenic Intergenic -95011 NM_001371457 378-28 chr7 2775305 2775647 + 2 NA intron (NM_007353, intron 2 of 3) intron (NM_007353, intron 2 of 3) -12336 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 452-28 chr7 29882883 29883144 + 2 NA intron (NM_001080529, intron 4 of 8) intron (NM_001080529, intron 4 of 8) 76459 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 257-10 chr14 40903584 40903784 + 2 NA Intergenic L2a|LINE|L2 -51027 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 214-2 chr1 51787514 51787663 + 2 NA intron (NM_148906, intron 22 of 22) intron (NM_148906, intron 22 of 22) 48814 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 447.5 chr11 31836294 31836737 + 2 NA intron (NR_033971, intron 1 of 2) HAL1b|LINE|L1 9948 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 760.5-5 chr3 83809256 83809710 + 2 NA Intergenic L1M1|LINE|L1 1060092 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 536.5-2 chr1 155798652 155798999 + 2 NA intron (NM_032292, intron 11 of 20) intron (NM_032292, intron 11 of 20) -14993 NR_132767 106633816 NR_132767 SCARNA26B - small Cajal body-specific RNA 26B ncRNA 395-34 chr7 50387652 50387951 + 2 NA intron (NM_001220767, intron 4 of 5) intron (NM_001220767, intron 4 of 5) 62549 NM_001346561 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 309-35 chr5 41480778 41481033 + 2 NA intron (NM_001005473, intron 1 of 2) AluSx1|SINE|Alu 29696 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 402-8 chr11 24747365 24747704 + 2 NA intron (NM_001009909, intron 4 of 11) L1PB1|LINE|L1 250481 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 215.5-37 chr6 65552464 65552633 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 27256 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 386.5-18 chr4 40207810 40208263 + 2 NA intron (NM_001278362, intron 2 of 3) intron (NM_001278362, intron 2 of 3) 11005 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 675-5 chr3 97187916 97188472 + 2 NA intron (NM_001080448, intron 3 of 17) L1ME3Cz|LINE|L1 -251413 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 364-14 chr14 65405836 65406117 + 2 NA Intergenic Intergenic -4616 NM_178156 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 214.5-12 chr2 14443798 14444037 + 2 NA Intergenic Intergenic -42959 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 212.5-6 chr10 111023937 111024078 + 2 NA Intergenic L1MD3|LINE|L1 35081 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 148-7 chr6 15443721 15443852 + 2 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 194931 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 217-12 chr18 73131855 73131987 + 2 NA Intergenic L1ME3|LINE|L1 132577 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 423-7 chr14 59097146 59097378 + 2 NA Intergenic Intergenic -91405 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 309.5-8 chr11 84087347 84087610 + 2 NA intron (NM_001142699, intron 10 of 27) MLT1D|LTR|ERVL-MaLR 185802 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 258.5-17 chr3 144232181 144232333 + 2 NA Intergenic Intergenic 259176 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 267.5 chr1 41365461 41365773 + 2 NA intron (NM_001291281, intron 1 of 2) intron (NM_001291281, intron 1 of 2) 4183 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 264-25 chr6 122279290 122279517 + 2 NA Intergenic Intergenic -120148 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 209.5-5 chr10 118427636 118427743 + 2 NA Intergenic Intergenic 70581 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 298.5-14 chr2 59144468 59144773 + 2 NA Intergenic Intergenic -73088 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 395 chr1 19025794 19026049 + 2 NA Intergenic AluSx1|SINE|Alu -69245 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 326.5-7 chr11 82265711 82265928 + 2 NA intron (NR_120571, intron 3 of 7) L1ME2|LINE|L1 138094 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 410-32 chr8 59809806 59810147 + 2 NA Intergenic Intergenic 471424 NR_135821 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 352-14 chr19 44732958 44733241 + 2 NA Intergenic Intergenic -15609 NM_005178 602 Hs.31210 NM_005178 ENSG00000069399 BCL3 BCL4|D19S37 BCL3 transcription coactivator protein-coding 228.5-11 chr12 74159824 74159976 + 2 NA intron (NR_038300, intron 4 of 6) intron (NR_038300, intron 4 of 6) 132731 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 189.5-26 chr7 39281705 39281815 + 2 NA intron (NM_001370959, intron 4 of 9) L1MA6|LINE|L1 47374 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 567.5-4 chr14 60242146 60242538 + 2 NA Intergenic Charlie17a|DNA|hAT-Charlie -3408 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 388.5-6 chr2 14578884 14579228 + 2 NA Intergenic Intergenic -53661 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 606 chr1 87376906 87377374 + 2 NA Intergenic L1PREC2|LINE|L1 -5485 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 471-29 chr8 108321650 108321966 + 2 NA Intergenic L1MCa|LINE|L1 -73091 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 619-3 chr1 188670265 188670642 + 2 NA Intergenic Intergenic 1226825 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 396.5-14 chr2 46117759 46118063 + 2 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -179496 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 216-20 chr4 31883414 31883560 + 2 NA Intergenic Intergenic -113892 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 369.5-16 chr2 122640212 122640417 + 2 NA Intergenic Intergenic 433167 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 653 chr1 154124072 154124462 + 2 NA intron (NM_001159484, intron 10 of 37) intron (NM_001159484, intron 10 of 37) -19675 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 327.5-8 chr17 58939573 58939807 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 167190 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 216.5-28 chr4 40876045 40876237 + 2 NA intron (NM_173075, intron 11 of 16) intron (NM_173075, intron 11 of 16) -18949 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 575.5 chr14 32059385 32059800 + 2 NA Intergenic Intergenic 17107 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 211.5-18 chr2 72611237 72611413 + 2 NA intron (NR_135774, intron 6 of 19) AluSz6|SINE|Alu 214708 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 345-16 chr19 27692571 27692876 + 2 NA Intergenic HSAT4|Satellite|centr -100708 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 753-11 chr8 57304870 57305516 + 2 NA Intergenic MER50|LTR|ERV1 25650 NR_026772 26138 Hs.159352 NM_015643 ENSG00000215117 LINC00588 C8orf71 long intergenic non-protein coding RNA 588 ncRNA 341-2 chr10 66741282 66741614 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -184588 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 446-10 chr12 9241692 9242061 + 2 NA non-coding (NR_036466, exon 2 of 2) non-coding (NR_036466, exon 2 of 2) 1873 NR_137432 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 288-33 chr5 133067500 133067691 + 2 NA intron (NM_002154, intron 3 of 18) intron (NM_002154, intron 3 of 18) 15582 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 514.5-21 chr8 51392936 51393520 + 2 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 416217 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 289.5-8 chr1 191156577 191156823 + 2 NA Intergenic L1M1|LINE|L1 71798 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 466-24 chr4 78102134 78102797 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 44895 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 383.5-2 chr10 82086365 82086823 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 146326 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 437.5-9 chr5 17410900 17411236 + 2 NA intron (NR_134274, intron 1 of 1) Tigger17a|DNA|TcMar-Tigger 6922 NR_134274 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 584-9 chr2 183689656 183690076 + 2 NA Intergenic L1MA2|LINE|L1 565423 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 343-28 chr6 94700094 94700336 + 2 NA Intergenic MIR|SINE|MIR 877236 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 473-22 chr7 54696828 54697281 + 2 NA Intergenic Intergenic 62157 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 321-33 chr9 82681008 82681211 + 2 NA Intergenic Intergenic 382033 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 257.5-6 chr1 243902982 243903178 + 2 NA Intergenic Intergenic -14322 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 539-9 chr2 120917165 120917536 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 125069 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 275.5-10 chr11 115025467 115025668 + 2 NA Intergenic L1MB3|LINE|L1 -308010 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 661.5-8 chr3 125041430 125041932 + 2 NA intron (NM_020733, intron 1 of 16) L1MB4|LINE|L1 14316 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 362.5-19 chr20 22923762 22924093 + 2 NA Intergenic Intergenic -111493 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 280-8 chr11 81419314 81419471 + 2 NA Intergenic Intergenic 471444 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 478-27 chr6 135529873 135530290 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 32280 NR_152844 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 650-15 chr7 68338834 68339311 + 2 NA Intergenic Intergenic 318819 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 366.5-6 chr12 86578482 86578719 + 2 NA intron (NM_001351285, intron 2 of 8) L1MA1|LINE|L1 166549 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 377-10 chr14 71946959 71947315 + 2 NA intron (NM_001370288, intron 1 of 16) Tigger20a|DNA|TcMar-Tigger 13610 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 521-21 chr8 141659586 141660026 + 2 NA Intergenic Intergenic 126507 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 398-20 chr2 237774050 237774281 + 2 NA intron (NM_001137551, intron 10 of 11) intron (NM_001137551, intron 10 of 11) -24580 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 501.5-8 chr14 78375428 78375992 + 2 NA intron (NR_073547, intron 4 of 20) L2a|LINE|L2 -28009 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 371-25 chr6 38626873 38627152 + 2 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 12917 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 464-5 chr12 130173553 130173870 + 2 NA Intergenic Intergenic 11252 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 413-4 chr1 222598164 222598435 + 2 NA Intergenic Intergenic 8340 NR_110614 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 310-2 chr1 66025989 66026259 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 24594 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 689-4 chr14 48069477 48069874 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -274661 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 338-23 chr3 102446099 102446409 + 2 NA intron (NM_175056, intron 2 of 10) intron (NM_175056, intron 2 of 10) 11239 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 432.5-16 chr4 122720990 122721421 + 2 NA Intergenic L1MEg|LINE|L1 11253 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 350 chr1 86245647 86245909 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -88794 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 475-23 chr5 151827237 151827655 + 2 NA intron (NM_001146040, intron 8 of 8) intron (NM_001146040, intron 8 of 8) -55270 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 307-5 chr10 83269814 83270007 + 2 NA Intergenic Intergenic 407179 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 338-12 chr17 33484599 33484926 + 2 NA intron (NM_001094, intron 1 of 9) MER66B|LTR|ERV1 48998 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 287-17 chr18 56593920 56594098 + 2 NA Intergenic L1MB8|LINE|L1 44583 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 349-11 chr11 90667760 90668016 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -112031 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 186-29 chr9 87289794 87289927 + 2 NA Intergenic Intergenic 141216 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 385.5-38 chr5 15485613 15485827 + 2 NA Intergenic L1MA3|LINE|L1 -14460 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 319-25 chr3 13142159 13142374 + 2 NA Intergenic MIR3|SINE|MIR -68837 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 599.5 chr10 24030023 24030621 + 2 NA intron (NM_001098500, intron 2 of 18) THE1D|LTR|ERVL-MaLR -178469 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 333-8 chr15 61285151 61285651 + 2 NA Intergenic L1ME3E|LINE|L1 -56099 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 352-9 chr17 12551129 12551424 + 2 NA intron (NR_034144, intron 1 of 2) intron (NR_034144, intron 1 of 2) 1308 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 510.5-9 chr5 31234996 31235319 + 2 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 41471 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 202-18 chr4 43638977 43639156 + 2 NA Intergenic L2c|LINE|L2 -146523 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 236.5-28 chr5 2247378 2247565 + 2 NA Intergenic L1MCa|LINE|L1 64730 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 631 chr1 180827579 180827933 + 2 NA intron (NR_137330, intron 9 of 12) intron (NR_137330, intron 9 of 12) -85141 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 359.5-23 chr2 142386691 142386912 + 2 NA Intergenic L2a|LINE|L2 -255100 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 618-11 chr2 140332719 140333117 + 2 NA intron (NM_018557, intron 79 of 90) intron (NM_018557, intron 79 of 90) 253767 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 500.5-17 chr8 36056219 36056832 + 2 NA Intergenic Intergenic -346205 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 304-30 chr4 187823054 187823256 + 2 NA Intergenic AluSq2|SINE|Alu -150514 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 230-29 chr5 4752499 4752699 + 2 NA Intergenic L1MC3|LINE|L1 -20882 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 353-8 chr11 130272577 130272908 + 2 NA intron (NR_163265, intron 1 of 7) L1MB8|LINE|L1 41970 NM_001301099 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 160-7 chr13 54163229 54163394 + 2 NA Intergenic Intergenic -30440 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 945-2 chr11 81246207 81246849 + 2 NA Intergenic Intergenic -483725 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 554-2 chr1 73195633 73196111 + 2 NA Intergenic Intergenic -110298 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 476-21 chr20 47461486 47461979 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -40155 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 233.5-21 chr3 172694004 172694202 + 2 NA intron (NM_001146276, intron 1 of 4) AluJr|SINE|Alu 16964 NM_001146278 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 326.5-16 chr17 62893736 62894116 + 2 NA Intergenic Intergenic -50289 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 336-34 chr3 24638486 24638703 + 2 NA Intergenic L1MC3|LINE|L1 -142886 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 207-15 chr20 21646052 21646212 + 2 NA intron (NR_109878, intron 1 of 4) L1M4|LINE|L1 57453 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 557-15 chr20 54461184 54461607 + 2 NA Intergenic L2a|LINE|L2 -14198 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 339-29 chr5 35530374 35530634 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -87359 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 428-23 chr6 5439142 5439392 + 2 NA intron (NM_006567, intron 4 of 6) L1MEf|LINE|L1 18808 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 554.5-6 chr12 15761420 15761833 + 2 NA intron (NM_004447, intron 1 of 20) L1MA2|LINE|L1 27762 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 283.5-10 chr12 27047024 27047184 + 2 NA Intergenic L1ME1|LINE|L1 24546 NM_004264 9412 Hs.286145 NM_004264 ENSG00000152944 MED21 SRB7|SURB7|hSrb7 mediator complex subunit 21 protein-coding 557-14 chr2 177522918 177523341 + 2 NA intron (NM_003659, intron 18 of 19) intron (NM_003659, intron 18 of 19) 29667 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 329-19 chr20 63071056 63071260 + 2 NA intron (NR_033370, intron 1 of 4) MIR|SINE|MIR -30134 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 418-15 chr20 45562898 45563201 + 2 NA intron (NM_130896, intron 1 of 5) MamTip2|DNA|hAT-Tip100 -15648 NM_020398 57119 Hs.121084 NM_020398 ENSG00000101448 EPPIN CT71|CT72|SPINLW1|WAP7|WFDC7|dJ461P17.2 epididymal peptidase inhibitor protein-coding 520.5-6 chr12 84174824 84175231 + 2 NA Intergenic Intergenic 737772 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 288-37 chr6 139179348 139179612 + 2 NA 3' UTR (NM_016217, exon 4 of 4) 3' UTR (NM_016217, exon 4 of 4) 44400 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 231-5 chr12 115439226 115439398 + 2 NA Intergenic Intergenic 709342 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 291-13 chr19 46626509 46626766 + 2 NA Intergenic Intergenic -1548 NM_000960 5739 Hs.458324 NM_000960 ENSG00000160013 PTGIR IP|PRIPR prostaglandin I2 receptor protein-coding 356.5-22 chr2 102943148 102943599 + 2 NA Intergenic Intergenic 41056 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 310.5-20 chr18 9546051 9546333 + 2 NA TTS (NM_005134) TTS (NM_005134) 68367 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 358-39 chr6 20985150 20985471 + 2 NA intron (NM_017774, intron 10 of 15) AluSq|SINE|Alu 450853 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 397.5-32 chr8 85978297 85978602 + 2 NA Intergenic HAL1|LINE|L1 91219 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 566-13 chr4 42160977 42161360 + 2 NA Intergenic Intergenic -8513 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 685.5-5 chr3 64604430 64605056 + 2 NA intron (NM_001318781, intron 22 of 38) intron (NM_001318781, intron 22 of 38) 43397 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 343-16 chr20 22784675 22784930 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -99458 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 595-3 chr10 130467359 130467722 + 2 NA Intergenic Intergenic 331131 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 300.5-6 chr10 58757648 58757978 + 2 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 42798 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 398-29 chr5 138604010 138604241 + 2 NA Intergenic MIRb|SINE|MIR -28724 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 225.5-3 chr1 72641119 72641450 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -358745 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 303.5-17 chr5 58788285 58788473 + 2 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 205304 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 682.5-5 chr18 75831072 75831590 + 2 NA Intergenic Intergenic -118928 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 317-17 chr22 35144408 35144715 + 2 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 78403 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 372-21 chr2 15991453 15991709 + 2 NA Intergenic Intergenic -49148 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 369-41 chr9 96745284 96745536 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 19589 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 455-15 chr18 41589044 41589415 + 2 NA Intergenic Intergenic -68552 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 521.5-9 chr7 114558118 114558541 + 2 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) -95016 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 244-3 chr10 68715832 68716025 + 2 NA Intergenic MER31-int|LTR|ERV1 -5311 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 123-5 chr2 216501169 216501279 + 2 NA intron (NM_000998, intron 3 of 3) intron (NM_000998, intron 3 of 3) 2380 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 601.5-2 chr10 74866282 74866865 + 2 NA intron (NM_001370144, intron 3 of 15) MER113|DNA|hAT-Charlie 39973 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 260-9 chr14 40078738 40078916 + 2 NA Intergenic MamRep1151|LTR?|LTR? -646327 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 298-9 chr15 48240011 48240164 + 2 NA intron (NM_001184832, intron 9 of 26) (AT)n|Simple_repeat|Simple_repeat 33785 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 226-6 chr11 8754208 8754417 + 2 NA intron (NM_005418, intron 4 of 22) L1MB7|LINE|L1 -14466 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 748-7 chr3 171279232 171279999 + 2 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -172856 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 292-34 chr8 114078039 114078281 + 2 NA Intergenic Intergenic -641221 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 322.5-32 chrX 94211167 94211518 + 2 NA Intergenic Intergenic 537136 NM_001171110 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 164-15 chr9 37582264 37582390 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -5947 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 327.5-31 chr9 35817193 35817380 + 2 NA non-coding (NR_052026, exon 8 of 8) non-coding (NR_052026, exon 8 of 8) -2244 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 212-18 chr3 189578551 189578759 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18091 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 686 chr1 77380467 77380972 + 2 NA intron (NM_012093, intron 6 of 13) L2c|LINE|L2 97632 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 256-18 chr3 88224827 88224994 + 2 NA Intergenic AluSz6|SINE|Alu 74951 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 342-38 chr8 67973019 67973375 + 2 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 21151 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 359.5-2 chr1 40811303 40811576 + 2 NA intron (NM_004700, intron 1 of 13) MER5A|DNA|hAT-Charlie 27652 NM_004700 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 507-4 chr10 70130369 70130677 + 2 NA intron (NM_001198696, intron 1 of 8) L1MB7|LINE|L1 2302 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 291.5-22 chr7 19392557 19392757 + 2 NA Intergenic Intergenic -247236 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 572-9 chr2 196245579 196246033 + 2 NA intron (NM_020760, intron 19 of 28) intron (NM_020760, intron 19 of 28) -14218 NR_110226 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 171-15 chr5 27811035 27811168 + 2 NA Intergenic (ACATATT)n|Simple_repeat|Simple_repeat 338809 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 196-16 chr5 170361696 170361832 + 2 NA intron (NM_001034838, intron 1 of 7) MLT1A0|LTR|ERVL-MaLR 8277 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 604-12 chr2 7272534 7272915 + 2 NA Intergenic Intergenic -148537 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 272.5-7 chr11 46255219 46255417 + 2 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat -22344 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 358-42 chr6 152172129 152172397 + 2 NA intron (NM_182961, intron 130 of 145) L1MB8|LINE|L1 -3976 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 221-23 chr5 111957979 111958187 + 2 NA intron (NR_046678, intron 2 of 3) L1ME3A|LINE|L1 18849 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 610.5-2 chr13 91584226 91584563 + 2 NA intron (NM_004466, intron 2 of 7) L1ME3A|LINE|L1 185773 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 288-18 chr2 39445976 39446162 + 2 NA intron (NR_037875, intron 1 of 5) intron (NR_037875, intron 1 of 5) 8653 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 277.5-19 chr2 197010318 197010513 + 2 NA intron (NM_001367496, intron 18 of 27) intron (NM_001367496, intron 18 of 27) -83708 NM_001321099 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 324.5-16 chr14 64409097 64409610 + 2 NA intron (NM_005956, intron 2 of 27) L1M6|LINE|L1 21000 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 392-36 chr7 123021444 123021711 + 2 NA Intergenic L1MB3|LINE|L1 -25877 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 412-30 chr8 11309434 11309757 + 2 NA exon (NM_015458, exon 6 of 10).2 exon (NM_015458, exon 6 of 10).2 -21391 NM_054028 83650 Hs.458397 NM_054028 ENSG00000177710 SLC35G5 AMAC|AMAC1L2 solute carrier family 35 member G5 protein-coding 277-46 chr8 35409799 35410020 + 2 NA intron (NM_080872, intron 1 of 16) L1ME1|LINE|L1 -134483 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 367.5-19 chr22 25028576 25028896 + 2 NA exon (NM_001145206, exon 1 of 11) exon (NM_001145206, exon 1 of 11) 762 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 302-35 chr8 129200747 129201080 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack 40327 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 259-21 chr5 11203081 11203328 + 2 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 385713 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 165.5-7 chr12 118310341 118310432 + 2 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 49319 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 265-23 chr2 218221036 218221295 + 2 NA intron (NM_152862, intron 2 of 10) intron (NM_152862, intron 2 of 10) 3768 NM_005731 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 482.5-3 chr12 44448654 44448962 + 2 NA Intergenic Intergenic 426853 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 394-6 chr12 39048854 39049143 + 2 NA Intergenic AluSq10|SINE|Alu -143407 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 360.5-3 chr11 114087479 114087789 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 24423 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 173-2 chr10 53610910 53611042 + 2 NA Intergenic L1MA4A|LINE|L1 -839276 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 305.5-22 chr3 186882189 186882374 + 2 NA Intergenic L1MB8|LINE|L1 -20913 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 306.5-23 chr3 69990468 69990783 + 2 NA Intergenic Intergenic -9119 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 337.5-10 chr18 53907473 53907641 + 2 NA Intergenic Intergenic 314855 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 353.5-22 chr5 131674700 131675001 + 2 NA intron (NM_133372, intron 13 of 17) intron (NM_133372, intron 13 of 17) -39621 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 263-22 chr4 188842070 188842325 + 2 NA Intergenic Intergenic 65540 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 533-14 chr17 75459105 75459469 + 2 NA intron (NM_014738, intron 1 of 31) intron (NM_014738, intron 1 of 31) 2652 NM_001321149 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 287-38 chr6 41420929 41421159 + 2 NA Intergenic MIR|SINE|MIR -81400 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 379-30 chr22 33969910 33970278 + 2 NA Intergenic Intergenic -47206 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 174-26 chr5 153607760 153607875 + 2 NA intron (NM_001258020, intron 3 of 16) L1ME3|LINE|L1 115645 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 474.5-15 chr7 49159377 49159968 + 2 NA Intergenic Intergenic 235125 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 376.5-4 chr10 34191076 34191273 + 2 NA intron (NM_001184789, intron 20 of 22) L2c|LINE|L2 -418494 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 755 chr11 125856876 125857574 + 2 NA Intergenic L1M1|LINE|L1 23909 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 681-9 chr7 12639198 12639676 + 2 NA intron (NR_156701, intron 10 of 14) intron (NR_156701, intron 10 of 14) -47390 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 423-29 chr4 152751022 152751443 + 2 NA Intergenic MER52A|LTR|ERV1 28498 NM_145720 201798 Hs.301243 NM_145720 ENSG00000169989 TIGD4 - tigger transposable element derived 4 protein-coding 322-3 chr1 221639896 221640341 + 2 NA Intergenic Intergenic 96782 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 511.5-3 chr1 234856591 234856962 + 2 NA Intergenic L3|LINE|CR1 -96720 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 495-22 chr8 123792828 123793150 + 2 NA intron (NM_144963, intron 15 of 23) MER92B|LTR|ERV1 24550 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 262.5-30 chr9 125169807 125169997 + 2 NA intron (NM_002721, intron 2 of 6) intron (NM_002721, intron 2 of 6) 19901 NM_002721 5537 Hs.744091 NM_002721 ENSG00000119414 PPP6C PP6|PP6C protein phosphatase 6 catalytic subunit protein-coding 281-20 chr17 75301908 75302072 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -12541 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 331-4 chr1 206698315 206698712 + 2 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) 13608 NM_032960 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 312.5-32 chr9 27005720 27005876 + 2 NA promoter-TSS (NM_022901) promoter-TSS (NM_022901) -126 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 343.5-4 chr10 63999068 63999443 + 2 NA Intergenic L1PA13|LINE|L1 -477365 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 459-5 chr11 91494831 91495253 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -625840 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 332-5 chr12 75017277 75017552 + 2 NA Intergenic MER61-int|LTR|ERV1 192334 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 247-32 chrX 24887648 24887969 + 2 NA intron (NM_016937, intron 34 of 36) intron (NM_016937, intron 34 of 36) 128157 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 697.5-3 chr15 62167413 62167946 + 2 NA Intergenic Intergenic -2394 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 303-7 chr10 82793443 82793703 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -560653 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 374.5-6 chr12 40059527 40059951 + 2 NA intron (NM_052885, intron 1 of 9) MER21A|LTR|ERVL 46342 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 687.5-2 chr14 42274844 42275242 + 2 NA Intergenic MER57-int|LTR|ERV1 668187 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 484-18 chr18 6687871 6688246 + 2 NA Intergenic L1MC1|LINE|L1 -41658 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 358-20 chr15 97121699 97121934 + 2 NA Intergenic Intergenic 338381 NR_158223 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 271-12 chr18 51242108 51242350 + 2 NA Intergenic Intergenic -44548 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 426-31 chr3 180838660 180839001 + 2 NA intron (NR_109986, intron 2 of 13) AluJr|SINE|Alu 31348 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 269.5-35 chr3 187333880 187334097 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -34397 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 306-32 chr7 97635777 97636013 + 2 NA Intergenic Intergenic -96191 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 362-7 chr12 100749385 100749681 + 2 NA Intergenic Intergenic -45243 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 485.5-22 chr7 112816874 112817238 + 2 NA Intergenic Intergenic -26633 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 252-22 chr5 84177069 84177209 + 2 NA intron (NM_001278642, intron 3 of 9) L1MC2|LINE|L1 207728 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 288.5-29 chr3 105640365 105640518 + 2 NA Intergenic L1MEd|LINE|L1 227150 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 505-18 chr3 37582665 37583007 + 2 NA intron (NM_002207, intron 15 of 27) L4_A_Mam|LINE|RTE-X 130695 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 773-2 chr3 22669128 22669908 + 2 NA Intergenic L1MC5a|LINE|L1 533060 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 403.5-3 chr10 82530806 82531007 + 2 NA intron (NR_163253, intron 3 of 10) BLACKJACK|DNA|hAT-Blackjack -297986 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 261-25 chr6 55201505 55201653 + 2 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 95119 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 556.5-19 chr6 128702177 128702510 + 2 NA Intergenic L1MC4|LINE|L1 -180795 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 339.5-28 chr6 165382545 165382910 + 2 NA intron (NM_006661, intron 18 of 22) intron (NM_006661, intron 18 of 22) -73122 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 313-19 chr2 24418611 24418895 + 2 NA Intergenic Intergenic -58217 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 508.5-21 chr6 90071063 90071378 + 2 NA intron (NM_021813, intron 5 of 8) L3|LINE|CR1 176751 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 370-37 chr9 116858269 116858649 + 2 NA intron (NM_014010, intron 10 of 21) MamRep564|Unknown|Unknown 171154 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 473.5-7 chr18 40282277 40282719 + 2 NA Intergenic L1MCc|LINE|L1 216212 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 444-13 chr17 78911235 78911497 + 2 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) -8165 NM_001243540 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 241.5-28 chr5 31978030 31978150 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -41931 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 282-30 chrX 73819580 73819809 + 2 NA TTS (NR_001564) TTS (NR_001564) 27489 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 552-12 chr2 14419866 14420207 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -19078 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 422.5-23 chr8 82045794 82046260 + 2 NA Intergenic (TTTCC)n|Simple_repeat|Simple_repeat -203741 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 666-12 chr7 34192140 34192607 + 2 NA Intergenic Intergenic 286834 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 329-14 chr17 57850784 57850984 + 2 NA promoter-TSS (NM_016070) promoter-TSS (NM_016070) -840 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 510 chr10 13842515 13842932 + 2 NA intron (NM_001318336, intron 2 of 23) Charlie18a|DNA|hAT-Charlie 129173 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 146-5 chr16 64146607 64146717 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 975401 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 304-35 chr7 53481595 53481812 + 2 NA Intergenic L1MEd|LINE|L1 330228 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 451-22 chr7 41438490 41439005 + 2 NA Intergenic Intergenic -255172 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 399-20 chr2 174475448 174475870 + 2 NA intron (NM_001267051, intron 2 of 14) intron (NM_001267051, intron 2 of 14) 11370 NM_152529 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 366-13 chr20 59026228 59026612 + 2 NA 3' UTR (NM_030773, exon 4 of 4) 3' UTR (NM_030773, exon 4 of 4) 5915 NM_006886 514 Hs.177530 NM_006886 ENSG00000124172 ATP5F1E ATP5E|ATPE|MC5DN3 ATP synthase F1 subunit epsilon protein-coding 278-12 chr17 42392572 42392754 + 2 NA Intergenic Intergenic -4168 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 267-3 chr1 212165160 212165459 + 2 NA Intergenic L1MEc|LINE|L1 69427 NR_125982 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 311-22 chr21 30799747 30800024 + 2 NA Intergenic L1ME1|LINE|L1 13389 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 482-16 chr4 62991161 62991446 + 2 NA Intergenic L1MB8|LINE|L1 -829538 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 390.5-10 chr17 52953862 52954187 + 2 NA Intergenic Intergenic -31481 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 317.5-33 chr7 37826515 37826852 + 2 NA Intergenic Intergenic -21914 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 317.5-27 chr5 10558915 10559228 + 2 NA Intergenic Intergenic -4999 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 379-12 chr11 95812660 95812925 + 2 NA intron (NM_014679, intron 2 of 10) intron (NM_014679, intron 2 of 10) 22294 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 364-28 chr5 100729094 100729467 + 2 NA Intergenic Intergenic 87285 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 304-21 chr20 18218626 18218858 + 2 NA Intergenic Intergenic -69486 NM_001283003 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 277-26 chr2 107608520 107608791 + 2 NA Intergenic Intergenic 79236 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 401-26 chr4 61507073 61507446 + 2 NA intron (NM_001322246, intron 3 of 25) intron (NM_001322246, intron 3 of 25) 305087 NM_001371342 290-25 chr4 144760310 144760503 + 2 NA Intergenic L1PB3|LINE|L1 114250 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 288-6 chr11 128394625 128394972 + 2 NA Intergenic Intergenic 127512 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 268-27 chr8 91422109 91422298 + 2 NA Intergenic Intergenic 172884 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 148.5-17 chr22 39871438 39871524 + 2 NA intron (NM_152512, intron 2 of 6) MIRb|SINE|MIR 22279 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 460.5-34 chr8 90163839 90164342 + 2 NA Intergenic Intergenic -57398 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 156-9 chr17 69735442 69735527 + 2 NA intron (NR_109972, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat 141497 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 488-15 chr5 30135443 30135757 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 255040 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 256-8 chr14 36571812 36571953 + 2 NA Intergenic L1MA9|LINE|L1 10732 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 290-12 chr18 1652738 1652933 + 2 NA Intergenic Intergenic -293206 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 545.5-10 chr3 193945982 193946477 + 2 NA Intergenic Intergenic 48009 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 399-40 chr9 28143134 28143492 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -569447 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 385.5-24 chr2 105057237 105057499 + 2 NA intron (NM_182640, intron 2 of 10) intron (NM_182640, intron 2 of 10) -18872 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 258-11 chr2 48673857 48674022 + 2 NA intron (NM_001198593, intron 10 of 10) MER39|LTR|ERV1 56083 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 224-3 chr10 38035998 38036238 + 2 NA intron (NM_001278179, intron 5 of 5) L1MC|LINE|L1 25443 NM_001278176 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 321.5-23 chr3 177920436 177920629 + 2 NA Intergenic MIR3|SINE|MIR 103667 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 396.5-27 chr5 22519140 22519425 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -305432 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 279-12 chr15 59557113 59557284 + 2 NA Intergenic MIR3|SINE|MIR -54585 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 408.5-19 chr5 37640187 37640553 + 2 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 194452 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 397-22 chr3 39584098 39584458 + 2 NA Intergenic LTR34|LTR|ERV1 82212 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 180-10 chr4_KI270787v1_alt 68652 68816 + 2 NA NA Intergenic NA NA 455-33 chr7 137342975 137343409 + 2 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) 541 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 385-22 chr3 19417931 19418309 + 2 NA intron (NM_144633, intron 7 of 15) L2b|LINE|L2 -103189 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 222.5-22 chr4 104487855 104487982 + 2 NA intron (NR_132741, intron 2 of 2) intron (NR_132741, intron 2 of 2) -3047 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 414-22 chr20 10600153 10600484 + 2 NA intron (NM_001009608, intron 5 of 7) intron (NM_001009608, intron 5 of 7) 49377 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 246-2 chr1 74058198 74058476 + 2 NA intron (NM_001105659, intron 6 of 7) L1MA5|LINE|L1 139839 NM_001105659 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 513-13 chr17 78009214 78009629 + 2 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 5184 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 335-32 chr2 225094364 225094552 + 2 NA Intergenic L1MA5A|LINE|L1 -51990 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 461.5-7 chr15 58175568 58175836 + 2 NA intron (NM_001320635, intron 4 of 4) intron (NM_001320635, intron 4 of 4) 37321 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 304-36 chr7 68419582 68419967 + 2 NA Intergenic Intergenic 399521 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 335-53 chr8 141908681 141908981 + 2 NA Intergenic Intergenic -122518 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 218-23 chr21 27653858 27654041 + 2 NA Intergenic L1PA14|LINE|L1 -68430 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 418.5-2 chr1 58652481 58652809 + 2 NA Intergenic Intergenic 47417 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 217-15 chr2 57996847 57996977 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -49730 NM_001130480 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 413-6 chr10 56581805 56582223 + 2 NA Intergenic Intergenic -220741 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 324.5-17 chr15 64075507 64075690 + 2 NA intron (NM_001014812, intron 2 of 3) intron (NM_001014812, intron 2 of 3) 18240 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 397-13 chr16 22693984 22694382 + 2 NA Intergenic Intergenic -119979 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 551-19 chr2 147568421 147569007 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -275803 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 355-36 chr6 151922847 151923117 + 2 NA intron (NM_001122741, intron 4 of 8) L1MC3|LINE|L1 113875 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 273-8 chr12 66989143 66989401 + 2 NA Intergenic Intergenic 107012 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 487-26 chr3 112094688 112095094 + 2 NA intron (NM_024616, intron 2 of 5) intron (NM_024616, intron 2 of 5) 8556 NM_024616 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 613 chr1 102868031 102868470 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 240246 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 240-16 chr14 84659788 84659953 + 2 NA Intergenic MIRb|SINE|MIR -612062 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 348.5-16 chr3 163360135 163360323 + 2 NA Intergenic L1ME1|LINE|L1 -56928 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 452-16 chr2 125641329 125641650 + 2 NA Intergenic Intergenic 476496 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 279-14 chr18 3846380 3846604 + 2 NA intron (NM_001242761, intron 4 of 11) L1MB7|LINE|L1 -1134 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 341.5-28 chr6 36603801 36604112 + 2 NA non-coding (NR_036610, exon 7 of 7) non-coding (NR_036610, exon 7 of 7) 9594 NM_003017 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 535.5-7 chr17 59643241 59643614 + 2 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 23532 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 462-36 chr6 112573909 112574296 + 2 NA Intergenic LTR78|LTR|ERV1 226772 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 529.5-11 chr16 77178639 77178982 + 2 NA Intergenic LTR37B|LTR|ERV1 -12380 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 482-20 chr8 118779677 118779964 + 2 NA Intergenic Intergenic -157857 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 343.5-2 chr1 55309204 55309522 + 2 NA Intergenic MIR|SINE|MIR 83722 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 478-23 chr4 3719680 3720062 + 2 NA Intergenic Intergenic -42016 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LINC02171 - long intergenic non-protein coding RNA 2171 ncRNA 377.5-6 chr14 63233097 63233507 + 2 NA intron (NM_020663, intron 1 of 4) L1MB8|LINE|L1 28859 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 218-18 chr18 65064230 65064378 + 2 NA Intergenic Intergenic -685948 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 390-21 chr3 39855743 39856025 + 2 NA intron (NM_001284424, intron 1 of 15) L1PBa|LINE|L1 46224 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 299.5-30 chr6 109322402 109322600 + 2 NA intron (NR_152435, intron 35 of 45) Tigger13a|DNA|TcMar-Tigger 59238 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 172-15 chr8 85615274 85615454 + 2 NA Intergenic Intergenic 40312 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 460-10 chr18 2944888 2945255 + 2 NA non-coding (NR_026659, exon 1 of 1) non-coding (NR_026659, exon 1 of 1) 1552 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 394-22 chr4 93551051 93551382 + 2 NA intron (NM_001286838, intron 12 of 14) L2a|LINE|L2 -277537 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 564-14 chr2 210721638 210722072 + 2 NA Intergenic Intergenic 104284 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 341.5-2 chr1 209789729 209790027 + 2 NA intron (NM_006147, intron 7 of 8) MER3|DNA|hAT-Charlie -5319 NM_152485 148304 Hs.497642 NM_152485 ENSG00000162757 C1orf74 URLC4 chromosome 1 open reading frame 74 protein-coding 286-5 chr11 115478256 115478608 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 25983 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 431-14 chr19 45388628 45389072 + 2 NA intron (NM_006663, intron 8 of 12) AluSz|SINE|Alu 16219 NM_006663 10848 Hs.466937 NM_006663 ENSG00000104881 PPP1R13L IASPP|NKIP1|RAI|RAI4 protein phosphatase 1 regulatory subunit 13 like protein-coding 520.5-14 chr5 26316065 26316449 + 2 NA Intergenic L1PB3|LINE|L1 722329 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 313.5-42 chr8 110281161 110281500 + 2 NA Intergenic L1ME4c|LINE|L1 -305559 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 499.5-6 chr17 53368516 53369048 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat 383277 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 279-33 chr7 37333261 37333475 + 2 NA intron (NM_001206480, intron 2 of 21) intron (NM_001206480, intron 2 of 21) 20300 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 183-24 chr8 113994043 113994194 + 2 NA Intergenic L2|LINE|L2 -557179 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 374-10 chr17 641204 641484 + 2 NA intron (NM_001366254, intron 7 of 19).2 intron (NM_001366254, intron 7 of 19).2 73495 NM_001366253 55275 Hs.461819 NM_018289 ENSG00000141252 VPS53 HCCS1|PCH2E|hVps53L|pp13624 VPS53 subunit of GARP complex protein-coding 370.5-13 chr2 30768027 30768485 + 2 NA intron (NM_144575, intron 5 of 22) MLT1M|LTR|ERVL-MaLR 39190 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 459-10 chr2 16926543 16926797 + 2 NA Intergenic Intergenic -260836 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 247-19 chr5 22791437 22791662 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 61795 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 172.5 chr1 66746991 66747106 + 2 NA 3' UTR (NM_001350217, exon 25 of 25) 3' UTR (NM_001350217, exon 25 of 25) -5411 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 202-28 chr8 137605423 137605608 + 2 NA Intergenic Intergenic -191927 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 620.5-4 chr22 33272055 33272569 + 2 NA TTS (NM_004737) TTS (NM_004737) 163783 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 143-2 chr17 18082768 18082914 + 2 NA Intergenic L1MC4|LINE|L1 -5107 NM_001388 1819 Hs.78582 NM_001388 ENSG00000108591 DRG2 - developmentally regulated GTP binding protein 2 protein-coding 622.5-6 chr7 61946151 61946599 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1357681 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 286-2 chr10 49818207 49818457 + 2 NA TTS (NM_001324381) TTS (NM_001324381) -55953 NM_001143997 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 396-30 chr7 23449180 23449553 + 2 NA intron (NM_006547, intron 2 of 14) AluY|SINE|Alu 21125 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 417-36 chr6 152226876 152227194 + 2 NA intron (NM_182961, intron 115 of 145) intron (NM_182961, intron 115 of 145) -41657 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 179-11 chr2 183899712 183899801 + 2 NA Intergenic Intergenic -479219 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 266.5-17 chr2 210694085 210694369 + 2 NA Intergenic Intergenic 76656 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 616 chr1 87862970 87863386 + 2 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -491523 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 552.5-21 chr8 142660132 142660443 + 2 NA 3' UTR (NM_003724, exon 2 of 2) 3' UTR (NM_003724, exon 2 of 2) 9680 NM_001077527 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 554-28 chr8 127263205 127263541 + 2 NA intron (NR_117099, intron 1 of 3) L1MA7|LINE|L1 18736 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 543.5-7 chr17 62752762 62753222 + 2 NA intron (NM_001288779, intron 4 of 11) L2c|LINE|L2 46786 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 523.5-10 chr20 3919387 3919763 + 2 NA intron (NM_001324193, intron 6 of 6) intron (NM_001324193, intron 6 of 6) -2012 NR_031722 100302282 NR_031722 ENSG00000283320 MIR103B2 MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as microRNA 103b-2 ncRNA 143-4 chr4 85008838 85008951 + 2 NA TTS (NR_152771) TTS (NR_152771) 41410 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 434-25 chr8 11984831 11985175 + 2 NA TTS (NM_001033017) TTS (NM_001033017) 2682 NM_001033017 613209 Hs.558284 NM_001033017 ENSG00000205883 DEFB135 DEFB136 defensin beta 135 protein-coding 528.5-17 chr8 118764952 118765473 + 2 NA Intergenic Intergenic -143249 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 330-14 chr14 77273195 77273376 + 2 NA Intergenic Intergenic -1973 NM_021257 58157 Hs.274363 NM_021257 ENSG00000165553 NGB - neuroglobin protein-coding 484-9 chr10 107924718 107925128 + 2 NA intron (NR_125760, intron 4 of 4) L1M4b|LINE|L1 144370 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 384.5-27 chr9 107185459 107185806 + 2 NA Intergenic L1MA5|LINE|L1 -82644 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 258-3 chr11 30882614 30882828 + 2 NA intron (NM_001367979, intron 36 of 38) L1ME4a|LINE|L1 109965 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 261.5-34 chr8 89441711 89441863 + 2 NA Intergenic L1PA16|LINE|L1 315924 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 289-19 chr16 3963446 3963706 + 2 NA 3' UTR (NM_001116, exon 11 of 11) 3' UTR (NM_001116, exon 11 of 11) -13132 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 457-27 chr6 120243702 120244039 + 2 NA Intergenic MIR|SINE|MIR 228691 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 205-12 chr14 61562179 61562351 + 2 NA non-coding (NR_110416, exon 4 of 5) non-coding (NR_110416, exon 4 of 5) 7929 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 417.5-11 chr22 29357336 29357828 + 2 NA intron (NM_001166019, intron 5 of 20) AluSx|SINE|Alu -24324 NR_003686 100113380 NR_003686 ENSG00000239127 SNORD125 - small nucleolar RNA, C/D box 125 snoRNA 233.5-39 chr8 130899998 130900170 + 2 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 140825 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 477-19 chr6 55849303 55849841 + 2 NA intron (NM_001329754, intron 1 of 5) L2a|LINE|L2 26018 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 483-32 chr7 16919278 16919728 + 2 NA Intergenic L1MB5|LINE|L1 -37520 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 423.5-20 chr2 119593718 119594198 + 2 NA intron (NR_073132, intron 7 of 24) MSTB|LTR|ERVL-MaLR 49509 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 214.5-13 chr2 44094669 44094798 + 2 NA Intergenic MER20|DNA|hAT-Charlie -74070 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 393-36 chr9 30519942 30520395 + 2 NA Intergenic L1MDb|LINE|L1 -111714 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 355-34 chr6 47782718 47783009 + 2 NA intron (NM_181744, intron 1 of 6) MER33|DNA|hAT-Charlie 824 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 496-16 chr2 71553086 71553489 + 2 NA intron (NM_001130985, intron 20 of 54) intron (NM_001130985, intron 20 of 54) 86588 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 417.5-20 chr6 75933072 75933358 + 2 NA intron (NM_001563, intron 14 of 16) intron (NM_001563, intron 14 of 16) 139447 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 318.5-21 chr3 145108973 145109290 + 2 NA Intergenic L1MC1|LINE|L1 960054 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 176 chr10 52571957 52572074 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -101482 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 385.5-40 chr7 81440501 81440776 + 2 NA Intergenic Intergenic 121181 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 229-12 chr14 50012706 50012826 + 2 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -5246 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 569-8 chr18 31270423 31270796 + 2 NA Intergenic MER57A1|LTR|ERV1 -47551 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 409-4 chr10 115967540 115967914 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 227062 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 558.5-5 chr11 126410526 126410924 + 2 NA intron (NM_001348398, intron 9 of 10) L2c|LINE|L2 4638 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 312-4 chr11 36609175 36609438 + 2 NA intron (NM_001276724, intron 1 of 5) L3|LINE|CR1 -11027 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 272-20 chr3 20130670 20130841 + 2 NA intron (NM_003884, intron 11 of 17) intron (NM_003884, intron 11 of 17) -6810 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 464.5-2 chr1 57880630 57880972 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) 20220 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 400-14 chr17 33656198 33656634 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -122656 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 414.5-19 chr4 60218515 60218967 + 2 NA Intergenic MIR|SINE|MIR -703878 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 749-2 chr20 7278951 7279505 + 2 NA Intergenic Intergenic -25026 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 395.5-23 chr3 106414136 106414506 + 2 NA Intergenic Intergenic -544920 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 230.5-17 chr13 28492647 28492774 + 2 NA intron (NM_002019, intron 1 of 29) intron (NM_002019, intron 1 of 29) 2418 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 265-8 chr11 113779837 113780027 + 2 NA exon (NM_001101389, exon 1 of 1) exon (NM_001101389, exon 1 of 1) 136 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 235.5-8 chr13 40293457 40293641 + 2 NA Intergenic Intergenic -73047 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 140 chr1 58066395 58066467 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 184072 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 165-8 chr5 121867277 121867367 + 2 NA Intergenic Intergenic 15440 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 310-35 chr5 155266529 155266718 + 2 NA Intergenic Intergenic 252868 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 463-11 chr15 63791726 63792167 + 2 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 42002 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 440-25 chr3 74607894 74608150 + 2 NA Intergenic L1MC4a|LINE|L1 -86882 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 611-11 chr8 47780568 47781171 + 2 NA intron (NM_001081640, intron 79 of 84) AluSc|SINE|Alu -42705 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 311-4 chr1 195713326 195713665 + 2 NA Intergenic L1ME5|LINE|L1 375220 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 414-41 chr8 14256786 14257144 + 2 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 596545 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 813-8 chr8 61971697 61972340 + 2 NA Intergenic Intergenic 82179 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 239-24 chr5 57950276 57950475 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -51213 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 266-39 chr6 111981810 111982046 + 2 NA Intergenic MamRep38|DNA|hAT -72147 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 298-3 chr1 207326172 207326426 + 2 NA intron (NM_001114752, intron 4 of 10) intron (NM_001114752, intron 4 of 10) 4621 NR_125349 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 623 chr10 120855677 120856100 + 2 NA intron (NM_018117, intron 2 of 28) L1MEf|LINE|L1 4526 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 226 chr1 35555427 35555557 + 2 NA intron (NM_024874, intron 1 of 20) intron (NM_024874, intron 1 of 20) 1911 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 273-6 chr12 24312429 24312663 + 2 NA intron (NM_152989, intron 3 of 17) L2a|LINE|L2 89275 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 319-5 chr11 112100584 112101009 + 2 NA Intergenic L1MEd|LINE|L1 13923 NM_001276506 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 283-48 chr9 36510562 36510736 + 2 NA Intergenic Intergenic -62213 NM_001256690 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 316-36 chr5 160451708 160451891 + 2 NA Intergenic AluJr|SINE|Alu -16452 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 375-19 chr21 32657571 32657842 + 2 NA intron (NM_203446, intron 19 of 32) intron (NM_203446, intron 19 of 32) -44835 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 235-23 chr2 170944813 170944967 + 2 NA intron (NM_015530, intron 1 of 9) intron (NM_015530, intron 1 of 9) 15637 NM_015530 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 269-17 chr17 42669728 42669957 + 2 NA intron (NR_073573, intron 11 of 12) intron (NR_073573, intron 11 of 12) 6169 NR_073574 79990 Hs.632251 NM_024927 ENSG00000068137 PLEKHH3 - pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding 168-11 chr3 23145866 23146033 + 2 NA Intergenic L1ME1|LINE|L1 56629 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 556-11 chr3 135922155 135922576 + 2 NA Intergenic AluJb|SINE|Alu -43363 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 366-4 chr12 81078789 81079017 + 2 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 824 NM_001330243 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 332-28 chr3 183547885 183548149 + 2 NA promoter-TSS (NR_046687) promoter-TSS (NR_046687) -718 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 655.5-11 chr6 53482188 53482726 + 2 NA Intergenic FLAM_A|SINE|Alu 62644 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 256-24 chr5 14345667 14346001 + 2 NA intron (NM_007118, intron 11 of 56) AluSz|SINE|Alu -118149 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 461-16 chr3 56454176 56454506 + 2 NA intron (NR_132749, intron 1 of 17) intron (NR_132749, intron 1 of 17) 14126 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 209.5-20 chr2 213055733 213055837 + 2 NA intron (NM_001371277, intron 4 of 6) MIR3|SINE|MIR 94652 NM_001371275 150-6 chr5 21440028 21440110 + 2 NA Intergenic Intergenic -19411 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 356-9 chr12 70690667 70690946 + 2 NA intron (NM_130846, intron 4 of 9) intron (NM_130846, intron 4 of 9) -53377 NM_001330204 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 387-20 chr22 25920657 25921025 + 2 NA intron (NM_001318245, intron 33 of 43) intron (NM_001318245, intron 33 of 43) 178653 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 393-4 chr11 29127436 29127671 + 2 NA Intergenic Charlie9|DNA|hAT-Charlie -466860 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 446-32 chr6 151477233 151477662 + 2 NA Intergenic AluJo|SINE|Alu -16570 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 282-12 chr15 61019989 61020198 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 209209 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 491-5 chr10 83805318 83805899 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -128519 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 488-6 chr2 20476277 20476718 + 2 NA Intergenic Intergenic 25027 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 214-13 chr2 212501670 212501893 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 36847 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 458.5-11 chr20 46422449 46422870 + 2 NA intron (NR_146919, intron 1 of 3) AluSz|SINE|Alu -15608 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 246-5 chr12 80020423 80020565 + 2 NA Intergenic Intergenic -79043 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 225.5-21 chr2 127698964 127699146 + 2 NA Intergenic Intergenic -2442 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 225-23 chr2 80622664 80622838 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 309372 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 475-3 chr10 125308502 125308965 + 2 NA Intergenic L1MEj|LINE|L1 -147703 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 423-12 chr15 83847011 83847348 + 2 NA intron (NM_207517, intron 7 of 29) intron (NM_207517, intron 7 of 29) 193056 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 667 chr16 89288883 89289319 + 2 NA intron (NR_045839, intron 8 of 9) intron (NR_045839, intron 8 of 9) -7027 NR_136339 105371414 Hs.657381 NR_136339 ENSG00000260279 LOC105371414 - uncharacterized LOC105371414 ncRNA 342-3 chr1 191538190 191538445 + 2 NA Intergenic LTR40A1|LTR|ERVL -309819 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 428.5-23 chr8 134506296 134506765 + 2 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -91541 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 246-9 chr2 52457312 52457501 + 2 NA Intergenic MER21C|LTR|ERVL 86758 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 392.5-21 chr4 55949694 55949980 + 2 NA intron (NM_025009, intron 1 of 25) intron (NM_025009, intron 1 of 25) 892 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 439.5-24 chr5 18638703 18639100 + 2 NA Intergenic Intergenic 831627 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 296-35 chr8 121999347 121999706 + 2 NA Intergenic Intergenic -358086 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 177-2 chr11 4410562 4410679 + 2 NA Intergenic L1MD3|LINE|L1 -16918 NM_003141 6737 Hs.532357 NM_003141 ENSG00000132109 TRIM21 RNF81|RO52|Ro/SSA|SSA|SSA1 tripartite motif containing 21 protein-coding 353-24 chr3 7321681 7321897 + 2 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 213495 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 410.5-8 chr2 15470033 15470434 + 2 NA intron (NR_052013, intron 16 of 50) intron (NR_052013, intron 16 of 50) 91101 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 224.5-5 chr11 10166963 10167121 + 2 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 127165 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 244-16 chr2 190983703 190983887 + 2 NA intron (NM_007315, intron 16 of 24) intron (NM_007315, intron 16 of 24) 30455 NM_007315 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 211-15 chr21 28168502 28168722 + 2 NA intron (NR_126012, intron 4 of 5) intron (NR_126012, intron 4 of 5) 60055 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 405-20 chr3 136374144 136374373 + 2 NA intron (NM_005862, intron 23 of 33) L1PA4|LINE|L1 123918 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 468-37 chr5 150955631 150955975 + 2 NA Intergenic L1MDa|LINE|L1 -9219 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 421-14 chr19 57270184 57270395 + 2 NA intron (NR_136529, intron 2 of 2) L2a|LINE|L2 -9678 NM_001330622 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 243.5-11 chr13 46363990 46364276 + 2 NA intron (NM_025113, intron 5 of 14) AluSx3|SINE|Alu 23119 NM_001286764 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L|PACER rubicon like autophagy enhancer protein-coding 277.5-28 chr6 7002513 7002755 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -105109 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 503.5-4 chr11 34694935 34695401 + 2 NA Intergenic L1M2|LINE|L1 62602 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 259.5-29 chr4 76035762 76035915 + 2 NA intron (NM_005409, intron 1 of 3) intron (NM_005409, intron 1 of 3) 232 NM_005409 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 669.5-8 chr4 121928381 121928816 + 2 NA intron (NM_001130698, intron 2 of 11) intron (NM_001130698, intron 2 of 11) 4515 NM_003305 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 154 chr1 247650084 247650229 + 2 NA Intergenic MER4D|LTR|ERV1 22885 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 205.5-28 chr7 6247349 6247534 + 2 NA intron (NM_001367581, intron 1 of 13) L1M6|LINE|L1 25183 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 512-3 chr11 35655328 35655771 + 2 NA Intergenic Intergenic -7226 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 310-16 chr17 50053939 50054159 + 2 NA intron (NR_038230, intron 1 of 2) Arthur1A|DNA|hAT-Tip100 1690 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 PICART1 - p53 inducible cancer associated RNA transcript 1 ncRNA 129 chr10 113001469 113001591 + 2 NA intron (NM_001367943, intron 4 of 14) intron (NM_001367943, intron 4 of 14) -43825 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 681.5-6 chr5 56008027 56008747 + 2 NA Intergenic Intergenic 13220 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 348.5-4 chr11 111059467 111059689 + 2 NA Intergenic Intergenic 37740 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 576-4 chr13 84480348 84480782 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -303089 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 509.5-11 chr5 82494726 82495121 + 2 NA Intergenic Intergenic 215461 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 321.5 chr1 10957359 10957683 + 2 NA intron (NM_001366227, intron 5 of 10) intron (NM_001366227, intron 5 of 10) 9166 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 539-8 chr19 4371361 4371763 + 2 NA intron (NM_003025, intron 1 of 9) intron (NM_003025, intron 1 of 9) 28035 NM_001300862 84954 Hs.321689 NM_032868 ENSG00000008382 MPND - MPN domain containing protein-coding 328-21 chr2 83322618 83322823 + 2 NA Intergenic Intergenic -200094 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 619-13 chr9 129938566 129939058 + 2 NA intron (NM_001363755, intron 6 of 15) intron (NM_001363755, intron 6 of 15) 69207 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 219.5-33 chr6 17384304 17384567 + 2 NA Intergenic AluJr4|SINE|Alu -9070 NM_001363534 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 292.5-7 chr11 79957040 79957337 + 2 NA Intergenic Intergenic -516158 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 740-4 chr17 69989844 69990466 + 2 NA Intergenic LTR49-int|LTR|ERV1 28448 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 229.5-35 chr5 154285212 154285363 + 2 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) -61819 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 412-2 chr1 56344642 56344973 + 2 NA Intergenic L1PA17|LINE|L1 -70156 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 264.5-33 chr7 11829165 11829360 + 2 NA intron (NM_015204, intron 1 of 26) (AT)n|Simple_repeat|Simple_repeat 2936 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 285-32 chr8 128252737 128252975 + 2 NA Intergenic MIRb|SINE|MIR 102740 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 355.5-8 chr14 63938706 63938978 + 2 NA intron (NM_015180, intron 2 of 114) L2a|LINE|L2 85838 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 392-37 chr8 113498846 113499137 + 2 NA Intergenic L1PA8A|LINE|L1 -62052 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 180.5-13 chr3 74547549 74547666 + 2 NA Intergenic L1M4|LINE|L1 -26467 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 601.5-3 chr10 91615384 91615842 + 2 NA Intergenic L1ME3E|LINE|L1 -4153 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 417.5-5 chr2 54650383 54650890 + 2 NA intron (NM_178313, intron 25 of 30) intron (NM_178313, intron 25 of 30) -74376 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 276-5 chr1 113153317 113153612 + 2 NA Intergenic Intergenic 52789 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 364-2 chr1 119717272 119717519 + 2 NA intron (NM_006623, intron 1 of 11) L1M5|LINE|L1 5461 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 353-9 chr12 1234776 1235116 + 2 NA intron (NR_027948, intron 12 of 19) L1ME3E|LINE|L1 207198 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 238-25 chr3 25514146 25514306 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 55916 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 324.5-29 chr4 125631441 125631844 + 2 NA Intergenic MER20|DNA|hAT-Charlie 124383 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 510-4 chr10 110171969 110172277 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -35482 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 396.5-2 chr1 79601602 79602141 + 2 NA Intergenic L1MA9|LINE|L1 -595141 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 428-3 chr1 159887307 159887630 + 2 NA intron (NM_012337, intron 5 of 11) intron (NM_012337, intron 5 of 11) 12611 NR_130464 100422852 NR_130464 ENSG00000266458 MIR4259 - microRNA 4259 ncRNA 467.5-9 chr20 18450542 18451092 + 2 NA intron (NM_018152, intron 5 of 19) intron (NM_018152, intron 5 of 19) 16213 NM_018152 55184 Hs.472225 NM_018152 ENSG00000089091 DZANK1 ANKRD64|C20orf12|C20orf84 double zinc ribbon and ankyrin repeat domains 1 protein-coding 260.5-3 chr10 100588058 100588266 + 2 NA Intergenic L1MD1|LINE|L1 52219 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 124.5-6 chr18 61603671 61603789 + 2 NA Intergenic L2a|LINE|L2 -144446 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 399.5-18 chr3 166072478 166073034 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -235333 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 217-29 chr8 129109301 129109488 + 2 NA Intergenic Intergenic 131846 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 417-22 chr17 27615650 27615982 + 2 NA intron (NM_014238, intron 19 of 20) HAL1ME|LINE|L1 -15372 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 371.5-11 chr16 64629573 64629875 + 2 NA Intergenic Intergenic 492339 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 511-16 chr4 129423242 129423667 + 2 NA Intergenic Intergenic 327302 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 288-11 chr14 33616856 33617165 + 2 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -91927 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 295.5-31 chr8 100341886 100342157 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -5817 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 454.5 chr1 110832920 110833288 + 2 NA Intergenic L1MD1|LINE|L1 -38095 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 303-35 chr8 104674240 104674462 + 2 NA Intergenic Intergenic -85327 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 919-2 chr15 75421111 75421637 + 2 NA intron (NM_015477, intron 3 of 20) intron (NM_015477, intron 3 of 20) 30316 NM_015477 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 474-9 chr14 66001230 66001582 + 2 NA Intergenic L2c|LINE|L2 -484965 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 392-32 chr7 18699955 18700255 + 2 NA intron (NM_058176, intron 11 of 22) intron (NM_058176, intron 11 of 22) 190835 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 334.5-30 chr9 82477384 82477584 + 2 NA Intergenic LTR40b|LTR|ERVL 488712 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 302-32 chr8 62357736 62357975 + 2 NA intron (NM_001304533, intron 1 of 6) A-rich|Low_complexity|Low_complexity 109001 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 259.5-10 chr16 48368048 48368235 + 2 NA intron (NM_003031, intron 1 of 1) intron (NM_003031, intron 1 of 1) -2254 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 491-22 chr5 157365365 157365647 + 2 NA intron (NR_136205, intron 1 of 2) intron (NR_136205, intron 1 of 2) -19829 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 157-2 chr10 37235238 37235354 + 2 NA Intergenic Intergenic -73890 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 331.5-4 chr1 79556553 79556718 + 2 NA Intergenic Intergenic -549905 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 298-24 chr5 133622740 133622937 + 2 NA Intergenic L1MD1|LINE|L1 -10297 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 621.5-3 chr16 83439178 83439588 + 2 NA intron (NM_001220489, intron 5 of 12) MER90|LTR|ERV1 -68963 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 336-42 chr4 130753625 130753856 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 377379 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 722-3 chr17 71607894 71608592 + 2 NA Intergenic Intergenic -406064 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 271.5-11 chr12 41115139 41115438 + 2 NA Intergenic Intergenic -73032 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 280-31 chr6 20685111 20685454 + 2 NA intron (NM_017774, intron 5 of 15) L1MC1|LINE|L1 150825 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 282-2 chr1 21165041 21165312 + 2 NA intron (NM_001198803, intron 1 of 12) L1MB8|LINE|L1 2863 NM_001198803 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 427-28 chr6 36807007 36807385 + 2 NA intron (NM_020939, intron 3 of 20) intron (NM_020939, intron 3 of 20) 32248 NM_020939 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 530-11 chr14 83289825 83290148 + 2 NA Intergenic Intergenic 647354 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 391-25 chr5 131049227 131049590 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 115848 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 353-41 chrX 79612226 79612402 + 2 NA Intergenic Intergenic -244762 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 310-7 chr12 3156706 3157004 + 2 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 79476 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 452-25 chr5 26855683 26856104 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 182693 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 202-17 chr3 129150692 129150866 + 2 NA intron (NM_001204890, intron 5 of 12) L1ME1|LINE|L1 10284 NM_020701 57461 Hs.512661 NM_020701 ENSG00000240682 ISY1 FSAP33 ISY1 splicing factor homolog protein-coding 399-17 chr18 7199845 7200088 + 2 NA Intergenic AluSp|SINE|Alu -31138 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 340-12 chr14 65142076 65142370 + 2 NA Intergenic Intergenic -39528 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 337-30 chr7 119623969 119624249 + 2 NA intron (NR_131960, intron 4 of 4) MLT1C|LTR|ERVL-MaLR 283266 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 382-30 chr3 90319204 90319455 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1211708 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 600-9 chr12 25922199 25922738 + 2 NA Intergenic Intergenic 35117 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 328.5-3 chr1 185718042 185718314 + 2 NA Intergenic Intergenic -16213 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 426-29 chr3 125157696 125157958 + 2 NA intron (NM_001195483, intron 4 of 12) L2c|LINE|L2 -6275 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 187-4 chr11 72020861 72021037 + 2 NA TTS (NR_104178) TTS (NR_104178) 6658 NR_104178 100128494 Hs.713607 NR_104178 ENSG00000251143 LOC100128494 - uncharacterized LOC100128494 ncRNA 362.5-31 chr8 104046505 104046878 + 2 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -176644 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 545-3 chr1 183152655 183153066 + 2 NA Intergenic L1MC4|LINE|L1 -11590 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 320.5-23 chr3 182981664 182981992 + 2 NA intron (NM_001308101, intron 1 of 6) intron (NM_001308101, intron 1 of 6) -1290 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 302.5-28 chr22 26131198 26131421 + 2 NA Intergenic Intergenic -38153 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 483.5-9 chr20 41348743 41349017 + 2 NA non-coding (NR_126051, exon 4 of 20) non-coding (NR_126051, exon 4 of 20) 8059 NM_001301860 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 362-8 chr14 52331136 52331424 + 2 NA Intergenic AluY|SINE|Alu 16968 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 254.5-20 chr17 75320576 75320778 + 2 NA intron (NM_002086, intron 5 of 5) intron (NM_002086, intron 5 of 5) -31228 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 237-3 chr10 35415262 35415420 + 2 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 78467 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 281-35 chr6 46912169 46912355 + 2 NA intron (NM_015234, intron 1 of 20) L2c|LINE|L2 8791 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 461 chr1 90969456 90969903 + 2 NA intron (NM_201269, intron 2 of 5) MER44B|DNA|TcMar-Tigger 51829 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 484-27 chr4 84839253 84839729 + 2 NA intron (NM_014991, intron 6 of 67) intron (NM_014991, intron 6 of 67) -126125 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 400-3 chr1 215532035 215532266 + 2 NA Intergenic MER51E|LTR|ERV1 -35154 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 247.5-32 chr8 69694572 69694758 + 2 NA intron (NM_001146009, intron 4 of 7) intron (NM_001146009, intron 4 of 7) 101765 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 259-17 chr3 81332583 81332782 + 2 NA Intergenic Intergenic 338814 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 529-9 chr16 4191985 4192359 + 2 NA exon (NM_001323668, exon 7 of 7) exon (NM_001323668, exon 7 of 7) 49908 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 769.5-8 chr3 153876574 153877087 + 2 NA Intergenic L1PA13|LINE|L1 -114304 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 527-18 chr20 6796543 6796995 + 2 NA Intergenic L1MD2|LINE|L1 29083 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 412.5-7 chr12 28491953 28492330 + 2 NA intron (NM_001352082, intron 13 of 13) X6A_LINE|LINE|CR1 -301403 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 295-28 chr21 33944977 33945134 + 2 NA intron (NR_038883, intron 1 of 2) L1MC1|LINE|L1 13841 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 375-29 chr6 67816112 67816332 + 2 NA Intergenic Intergenic -239129 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 562.5-13 chr2 71626487 71626917 + 2 NA intron (NM_001130987, intron 41 of 55) L1MEd|LINE|L1 160003 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 401.5-22 chr4 62583120 62583370 + 2 NA Intergenic Intergenic -421480 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 324-24 chr20 24720968 24721187 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -228192 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 329-28 chr5 38118031 38118335 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) -30297 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 607-11 chr12 19558667 19559157 + 2 NA Intergenic Intergenic 118313 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 286-21 chr3 3969337 3969559 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -168573 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 237-18 chr3 126983923 126984143 + 2 NA Intergenic CpG -4561 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 317.5-36 chr8 79067633 79068051 + 2 NA Intergenic L1MC2|LINE|L1 230313 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 255-2 chr10 89387814 89388059 + 2 NA Intergenic L1MC5|LINE|L1 -4610 NM_001270930 3434 Hs.20315 NM_001548 ENSG00000185745 IFIT1 C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561 interferon induced protein with tetratricopeptide repeats 1 protein-coding 484-10 chr11 23124115 23124576 + 2 NA Intergenic Intergenic -263871 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 473-28 chr9 25661089 25661443 + 2 NA Intergenic Intergenic 17592 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 203.5-34 chr9 30485734 30485924 + 2 NA Intergenic Intergenic -77375 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 533-9 chr12 18774888 18775182 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 36916 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 284.5-30 chr4 107545683 107545889 + 2 NA Intergenic Intergenic 174448 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 375.5-20 chr4 80187322 80187588 + 2 NA intron (NM_020226, intron 1 of 9) intron (NM_020226, intron 1 of 9) 2185 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 393.5-6 chr11 105822830 105823127 + 2 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 199262 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 385.5-43 chr8 125069627 125069971 + 2 NA intron (NM_014846, intron 9 of 28) intron (NM_014846, intron 9 of 28) 21993 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 559-14 chr2 160321676 160322151 + 2 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) -50018 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 199-11 chr2 127331274 127331431 + 2 NA intron (NM_006609, intron 4 of 15) intron (NM_006609, intron 4 of 15) 11877 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 345-10 chr14 55116853 55117129 + 2 NA Intergenic Intergenic -12261 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 477-12 chr2 147575825 147576147 + 2 NA Intergenic Intergenic -268531 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 417-13 chr12 17711756 17712056 + 2 NA Intergenic L1MA4|LINE|L1 38607 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 195-6 chr12 54027445 54027634 + 2 NA promoter-TSS (NM_004503) promoter-TSS (NM_004503) -901 NM_004503 3223 Hs.549040 NM_004503 ENSG00000197757 HOXC6 CP25|HHO.C8|HOX3|HOX3C homeobox C6 protein-coding 271-28 chr8 122517061 122517261 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 51483 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 313.5-45 chr9 25780348 25780683 + 2 NA non-coding (NR_121604, exon 2 of 6) non-coding (NR_121604, exon 2 of 6) 459 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 397-8 chr14 33331059 33331480 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -377668 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 308-6 chr12 8103493 8103724 + 2 NA Intergenic AluY|SINE|Alu -20024 NM_194448 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 440-2 chr1 105799571 105799931 + 2 NA Intergenic Intergenic -180816 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 456.5-20 chr6 41174065 41174308 + 2 NA Intergenic Charlie14a|DNA|hAT-Charlie -11000 NM_018965 54209 Hs.435295 NM_018965 ENSG00000095970 TREM2 PLOSL2|TREM-2|Trem2a|Trem2b|Trem2c triggering receptor expressed on myeloid cells 2 protein-coding 365.5-20 chr6 154817454 154817810 + 2 NA intron (NM_014892, intron 13 of 19) intron (NM_014892, intron 13 of 19) -35728 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 300-12 chr2 231034416 231034691 + 2 NA Intergenic Intergenic -2970 NM_001144994 257407 Hs.526596 NM_001144994 ENSG00000204128 C2orf72 - chromosome 2 open reading frame 72 protein-coding 393.5-16 chr4 85098959 85099346 + 2 NA Intergenic L1MC1|LINE|L1 131668 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 442.5-23 chr7 120225909 120226402 + 2 NA Intergenic LTR16A1|LTR|ERVL -47020 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 401-30 chr5 174011947 174012264 + 2 NA Intergenic L1MD1|LINE|L1 22935 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 581-10 chr22 47781521 47781865 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 150019 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 456 chr1 27794630 27794996 + 2 NA intron (NM_177424, intron 3 of 8) AluJr|SINE|Alu 21594 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 508-22 chr3 130587786 130588103 + 2 NA intron (NM_001102608, intron 10 of 35) intron (NM_001102608, intron 10 of 35) 27610 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 717 chr11 93438493 93439003 + 2 NA TTS (NM_181645) TTS (NM_181645) 104643 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 344.5-22 chr4 75508562 75508922 + 2 NA intron (NR_037914, intron 3 of 8) L1ME1|LINE|L1 554 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 373.5-9 chr15 47462411 47462635 + 2 NA intron (NM_001198999, intron 2 of 19) intron (NM_001198999, intron 2 of 19) -254982 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 478.5-17 chr4 103110742 103111121 + 2 NA exon (NM_001286734, exon 45 of 47) exon (NM_001286734, exon 45 of 47) -11097 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 253-7 chr15 73229119 73229344 + 2 NA intron (NM_002499, intron 7 of 28) L1M4|LINE|L1 -70679 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 346.5-21 chr4 55562952 55563422 + 2 NA intron (NM_152401, intron 4 of 5) intron (NM_152401, intron 4 of 5) -16278 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 234-12 chr2 19866075 19866303 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -2665 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 420.5-10 chr19 48152653 48153136 + 2 NA intron (NR_135500, intron 5 of 27) MER119|DNA|hAT-Charlie 17450 NM_001320970 3978 Hs.1770 NM_000234 ENSG00000105486 LIG1 - DNA ligase 1 protein-coding 247-23 chr6 128709954 128710169 + 2 NA Intergenic Intergenic -173077 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 206.5-26 chr21 37117749 37117852 + 2 NA intron (NM_003316, intron 11 of 45) AluJr|SINE|Alu 34853 NM_003316 7267 Hs.368214 NM_003316 ENSG00000182670 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 439-2 chr14 53790251 53790516 + 2 NA Intergenic Intergenic 158101 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 603.5-5 chr2 192145500 192146109 + 2 NA intron (NM_001305134, intron 4 of 9) MIR|SINE|MIR 49129 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 756.5-5 chr7 114046161 114046914 + 2 NA Intergenic L2c|LINE|L2 -39790 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 283.5-15 chr17 3544400 3544576 + 2 NA intron (NM_001258205, intron 4 of 17) intron (NM_001258205, intron 4 of 17) 13324 NM_145068 162514 Hs.446255 NM_145068 ENSG00000167723 TRPV3 FNEPPK2|OLMS|VRL3 transient receptor potential cation channel subfamily V member 3 protein-coding 399-7 chr11 88318427 88318804 + 2 NA intron (NM_001814, intron 2 of 6) intron (NM_001814, intron 2 of 6) 19121 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 351-33 chr4 42892102 42892371 + 2 NA Intergenic Intergenic -1030 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 426-38 chr5 131620573 131621011 + 2 NA intron (NM_016340, intron 1 of 27) AluSz6|SINE|Alu 14437 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 309.5-6 chr11 72578185 72578364 + 2 NA exon (NM_001243784, exon 30 of 31) exon (NM_001243784, exon 30 of 31) 7618 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 503-7 chr14 86489287 86489680 + 2 NA Intergenic Intergenic -416295 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 385.5-41 chr7 100655274 100655525 + 2 NA intron (NR_134539, intron 3 of 13) intron (NR_134539, intron 3 of 13) 1049 NM_016188 51412 Hs.259831 NM_016188 ENSG00000077080 ACTL6B ACTL6|BAF53B|arpNalpha actin like 6B protein-coding 286-19 chr20 49578463 49578644 + 2 NA Intergenic Intergenic -10416 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 393-8 chr12 54401968 54402232 + 2 NA intron (NM_002205, intron 20 of 29) intron (NM_002205, intron 20 of 29) -10802 NM_001130967 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 310-32 chr4 160969200 160969408 + 2 NA Intergenic Intergenic -1053429 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 205-27 chr7 68558569 68558783 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 538423 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 264-29 chr8 100391373 100391649 + 2 NA Intergenic Intergenic 8748 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 353-21 chr2 39387463 39387684 + 2 NA intron (NM_003618, intron 1 of 33) intron (NM_003618, intron 1 of 33) 49712 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 469.5-22 chr9 83105934 83106295 + 2 NA Intergenic L2|LINE|L2 -42972 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 295-6 chr10 116323513 116323698 + 2 NA promoter-TSS (NM_198515) promoter-TSS (NM_198515) -843 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 511-24 chr6 54519114 54519493 + 2 NA Intergenic Intergenic 210862 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 287-19 chr2 88093493 88093654 + 2 NA intron (NM_198274, intron 5 of 9) intron (NM_198274, intron 5 of 9) -10974 NR_039940 100616447 NR_039940 ENSG00000265003 MIR4780 - microRNA 4780 ncRNA 268.5-26 chr5 61480208 61480410 + 2 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) 148051 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 433-3 chr1 246563400 246563843 + 2 NA intron (NM_022366, intron 2 of 7) Tigger4|DNA|TcMar-Tigger 2640 NM_022366 64216 Hs.7395 NM_022366 ENSG00000162851 TFB2M Hkp1|mtTFB2 transcription factor B2, mitochondrial protein-coding 660-11 chr5 37895761 37896511 + 2 NA Intergenic Intergenic -52355 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 444.5 chr1 223305572 223305998 + 2 NA intron (NM_017982, intron 2 of 8) intron (NM_017982, intron 2 of 8) 58391 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 537.5-8 chr17 74608366 74608800 + 2 NA intron (NR_158152, intron 3 of 3) MIR3|SINE|MIR 8743 NR_158152 101928343 Hs.93825 NR_158152 LOC101928343 - uncharacterized LOC101928343 ncRNA 607-14 chr18 40123876 40124295 + 2 NA Intergenic Intergenic 57799 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 141.5-8 chr13 104402418 104402488 + 2 NA Intergenic L1MA8|LINE|L1 977253 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 269-9 chr11 48039624 48039781 + 2 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -57080 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 311.5-37 chr6 69124482 69124721 + 2 NA intron (NM_001704, intron 17 of 31) L1MDb|LINE|L1 489319 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 470-9 chr12 34654008 34654300 + 2 NA Intergenic ALR/Alpha|Satellite|centr 631658 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 446-9 chr11 95045995 95046400 + 2 NA Intergenic L1ME2|LINE|L1 -20680 NR_103726 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 761.5-2 chr10 115154837 115155483 + 2 NA intron (NM_001276282, intron 5 of 7) L1MA4A|LINE|L1 61795 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 668-14 chr9 82698682 82699070 + 2 NA Intergenic L1MA9|LINE|L1 364266 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 187-14 chr2 124980936 124981088 + 2 NA Intergenic Intergenic 955725 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 217.5-35 chr9 94119639 94119840 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 35275 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 249-3 chr10 93993268 93993524 + 2 NA promoter-TSS (NM_016341) promoter-TSS (NM_016341) -535 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 187-5 chr13 41292731 41292873 + 2 NA intron (NM_001354073, intron 1 of 14) AluJr|SINE|Alu -18465 NM_018527 79612 Hs.512914 NM_018527 ENSG00000172766 NAA16 NARG1L N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding 391-8 chr16 17467714 17468153 + 2 NA intron (NM_022166, intron 1 of 11) intron (NM_022166, intron 1 of 11) 3027 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 469-20 chr3 162249268 162249716 + 2 NA Intergenic LTR105_Mam|LTR|ERVL 752684 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 494.5-3 chr11 68895661 68896164 + 2 NA intron (NM_181515, intron 4 of 6) AluJb|SINE|Alu 7920 NM_181514 219927 Hs.503047 NM_181512 ENSG00000197345 MRPL21 L21mt|MRP-L21 mitochondrial ribosomal protein L21 protein-coding 217-11 chr18 33207130 33207332 + 2 NA intron (NM_001308126, intron 20 of 23) L1M6|LINE|L1 233340 NM_001371121 359.5-26 chr22 41327819 41328065 + 2 NA intron (NM_017590, intron 5 of 22) AluJo|SINE|Alu -25573 NM_001317930 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 334-11 chr15 59071474 59071808 + 2 NA intron (NM_001270529, intron 6 of 13) AluJb|SINE|Alu -33505 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 282-11 chr14 77373205 77373480 + 2 NA intron (NM_001346133, intron 1 of 5) intron (NM_001346133, intron 1 of 5) 567 NM_001346134 283578 Hs.26403 NM_213601 ENSG00000100580 TMED8 FAM15B transmembrane p24 trafficking protein family member 8 protein-coding 331-15 chr12 94026024 94026337 + 2 NA Intergenic Intergenic -82574 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 518.5-17 chr5 154580615 154581052 + 2 NA Intergenic MIR3|SINE|MIR 15239 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 590.5-11 chr2 22244930 22245301 + 2 NA Intergenic Intergenic -291364 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 266-22 chr2 112866220 112866390 + 2 NA Intergenic L2b|LINE|L2 -29526 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 484-13 chr12 18657307 18657678 + 2 NA Intergenic L1MB3|LINE|L1 80017 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 266-5 chr11 20246768 20247082 + 2 NA Intergenic Intergenic -86450 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 201-19 chr6 64426945 64427070 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 620171 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 483-18 chr22 28189475 28189742 + 2 NA intron (NM_001145418, intron 5 of 22) HAL1|LINE|L1 -268996 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 341-13 chr15 67248990 67249169 + 2 NA intron (NM_001271885, intron 1 of 9) AluSx|SINE|Alu 5582 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 288-22 chr2 156409340 156409582 + 2 NA Intergenic AluJr|SINE|Alu -26091 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 299-9 chr12 9670624 9670909 + 2 NA intron (NM_001197319, intron 1 of 2) L1MD2|LINE|L1 1053 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 389.5-10 chr11 34186938 34187271 + 2 NA intron (NM_145804, intron 3 of 16) MIRc|SINE|MIR 81475 NM_024662 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 294.5-13 chr15 48880105 48880336 + 2 NA TTS (NM_014335) TTS (NM_014335) 2086 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 393.5-21 chr7 37564099 37564463 + 2 NA Intergenic L1PA8|LINE|L1 -114955 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 343.5-7 chr11 47422730 47423084 + 2 NA exon (NM_002804, exon 7 of 12) exon (NM_002804, exon 7 of 12) 3566 NM_002804 5702 Hs.250758 NM_002804 ENSG00000165916 PSMC3 TBP1 proteasome 26S subunit, ATPase 3 protein-coding 460.5-6 chr14 36301007 36301322 + 2 NA intron (NM_001308110, intron 6 of 7) intron (NM_001308110, intron 6 of 7) 19473 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 295.5-28 chr5 81726443 81726684 + 2 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 24690 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 242-12 chr15 46629301 46629465 + 2 NA Intergenic Intergenic -554706 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 247.5-16 chr2 175036295 175036448 + 2 NA Intergenic Intergenic -30992 NM_001025201 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 431-16 chr2 121548993 121549348 + 2 NA intron (NM_015282, intron 2 of 38) L1PA14|LINE|L1 18290 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 261-13 chr21 24744449 24744653 + 2 NA Intergenic Intergenic -95999 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 523 chr1 44772469 44772936 + 2 NA Intergenic U3|snRNA|snRNA -2838 NM_001012 6202 Hs.512675 NM_001012 ENSG00000142937 RPS8 S8 ribosomal protein S8 protein-coding 394-5 chr11 133823292 133823602 + 2 NA Intergenic MIRb|SINE|MIR -13071 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 530-18 chr4 30381048 30381471 + 2 NA Intergenic Intergenic -339110 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 586-12 chr4 84330535 84331095 + 2 NA Intergenic L1MB8|LINE|L1 -31646 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 372-11 chr11 93063877 93064112 + 2 NA Intergenic Intergenic 94371 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 325.5-25 chr5 130588085 130588356 + 2 NA Intergenic L1ME3F|LINE|L1 577036 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 357-19 chr2 39612525 39612716 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -52878 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 326-26 chr22 33839004 33839207 + 2 NA intron (NM_001362953, intron 1 of 14) MSTB|LTR|ERVL-MaLR 81323 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 188-6 chr13 102519024 102519140 + 2 NA Intergenic Intergenic -77904 NR_160411 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 463-5 chr10 63083202 63083758 + 2 NA Intergenic AluSq2|SINE|Alu -49767 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 456.5-17 chr5 25723561 25724092 + 2 NA Intergenic Intergenic 532873 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 456-21 chr3 81495670 81496242 + 2 NA intron (NM_000158, intron 15 of 15) intron (NM_000158, intron 15 of 15) 265689 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 361-29 chr8 86343871 86344156 + 2 NA intron (NM_007013, intron 1 of 24) intron (NM_007013, intron 1 of 24) 1466 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 270-31 chr7 127408249 127408494 + 2 NA Intergenic Intergenic -15663 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 587-5 chr15 59505788 59506364 + 2 NA intron (NM_152450, intron 4 of 8) ERVL-E-int|LTR|ERVL 67890 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 259.5-41 chr6 143021407 143021679 + 2 NA intron (NR_038987, intron 2 of 2) L1MC3|LINE|L1 16039 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 435-42 chr9 84107205 84107476 + 2 NA Intergenic L2c|LINE|L2 43897 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 391.5-9 chr13 45952516 45952770 + 2 NA Intergenic L1MEc|LINE|L1 100103 NM_001330566 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 618-15 chr6 125381965 125382433 + 2 NA Intergenic MIR|SINE|MIR -80232 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 197.5-19 chr2 27733870 27734091 + 2 NA intron (NR_160725, intron 2 of 2) L1MB8|LINE|L1 17857 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 282-15 chr2 33406946 33407207 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -11440 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 220.5-21 chr4 30548514 30548675 + 2 NA Intergenic L1M5|LINE|L1 -171775 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 340.5-2 chr1 226825575 226825903 + 2 NA Intergenic MamRep605|LTR?|LTR? -44833 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 268-10 chr2 96630990 96631274 + 2 NA intron (NR_047654, intron 3 of 20) L2c|LINE|L2 6859 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 463-17 chr20 54126928 54127487 + 2 NA Intergenic Intergenic 46779 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 271.5-21 chr2 81215959 81216108 + 2 NA Intergenic L1MEc|LINE|L1 250913 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 556-8 chr17 52316221 52316587 + 2 NA Intergenic Intergenic -74118 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 531-29 chr7 85068769 85069169 + 2 NA intron (NM_152754, intron 4 of 16) intron (NM_152754, intron 4 of 16) 52962 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 358-36 chr3 188536661 188536906 + 2 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) 31883 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 408-32 chr5 29582888 29583244 + 2 NA Intergenic Intergenic -187090 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 375.5-16 chr2 196120722 196121143 + 2 NA Intergenic AluSq2|SINE|Alu 50646 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 498-18 chr21 28858952 28859445 + 2 NA Intergenic L1MEj|LINE|L1 26169 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 494-2 chr1 213511197 213511530 + 2 NA Intergenic Intergenic -413386 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 252.5-14 chr2 110937953 110938199 + 2 NA intron (NM_001142807, intron 12 of 17) intron (NM_001142807, intron 12 of 17) 177512 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 297-18 chr20 43969427 43969612 + 2 NA intron (NM_032883, intron 2 of 9) intron (NM_032883, intron 2 of 9) 23623 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 232-6 chr10 80625141 80625260 + 2 NA intron (NM_207372, intron 6 of 6) L1ME5|LINE|L1 -24597 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 718.5-5 chr14 55625682 55626369 + 2 NA intron (NR_073129, intron 6 of 45) L1M7|LINE|L1 45818 NM_001079521 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 251-5 chr14 35245867 35246095 + 2 NA intron (NM_014672, intron 5 of 7) HAL1|LINE|L1 -32577 NM_001282234 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 269-34 chr8 67609438 67609586 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 136848 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 227-14 chr13 20395698 20395920 + 2 NA Intergenic L2b|LINE|L2 38037 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 444-26 chr7 36892907 36893266 + 2 NA intron (NM_001206480, intron 17 of 21) intron (NM_001206480, intron 17 of 21) 26346 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 430-29 chr5 156354354 156354692 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 27359 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 437-21 chr18 68434689 68434974 + 2 NA Intergenic Intergenic 280277 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 358-11 chr11 12090408 12090673 + 2 NA Intergenic Intergenic -20036 NM_001282668 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 345-32 chr5 59061962 59062188 + 2 NA intron (NM_006203, intron 5 of 14) intron (NM_006203, intron 5 of 14) -22599 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 552.5-13 chr3 72239817 72240161 + 2 NA Intergenic L2a|LINE|L2 88732 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 323-2 chr1 241541546 241541960 + 2 NA intron (NM_003679, intron 1 of 14) Helitron1Na_Mam|RC|Helitron 9375 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 362-9 chr14 62233413 62233716 + 2 NA Intergenic L1M4|LINE|L1 -93591 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 282.5 chr1 13627266 13627560 + 2 NA Intergenic Intergenic 41953 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 325.5-36 chrX 94542151 94542346 + 2 NA Intergenic Intergenic 520978 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 276-4 chr1 99950870 99951039 + 2 NA Intergenic LTR39|LTR|ERV1 -19042 NM_001271684 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 235.5-2 chr1 44705677 44705925 + 2 NA intron (NM_001145636, intron 6 of 11) L2c|LINE|L2 16100 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 590.5-15 chr6 124479241 124479875 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 196553 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 211-33 chrX 85093226 85093429 + 2 NA TTS (NM_198450) TTS (NM_198450) 15641 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 391.5-22 chr2 182729512 182729873 + 2 NA intron (NR_073367, intron 7 of 22) intron (NR_073367, intron 7 of 22) 13435 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 774-2 chr14 58303226 58303714 + 2 NA intron (NM_002892, intron 3 of 23) intron (NM_002892, intron 3 of 23) 4915 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 392-13 chr14 51201487 51201705 + 2 NA Intergenic L1P4d|LINE|L1 -38651 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 408-39 chr7 77816124 77816431 + 2 NA intron (NM_001366088, intron 1 of 11) AluSz|SINE|Alu 17306 NM_001366088 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 422-17 chr2 204723929 204724215 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 178597 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 412.5-33 chr9 130416089 130416547 + 2 NA intron (NM_001291815, intron 85 of 97) AluSx1|SINE|Alu -28389 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 641-2 chr15 82171160 82171693 + 2 NA intron (NM_001040610, intron 13 of 17) L1M5|LINE|L1 82832 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 511-3 chr10 10284748 10285116 + 2 NA Intergenic Intergenic 177417 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 484-29 chr5 102543295 102543600 + 2 NA Intergenic AluSx|SINE|Alu -37921 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 550.5-5 chr12 2292599 2292955 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 23001 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 527-5 chr10 67407304 67407636 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA11|LINE|L1 -4060 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 204.5-17 chr17 29825712 29825883 + 2 NA intron (NM_033389, intron 1 of 14) MamRTE1|LINE|RTE-BovB -64365 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 435-5 chr10 66510643 66510882 + 2 NA intron (NM_001127384, intron 11 of 17) L1MA5A|LINE|L1 -415274 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 308.5-4 chr11 69616171 69616420 + 2 NA Intergenic Intergenic -24810 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 287.5-2 chr1 57910332 57910682 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 49926 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 235-29 chr5 9074615 9074814 + 2 NA intron (NM_003966, intron 16 of 22) L1ME1|LINE|L1 -20819 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 612.5-5 chr17 33838585 33838951 + 2 NA intron (NM_001094, intron 1 of 9) MER5B|DNA|hAT-Charlie -305008 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 386.5 chr1 23827190 23827628 + 2 NA Intergenic AluSz|SINE|Alu -1950 NM_001166059 3155 Hs.533444 NM_000191 ENSG00000117305 HMGCL HL 3-hydroxy-3-methylglutaryl-CoA lyase protein-coding 313-30 chr6 67237572 67237872 + 2 NA Intergenic Intergenic -817629 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 489 chr1 116272305 116272731 + 2 NA Intergenic MIR|SINE|MIR -100726 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 598.5-4 chr18 1079087 1079420 + 2 NA Intergenic L1PA15|LINE|L1 -151260 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 460.5-3 chr11 129036630 129036927 + 2 NA intron (NM_001142685, intron 10 of 21) L1MB8|LINE|L1 -12590 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 316-27 chr3 110881998 110882270 + 2 NA Intergenic AluJb|SINE|Alu 187825 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 384-5 chr10 99722441 99722697 + 2 NA intron (NM_004376, intron 5 of 8) AluSx|SINE|Alu -9665 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 407.5 chr10 63216949 63217377 + 2 NA intron (NM_001322258, intron 4 of 24) intron (NM_001322258, intron 4 of 24) 52060 NM_001282948 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 405-3 chr10 93294855 93295145 + 2 NA Intergenic AluJb|SINE|Alu 187334 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 584-14 chr3 139175424 139175825 + 2 NA Intergenic L1MA9|LINE|L1 57898 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 215-17 chr2 103721511 103721639 + 2 NA Intergenic L1PREC2|LINE|L1 686757 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 803-2 chr13 67029837 67030326 + 2 NA intron (NM_001318372, intron 2 of 4) AluSx3|SINE|Alu 39195 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 354.5-11 chr16 11721690 11722074 + 2 NA intron (NR_136673, intron 3 of 9) intron (NR_136673, intron 3 of 9) 20975 NR_136672 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 457-31 chr8 62324456 62324754 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 75751 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 218-17 chr18 37911833 37912048 + 2 NA Intergenic MER129|LTR?|LTR? 254805 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 448-25 chr3 37109530 37109974 + 2 NA intron (NM_006309, intron 9 of 27) intron (NM_006309, intron 9 of 27) 64830 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 631-12 chr3_KI270783v1_alt 26711 27214 + 2 NA Intergenic LTR37A|LTR|ERV1 -42091 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 567.5-14 chr8 51919312 51919773 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -20356 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 210.5-21 chr5 37175960 37176107 + 2 NA intron (NM_023073, intron 30 of 51) intron (NM_023073, intron 30 of 51) -73013 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 276.5-37 chr6 170017650 170017788 + 2 NA Intergenic Intergenic 55096 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 236-23 chr4 54752524 54752710 + 2 NA Intergenic LTR67B|LTR|ERVL 94689 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 772-8 chr4 103717397 103718080 + 2 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 2247 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 351-43 chr8 141246666 141246952 + 2 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) -7758 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 531.5-3 chr14 86024253 86024583 + 2 NA intron (NR_110155, intron 1 of 3) L1ME3A|LINE|L1 89740 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 376.5-33 chrX 9258637 9258867 + 2 NA Intergenic Intergenic -204543 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1 X-linked protein-coding 600-19 chr5 18408395 18408842 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 601344 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 409-16 chr2 112334565 112335067 + 2 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 59219 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 164-2 chr1 92949583 92949732 + 2 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) 11805 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 479.5-19 chr8 40545593 40545907 + 2 NA intron (NM_024645, intron 6 of 6) MLT1C|LTR|ERVL-MaLR -202387 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 399.5-21 chr4 53239875 53240286 + 2 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 125981 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 385-34 chr6 119878549 119878850 + 2 NA Intergenic Intergenic -136480 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 230.5-20 chr14 49204187 49204449 + 2 NA Intergenic Intergenic 382062 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 216.5-37 chr8 68466579 68466848 + 2 NA intron (NR_146187, intron 3 of 13) L1ME3Cz|LINE|L1 -135222 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 265-29 chr4 37340112 37340339 + 2 NA intron (NM_001144990, intron 2 of 6) intron (NM_001144990, intron 2 of 6) 95482 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 521-9 chr22 34233235 34233726 + 2 NA Intergenic L1MA4|LINE|L1 -310592 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 796.5-2 chr20 54051998 54052522 + 2 NA intron (NM_001366297, intron 3 of 8) L1ME1|LINE|L1 6760 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 705.5-5 chr6 145032751 145033213 + 2 NA Intergenic L1ME4c|LINE|L1 627327 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 645-2 chr10 54608864 54609357 + 2 NA intron (NR_134503, intron 3 of 5) intron (NR_134503, intron 3 of 5) -1153 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 272-34 chr5 142003392 142003655 + 2 NA intron (NM_005471, intron 5 of 6) intron (NM_005471, intron 5 of 6) 9504 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 315.5-12 chr16 58257797 58258102 + 2 NA intron (NM_014157, intron 3 of 8) AluSx1|SINE|Alu 8013 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 253-27 chr4 97234557 97234736 + 2 NA Intergenic Intergenic -132280 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 280-35 chr8 46258237 46258433 + 2 NA Intergenic GSAT|Satellite|centr 359308 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 287-22 chr2 127700484 127700700 + 2 NA promoter-TSS (NM_032740) promoter-TSS (NM_032740) -905 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 221.5-3 chr10 31977580 31977723 + 2 NA Intergenic Intergenic -48775 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 275.5-9 chr11 37536015 37536282 + 2 NA Intergenic Intergenic -402453 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 765-7 chr7 7503061 7503676 + 2 NA intron (NM_001037763, intron 11 of 34) MIR|SINE|MIR 32505 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 556-15 chr8 81672132 81672472 + 2 NA intron (NM_005536, intron 6 of 8) LTR56|LTR|ERV1 14023 NM_005536 3612 Hs.656694 NM_005536 ENSG00000133731 IMPA1 IMP|IMPA|MRT59 inositol monophosphatase 1 protein-coding 435-36 chr8 78396329 78396775 + 2 NA Intergenic L1MB7|LINE|L1 -119788 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 207.5-18 chr2 63418850 63418969 + 2 NA intron (NR_148704, intron 10 of 18) intron (NR_148704, intron 10 of 18) 19098 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 357-28 chr3 136753692 136753981 + 2 NA Intergenic Intergenic -1458 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 356-8 chr12 54480536 54481004 + 2 NA Intergenic Intergenic -7168 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 198 chr1 204883115 204883280 + 2 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) 54543 NM_015090 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 408.5-15 chr21 30291267 30291636 + 2 NA Intergenic Intergenic -1937 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 491-26 chr7 28248654 28249162 + 2 NA Intergenic L1MB3|LINE|L1 -50413 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 370.5-21 chr5 22893314 22893633 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -40129 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 501-15 chr4 71259004 71259444 + 2 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) 71938 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 456-35 chr8 111389959 111390241 + 2 NA intron (NR_146282, intron 2 of 3) MIRb|SINE|MIR 13461 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 410-30 chr7 31268341 31268923 + 2 NA Intergenic Intergenic 72094 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 144.5-18 chr5 125528340 125528470 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 35144 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 398-34 chr7 50125822 50126032 + 2 NA intron (NM_001161834, intron 2 of 8) L1MA9|LINE|L1 29841 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 288-5 chr11 104151384 104151566 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 12672 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 315-17 chr2 193312418 193312647 + 2 NA Intergenic L1MEj|LINE|L1 562687 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 350-3 chr10 961012 961274 + 2 NA Intergenic L1MCa|LINE|L1 -27291 NM_012341 23560 Hs.215766 NM_012341 ENSG00000107937 GTPBP4 CRFG|NGB|NOG1 GTP binding protein 4 protein-coding 732-10 chr3 28154704 28155313 + 2 NA Intergenic Intergenic -86611 NM_182523 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 690-2 chr1 220104477 220104905 + 2 NA intron (NM_018060, intron 8 of 22) intron (NM_018060, intron 8 of 22) 10559 NM_018060 55699 Hs.262823 NM_018060 ENSG00000067704 IARS2 CAGSSS|ILERS isoleucyl-tRNA synthetase 2, mitochondrial protein-coding 351-39 chr7 116066362 116066650 + 2 NA Intergenic Intergenic -35743 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 267-30 chr3 174300156 174300316 + 2 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -379440 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 425-4 chr1 163131547 163131814 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -29995 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 431.5-21 chr7 96711643 96712003 + 2 NA Intergenic Intergenic -1932 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 344-16 chr15 65890972 65891294 + 2 NA 3' UTR (NM_001206836, exon 5 of 5) 3' UTR (NM_001206836, exon 5 of 5) 21642 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 258-27 chr7 91125749 91125958 + 2 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -138580 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 429.5-21 chr8 141585894 141586148 + 2 NA Intergenic MER4E|LTR|ERV1 -78791 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 213 chr1 61315376 61315500 + 2 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -61920 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 399.5-11 chr2 193381273 193381714 + 2 NA Intergenic Intergenic 631648 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 523-23 chr5 64973294 64973640 + 2 NA intron (NM_001297644, intron 12 of 12) intron (NM_001297644, intron 12 of 12) 204537 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 117-2 chr7 44337005 44337110 + 2 NA Intergenic L1MEf|LINE|L1 -11426 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 140.5-22 chr8 58124688 58124778 + 2 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 130210 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 939-5 chr5 14289769 14290419 + 2 NA intron (NM_007118, intron 4 of 56) intron (NM_007118, intron 4 of 56) 146752 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 302-11 chr14 46631604 46631761 + 2 NA Intergenic Intergenic 20099 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 243.5-32 chr8 124559915 124560137 + 2 NA intron (NM_001363298, intron 10 of 13) intron (NM_001363298, intron 10 of 13) 20903 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 404-21 chr2 27007778 27008204 + 2 NA intron (NR_149018, intron 1 of 5) MER110-int|LTR|ERV1 6597 NR_149018 100129724 Hs.666730 NR_149018 ENSG00000205500 LOC100129724 - uncharacterized LOC100129724 ncRNA 625-5 chr16 77781697 77782163 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -6634 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 255-8 chr17 72061116 72061259 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -3453 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 362.5-10 chr12 26833580 26833797 + 2 NA promoter-TSS (NM_002223) promoter-TSS (NM_002223) -494 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 219-27 chr5 39681676 39681874 + 2 NA Intergenic L1MB2|LINE|L1 161344 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 385-4 chr10 105596379 105596724 + 2 NA Intergenic Intergenic 223782 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 179-9 chr18 72603468 72603574 + 2 NA Intergenic Intergenic -59179 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 300.5-10 chr12 32613401 32613617 + 2 NA intron (NM_001370297, intron 8 of 14) AluJo|SINE|Alu -65691 NM_012063 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 194-21 chr7 34836817 34836979 + 2 NA intron (NM_207172, intron 6 of 8) intron (NM_207172, intron 6 of 8) -2567 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 659-4 chr13 51104004 51104462 + 2 NA intron (NR_102432, intron 1 of 3) intron (NR_102432, intron 1 of 3) 6995 NM_001351589 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 370-25 chr3 161115411 161115672 + 2 NA Intergenic L1MCa|LINE|L1 -10169 NM_001349146 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 245-32 chr5 170675838 170676030 + 2 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) 5536 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 204-15 chr3 35347341 35347646 + 2 NA intron (NR_110817, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 46530 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 440.5-26 chr9 96600508 96600728 + 2 NA intron (NR_147239, intron 1 of 14) AluSz|SINE|Alu 19225 NM_033331 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 290-24 chr4 106709900 106710075 + 2 NA Intergenic Intergenic 276363 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 324-20 chr2 161329665 161329917 + 2 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 21366 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 274-34 chr7 49289730 49289953 + 2 NA Intergenic Intergenic 365294 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 236.5-25 chr3 123449325 123449576 + 2 NA promoter-TSS (NM_183357) promoter-TSS (NM_183357) -905 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 222-21 chr3 190913097 190913269 + 2 NA Intergenic Intergenic 35253 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 499.5-18 chr5 23195869 23196174 + 2 NA Intergenic Intergenic -311588 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 518-6 chr12 46349997 46350304 + 2 NA Intergenic Intergenic 22623 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 199-17 chr4 106303387 106303561 + 2 NA intron (NM_001290768, intron 2 of 26) Charlie4z|DNA|hAT-Charlie -12136 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 720.5-9 chr7 68209988 68210691 + 2 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat 190086 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 450-20 chr7 51183322 51183760 + 2 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 133268 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 316-39 chr6 136679599 136679948 + 2 NA intron (NM_005923, intron 7 of 29) L1ME4a|LINE|L1 50659 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 703.5-4 chr2 42497757 42498330 + 2 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) 3474 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 250-17 chr2 24784251 24784387 + 2 NA Intergenic Intergenic -8796 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 501-10 chr2 186347733 186348009 + 2 NA Intergenic MIRb|SINE|MIR -138389 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 426.5-6 chr10 79476276 79476692 + 2 NA Intergenic L1MC3|LINE|L1 -30860 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 339.5-22 chr5 81766930 81767272 + 2 NA Intergenic Intergenic -15848 NM_012446 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 433-34 chr9 97868197 97868560 + 2 NA Intergenic L1M4|LINE|L1 15152 NM_004473 2304 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 413-27 chr22 43448306 43448849 + 2 NA intron (NM_001362786, intron 3 of 6) intron (NM_001362786, intron 3 of 6) 32025 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 294-23 chr2 216983017 216983343 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 112408 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 281-22 chr2 56171423 56171698 + 2 NA Intergenic Intergenic -12430 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 573-5 chr14 79307304 79307736 + 2 NA intron (NM_001105250, intron 1 of 6) MLT1F|LTR|ERVL-MaLR 28140 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 221-13 chr22 40362555 40362668 + 2 NA intron (NR_134256, intron 9 of 12) L2c|LINE|L2 -7983 NM_015705 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 552-23 chr8 122124201 122124533 + 2 NA Intergenic MER74B|LTR|ERVL 444277 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 358.5-6 chr14 64918278 64918496 + 2 NA intron (NM_001204063, intron 1 of 3) L3|LINE|CR1 3932 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 324-38 chr8 82760713 82760989 + 2 NA Intergenic Intergenic -151253 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 413-19 chr2 74014575 74014829 + 2 NA intron (NM_001287491, intron 3 of 11) intron (NM_001287491, intron 3 of 11) 12010 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 339.5-17 chr20 51425074 51425387 + 2 NA intron (NM_012340, intron 9 of 10) intron (NM_012340, intron 9 of 10) 27747 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 589-10 chr3 62288516 62288920 + 2 NA intron (NM_002841, intron 28 of 29) L1MC5|LINE|L1 30229 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 258-10 chr2 47581346 47581579 + 2 NA Intergenic Intergenic -11131 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 896.5-4 chr5 148364474 148365150 + 2 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 19038 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 132-3 chr7 33410969 33411076 + 2 NA intron (NM_001348037, intron 18 of 20) (T)n|Simple_repeat|Simple_repeat 281458 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 274-8 chr11 10003898 10004166 + 2 NA intron (NM_030962, intron 6 of 39) intron (NM_030962, intron 6 of 39) 164890 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 199 chr10 22939893 22940073 + 2 NA intron (NM_001282747, intron 2 of 15) L1MEc|LINE|L1 11930 NM_001282745 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 433-36 chrX 80719880 80720379 + 2 NA intron (NM_153252, intron 17 of 40) Tigger3b|DNA|TcMar-Tigger 89748 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 377-32 chr8 101103864 101104344 + 2 NA Intergenic Intergenic 52050 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 395.5-33 chr9 136018573 136019114 + 2 NA intron (NM_144653, intron 2 of 5) intron (NM_144653, intron 2 of 5) -57470 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 405-10 chr13 76760889 76761220 + 2 NA Intergenic Intergenic 125351 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 732-3 chr14 83470127 83470911 + 2 NA Intergenic Intergenic 827887 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 243 chr1 78061227 78061548 + 2 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 15421 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 253-17 chr22 24756435 24756628 + 2 NA non-coding (NR_045648, exon 6 of 22) non-coding (NR_045648, exon 6 of 22) -7970 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 372.5-11 chr2 50511390 50511750 + 2 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) -163814 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 530-4 chr1 169373452 169373914 + 2 NA intron (NM_003666, intron 2 of 7) intron (NM_003666, intron 2 of 7) 5488 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 354.5 chr1 84708837 84709036 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -18468 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 218-37 chr8 124634992 124635159 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 93398 NM_001363297 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 185-9 chr7 16336482 16336575 + 2 NA intron (NM_001101417, intron 2 of 8) L1M1|LINE|L1 85010 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 408-22 chr2 76444592 76444890 + 2 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -541224 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 593.5-11 chr9 86138876 86139620 + 2 NA intron (NR_110996, intron 2 of 4) Tigger17a|DNA|TcMar-Tigger 11708 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 503-25 chr5 142512516 142512920 + 2 NA Intergenic L2a|LINE|L2 108616 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 760-6 chr5 13352608 13353270 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -320053 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 370-35 chr8 140708564 140708904 + 2 NA intron (NR_148037, intron 25 of 34) intron (NR_148037, intron 25 of 34) 9835 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 433.5-14 chr2 11584111 11584455 + 2 NA intron (NM_014668, intron 7 of 32) intron (NM_014668, intron 7 of 32) 41597 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 329-26 chr4 57839194 57839481 + 2 NA Intergenic Intergenic 413465 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 265.5-44 chr9 36382166 36382492 + 2 NA intron (NM_194332, intron 1 of 10) intron (NM_194332, intron 1 of 10) 17940 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 498.5-8 chr2 52315559 52315874 + 2 NA intron (NR_135237, intron 7 of 10) L2c|LINE|L2 -54932 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 317.5-26 chr4 83980830 83981176 + 2 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 318166 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 485-11 chr20 47679186 47679446 + 2 NA intron (NM_198596, intron 7 of 20) intron (NM_198596, intron 7 of 20) 106748 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 481-3 chr10 101681551 101681906 + 2 NA intron (NM_001323541, intron 1 of 8) (AAT)n|Simple_repeat|Simple_repeat 13442 NM_022039 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 329-29 chr5 175499297 175499505 + 2 NA intron (NM_001322982, intron 2 of 10) L1M6|LINE|L1 20841 NM_001322983 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 217-6 chr14 63935450 63935679 + 2 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 82560 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 586-14 chr5 53075760 53076272 + 2 NA intron (NR_073103, intron 23 of 28) intron (NR_073103, intron 23 of 28) 33741 NM_004531 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 358.5-9 chr2 19415848 19416204 + 2 NA Intergenic Intergenic -57403 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 570.5-5 chr12 26112494 26113016 + 2 NA Intergenic L2a|LINE|L2 12282 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 467-18 chr4 14908269 14908659 + 2 NA Intergenic L1MEd|LINE|L1 -20295 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 206-23 chr7 32875894 32876036 + 2 NA intron (NM_015483, intron 2 of 3) L1MB8|LINE|L1 15795 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 425.5-15 chr4 33613379 33613621 + 2 NA Intergenic Intergenic 426393 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 522-12 chr16 52901480 52901848 + 2 NA Intergenic Intergenic 151209 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 319.5-7 chr12 40831877 40832229 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 4115 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 201-12 chr18 2816832 2817075 + 2 NA Intergenic MER21B|LTR|ERVL -30053 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 525.5-16 chr7 11861371 11861690 + 2 NA Intergenic Intergenic -29332 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 427.5-14 chr16 65787592 65788056 + 2 NA Intergenic Intergenic -211524 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 238.5-35 chr6 54574732 54574970 + 2 NA Intergenic Intergenic 266410 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 223.5-30 chr4 132921980 132922134 + 2 NA Intergenic MER76-int|LTR|ERVL 227059 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 434.5-8 chr16 17589857 17590198 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -119067 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 373.5-21 chr5 76108645 76108842 + 2 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 25360 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 578-18 chr4 32805292 32805604 + 2 NA Intergenic Intergenic 454410 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 223-23 chr2 193141494 193141695 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 391749 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 506.5-13 chr7 22427747 22428240 + 2 NA intron (NM_207342, intron 4 of 4) LTR16|LTR|ERVL -70839 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 353-36 chr7 52724704 52724986 + 2 NA Intergenic Intergenic -310788 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 314-35 chr6 101892511 101892809 + 2 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 493675 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 473.5-5 chr14 84480008 84480516 + 2 NA Intergenic L1ME1|LINE|L1 -791670 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 295-5 chr1 200613977 200614267 + 2 NA intron (NM_001305792, intron 2 of 27) intron (NM_001305792, intron 2 of 27) 4716 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 195-11 chr19 31136355 31136507 + 2 NA Intergenic L1ME1|LINE|L1 -31079 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 530.5-12 chr5 140755563 140756110 + 2 NA Intergenic L1M2|LINE|L1 29677 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 311.5-14 chr11 93386536 93386780 + 2 NA intron (NM_181645, intron 8 of 13) intron (NM_181645, intron 8 of 13) 55941 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 404-5 chr1 198182804 198183274 + 2 NA intron (NM_133494, intron 1 of 9) intron (NM_133494, intron 1 of 9) 26041 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 336-17 chr14 64540153 64540377 + 2 NA promoter-TSS (NM_021979) promoter-TSS (NM_021979) 103 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 376.5-7 chr14 73889360 73889795 + 2 NA intron (NR_040251, intron 1 of 11) MIRc|SINE|MIR 2718 NM_001242924 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 469-21 chr5 27062079 27062537 + 2 NA Intergenic LTR16B1|LTR|ERVL -23722 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 370-18 chr2 58826596 58826805 + 2 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 305947 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 170-10 chr16 80106044 80106237 + 2 NA Intergenic Intergenic 310891 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 257-4 chr10 13991193 13991364 + 2 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 17272 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 233-22 chr4 63320367 63320623 + 2 NA Intergenic Intergenic 1088955 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 236-18 chr2 169852465 169852643 + 2 NA intron (NM_172070, intron 1 of 38) intron (NM_172070, intron 1 of 38) 25046 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 376.5-18 chr20 45740907 45741188 + 2 NA Intergenic AluJb|SINE|Alu 18700 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 236-2 chr1 216331301 216331511 + 2 NA intron (NM_206933, intron 4 of 71) intron (NM_206933, intron 4 of 71) 91990 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 398-22 chr22 26254353 26254693 + 2 NA intron (NM_001184776, intron 1 of 14) FRAM|SINE|Alu 85049 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 310-30 chr4 34116649 34116875 + 2 NA Intergenic MIRb|SINE|MIR -76869 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 347.5-17 chr2 155655323 155655763 + 2 NA Intergenic Intergenic 599388 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 234.5-28 chr7 4079023 4079183 + 2 NA intron (NM_152744, intron 21 of 44) intron (NM_152744, intron 21 of 44) -50582 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 508-3 chr13 84206898 84207218 + 2 NA intron (NR_046871, intron 1 of 6) L2a|LINE|L2 66456 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 252.5-10 chr15 86053940 86054113 + 2 NA Intergenic Intergenic -25594 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 494.5-9 chr22 26841382 26841660 + 2 NA Intergenic MIR3|SINE|MIR -18690 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 436-14 chr19 39288163 39288589 + 2 NA Intergenic L1MD2|LINE|L1 -8031 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 178.5-18 chr5 127733686 127733865 + 2 NA intron (NM_001317938, intron 2 of 6) intron (NM_001317938, intron 2 of 6) 30386 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 589-13 chr4 35785024 35785591 + 2 NA Intergenic Intergenic 458632 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 233.5-29 chr7 50567596 50567862 + 2 NA Intergenic MLT2B2|LTR|ERVL -2324 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 396-36 chr9 120484758 120485067 + 2 NA intron (NR_073558, intron 14 of 37) AluJr|SINE|Alu 95255 NM_001011649 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 408-6 chr10 82202104 82202348 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 30694 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 333.5-16 chr22 40804162 40804498 + 2 NA intron (NM_006358, intron 1 of 8) intron (NM_006358, intron 1 of 8) 9628 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 300-5 chr1 241061230 241061505 + 2 NA intron (NM_001350116, intron 3 of 16) MamTip1|DNA|hAT-Tip100 -70905 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 514.5-12 chr20 10852067 10852370 + 2 NA Intergenic L2a|LINE|L2 57054 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 403.5-4 chr10 117630223 117630558 + 2 NA Intergenic Intergenic -85322 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 418.5-8 chr12 53133802 53134111 + 2 NA Intergenic AluJb|SINE|Alu 30470 NM_003578 8435 Hs.656544 NM_003578 ENSG00000167780 SOAT2 ACACT2|ACAT2|ARGP2 sterol O-acyltransferase 2 protein-coding 260-29 chr5 73738912 73739152 + 2 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) -74514 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 115.5-3 chr11 29010743 29010892 + 2 NA Intergenic L2a|LINE|L2 -533269 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 225-18 chr2 18784598 18784777 + 2 NA Intergenic L1MD3|LINE|L1 -195107 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 1485.5 chr11 14160404 14161417 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 197575 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 208.5-10 chr2 58836144 58836278 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 315458 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 579-9 chr2 26190302 26190750 + 2 NA TTS (NM_000182) TTS (NM_000182) 9810 NM_001191033 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 459-16 chr20 22558483 22558885 + 2 NA Intergenic Intergenic 19958 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 543-7 chr22 43574304 43574709 + 2 NA intron (NM_198856, intron 24 of 29) intron (NM_198856, intron 24 of 29) 58252 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 653-2 chr1 186114907 186115253 + 2 NA intron (NM_031935, intron 74 of 106) intron (NM_031935, intron 74 of 106) -181193 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 277-36 chr4 74011705 74011869 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -13110 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 449-31 chr7 40495581 40495899 + 2 NA intron (NM_024728, intron 11 of 14) intron (NM_024728, intron 11 of 14) 360764 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 343.5-34 chr9 26623501 26623752 + 2 NA Intergenic Intergenic 269176 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 246.5-38 chr7 47546692 47546914 + 2 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 35308 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 253.5-2 chr1 199140207 199140395 + 2 NA Intergenic Intergenic -8297 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 440.5-13 chr2 47766916 47767488 + 2 NA Intergenic AluSq|SINE|Alu -15880 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 362-22 chr20 16836683 16836948 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 88462 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 173.5-18 chr5 118850030 118850120 + 2 NA intron (NM_001308081, intron 4 of 5) L1PA16|LINE|L1 -124511 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 453-13 chr18 79365921 79366246 + 2 NA intron (NR_148360, intron 27 of 31) L1MC4a|LINE|L1 -29847 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 318-31 chr4 83577420 83577603 + 2 NA intron (NM_001256421, intron 3 of 12) L1MC4|LINE|L1 41403 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 347-29 chr8 142918360 142918647 + 2 NA promoter-TSS (NM_000498) promoter-TSS (NM_000498) -660 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 420-33 chr5 127799606 127800002 + 2 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 96415 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 355-42 chr7 92319505 92319820 + 2 NA intron (NM_019004, intron 4 of 19) intron (NM_019004, intron 4 of 19) -73562 NM_001350689 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 359.5 chr1 34207464 34207801 + 2 NA intron (NM_032884, intron 4 of 6) intron (NM_032884, intron 4 of 6) 30725 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 351.5-22 chr6 143494054 143494296 + 2 NA TTS (NM_032020) TTS (NM_032020) 17545 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 248.5-23 chr5 116886418 116886591 + 2 NA Intergenic Intergenic -124295 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 270-2 chr10 15329000 15329173 + 2 NA intron (NM_001010924, intron 1 of 7) intron (NM_001010924, intron 1 of 7) 42203 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 451.5-11 chr2 65897086 65897675 + 2 NA Intergenic Intergenic 460948 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 223-11 chr14 69313119 69313351 + 2 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 53077 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 204-18 chr5 45169853 45169970 + 2 NA Intergenic L1MA10|LINE|L1 360964 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 215-5 chr10 31104187 31104346 + 2 NA Intergenic Intergenic -72329 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 340-23 chr2 99374782 99374985 + 2 NA intron (NM_015904, intron 9 of 23) L1MEg|LINE|L1 37494 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 389.5-18 chr3 74073004 74073290 + 2 NA Intergenic L2a|LINE|L2 263903 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 436-18 chr2 99569525 99570196 + 2 NA intron (NM_001025108, intron 17 of 23) intron (NM_001025108, intron 17 of 23) -79843 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 540-25 chr8 119180060 119180588 + 2 NA Intergenic L1MB8|LINE|L1 -28039 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 394-24 chr7 70311162 70311510 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 712861 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 505-4 chr12 1125974 1126315 + 2 NA intron (NR_027948, intron 6 of 19) L1MB2|LINE|L1 98396 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 449-2 chr1 83012670 83012998 + 2 NA intron (NR_147074, intron 5 of 10) MER45C|DNA|hAT-Tip100 -26626 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 367-28 chr5 123593896 123594171 + 2 NA intron (NM_001364145, intron 8 of 10) MIRb|SINE|MIR 48616 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 422-5 chr11 30320776 30321047 + 2 NA Intergenic Intergenic -2193 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 367-29 chr6 39720894 39721123 + 2 NA intron (NM_001289020, intron 1 of 21) intron (NM_001289020, intron 1 of 21) 4400 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 492-23 chr22 47903121 47903492 + 2 NA Intergenic Intergenic 271632 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 183.5-9 chr13 101298029 101298192 + 2 NA intron (NM_001350749, intron 7 of 43) L4_C_Mam|LINE|RTE-X 118398 NM_001350749 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 363.5-3 chr11 31708127 31708370 + 2 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 92413 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 564.5-7 chr2 227953763 227954197 + 2 NA Intergenic Intergenic 82349 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 688-5 chr7 2704977 2705427 + 2 NA intron (NM_133463, intron 3 of 6) intron (NM_133463, intron 3 of 6) 17000 NM_001321766 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 225.5-8 chr10 76521979 76522151 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -365979 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 402-33 chr7 50758470 50758782 + 2 NA intron (NM_001001555, intron 1 of 16) intron (NM_001001555, intron 1 of 16) 24270 NM_001371009 271-23 chr4 160839199 160839435 + 2 NA Intergenic Intergenic -1061533 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 295.5-21 chr5 35308924 35309118 + 2 NA Intergenic Intergenic -78534 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 285.5-32 chr8 24361460 24361602 + 2 NA intron (NR_125808, intron 3 of 5) LTR16A|LTR|ERVL -22754 NM_014479 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 309.5-22 chr5 114820500 114820809 + 2 NA Intergenic L1ME1|LINE|L1 -47241 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 418.5-21 chr4 111945737 111945946 + 2 NA Intergenic Intergenic -199613 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 420-23 chr21 27182470 27182780 + 2 NA Intergenic MLT2B1|LTR|ERVL -215537 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 432.5-4 chr11 96965306 96965584 + 2 NA Intergenic L1M1|LINE|L1 457020 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 371.5-28 chr8 130713340 130713628 + 2 NA Intergenic L1MA10|LINE|L1 -269810 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 298-5 chr10 71963415 71963713 + 2 NA promoter-TSS (NM_004273) promoter-TSS (NM_004273) -831 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 513-21 chr3 67505114 67505507 + 2 NA intron (NM_001177599, intron 7 of 10) MLT1K|LTR|ERVL-MaLR 149304 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 327-33 chr22 20094945 20095168 + 2 NA intron (NM_022720, intron 9 of 13) intron (NM_022720, intron 9 of 13) 8998 NR_031706 100302197 NR_031706 ENSG00000284464 MIR1306 MIRN1306|hsa-mir-1306|mir-1306 microRNA 1306 ncRNA 324-31 chr4 154042663 154042901 + 2 NA Intergenic MIRb|SINE|MIR -253699 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 145-3 chr12 49375585 49375725 + 2 NA intron (NM_023071, intron 2 of 13) intron (NM_023071, intron 2 of 13) 8750 NM_001293285 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 247-14 chr22 28147110 28147288 + 2 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -226587 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 218-34 chr7 131934942 131935128 + 2 NA intron (NR_110836, intron 5 of 5) intron (NR_110836, intron 5 of 5) 24815 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 814.5-6 chr4 76943836 76944381 + 2 NA Intergenic Intergenic -5644 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 612-5 chr12 83737935 83738295 + 2 NA Intergenic Intergenic 1050960 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 189-23 chr7 20757844 20757948 + 2 NA TTS (NM_001163941) TTS (NM_001163941) 28990 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 660.5-6 chr3 103762134 103762464 + 2 NA Intergenic L3|LINE|CR1 -238183 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 209.5-27 chr6 84887014 84887204 + 2 NA Intergenic Intergenic -122511 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 352.5-13 chr17 53716524 53716914 + 2 NA Intergenic L1PA15|LINE|L1 -106208 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 344.5-27 chr6 40593434 40593909 + 2 NA Intergenic L2b|LINE|L2 -6307 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 448.5-12 chr3 9810569 9810818 + 2 NA non-coding (NR_037162, exon 1 of 11) non-coding (NR_037162, exon 1 of 11) 431 NR_037162 26140 Hs.726435 NM_015644 ENSG00000214021 TTLL3 HOTTL tubulin tyrosine ligase like 3 protein-coding 446-18 chr19 31383575 31383941 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -34322 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 413.5-25 chr9 11881979 11882303 + 2 NA Intergenic Intergenic -811244 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 437 chr1 84628683 84628959 + 2 NA non-coding (NR_027379, exon 3 of 3) non-coding (NR_027379, exon 3 of 3) 6199 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 274.5-14 chr2 142917506 142917667 + 2 NA intron (NM_001199241, intron 3 of 14) AluJo|SINE|Alu 39922 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 243-10 chr14 62187463 62187618 + 2 NA Intergenic LTR33|LTR|ERVL -47567 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 519.5-10 chr21 24356716 24357027 + 2 NA Intergenic L1PA14|LINE|L1 -35494 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 328.5-35 chr8 133366684 133366936 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -69506 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 150.5-16 chr3 186396011 186396106 + 2 NA Intergenic Intergenic -33824 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 272-18 chr2 178862113 178862276 + 2 NA intron (NM_173648, intron 17 of 23) intron (NM_173648, intron 17 of 23) -54771 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 300.5-40 chr9 82900328 82900703 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 162627 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 579.5-6 chr2 150652864 150653320 + 2 NA Intergenic Intergenic 24195 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 264.5-4 chr1 238012410 238012572 + 2 NA Intergenic Intergenic -121569 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 248-6 chr15 47922337 47922604 + 2 NA Intergenic Intergenic -76234 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 385-40 chr8 108454598 108454794 + 2 NA intron (NR_138033, intron 4 of 9) L1MCa|LINE|L1 11072 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 411-26 chr3 45834545 45834948 + 2 NA intron (NM_001276379, intron 4 of 9) intron (NM_001276379, intron 4 of 9) 7373 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 244.5-7 chr12 9364160 9364409 + 2 NA Intergenic LTR46|LTR|ERV1 -3180 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 450-18 chr6 113796116 113796406 + 2 NA Intergenic MLT2F|LTR|ERVL -61084 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 215.5-6 chr10 13758727 13758834 + 2 NA intron (NM_001318336, intron 7 of 23) MER61C|LTR|ERV1 -51213 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 245-11 chr14 31851140 31851321 + 2 NA intron (NM_001201573, intron 8 of 8) (T)n|Simple_repeat|Simple_repeat -93623 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 232-12 chr12 40676752 40676994 + 2 NA Intergenic L1MC4|LINE|L1 -15566 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 913-2 chr15 93893426 93894127 + 2 NA Intergenic Intergenic 6823 NR_138083 283682 Hs.134687 NR_138083 LINC01579 - long intergenic non-protein coding RNA 1579 ncRNA 452.5-22 chr8 124265340 124265754 + 2 NA Intergenic AluJr|SINE|Alu -18149 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 433.5-9 chr16 83401628 83402122 + 2 NA intron (NM_001220489, intron 5 of 12) MER20B|DNA|hAT-Charlie -106471 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 377-25 chr4 164917363 164917629 + 2 NA Intergenic Intergenic -39452 NR_160935 152756 Hs.178648 NM_153027 ENSG00000250486 FAM218A C4orf39 family with sequence similarity 218 member A ncRNA 463-2 chr1 89383998 89384246 + 2 NA exon (NM_001320257, exon 8 of 9) exon (NM_001320257, exon 8 of 9) 20245 NM_001320257 163351 Hs.254338 NM_198460 ENSG00000183347 GBP6 - guanylate binding protein family member 6 protein-coding 338-22 chr20 42232343 42232628 + 2 NA intron (NM_133170, intron 16 of 31) MER5A1|DNA|hAT-Charlie -452998 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 179-23 chr9 122436810 122436965 + 2 NA Intergenic L1ME3A|LINE|L1 41039 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 953.5 chr7 132912707 132913241 + 2 NA intron (NM_001317177, intron 4 of 8) intron (NM_001317177, intron 4 of 8) 121941 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 322.5-5 chr10 89734160 89734335 + 2 NA intron (NM_016195, intron 19 of 32) AluSq2|SINE|Alu 32657 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 472-22 chr8 10462396 10462736 + 2 NA Intergenic L1M5|LINE|L1 -11999 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 570-12 chr15 60573248 60573583 + 2 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) 19111 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 419-32 chrX 121951009 121951281 + 2 NA Intergenic L1MB1|LINE|L1 580173 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 247.5-2 chr1 69597885 69598144 + 2 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 28673 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 449-21 chr3 155695951 155696336 + 2 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) 8121 NM_014996 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 658-14 chr8 105153368 105153992 + 2 NA Intergenic L3|LINE|CR1 -164758 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 326-37 chr8 10920386 10920616 + 2 NA intron (NM_173683, intron 2 of 2) intron (NM_173683, intron 2 of 2) 80475 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 275-13 chr14 90961192 90961456 + 2 NA intron (NM_001322238, intron 1 of 14) MIR|SINE|MIR 98800 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 130-4 chr17 33421549 33421636 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 112168 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 764.5-2 chrX 152960640 152961070 + 2 NA intron (NM_007150, intron 17 of 22) intron (NM_007150, intron 17 of 22) 19184 NM_001178115 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 156-4 chr10 85829503 85829646 + 2 NA intron (NM_017551, intron 8 of 15) L1PA15|LINE|L1 251843 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 239-23 chr5 23566458 23566685 + 2 NA Intergenic L1MC3|LINE|L1 58916 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 285.5-33 chr8 90524153 90524310 + 2 NA Intergenic L2a|LINE|L2 81832 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 203 chr10 61804341 61804503 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -97277 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 759-5 chr5 13497631 13498052 + 2 NA Intergenic L1MA8|LINE|L1 446639 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 458-24 chr4 147763503 147763928 + 2 NA intron (NM_024605, intron 1 of 22) MER5B|DNA|hAT-Charlie -18880 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 533-2 chr1 196445352 196445838 + 2 NA intron (NM_001287820, intron 8 of 26) intron (NM_001287820, intron 8 of 26) 136886 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 319-34 chr5 74213731 74213978 + 2 NA Intergenic MIR|SINE|MIR 94471 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 238-13 chr12 51300508 51300632 + 2 NA intron (NM_001290008, intron 4 of 11) MIR3|SINE|MIR 23604 NM_001364780 51411 Hs.14770 NM_016293 ENSG00000110934 BIN2 BRAP-1 bridging integrator 2 protein-coding 166.5-22 chr8 88300595 88300726 + 2 NA intron (NM_005941, intron 1 of 9) Tigger7|DNA|TcMar-Tigger 26823 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 654-3 chr1 213476218 213476655 + 2 NA Intergenic Intergenic 425195 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 407-7 chr11 69933895 69934306 + 2 NA Intergenic L1MB7|LINE|L1 -114684 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 457.5-28 chr8 57105606 57106177 + 2 NA Intergenic L1MA1|LINE|L1 -112024 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 241.5-19 chr2 63585887 63586165 + 2 NA intron (NR_148704, intron 1 of 18) AluJr|SINE|Alu 2451 NR_148705 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 194.5-11 chr14 44730636 44730799 + 2 NA Intergenic L1MB2|LINE|L1 68409 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 192-13 chr2 55609871 55609989 + 2 NA intron (NM_020463, intron 2 of 14) L1ME4b|LINE|L1 7692 NM_001282850 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 544.5-13 chr8 90291744 90292292 + 2 NA intron (NR_051989, intron 2 of 3) L2a|LINE|L2 70530 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 325-31 chr8 50109605 50109825 + 2 NA intron (NR_135798, intron 1 of 15) LTR60B|LTR|ERV1 -54416 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 402-38 chr8 133367086 133367596 + 2 NA Intergenic L2a|LINE|L2 -70037 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 383-7 chr12 19863280 19863593 + 2 NA Intergenic Intergenic -151249 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 437-24 chr2 38741328 38741579 + 2 NA Intergenic AluJb|SINE|Alu 9908 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 219-11 chr12 86795600 86795710 + 2 NA intron (NM_001351286, intron 1 of 7) GA-rich|Low_complexity|Low_complexity 43345 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 329.5-6 chr12 53714635 53714878 + 2 NA intron (NM_001143682, intron 9 of 13) (TGGAACC)n|Simple_repeat|Simple_repeat 12696 NM_001143682 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 510.5 chr1 207232814 207233387 + 2 NA Intergenic Intergenic -88578 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 300-35 chr9 96222627 96222827 + 2 NA Intergenic Intergenic -23736 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 296-6 chr11 23017617 23017845 + 2 NA Intergenic PABL_B-int|LTR|ERV1 -157257 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 210-24 chr8 115824434 115824613 + 2 NA Intergenic L1M4b|LINE|L1 -155548 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 156-12 chr2 42708059 42708188 + 2 NA intron (NM_001330443, intron 13 of 16) intron (NM_001330443, intron 13 of 16) 56138 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 511.5-14 chr2 235765981 235766388 + 2 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) -248263 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 514.5-4 chr14 50221771 50222094 + 2 NA intron (NM_006939, intron 1 of 22) Charlie2b|DNA|hAT-Charlie 9646 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 462-13 chr13 112523050 112523406 + 2 NA intron (NM_006322, intron 13 of 21) intron (NM_006322, intron 13 of 21) 64925 NM_001286277 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 662.5-4 chr2 108573788 108574299 + 2 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) -14263 NM_004987 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 306.5-21 chr20 7249099 7249328 + 2 NA intron (NR_110609, intron 2 of 7) intron (NR_110609, intron 2 of 7) 4989 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 208-8 chr15 70819262 70819462 + 2 NA Intergenic L1ME1|LINE|L1 -33877 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 269-30 chr6 54560374 54560643 + 2 NA Intergenic Intergenic 252067 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 440.5-14 chr2 72562419 72562855 + 2 NA intron (NR_135774, intron 7 of 19) intron (NR_135774, intron 7 of 19) 263396 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 197 chr1 20523907 20524100 + 2 NA Intergenic L2|LINE|L2 -15852 NM_024544 79594 Hs.10101 NM_024544 ENSG00000090432 MUL1 C1orf166|GIDE|MAPL|MULAN|RNF218 mitochondrial E3 ubiquitin protein ligase 1 protein-coding 408-37 chr7 25790778 25791077 + 2 NA promoter-TSS (NR_157808) promoter-TSS (NR_157808) -808 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 323.5-8 chr10 103501776 103501937 + 2 NA intron (NR_120675, intron 2 of 3) AluSq2|SINE|Alu 8151 NM_004210 9148 Hs.594708 NM_004210 ENSG00000107954 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 246.5-17 chr2 44956517 44956753 + 2 NA Intergenic Intergenic -14757 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 285-13 chr13 90312836 90312991 + 2 NA Intergenic LTR50|LTR|ERVL 81731 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 710-9 chr22 46125648 46126385 + 2 NA Intergenic Intergenic 12330 NR_029479 406884 NR_029479 ENSG00000284520 MIRLET7B LET7B|MIRNLET7B|hsa-let-7b|let-7b microRNA let-7b ncRNA 215.5-30 chr3 143552181 143552431 + 2 NA intron (NM_173653, intron 9 of 15) intron (NM_173653, intron 9 of 15) 210060 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 211.5-32 chr6 109349596 109349750 + 2 NA intron (NR_152435, intron 44 of 45) intron (NR_152435, intron 44 of 45) 32066 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 241-2 chr1 40014667 40014994 + 2 NA Intergenic AluSz|SINE|Alu -25235 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 289-35 chr4 112276019 112276289 + 2 NA 3' UTR (NM_052864, exon 2 of 2) 3' UTR (NM_052864, exon 2 of 2) 9750 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 261.5-6 chr10 126578403 126578643 + 2 NA intron (NM_001350922, intron 2 of 8) L1ME3A|LINE|L1 -57030 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 260-35 chr8 124995343 124995516 + 2 NA Intergenic AluSx|SINE|Alu 2769 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 346.5-24 chr4 140926145 140926384 + 2 NA intron (NM_020724, intron 4 of 6) intron (NM_020724, intron 4 of 6) -169879 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 720.5-2 chr1 72670339 72670911 + 2 NA Intergenic Intergenic -388086 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 250-32 chr5 7809944 7810201 + 2 NA intron (NM_020546, intron 22 of 24) intron (NM_020546, intron 22 of 24) 41061 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 357-32 chr4 44611008 44611342 + 2 NA Intergenic Intergenic 40466 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 475-11 chr17 8824180 8824510 + 2 NA intron (NM_001010855, intron 13 of 19) intron (NM_001010855, intron 13 of 19) -24980 NM_152599 162387 Hs.213603 NM_152599 ENSG00000185156 MFSD6L - major facilitator superfamily domain containing 6 like protein-coding 381-23 chr5 89425988 89426191 + 2 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -521984 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 221-19 chr5 28764416 28764670 + 2 NA Intergenic Intergenic -162327 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 153 chr1 151572632 151572737 + 2 NA intron (NM_020127, intron 7 of 12) intron (NM_020127, intron 7 of 12) 26888 NR_030280 693139 NR_030280 ENSG00000207606 MIR554 MIRN554|hsa-mir-554 microRNA 554 ncRNA 172-14 chr6 56266526 56266702 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -19034 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 466-12 chr14 59519902 59520236 + 2 NA intron (NM_001164399, intron 17 of 19) MLT1G3|LTR|ERVL-MaLR 35552 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 342-13 chr18 62248370 62248680 + 2 NA intron (NR_144409, intron 12 of 31) intron (NR_144409, intron 12 of 31) 61270 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 240-3 chr1 164738269 164738526 + 2 NA intron (NM_001204963, intron 2 of 8) AluJr4|SINE|Alu 36244 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 299-32 chr8 118187727 118187997 + 2 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -76043 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 409-25 chr5 53133510 53133899 + 2 NA Intergenic Intergenic 23862 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 161-11 chr3 168379419 168379548 + 2 NA intron (NR_021485, intron 3 of 15) L1MA2|LINE|L1 129961 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 245-17 chr17 73586182 73586305 + 2 NA intron (NM_001144952, intron 1 of 44) (CCT)n|Simple_repeat|Simple_repeat 58202 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 715-6 chr6 44150135 44150552 + 2 NA intron (NM_001318792, intron 17 of 23) intron (NM_001318792, intron 17 of 23) -8477 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 261.5-23 chr3 4911507 4911801 + 2 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -5153 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 150-3 chr12 67174916 67175058 + 2 NA Intergenic Intergenic -78703 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 320-30 chr7 50226963 50227377 + 2 NA Intergenic Intergenic -76894 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 267-10 chr14 49819718 49819911 + 2 NA intron (NM_001301732, intron 16 of 31) intron (NM_001301732, intron 16 of 31) 32974 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 345.5-23 chr3 196637597 196638032 + 2 NA Intergenic L2b|LINE|L2 -1880 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 241-8 chr14 49110161 49110314 + 2 NA Intergenic Intergenic 476143 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 164.5-10 chr16 72864177 72864294 + 2 NA intron (NM_001164766, intron 3 of 8) L2a|LINE|L2 183893 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 387-39 chr8 110589047 110589485 + 2 NA Intergenic Intergenic 438167 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 230-26 chr4 71878842 71879056 + 2 NA Intergenic Intergenic -73429 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 416-22 chr5 143757468 143757756 + 2 NA Intergenic MIRb|SINE|MIR -54549 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 301-3 chr1 172696274 172696530 + 2 NA Intergenic Intergenic 37299 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 299-5 chr10 33267691 33267987 + 2 NA intron (NR_045259, intron 2 of 15) intron (NR_045259, intron 2 of 15) 66828 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 283-49 chr9 126964551 126964730 + 2 NA intron (NM_001190729, intron 2 of 17) MIRb|SINE|MIR 2415 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 280.5-24 chr4 38023195 38023417 + 2 NA intron (NM_001253912, intron 6 of 20) intron (NM_001253912, intron 6 of 20) 62908 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 442.5-9 chr15 94145590 94146007 + 2 NA Intergenic Intergenic -37860 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 371-19 chr3 118991722 118991977 + 2 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 42997 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 674.5-8 chr7 13197286 13197861 + 2 NA Intergenic MER65-int|LTR|ERV1 509940 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 643-9 chr18 73509731 73510091 + 2 NA Intergenic L1MCa|LINE|L1 184970 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 682-10 chr21 29846417 29847039 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 93268 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 215-35 chr8 143008046 143008197 + 2 NA intron (NR_026913, intron 1 of 1) L1PA13|LINE|L1 10269 NR_026913 100133669 Hs.195309 NR_026913 LY6E-DT - LY6E divergent transcript ncRNA 336-47 chr8 110813428 110813720 + 2 NA Intergenic Intergenic 213859 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 489.5-16 chr5 37639493 37639864 + 2 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 195144 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 600-18 chr4 102997975 102998458 + 2 NA intron (NR_047515, intron 1 of 10) L1MB3|LINE|L1 21489 NM_139173 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 369-19 chr14 33408465 33408944 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -300233 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 377-3 chr1 235038643 235038868 + 2 NA Intergenic L1MCa|LINE|L1 31063 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 206.5-11 chr13 25199808 25200036 + 2 NA Intergenic L1MC5a|LINE|L1 18590 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 324-12 chr13 111350894 111351147 + 2 NA Intergenic L1ME1|LINE|L1 30378 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 218-13 chr15 70319461 70319639 + 2 NA Intergenic MIR|SINE|MIR 186378 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 410.5-10 chr2 156298703 156298916 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 33912 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 490-10 chr16 11003588 11003910 + 2 NA intron (NM_015226, intron 10 of 22) (ATT)n|Simple_repeat|Simple_repeat 59185 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 739-5 chr21 17592802 17593435 + 2 NA TTS (NM_006806).2 TTS (NM_006806).2 -18568 NR_149073 110806272 Hs.607138 NR_149073 ENSG00000280594 BTG3-AS1 ASBEL BTG3 antisense RNA 1 ncRNA 474-5 chr12 28149052 28149350 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -41255 NM_001352082 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 399-37 chr8 23699989 23700387 + 2 NA Intergenic Intergenic 6410 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 216.5-24 chr20 55207231 55207363 + 2 NA Intergenic L1MEd|LINE|L1 -215746 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 629-8 chr2 31875194 31875588 + 2 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -71411 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 192.5-13 chr2 69286653 69286811 + 2 NA Intergenic AluY|SINE|Alu 100495 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 424.5-4 chr11 96866011 96866289 + 2 NA Intergenic MER76-int|LTR|ERVL 357725 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 375-35 chr8 76238229 76238598 + 2 NA Intergenic Intergenic -168241 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 475-9 chr15 96347106 96347473 + 2 NA Intergenic Intergenic 13524 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 273.5-20 chr3 135977929 135978181 + 2 NA intron (NM_001190447, intron 1 of 12) L1MD3|LINE|L1 12327 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 722-4 chr7 25318298 25318980 + 2 NA Intergenic Intergenic -90153 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 210-22 chr7 39433980 39434210 + 2 NA intron (NM_001370959, intron 7 of 9) L2b|LINE|L2 -27749 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 478-9 chr14 37907376 37907750 + 2 NA Intergenic L1ME3A|LINE|L1 -5439 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 458.5-7 chr12 57830498 57830771 + 2 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) -5942 NR_029847 407016 NR_029847 ENSG00000207789 MIR26A2 MIRN26A2|mir-26a-2 microRNA 26a-2 ncRNA 421-21 chr20 39300339 39300685 + 2 NA Intergenic Intergenic -75764 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 476-14 chr17_KI270729v1_random 2186 2651 + 2 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 564.5-4 chr14 90343889 90344330 + 2 NA Intergenic L1ME3Cz|LINE|L1 -12168 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 283-14 chr16 20557283 20557549 + 2 NA intron (NM_182617, intron 4 of 14) L2b|LINE|L2 18951 NM_182617 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 275-8 chr10 102594413 102594593 + 2 NA intron (NM_001178133, intron 6 of 10) intron (NM_001178133, intron 6 of 10) -49992 NM_030912 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 300-10 chr2 79792370 79792560 + 2 NA intron (NM_001282598, intron 3 of 17) LTR40b|LTR|ERVL 74118 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 635-4 chr1 238979073 238979654 + 2 NA Intergenic Intergenic -407205 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 338.5-13 chr17 7716669 7716936 + 2 NA promoter-TSS (NM_001303270) promoter-TSS (NM_001303270) -942 NM_020877 146754 Hs.367649 NM_020877 ENSG00000183914 DNAH2 DNAHC2|DNHD3 dynein axonemal heavy chain 2 protein-coding 315.5-22 chr2 237634706 237634960 + 2 NA intron (NM_001137550, intron 1 of 23) HAL1|LINE|L1 7246 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 399.5-12 chr2 201659287 201659676 + 2 NA intron (NM_033066, intron 15 of 21) intron (NM_033066, intron 15 of 21) -15978 NM_001044385 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 578-5 chr10 90326419 90326857 + 2 NA Intergenic Intergenic 214167 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 326-39 chr8 139852694 139852980 + 2 NA intron (NM_001160372, intron 21 of 22) Charlie19a|DNA|hAT-Charlie -149714 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 236.5-12 chr13 39202144 39202336 + 2 NA Intergenic Intergenic 163784 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 501.5-4 chr1 115789488 115790050 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -20964 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 545.5-12 chr5 96932274 96932730 + 2 NA Intergenic Intergenic -3578 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 387-26 chr4 95458977 95459386 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 89792 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 311-25 chr5 31122947 31123113 + 2 NA Intergenic Intergenic -70656 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 363-3 chr1 227093596 227093873 + 2 NA intron (NM_001366019, intron 15 of 36) LTR56|LTR|ERV1 153440 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 264-27 chr8 48844584 48844761 + 2 NA Intergenic Intergenic 76757 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 317.5-24 chr4 67185247 67185432 + 2 NA Intergenic MIR|SINE|MIR 236661 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 458.5-17 chr7 112368876 112369198 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -54107 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 210-23 chr7 88021675 88021910 + 2 NA intron (NM_001324421, intron 3 of 28) Charlie24|DNA|hAT-Charlie 87541 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 236-11 chr17 29084318 29084493 + 2 NA intron (NM_001346767, intron 38 of 39) intron (NM_001346767, intron 38 of 39) -8796 NM_004740 9220 Hs.462590 NM_004740 ENSG00000221995 TIAF1 MAJN|SPR210 TGFB1-induced anti-apoptotic factor 1 protein-coding 419.5-20 chr7 81390427 81390760 + 2 NA Intergenic Intergenic 171226 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 535.5-15 chr7 40228345 40228860 + 2 NA intron (NM_024728, intron 6 of 14) L1MC5|LINE|L1 93626 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 313.5-35 chr6 65211670 65211956 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -89605 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 354.5-16 chr2 104357914 104358270 + 2 NA Intergenic MIRb|SINE|MIR 50240 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 387.5-21 chr5 128834849 128835137 + 2 NA Intergenic Intergenic -130134 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 272.5-3 chr1 241413154 241413304 + 2 NA Intergenic Intergenic -55999 NM_001282773 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 377-9 chr13 74166939 74167198 + 2 NA Intergenic Intergenic -33139 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 445-26 chr7 8949125 8949579 + 2 NA Intergenic Intergenic 515743 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 399-16 chr17 74111164 74111491 + 2 NA Intergenic Intergenic -92351 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 290.5-32 chr9 27926812 27927026 + 2 NA Intergenic Intergenic -353053 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 927-3 chr3 161147933 161148849 + 2 NA Intergenic MER41-int|LTR|ERV1 -43019 NM_001349146 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 301-5 chr1 239075117 239075398 + 2 NA Intergenic L1MA2|LINE|L1 -311311 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 314-12 chr15 83561200 83561494 + 2 NA intron (NM_001324185, intron 3 of 9) L1M5|LINE|L1 70733 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 386 chr1 28418640 28418874 + 2 NA intron (NM_001350160, intron 3 of 14) AluSx|SINE|Alu -19393 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 531.5-2 chr12 51503963 51504343 + 2 NA intron (NM_001039960, intron 23 of 24) intron (NM_001039960, intron 23 of 24) 79036 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 710-6 chr16 67175424 67176025 + 2 NA TTS (NM_001276311) TTS (NM_001276311) 1871 NM_001276311 8996 Hs.513667 NM_003946 ENSG00000140939 NOL3 ARC|FCM|MYOCL1|MYP|NOP|NOP30 nucleolar protein 3 protein-coding 264-13 chr18 13548576 13548721 + 2 NA intron (NM_181482, intron 4 of 5) MER52A|LTR|ERV1 -62466 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 616.5-6 chr14 47057287 47057621 + 2 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 285792 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 543-14 chr7 146401813 146402152 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -372289 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 753-4 chr14 49635761 49636273 + 2 NA promoter-TSS (NM_018139) promoter-TSS (NM_018139) -787 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 471-3 chr1 84860063 84860395 + 2 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 32977 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 474.5-7 chr17 62899820 62900319 + 2 NA Intergenic L2a|LINE|L2 -44146 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 521-18 chr7 24612473 24612922 + 2 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 39245 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 352-19 chr2 80054755 80055017 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -188303 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 566-10 chr2 152701993 152702515 + 2 NA intron (NM_001365601, intron 2 of 24) HERVIP10F-int|LTR|ERV1 15207 NM_001365600 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 241-21 chr7 34728975 34729132 + 2 NA intron (NR_015356, intron 2 of 4) LTR84b|LTR|ERVL 29219 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 192.5-5 chr11 33938071 33938260 + 2 NA Intergenic AluJb|SINE|Alu -46089 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 269-37 chr9 95751214 95751400 + 2 NA Intergenic Intergenic -124384 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 238-7 chr10 24649178 24649514 + 2 NA intron (NM_001367450, intron 5 of 27) intron (NM_001367450, intron 5 of 27) -26503 NR_160024 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 331.5-30 chr9 136737948 136738153 + 2 NA TTS (NM_001368089) TTS (NM_001368089) 4890 NM_001368089 414332 Hs.98132 NM_001001712 ENSG00000187922 LCN10 - lipocalin 10 protein-coding 225.5-18 chr19 19269176 19269296 + 2 NA intron (NM_001001524, intron 5 of 9) intron (NM_001001524, intron 5 of 9) 4065 NM_001001524 53345 Hs.531624 NM_203510 ENSG00000213996 TM6SF2 - transmembrane 6 superfamily member 2 protein-coding 756-5 chr11 38438879 38439387 + 2 NA Intergenic AluSq2|SINE|Alu 207223 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 223 chr1 6352410 6352573 + 2 NA intron (NM_007274, intron 1 of 8) intron (NM_007274, intron 1 of 8) 6438 NM_181866 11332 Hs.126137 NM_007274 ENSG00000097021 ACOT7 ACH1|ACT|BACH|CTE-II|LACH|LACH1|hBACH acyl-CoA thioesterase 7 protein-coding 440.5-24 chr8 92118628 92119058 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -15458 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 405-24 chr4 63311704 63312215 + 2 NA Intergenic L2a|LINE|L2 1097491 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 292.5-37 chrX 141927678 141927902 + 2 NA Intergenic L1MA2|LINE|L1 23896 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 248-13 chr2 119070322 119070468 + 2 NA Intergenic L1MC4|LINE|L1 88356 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 268.5-8 chr14 84848369 84848507 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -423494 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 523-16 chr2 67135018 67135508 + 2 NA intron (NR_038844, intron 6 of 7) intron (NR_038844, intron 6 of 7) 48817 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 480-16 chr2 116623597 116623985 + 2 NA Intergenic Intergenic -1190900 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 505.5 chr1 79848637 79849050 + 2 NA Intergenic MamTip1|DNA|hAT-Tip100 -686912 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 308.5-25 chr5 55029522 55029716 + 2 NA intron (NM_002104, intron 2 of 4) AluJr|SINE|Alu 5363 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 414-13 chr2 12795322 12795646 + 2 NA Intergenic Intergenic 58117 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 361-34 chrX 75383310 75383529 + 2 NA intron (NM_001146256, intron 9 of 10) intron (NM_001146256, intron 9 of 10) 109334 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 469.5-16 chr7 27278746 27279255 + 2 NA Intergenic AluSg|SINE|Alu -31771 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 544-20 chr8 132580145 132580685 + 2 NA intron (NR_073525, intron 11 of 12) L1MEg|LINE|L1 -18936 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 143.5-16 chr4 32107920 32108034 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -85555 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 321-27 chr7 29816201 29816483 + 2 NA intron (NM_001080529, intron 1 of 8) AluJr|SINE|Alu 9788 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 261.5-30 chr7 38896801 38896935 + 2 NA intron (NM_014396, intron 2 of 28) intron (NM_014396, intron 2 of 28) 12323 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 247-16 chr3 152369 152576 + 2 NA Intergenic L1M5|LINE|L1 -44124 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 650.5-13 chr8 137802723 137803111 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 280628 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 458-22 chr3 189147819 189148261 + 2 NA Intergenic Intergenic -23931 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 224.5-13 chr19 38880960 38881079 + 2 NA intron (NR_034146, intron 9 of 13).2 intron (NR_034146, intron 9 of 13).2 -2744 NM_001195833 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 198-14 chr3 14854305 14854426 + 2 NA intron (NM_152536, intron 1 of 19) intron (NM_152536, intron 1 of 19) 35403 NM_152536 152273 Hs.412406 NM_152536 ENSG00000154783 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 346-26 chr3 51022893 51023133 + 2 NA intron (NM_004947, intron 5 of 52) L1PBb|LINE|L1 347933 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 395-31 chr7 4553951 4554293 + 2 NA Intergenic MLT2B4|LTR|ERVL -128173 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 229.5-25 chr3 89294682 89294939 + 2 NA intron (NM_182644, intron 3 of 6) L1MEc|LINE|L1 187189 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 382-3 chr11 17799688 17800019 + 2 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 63905 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 219-20 chr2 192953561 192953750 + 2 NA Intergenic Intergenic 203810 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 167.5-28 chrX 100816503 100816675 + 2 NA Intergenic Intergenic -3770 NM_001325 1478 Hs.132370 NM_001325 ENSG00000101811 CSTF2 CstF-64 cleavage stimulation factor subunit 2 protein-coding 297-7 chr10 100682883 100683071 + 2 NA Intergenic Intergenic -52419 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 455.5-5 chr14 87331467 87332050 + 2 NA Intergenic Intergenic 323536 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 374-31 chr5 83418912 83419158 + 2 NA Intergenic Intergenic -52639 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 443-29 chr4 79489024 79489385 + 2 NA Intergenic L1PBa|LINE|L1 -3389 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 242.5-28 chr5 8349633 8349997 + 2 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 107749 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 269.5-12 chr13 74530558 74530742 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -22193 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 254-41 chr8 25667589 25667774 + 2 NA Intergenic Intergenic 208448 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 318-5 chr10 103671901 103672074 + 2 NA intron (NM_014631, intron 6 of 13) MIR3|SINE|MIR 6228 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 264 chr1 31115972 31116104 + 2 NA Intergenic L2a|LINE|L2 -50321 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 409-26 chr5 65450839 65451147 + 2 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 30927 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 353-25 chr3 34897640 34897952 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 496227 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 179-16 chr5 53744676 53744781 + 2 NA Intergenic Intergenic 74954 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 380.5-31 chrX 82177551 82177981 + 2 NA Intergenic L1PA16|LINE|L1 975664 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 272-21 chr3 39936982 39937192 + 2 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 127427 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 289-4 chr1 159058736 159058904 + 2 NA Intergenic MER61A|LTR|ERV1 17946 NM_004833 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 432.5-14 chr3 138534635 138534889 + 2 NA intron (NM_001320599, intron 7 of 17) intron (NM_001320599, intron 7 of 17) 57194 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 203.5-21 chr3 140331940 140332136 + 2 NA intron (NM_022131, intron 2 of 16) L2c|LINE|L2 176751 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 125.5-14 chr9 5730771 5730877 + 2 NA intron (NM_001206557, intron 6 of 24) L2a|LINE|L2 101705 NM_001206557 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 578-26 chr7 3289029 3289395 + 2 NA Intergenic AluSx3|SINE|Alu -12040 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 387-7 chr11 79301480 79301779 + 2 NA intron (NM_001098816, intron 1 of 33) MSTA|LTR|ERVL-MaLR 100480 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 319-32 chr5 33149200 33149431 + 2 NA Intergenic Intergenic -80420 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 239-18 chr21 29301059 29301204 + 2 NA intron (NM_206866, intron 1 of 4) intron (NM_206866, intron 1 of 4) 1756 NM_206866 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 600-2 chr1 109037805 109038153 + 2 NA intron (NM_014969, intron 1 of 14) AluJo|SINE|Alu 4249 NM_014969 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 313-41 chr9 94280146 94280372 + 2 NA intron (NM_194320, intron 2 of 4) intron (NM_194320, intron 2 of 4) -20948 NR_160773 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 468-25 chr4 27551555 27551818 + 2 NA Intergenic L2a|LINE|L2 334207 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 303-29 chr7 50992495 50992775 + 2 NA Intergenic MLT2D|LTR|ERVL -199182 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 397.5-2 chr1 32167206 32167448 + 2 NA intron (NM_012316, intron 12 of 13) intron (NM_012316, intron 12 of 13) -12348 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 646.5-3 chr15 94040415 94041114 + 2 NA intron (NR_120320, intron 2 of 8) L1PA15|LINE|L1 67174 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 372-10 chr10 76548849 76549152 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -339044 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 417-34 chr5 29901074 29901429 + 2 NA Intergenic Intergenic 20691 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 337-32 chr8 129372422 129372688 + 2 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 111587 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 495.5-12 chr22 26595502 26595803 + 2 NA Intergenic AluJo|SINE|Alu -5520 NM_003595 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 529-18 chr6 40950277 40950951 + 2 NA intron (NR_110873, intron 1 of 5) Charlie9|DNA|hAT-Charlie 72666 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 428-13 chr2 37778729 37779042 + 2 NA Intergenic Intergenic 50826 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 262-33 chr9 136048393 136048730 + 2 NA intron (NM_144653, intron 2 of 5) intron (NM_144653, intron 2 of 5) 46728 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 384-10 chr14 79182965 79183297 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -16851 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 292-31 chr7 4200536 4200727 + 2 NA intron (NM_001079653, intron 9 of 19) MLT1F2|LTR|ERVL-MaLR -65794 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 527-19 chr21 21771656 21772082 + 2 NA intron (NR_109958, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 24884 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 376.5-31 chr8 144114780 144115084 + 2 NA intron (NM_001316309, intron 21 of 23) intron (NM_001316309, intron 21 of 23) 7193 NM_001316309 340390 Hs.98723 NM_032529 ENSG00000179698 WDR97 KIAA1875 WD repeat domain 97 protein-coding 503-13 chr2 9507815 9508100 + 2 NA intron (NM_003183, intron 11 of 18) AluJb|SINE|Alu 32902 NM_001320858 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 281.5-6 chr12 29053880 29054272 + 2 NA Intergenic L1ME2|LINE|L1 -95202 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 649.5-8 chr8 55289885 55290390 + 2 NA intron (NM_052898, intron 1 of 2) AluSx1|SINE|Alu 165184 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 266-16 chr17 35106451 35106695 + 2 NA intron (NR_037714, intron 1 of 6) intron (NR_037714, intron 1 of 6) 13185 NM_133629 5892 Hs.631757 NM_002878 ENSG00000185379 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 530.5-10 chr20 52745153 52745526 + 2 NA Intergenic MIRb|SINE|MIR 124501 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 406.5-29 chr8 120807012 120807288 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 4896 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 180-8 chr4 44393547 44393674 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 55199 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 335-11 chr12 40129518 40129844 + 2 NA Intergenic MER4A|LTR|ERV1 -23600 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 385-35 chr6 153143022 153143280 + 2 NA Intergenic LTR78B|LTR|ERV1 -11869 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 431-8 chr12 29866827 29867050 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -82179 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 327-46 chr8 72544211 72544471 + 2 NA intron (NM_004770, intron 1 of 2) L2c|LINE|L2 7116 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 314-4 chr11 12000416 12000584 + 2 NA intron (NM_015881, intron 3 of 7) AluSx|SINE|Alu 8139 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 306.5-12 chr14 45285348 45285602 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -32273 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 316-25 chr21 23887126 23887336 + 2 NA Intergenic LTR1A2|LTR|ERV1 434146 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 573.5-3 chr18 39074476 39074866 + 2 NA Intergenic L2a|LINE|L2 547504 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 486-20 chr19 7748181 7748457 + 2 NA promoter-TSS (NM_001144894) promoter-TSS (NM_001144894) -785 NM_021155 30835 Hs.278694 NM_021155 ENSG00000090659 CD209 CDSIGN|CLEC4L|DC-SIGN|DC-SIGN1 CD209 molecule protein-coding 382-16 chr16 63060867 63061112 + 2 NA Intergenic Intergenic -1024551 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 355-5 chr11 111026203 111026647 + 2 NA Intergenic Intergenic 70893 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 307-36 chr9 34558362 34558594 + 2 NA intron (NM_001207011, intron 4 of 9) intron (NM_001207011, intron 4 of 9) -9534 NR_024369 415056 Hs.734229 NR_024369 CNTFR-AS1 - CNTFR antisense RNA 1 ncRNA 307-23 chr22 20984711 20984956 + 2 NA intron (NM_006767, intron 2 of 20) intron (NM_006767, intron 2 of 20) 2536 NM_006767 8216 Hs.78788 NM_006767 ENSG00000099949 LZTR1 BTBD29|LZTR-1|NS10|NS2|SWNTS2 leucine zipper like transcription regulator 1 protein-coding 268.5-12 chr2 24263870 24264034 + 2 NA intron (NM_001348182, intron 19 of 38) L1ME1|LINE|L1 88899 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 273-10 chr14 35313844 35314068 + 2 NA intron (NM_001282232, intron 5 of 6) AluSx1|SINE|Alu 21574 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 576.5 chr1 234988726 234989122 + 2 NA Intergenic L1MB3|LINE|L1 -24925 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 156-17 chr5 120968966 120969058 + 2 NA Intergenic Intergenic -353538 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 226-12 chr19 28928274 28928446 + 2 NA Intergenic L1M5|LINE|L1 -36771 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 299.5-12 chr15 61519939 61520120 + 2 NA Intergenic Intergenic -209889 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 359-31 chr3 98999275 98999629 + 2 NA Intergenic L1PA8A|LINE|L1 -97757 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 255-13 chr2 223669361 223669510 + 2 NA Intergenic Intergenic -67074 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 152.5-10 chr11 92167492 92167634 + 2 NA Intergenic Intergenic -57471 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 268.5-30 chr6 150755900 150756091 + 2 NA intron (NM_001329803, intron 2 of 13) intron (NM_001329803, intron 2 of 13) 34896 NM_001329806 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 386-32 chr8 135041552 135041827 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 191754 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 304.5-28 chr21 24153083 24153275 + 2 NA Intergenic Intergenic 168198 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 581.5-11 chr21 23505415 23505849 + 2 NA Intergenic Intergenic -120797 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 443-4 chr1 155784847 155785130 + 2 NA intron (NM_032292, intron 13 of 20) AluJb|SINE|Alu -1156 NR_132767 106633816 NR_132767 SCARNA26B - small Cajal body-specific RNA 26B ncRNA 411-24 chr20 58572773 58573175 + 2 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -57575 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 275-11 chr12 31981514 31981799 + 2 NA exon (NM_018169, exon 4 of 6) exon (NM_018169, exon 4 of 6) 22241 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 177-10 chr2 106361170 106361365 + 2 NA Intergenic L1MC5a|LINE|L1 -8478 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 387-12 chr15 88677669 88677990 + 2 NA Intergenic Intergenic 38813 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 311-33 chr9 17437325 17437637 + 2 NA intron (NM_001365029, intron 18 of 25) intron (NM_001365029, intron 18 of 25) -141585 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 399-6 chr10 74930923 74931295 + 2 NA intron (NR_134476, intron 1 of 1) Tigger13a|DNA|TcMar-Tigger 18323 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 454-16 chr2 225165515 225165766 + 2 NA Intergenic Intergenic -123172 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 335-39 chr3 52492561 52492805 + 2 NA 3' UTR (NM_007184, exon 21 of 21) 3' UTR (NM_007184, exon 21 of 21) -2655 NM_015136 23166 Hs.301989 NM_015136 ENSG00000010327 STAB1 CLEVER-1|FEEL-1|FELE-1|FEX1|SCARH2|STAB-1 stabilin 1 protein-coding 299-2 chr1 176149790 176150044 + 2 NA intron (NM_001286644, intron 3 of 17) intron (NM_001286644, intron 3 of 17) 57327 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 260-22 chr3 96539178 96539365 + 2 NA Intergenic Intergenic 179307 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 594-11 chr4 116710597 116711127 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR 374714 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 417.5-13 chr3 110304655 110305167 + 2 NA Intergenic Intergenic 702083 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 538-2 chr11 69375301 69375667 + 2 NA Intergenic Intergenic -50171 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 250-30 chr4 43031094 43031346 + 2 NA TTS (NM_001080476) TTS (NM_001080476) 137954 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 578-6 chr11 125946361 125946808 + 2 NA intron (NM_001365077, intron 1 of 11) AluSx|SINE|Alu 528 NM_001365077 338667 Hs.730137 NM_001365077 VSIG10L2 - V-set and immunoglobulin domain containing 10 like 2 protein-coding 313-14 chr15 87209581 87209816 + 2 NA Intergenic AluSx1|SINE|Alu -221272 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 250-22 chr2 173782879 173783141 + 2 NA Intergenic Intergenic 180870 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 338-29 chr4 180559318 180559597 + 2 NA Intergenic Intergenic 599692 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 328-23 chr2 200859557 200859744 + 2 NA intron (NR_027856, intron 3 of 10) intron (NR_027856, intron 3 of 10) 4911 NM_001162407 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 463-16 chr20 44605823 44606090 + 2 NA intron (NM_001281444, intron 4 of 5) L1ME4b|LINE|L1 23377 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 285-5 chr10 79371550 79371776 + 2 NA Intergenic L1M4|LINE|L1 24194 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 348-11 chr13 80067401 80067618 + 2 NA Intergenic MIRb|SINE|MIR 56432 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 352-27 chr3 44424495 44424825 + 2 NA promoter-TSS (NM_001351480) promoter-TSS (NM_001351480) -627 NM_001351480 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 465-19 chr12 109011661 109011922 + 2 NA intron (NM_018711, intron 1 of 15) L1MA8|LINE|L1 9277 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 500-13 chr5 111466629 111467010 + 2 NA intron (NM_001744, intron 7 of 10) L1PB1|LINE|L1 -45407 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 437-27 chr2 79037068 79037459 + 2 NA Intergenic Intergenic 11561 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 329.5-5 chr11 80901504 80901886 + 2 NA Intergenic Intergenic -138892 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 247-20 chr5 108588062 108588201 + 2 NA Intergenic Intergenic 140130 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 389-12 chr15 39888036 39888234 + 2 NA intron (NM_001271854, intron 1 of 3) MER34A1|LTR|ERV1 32757 NM_007223 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 493.5-16 chr5 133432549 133432858 + 2 NA intron (NM_015082, intron 3 of 15) L2a|LINE|L2 -4997 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 277-8 chr11 73738544 73738761 + 2 NA intron (NM_198896, intron 1 of 7) AluJr4|SINE|Alu 21441 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 321-31 chr8 144424079 144424302 + 2 NA intron (NM_016208, intron 8 of 9) CpG 4358 NM_016208 51160 Hs.418175 NM_016208 ENSG00000160948 VPS28 - VPS28 subunit of ESCRT-I protein-coding 339.5-7 chr11 103293115 103293415 + 2 NA intron (NM_001377, intron 75 of 88) L1M1|LINE|L1 183839 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 379.5-9 chr14 24953329 24953796 + 2 NA intron (NM_001351943, intron 3 of 6) L2b|LINE|L2 95438 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 323-20 chr2 141902429 141902725 + 2 NA intron (NM_018557, intron 1 of 90) MER97d|DNA|hAT-Tip100 229124 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 257.5-10 chr10 105213433 105213642 + 2 NA intron (NM_014978, intron 17 of 26) intron (NM_014978, intron 17 of 26) -547321 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 295.5-3 chr10 22578732 22578939 + 2 NA intron (NM_005028, intron 4 of 9) intron (NM_005028, intron 4 of 9) 135273 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 457 chr1 179235954 179236287 + 2 NA Intergenic L2a|LINE|L2 -6436 NM_001136001 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 567-2 chr14 46068479 46069069 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 4615 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 277.5-21 chr3 1552251 1552528 + 2 NA Intergenic Intergenic 459365 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 491.5-8 chr14 86530447 86530764 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -375173 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 354.5-32 chr6 43796134 43796421 + 2 NA Intergenic Intergenic 24309 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 168.5-6 chr10 122242598 122242697 + 2 NA intron (NM_206862, intron 19 of 22) (T)n|Simple_repeat|Simple_repeat -28649 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 369-3 chr1 220130099 220130475 + 2 NA intron (NM_018060, intron 14 of 22) L1MA4A|LINE|L1 -12046 NR_029711 406969 NR_029711 ENSG00000207624 MIR194-1 MIRN194-1|mir-194-1 microRNA 194-1 ncRNA 375-11 chr14 69108303 69108529 + 2 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 44183 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 499.5-23 chr7 65231008 65231304 + 2 NA intron (NR_146906, intron 16 of 17) LTR24B|LTR|ERV1 90126 NR_146906 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 423.5-14 chr18 2771698 2772241 + 2 NA intron (NM_015295, intron 40 of 47) intron (NM_015295, intron 40 of 47) -75037 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 239-2 chr10 43553878 43554094 + 2 NA Intergenic L1M4|LINE|L1 14473 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 445-34 chr8 86335233 86335797 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -7032 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 477.5-21 chr6 47114484 47114880 + 2 NA Intergenic AluJb|SINE|Alu -72350 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 259-5 chr12 3476432 3476653 + 2 NA intron (NM_001256536, intron 1 of 9) intron (NM_001256536, intron 1 of 9) -14661 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 295-20 chr19 19209976 19210126 + 2 NA Intergenic AluSx|SINE|Alu -1907 NM_004386 1463 Hs.169047 NM_004386 ENSG00000130287 NCAN CSPG3 neurocan protein-coding 209-21 chr3 29193711 29193856 + 2 NA Intergenic Intergenic 87156 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 215.5-19 chr2 9849349 9849458 + 2 NA exon (NM_005680, exon 3 of 15) exon (NM_005680, exon 3 of 15) 5929 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 255-30 chr7 52595620 52595747 + 2 NA Intergenic LOR1-int|LTR|ERV1 -439950 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 383-25 chr3 185986348 185986663 + 2 NA Intergenic Intergenic 26562 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 337-29 chr7 23230422 23230706 + 2 NA Intergenic Intergenic -16211 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 314-32 chr5 38156849 38157151 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 8520 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 526-17 chr5 18278476 18279025 + 2 NA Intergenic Intergenic 471476 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 326.5-29 chr6 65500494 65500878 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 79118 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 413-25 chr22 25332823 25333104 + 2 NA Intergenic Intergenic 14706 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 309.5-18 chr4 47153525 47153767 + 2 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 122079 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 619-5 chr14 21973425 21973921 + 2 NA Intergenic Intergenic -302656 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 542.5-17 chr3 43075219 43075917 + 2 NA Intergenic Intergenic 30511 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 393-12 chr15 70924475 70924729 + 2 NA intron (NM_017691, intron 7 of 15) L1MEd|LINE|L1 32159 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 525-6 chr14 60985083 60985532 + 2 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -3617 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 617.5-11 chr3 56925101 56925595 + 2 NA intron (NM_001128615, intron 3 of 12) MLT1N2|LTR|ERVL-MaLR -8912 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 409.5-20 chr4 118586695 118587132 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -4831 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 438-9 chr14 54749157 54749490 + 2 NA intron (NM_015589, intron 4 of 11) intron (NM_015589, intron 4 of 11) -5510 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 308-9 chr14 41206267 41206520 + 2 NA Intergenic Intergenic 251682 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 443-16 chr2 63799339 63799775 + 2 NA Intergenic Intergenic -41407 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 374-40 chr8 123770072 123770486 + 2 NA intron (NM_144963, intron 1 of 23) intron (NM_144963, intron 1 of 23) 1840 NM_001317918 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 459-21 chr4 108855963 108856371 + 2 NA intron (NM_198721, intron 23 of 36) intron (NM_198721, intron 23 of 36) -93114 NM_001146627 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 230-17 chr2 31404696 31404886 + 2 NA intron (NM_000379, intron 2 of 35) intron (NM_000379, intron 2 of 35) 9951 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 284.5-5 chr1 229072133 229072388 + 2 NA Intergenic Intergenic 102541 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 839-4 chr10 115606479 115607356 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 513552 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 328-22 chr2 118906301 118906614 + 2 NA Intergenic Intergenic -35712 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 362-16 chr2 22184887 22185236 + 2 NA Intergenic Intergenic -351418 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 175.5 chr1 245918322 245918513 + 2 NA intron (NM_022743, intron 7 of 11) intron (NM_022743, intron 7 of 11) 498995 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 378.5-24 chr3 155171269 155171602 + 2 NA intron (NM_000902, intron 20 of 22) L3b|LINE|CR1 -69510 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 427-30 chr7 46511976 46512320 + 2 NA Intergenic MIR|SINE|MIR 184974 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 339-34 chr7 82171135 82171465 + 2 NA intron (NM_000722, intron 3 of 38) L1MEi|LINE|L1 162123 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 195-12 chr2 100200611 100200742 + 2 NA Intergenic Intergenic -7578 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 458-10 chr13 50656087 50656396 + 2 NA Intergenic Intergenic -128792 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 365-9 chr13 24820588 24820845 + 2 NA intron (NM_031277, intron 15 of 35) AluSx1|SINE|Alu 56547 NM_001184993 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 579-8 chr19 32527663 32528137 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -53290 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 339-5 chr12 2037585 2037877 + 2 NA Intergenic Intergenic -10621 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 229 chr1 192026703 192026840 + 2 NA Intergenic AluSz6|SINE|Alu -131691 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 545-2 chr1 112682451 112682735 + 2 NA intron (NM_001321324, intron 2 of 20) L1ME2z|LINE|L1 7855 NM_001369507 4343 Hs.514941 NM_020963 ENSG00000155363 MOV10 fSAP113|gb110 Mov10 RISC complex RNA helicase protein-coding 193.5-4 chr1 199162120 199162283 + 2 NA intron (NR_147896, intron 2 of 3) MamGypLTR1c|LTR|Gypsy 13603 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 245-19 chr18 9819115 9819336 + 2 NA intron (NM_006868, intron 5 of 6) L1MB2|LINE|L1 -66748 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 205.5-3 chr11 34273094 34273255 + 2 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 84836 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 379-43 chr9 86519241 86519545 + 2 NA Intergenic MER57-int|LTR|ERV1 -164983 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 398-36 chr8 98847497 98847773 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -21947 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 444-25 chr6 76081257 76081611 + 2 NA Intergenic L1ME3Cz|LINE|L1 -8756 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 257-18 chr17 63163035 63163270 + 2 NA intron (NM_025185, intron 4 of 25) L2|LINE|L2 196917 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 268-12 chr2 210610082 210610258 + 2 NA intron (NR_163592, intron 9 of 27) intron (NR_163592, intron 9 of 27) -7401 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 640.5-4 chr15 68147691 68148195 + 2 NA intron (NM_016166, intron 6 of 13) intron (NM_016166, intron 6 of 13) 58167 NM_001286695 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 305-45 chr7 64659406 64659679 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -6541 NM_001282360 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 414-32 chr5 37787436 37787706 + 2 NA Intergenic Intergenic 47251 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 375-20 chr3 133967484 133967729 + 2 NA intron (NM_005630, intron 3 of 13) intron (NM_005630, intron 3 of 13) -37794 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 128-5 chr2 15306286 15306390 + 2 NA intron (NR_052013, intron 40 of 50) intron (NR_052013, intron 40 of 50) 254996 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 402-34 chr7 53689538 53689850 + 2 NA intron (NR_038371, intron 5 of 5) intron (NR_038371, intron 5 of 5) 122237 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 254-5 chr11 9024132 9024305 + 2 NA intron (NM_001367977, intron 21 of 22) intron (NM_001367977, intron 21 of 22) -20217 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 268.5-13 chr2 64871482 64871679 + 2 NA Intergenic Intergenic -7949 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 304.5-13 chr12 103894738 103895121 + 2 NA intron (NR_027249, intron 5 of 15) intron (NR_027249, intron 5 of 15) 35282 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 266-36 chr5 72311403 72311619 + 2 NA intron (NM_015084, intron 2 of 10) MSTC|LTR|ERVL-MaLR 8729 NM_001286751 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 334-5 chr10 6035028 6035287 + 2 NA intron (NM_000417, intron 1 of 7) intron (NM_000417, intron 1 of 7) 27210 NM_001308242 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 461-21 chr4 66888299 66888587 + 2 NA Intergenic Intergenic 533557 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 272-22 chr3 50800747 50800892 + 2 NA intron (NM_004947, intron 2 of 52) L1M2c|LINE|L1 125739 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 247.5-20 chr4 86435562 86435784 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 17522 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 170-4 chr10 21115845 21115972 + 2 NA intron (NM_001173484, intron 2 of 6) L1ME1|LINE|L1 -58082 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 336-23 chr16 66105769 66106018 + 2 NA Intergenic Intergenic -260798 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 342.5-20 chr2 222661679 222662193 + 2 NA Intergenic L1M5|LINE|L1 -5844 NR_130154 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 150-2 chr12 17488251 17488356 + 2 NA Intergenic Intergenic 100775 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 380-20 chr5 169869290 169869728 + 2 NA intron (NM_001129891, intron 3 of 3) intron (NM_001129891, intron 3 of 3) 110986 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 248-8 chr18 80104422 80104627 + 2 NA Intergenic L2b|LINE|L2 -4738 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 391-23 chr5 104646142 104646569 + 2 NA Intergenic Intergenic -453119 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 359-10 chr11 12822639 12822889 + 2 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 148343 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 240.5-22 chr6 9923837 9924033 + 2 NA Intergenic L1PA14|LINE|L1 -480567 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 429-26 chr4 75268374 75268755 + 2 NA Intergenic MIR|SINE|MIR -85512 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 585-15 chr6 44962509 44963012 + 2 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 235010 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 296-33 chr8 65276964 65277168 + 2 NA Intergenic MER97b|DNA|hAT-Tip100 -96726 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 375-5 chr1 237116387 237116575 + 2 NA intron (NM_001035, intron 1 of 104) MLT2B1|LTR|ERVL 74297 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 295-19 chr19 8695474 8695734 + 2 NA Intergenic Intergenic 3191 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 309.5-19 chr4 187741854 187742159 + 2 NA Intergenic L1M3|LINE|L1 -69365 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 293.5-9 chr13 95188033 95188231 + 2 NA intron (NM_001105515, intron 10 of 20) intron (NM_001105515, intron 10 of 20) -22212 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 328-19 chr2 30777373 30777736 + 2 NA intron (NM_144575, intron 3 of 22) intron (NM_144575, intron 3 of 22) 29892 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 226-13 chr2 3172103 3172306 + 2 NA Intergenic Intergenic -46178 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 336.5-28 chr8 136617336 136617694 + 2 NA intron (NR_147196, intron 2 of 5) MER113|DNA|hAT-Charlie 86717 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 345.5-7 chr11 75922355 75922659 + 2 NA intron (NM_003369, intron 6 of 14) L1M5|LINE|L1 107297 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 329-32 chr6 141830635 141830832 + 2 NA Intergenic LOR1a|LTR|ERV1 258066 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 257.5-8 chr10 60814549 60814741 + 2 NA Intergenic L1ME4b|LINE|L1 36167 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 257-28 chr20 46849814 46849964 + 2 NA Intergenic L2c|LINE|L2 -44735 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 425-27 chr2 27115075 27115422 + 2 NA intron (NM_006569, intron 1 of 5) MER45A|DNA|hAT-Tip100 3879 NM_001301324 10669 Hs.159525 NM_006569 ENSG00000138028 CGREF1 CGR11 cell growth regulator with EF-hand domain 1 protein-coding 360-4 chr1 161342679 161343003 + 2 NA intron (NM_001278172, intron 3 of 3) intron (NM_001278172, intron 3 of 3) 25042 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 375-36 chr8 86733141 86733384 + 2 NA intron (NM_019098, intron 2 of 17) L1PA16|LINE|L1 10413 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 304.5-33 chr4 179154562 179154972 + 2 NA Intergenic Intergenic -1246831 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 230.5-3 chr1 161173086 161173257 + 2 NA intron (NM_001199873, intron 6 of 7) intron (NM_001199873, intron 6 of 7) 4336 NM_003779 8703 Hs.321231 NM_003779 ENSG00000158850 B4GALT3 beta4Gal-T3 beta-1,4-galactosyltransferase 3 protein-coding 388-29 chr5 83982971 83983190 + 2 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -262225 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 278.5 chr1 171503533 171503739 + 2 NA intron (NM_015172, intron 1 of 33) L1M4|LINE|L1 18106 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 314-19 chr2 230759709 230759898 + 2 NA intron (NM_001130849, intron 1 of 8) intron (NM_001130849, intron 1 of 8) 46255 NM_001130850 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 699.5-5 chr15 67724560 67725159 + 2 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -100650 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 244-30 chr9 99337345 99337577 + 2 NA Intergenic Intergenic 37796 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 455-14 chr18 8199650 8199982 + 2 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 167218 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 323.5-5 chr10 19220886 19221299 + 2 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 172291 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 620-16 chrX 118614593 118615031 + 2 NA intron (NM_144658, intron 29 of 52) intron (NM_144658, intron 29 of 52) -112794 NM_001560 3597 Hs.496646 NM_001560 ENSG00000131724 IL13RA1 CD213A1|CT19|IL-13Ra|NR4 interleukin 13 receptor subunit alpha 1 protein-coding 349-40 chr8 131850183 131850442 + 2 NA Intergenic Intergenic -53781 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 235 chr1 69246608 69246756 + 2 NA Intergenic Intergenic -186573 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 397.5-35 chr8 144072693 144072963 + 2 NA Intergenic L1MA4A|LINE|L1 -5844 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 380-21 chr6 39944757 39945023 + 2 NA Intergenic LTR33|LTR|ERVL -10428 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 579-18 chr3 121790737 121791053 + 2 NA intron (NM_001023571, intron 7 of 11) intron (NM_001023571, intron 7 of 11) -41128 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 446.5-5 chr16 27102797 27103077 + 2 NA Intergenic Intergenic 36010 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 522-17 chr18 4948196 4948697 + 2 NA Intergenic L1PREC2|LINE|L1 -132736 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 788-2 chr1 63584841 63585561 + 2 NA Intergenic L1MD2|LINE|L1 -8210 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 400.5-19 chr5 31068926 31069297 + 2 NA Intergenic L2c|LINE|L2 -124575 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 410.5-5 chr16 46507492 46507901 + 2 NA intron (NR_026556, intron 9 of 16) L1MA2|LINE|L1 61401 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 368.5-31 chr9 70768407 70768798 + 2 NA intron (NM_001366143, intron 7 of 25) intron (NM_001366143, intron 7 of 25) 41482 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 237.5-17 chr4 113223640 113223937 + 2 NA intron (NM_001354275, intron 5 of 43) MLT1F1|LTR|ERVL-MaLR -69051 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 285.5-25 chr5 150236959 150237205 + 2 NA intron (NM_001369025, intron 14 of 17) intron (NM_001369025, intron 14 of 17) 47020 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 557-11 chr19 27935014 27935454 + 2 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -141294 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 349.5-9 chr13 22660181 22660397 + 2 NA Intergenic Intergenic 237892 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 197-11 chr11 111600484 111600669 + 2 NA Intergenic L1MC4|LINE|L1 -1873 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 400-21 chr3 108408963 108409314 + 2 NA intron (NM_014981, intron 32 of 41) intron (NM_014981, intron 32 of 41) 97353 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 385.5-11 chr14 45493504 45493862 + 2 NA Intergenic L2a|LINE|L2 221919 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 282-5 chr1 90990232 90990438 + 2 NA intron (NM_201269, intron 1 of 5) intron (NM_201269, intron 1 of 5) 31173 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 250-10 chr12 120649775 120649967 + 2 NA promoter-TSS (NM_004276) promoter-TSS (NM_004276) -406 NM_031205 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 444-7 chr14 51736938 51737243 + 2 NA Intergenic Intergenic 19807 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 646.5-12 chr4 104430329 104430728 + 2 NA Intergenic Intergenic -60437 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 164.5-33 chr9 38125015 38125160 + 2 NA Intergenic MIR|SINE|MIR -55860 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 322.5-22 chr4 61419106 61419299 + 2 NA intron (NM_001371343, intron 2 of 23) MER6A|DNA|TcMar-Tigger 217030 NM_001371342 271-17 chr21 28697828 28698036 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 158614 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 395-29 chr5 171488858 171489236 + 2 NA Intergenic Intergenic 69400 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 294.5-11 chr14 22427934 22428207 + 2 NA intron (NR_148363, intron 1 of 2) intron (NR_148363, intron 1 of 2) 4683 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 579.5-2 chr1 185047289 185047884 + 2 NA intron (NM_007212, intron 1 of 6) intron (NM_007212, intron 1 of 6) 2028 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 272-25 chr3 145382689 145382890 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack 686396 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 365-6 chr11 106546777 106547075 + 2 NA Intergenic L1ME1|LINE|L1 295519 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 247-8 chr15 52108255 52108426 + 2 NA TTS (NM_001306168) TTS (NM_001306168) 4435 NM_020396 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 259.5-13 chr17 29035962 29036190 + 2 NA Intergenic Intergenic -7065 NM_016518 51268 Hs.462585 NM_016518 ENSG00000179761 PIPOX LPIPOX pipecolic acid and sarcosine oxidase protein-coding 477-15 chr3 110823066 110823429 + 2 NA Intergenic L1ME1|LINE|L1 246712 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 407-4 chr10 67586717 67587063 + 2 NA intron (NM_001127384, intron 3 of 17) L1PA3|LINE|L1 78770 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 380.5-20 chr3 120030925 120031457 + 2 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 53457 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 324-19 chr2 10598104 10598311 + 2 NA intron (NR_048552, intron 16 of 19) Tigger6a|DNA|TcMar-Tigger 91768 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 490.5-16 chr5 120443186 120443457 + 2 NA Intergenic Intergenic -20957 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 379-42 chr8 124341201 124341493 + 2 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 31352 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 226.5-28 chrX 40382532 40382660 + 2 NA Intergenic Intergenic 119679 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 327-35 chr4 146013766 146013970 + 2 NA Intergenic AluJb|SINE|Alu -75045 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 385-13 chr17 55108857 55109141 + 2 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -140214 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 255.5-15 chr2 121662687 121662898 + 2 NA intron (NR_037857, intron 2 of 3) L2c|LINE|L2 12803 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 189-3 chr11 92120753 92120968 + 2 NA Intergenic L1MDa|LINE|L1 -104174 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 462.5-4 chr10 67046487 67046890 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 34422 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 314-2 chr10 32674234 32674479 + 2 NA intron (NM_001321115, intron 22 of 43) L1M4c|LINE|L1 227116 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 291-24 chr7 16991720 16991881 + 2 NA Intergenic LTR40b|LTR|ERVL -109817 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 293.5-17 chr2 24070153 24070305 + 2 NA intron (NM_016047, intron 2 of 3) intron (NM_016047, intron 2 of 3) 6097 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 335 chr1 172115889 172116135 + 2 NA intron (NR_146559, intron 14 of 20) intron (NR_146559, intron 14 of 20) -22796 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 510-23 chr8 131897608 131898048 + 2 NA Intergenic MER57F|LTR|ERV1 -6265 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 310-4 chr1 111676013 111676244 + 2 NA intron (NM_001370217, intron 1 of 7) AluSx1|SINE|Alu 11334 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 326-38 chr8 79402680 79402989 + 2 NA Intergenic Intergenic 70646 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 353.5-15 chr2 185712650 185712876 + 2 NA Intergenic Intergenic 25956 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 345.5-9 chr12 14202844 14203016 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -162702 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 253-25 chr3 192178349 192178499 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -60206 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 192-9 chr15 27692594 27692742 + 2 NA Intergenic Intergenic 406647 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 300.5-15 chr14 46965645 46965954 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -314018 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 503.5-6 chr12 90063899 90064209 + 2 NA Intergenic Intergenic 116361 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 367.5-33 chr7 29521874 29522094 + 2 NA Intergenic L1M2|LINE|L1 38168 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 287-37 chr6 26610375 26610522 + 2 NA Intergenic Intergenic 13495 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 357-15 chr16 8497523 8497776 + 2 NA Intergenic L1MB7|LINE|L1 92189 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 335.5-31 chr7 89884907 89885146 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -234374 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 276.5-12 chr14 73336724 73337006 + 2 NA intron (NM_001005743, intron 4 of 12) L1MEg1|LINE|L1 -90864 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 392-15 chr15 45334430 45334638 + 2 NA Intergenic Intergenic 44010 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 244-14 chr2 16166023 16166360 + 2 NA Intergenic MIRb|SINE|MIR 115764 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 368-41 chr7 33242594 33242852 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 113159 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 548-21 chr9 113881958 113882287 + 2 NA intron (NM_001318042, intron 1 of 14) intron (NM_001318042, intron 1 of 14) 5813 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 258.5-12 chr2 174294571 174294763 + 2 NA Intergenic L1MA10|LINE|L1 -31360 NR_038897 285084 Hs.275398 NR_038897 ENSG00000231453 LINC01305 - long intergenic non-protein coding RNA 1305 ncRNA 420-24 chr22 28229173 28229578 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -230494 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 406.5-30 chr8 139382680 139383157 + 2 NA Intergenic L1ME2|LINE|L1 320205 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 324-3 chr1 45938610 45938900 + 2 NA intron (NM_001324321, intron 3 of 28) L1ME1|LINE|L1 74407 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 224-18 chr21 30630536 30630734 + 2 NA Intergenic Intergenic -4571 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 486-38 chr7 3694124 3694409 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 393014 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 294 chr1 57816275 57816540 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -44174 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 869.5-3 chr2 118419641 118420322 + 2 NA Intergenic L1MCc|LINE|L1 182985 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 387-23 chr3 76570287 76570578 + 2 NA Intergenic Intergenic -469667 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 396.5-9 chr11 27962876 27963162 + 2 NA Intergenic Intergenic -93796 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 716-3 chr12 91044209 91044578 + 2 NA Intergenic Intergenic 13961 NM_007035 11081 Hs.125750 NM_007035 ENSG00000139330 KERA CNA2|KTN|SLRR2B keratocan protein-coding 276-24 chr2 37016739 37016938 + 2 NA intron (NM_019024, intron 26 of 35) intron (NM_019024, intron 26 of 35) -50302 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 241-5 chr11 47319273 47319531 + 2 NA intron (NM_130476, intron 27 of 32) AluSz|SINE|Alu 33300 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 368-11 chr16 79003176 79003584 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 597357 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 285.5-24 chr5 120009982 120010209 + 2 NA Intergenic MIR3|SINE|MIR 380536 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 455-32 chr7 37953751 37954078 + 2 NA Intergenic Intergenic 32595 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 343.5-33 chr8 133994598 133994867 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 108236 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 397-16 chr18 2004787 2005046 + 2 NA Intergenic L1ME3|LINE|L1 566589 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 334-29 chr8 111716287 111716596 + 2 NA Intergenic Intergenic 339802 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 484-28 chr5 11535730 11536008 + 2 NA intron (NM_001288715, intron 2 of 20) MIRc|SINE|MIR 53048 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 356-31 chr5 23983280 23983579 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 32081 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 281.5-10 chr16 35372148 35372547 + 2 NA intron (NR_027079, intron 1 of 8) L1M3|LINE|L1 8816 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 676-3 chr8 140951909 140952648 + 2 NA intron (NM_001352719, intron 1 of 32) intron (NM_001352719, intron 1 of 32) 48726 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 365.5-15 chr4 144593361 144593808 + 2 NA Intergenic Intergenic 52435 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 637-6 chr3 144898731 144899207 + 2 NA Intergenic Intergenic 925888 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 278-8 chr11 107746530 107746776 + 2 NA Intergenic Intergenic -34597 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 344-2 chr1 51716432 51716643 + 2 NA intron (NM_148906, intron 3 of 22) MIR|SINE|MIR -13313 NM_148907 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 238-8 chr11 36245790 36245976 + 2 NA Intergenic Intergenic 43541 NM_014186 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 501.5-27 chr8 134134367 134134808 + 2 NA Intergenic Intergenic 248091 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 327.5-7 chr17 12264250 12264619 + 2 NA Intergenic AluSp|SINE|Alu 182535 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 887-2 chr17 68960294 68960946 + 2 NA Intergenic Intergenic -5228 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 436-7 chr13 56065412 56065765 + 2 NA Intergenic Intergenic 891134 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 255 chr1 30465853 30466046 + 2 NA Intergenic HAL1b|LINE|L1 -252823 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 646-2 chr17 43096482 43097190 + 2 NA intron (NR_027676, intron 8 of 22) intron (NR_027676, intron 8 of 22) 27279 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 350-21 chr3 44981890 44982099 + 2 NA intron (NR_023353, intron 1 of 6) intron (NR_023353, intron 1 of 6) 5745 NR_023353 23016 Hs.719958 NM_015004 ENSG00000075914 EXOSC7 EAP1|RRP42|Rrp42p|hRrp42p|p8 exosome component 7 protein-coding 374-2 chr1 186777714 186778175 + 2 NA Intergenic Intergenic -50956 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 286.5-6 chr1 238364119 238364271 + 2 NA Intergenic L1MC3|LINE|L1 121822 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 340-7 chr10 99004109 99004448 + 2 NA intron (NM_021828, intron 3 of 11) L1MA8|LINE|L1 -79710 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 359.5-34 chr6 145253897 145254098 + 2 NA Intergenic Intergenic 432880 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 610-14 chr5 115116844 115117395 + 2 NA Intergenic Intergenic 52789 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 538-11 chr3 136539070 136539407 + 2 NA intron (NM_005862, intron 6 of 33) Helitron1Nb_Mam|RC|Helitron 213140 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 303.5-8 chr18 66511297 66511625 + 2 NA intron (NM_021153, intron 10 of 11) intron (NM_021153, intron 10 of 11) 92629 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 380.5-15 chr2 155632776 155633120 + 2 NA Intergenic Intergenic 621983 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 360-37 chr4 57177944 57178373 + 2 NA intron (NR_034081, intron 1 of 4) L2b|LINE|L2 -67773 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 238.5-21 chr2 174925894 174926016 + 2 NA intron (NM_001025201, intron 4 of 12) MER4D|LTR|ERV1 -78337 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 303-33 chr8 87418094 87418282 + 2 NA Intergenic L1MB7|LINE|L1 455827 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 604-4 chr1 245201977 245202471 + 2 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 32293 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 223-16 chr18 9518205 9518424 + 2 NA intron (NM_006788, intron 3 of 9) intron (NM_006788, intron 3 of 9) 42801 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 372.5-24 chr8 127196325 127196636 + 2 NA intron (NR_120364, intron 1 of 2) intron (NR_120364, intron 1 of 2) 1147 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 217.5-21 chr20 33657722 33657949 + 2 NA exon (NM_031231, exon 13 of 13) exon (NM_031231, exon 13 of 13) -4492 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 473-13 chr22 25346283 25346590 + 2 NA Intergenic LTR12C|LTR|ERV1 16121 NM_182492 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 293.5-37 chrX 47021640 47021817 + 2 NA intron (NM_001077445, intron 4 of 10) L1ME3A|LINE|L1 -56627 NM_001282848 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 472-26 chr9 85726496 85726842 + 2 NA intron (NM_015239, intron 1 of 25) Charlie6|DNA|hAT-Charlie 15360 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 579-25 chr7 53111563 53112121 + 2 NA Intergenic Intergenic 76209 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 223-12 chr14 70760077 70760272 + 2 NA intron (NM_033141, intron 3 of 12) (CA)n|Simple_repeat|Simple_repeat 23278 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 272.5-14 chr15 93998416 93998650 + 2 NA intron (NR_120320, intron 3 of 8) intron (NR_120320, intron 3 of 8) 97832 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 374-23 chr3 122505429 122505643 + 2 NA intron (NR_026698, intron 1 of 14) intron (NR_026698, intron 1 of 14) 9403 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 323.5-16 chr2 188809777 188809963 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -19747 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 409-6 chr11 114339310 114339543 + 2 NA Intergenic L1MC1|LINE|L1 40613 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 210.5-28 chr8 87758323 87758476 + 2 NA Intergenic Intergenic 115616 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 420-13 chr16 7980775 7981015 + 2 NA Intergenic MIR|SINE|MIR 608943 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 606.5-8 chr7 7955634 7956063 + 2 NA intron (NR_110018, intron 3 of 4) intron (NR_110018, intron 3 of 4) 12904 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 441-7 chr10 55589207 55589535 + 2 NA intron (NM_001354404, intron 2 of 34) L1PA3|LINE|L1 -9671 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 223.5-41 chr8 89145520 89145732 + 2 NA Intergenic Intergenic 612085 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 349-34 chr6 146292314 146292568 + 2 NA intron (NM_001278065, intron 3 of 9) L1MB5|LINE|L1 -251392 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 183-10 chr18 33080839 33080994 + 2 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -307893 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 331-42 chr9 33305490 33305732 + 2 NA intron (NM_002504, intron 4 of 23) intron (NM_002504, intron 4 of 23) 15095 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 235-15 chr16 62896423 62896559 + 2 NA Intergenic L1MA6|LINE|L1 -860053 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 421-17 chr2 54558659 54558946 + 2 NA exon (NM_178313, exon 1 of 31) exon (NM_178313, exon 1 of 31) 408 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 334-19 chr3 121466735 121467072 + 2 NA intron (NM_199420, intron 24 of 29) intron (NM_199420, intron 24 of 29) 79085 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 454-27 chr6 57225220 57225816 + 2 NA Intergenic Intergenic -3204 NR_103822 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 187.5-33 chr8 140200700 140200927 + 2 NA intron (NM_001160372, intron 17 of 22) L1MC3|LINE|L1 -100278 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 648-4 chr14 84312957 84313516 + 2 NA Intergenic Intergenic -958696 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 575-10 chr4 30658638 30659106 + 2 NA Intergenic Intergenic -61497 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 444-4 chr10 48785957 48786360 + 2 NA intron (NM_020945, intron 19 of 61) L1MD2|LINE|L1 100695 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 478.5-10 chr2 158670253 158670690 + 2 NA intron (NM_001005476, intron 17 of 20) MLT1A0|LTR|ERVL-MaLR 64531 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 242.5-34 chr5 64297983 64298148 + 2 NA intron (NM_001113561, intron 5 of 7) L1PA12|LINE|L1 132222 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 190.5-12 chr2 190082135 190082230 + 2 NA Intergenic MER72|LTR|ERV1 -19453 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 401.5-18 chr22 24791161 24791672 + 2 NA Intergenic MIRc|SINE|MIR -14795 NM_001039948 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 344.5-29 chr6 63657460 63657821 + 2 NA intron (NM_001370350, intron 2 of 14) Tigger2a|DNA|TcMar-Tigger 11114 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 523-6 chr11 41412427 41412784 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 47031 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 182-5 chr12 54268327 54268437 + 2 NA intron (NR_157844, intron 1 of 1) intron (NR_157844, intron 1 of 1) 5767 NR_157844 112935960 NR_157844 SCAT2 CBX5-AS1 S-phase cancer associated transcript 2 ncRNA 492.5-3 chr11 85899337 85899618 + 2 NA intron (NM_001286159, intron 7 of 10) L2c|LINE|L2 44376 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 937-2 chr3 126129428 126130240 + 2 NA intron (NR_072979, intron 13 of 20) intron (NR_072979, intron 13 of 20) 26194 NR_046602 100874204 Hs.742339 NR_046602 ENSG00000250218 ALDH1L1-AS1 - ALDH1L1 antisense RNA 1 ncRNA 330-25 chr2 221092394 221092636 + 2 NA Intergenic L1PB4|LINE|L1 479789 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 356-28 chr20 52702409 52702651 + 2 NA Intergenic Intergenic 81692 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 623.5-2 chr2 51649320 51649699 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 616908 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 351-5 chr11 12401858 12402124 + 2 NA intron (NM_018222, intron 1 of 12) MIR|SINE|MIR 24420 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 577.5-7 chr11 36838400 36839088 + 2 NA Intergenic Intergenic -240465 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 425-20 chr15 62220025 62220290 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -16839 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 178-5 chr1 222263215 222263363 + 2 NA Intergenic Intergenic -284769 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 383-18 chr2 235052388 235052626 + 2 NA intron (NM_001371302, intron 4 of 5) intron (NM_001371302, intron 4 of 5) 24772 NM_001371306 473.5-2 chr10 13460612 13460889 + 2 NA intron (NM_001370075, intron 5 of 8) intron (NM_001370075, intron 5 of 8) 42226 NM_001100912 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 228.5-12 chr14 76806016 76806274 + 2 NA intron (NM_001370747, intron 5 of 11) L1ME3G|LINE|L1 6737 NM_015305 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 352.5-27 chr6 56383430 56383642 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 10592 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 209-10 chr15 57765544 57765719 + 2 NA Intergenic Intergenic 58917 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 223-15 chr16 77611342 77611500 + 2 NA Intergenic Intergenic -111071 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 288-30 chr4 34466001 34466280 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -196393 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 407-2 chr1 159881091 159881473 + 2 NA intron (NM_012337, intron 7 of 11) MIRb|SINE|MIR -18625 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 429-30 chr6 38376084 38376417 + 2 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -105346 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 426-22 chr20 43321358 43321778 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -131662 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 178-2 chr1 115462487 115462635 + 2 NA Intergenic L2b|LINE|L2 -124325 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 422.5-11 chr22 38032706 38033112 + 2 NA intron (NM_001301130, intron 5 of 5) intron (NM_001301130, intron 5 of 5) -24346 NM_001039584 9463 Hs.180871 NM_012407 ENSG00000100151 PICK1 PICK|PRKCABP protein interacting with PRKCA 1 protein-coding 219-31 chr6 50617729 50617921 + 2 NA Intergenic L1MDa|LINE|L1 -95719 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 700-7 chr17 66581358 66581792 + 2 NA intron (NM_002737, intron 3 of 16) AluY|SINE|Alu -164721 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 364-29 chr5 111854489 111854721 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -57903 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 175-4 chr13 104378668 104378838 + 2 NA Intergenic L1MA7|LINE|L1 953553 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 593-2 chr10 98896920 98897327 + 2 NA intron (NM_021828, intron 3 of 11) L1PB2|LINE|L1 27445 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 341-27 chr5 1786066 1786308 + 2 NA Intergenic Intergenic 13650 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 243-6 chr11 30315875 30316064 + 2 NA Intergenic MIRb|SINE|MIR -7135 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 259-19 chr3 175273672 175273915 + 2 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -2697 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 283-34 chr4 101953588 101953749 + 2 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 139826 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 148.5-23 chr7 7334523 7334597 + 2 NA Intergenic Intergenic 79406 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 698-7 chr17 82416852 82417317 + 2 NA intron (NR_033265, intron 1 of 9) intron (NR_033265, intron 1 of 9) -1263 NM_001369487 284004 Hs.744207 NM_173620 ENSG00000169660 HEXD HEXDC hexosaminidase D protein-coding 265-27 chr3 151383918 151384051 + 2 NA intron (NM_053002, intron 32 of 42) intron (NM_053002, intron 32 of 42) 828 NM_022788 64805 Hs.591281 NM_022788 ENSG00000169313 P2RY12 ADPG-R|BDPLT8|HORK3|P2T(AC)|P2Y(12)R|P2Y(AC)|P2Y(ADP)|P2Y(cyc)|P2Y12|SP1999 purinergic receptor P2Y12 protein-coding 432.5-15 chr4 79712500 79713048 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -114697 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 464-4 chr12 105210926 105211342 + 2 NA intron (NM_001251904, intron 5 of 20) intron (NM_001251904, intron 5 of 20) 22271 NM_001251905 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 368-23 chr21 23850788 23851026 + 2 NA Intergenic Intergenic -466072 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 354-10 chr16 51485147 51485367 + 2 NA Intergenic L1M4|LINE|L1 -277262 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 259.5-20 chr2 185920789 185920954 + 2 NA Intergenic L1MCb|LINE|L1 -120720 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 192.5-8 chr14 38519363 38519549 + 2 NA Intergenic Intergenic -263363 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 255-11 chr2 59424245 59424445 + 2 NA Intergenic Intergenic 206637 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 258-7 chr16 57288725 57288939 + 2 NA Intergenic AluJb|SINE|Alu -4160 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 614.5-2 chr14 75878392 75878744 + 2 NA intron (NM_015072, intron 29 of 31) MLT1J|LTR|ERVL-MaLR 103427 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 512-9 chr17 64625461 64625849 + 2 NA intron (NM_022739, intron 1 of 18) MER5A|DNA|hAT-Charlie 36652 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 236-15 chr18 5924020 5924192 + 2 NA Intergenic Intergenic -28152 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 249-11 chr13 90899402 90899702 + 2 NA intron (NR_027039, intron 4 of 5) intron (NR_027039, intron 4 of 5) 27045 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 540.5-7 chr6 150680218 150680784 + 2 NA intron (NM_001029884, intron 2 of 16) L2a|LINE|L2 -3146 NM_001329798 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 275.5-33 chr8 29465156 29465400 + 2 NA Intergenic Intergenic -114594 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 436-19 chr2 128889983 128890263 + 2 NA Intergenic L1M4b|LINE|L1 25523 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 287-5 chr1 203289545 203289819 + 2 NA TTS (NR_117097) TTS (NR_117097) 1982 NR_117098 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 738-6 chr3 162805438 162805977 + 2 NA Intergenic Intergenic 497594 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 236-30 chr6 68680276 68680441 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 45076 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 394.5-26 chr8 119632620 119632920 + 2 NA intron (NM_001330600, intron 2 of 25) intron (NM_001330600, intron 2 of 25) 6069 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 314-33 chr5 62950222 62950416 + 2 NA Intergenic L1PA5|LINE|L1 371500 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 243-9 chr12 86951157 86951488 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -112322 NM_001351286 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 148-6 chr4 59335825 59335936 + 2 NA Intergenic Intergenic 322307 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 277-21 chr18 8582682 8582935 + 2 NA Intergenic AluJb|SINE|Alu -26637 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 397-40 chrX 120782492 120782798 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 93280 NM_001145718 643311 Hs.729566 NM_001145718 ENSG00000236446 CT47B1 CT47.13|CT47A13 cancer/testis antigen family 47 member B1 protein-coding 317-3 chr1 101525510 101525766 + 2 NA Intergenic Intergenic 201801 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 436-27 chr3 189131114 189131476 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -40676 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 677-2 chr10 6871721 6872292 + 2 NA Intergenic Intergenic 92408 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 453-11 chr17 62965743 62966076 + 2 NA promoter-TSS (NM_025185) promoter-TSS (NM_025185) -326 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 287-24 chr3 64680867 64681057 + 2 NA intron (NM_001318781, intron 3 of 38) MIRc|SINE|MIR -3908 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 296-16 chr18 60228844 60229046 + 2 NA Intergenic Intergenic 143830 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 436-4 chr1 112427015 112427360 + 2 NA intron (NM_018704, intron 3 of 5) intron (NM_018704, intron 3 of 5) 30973 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 515-19 chr9 4794846 4795268 + 2 NA intron (NM_001286699, intron 1 of 6) intron (NM_001286699, intron 1 of 6) 2113 NM_005772 10171 Hs.194121 NM_005772 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase like 1 protein-coding 249-31 chr7 37109951 37110211 + 2 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 112285 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 477.5-14 chr16 58349011 58349364 + 2 NA Intergenic Intergenic -43284 NM_001126129 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 356.5-34 chr7 52507246 52507586 + 2 NA Intergenic Intergenic -528217 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 325-6 chr16 13576640 13576893 + 2 NA Intergenic AluSp|SINE|Alu -343391 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 387.5-20 chr4 65034303 65034542 + 2 NA Intergenic MIRb|SINE|MIR -29922 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 200-7 chr12 106571040 106571211 + 2 NA intron (NR_040246, intron 1 of 3) AluJb|SINE|Alu -11782 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 259 chr1 161923272 161923436 + 2 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 101111 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 617 chr10 68023957 68024533 + 2 NA intron (NM_001278185, intron 8 of 23) L1ME3B|LINE|L1 -13362 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 340-34 chr5 159751041 159751321 + 2 NA Intergenic Intergenic 120203 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 508-21 chr3 105399337 105399717 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 32618 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 207 chr1 181347801 181347904 + 2 NA Intergenic Intergenic 111464 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 371-16 chr20 60915644 60916065 + 2 NA Intergenic L1MA6|LINE|L1 -163210 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 196.5-34 chr8 28597719 28597890 + 2 NA Intergenic AluSx|SINE|Alu -92622 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 415.5-11 chr3 172581578 172581981 + 2 NA intron (NR_146714, intron 2 of 3) MLT1K|LTR|ERVL-MaLR 13828 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 251-15 chr2 45855213 45855440 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 203651 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 364.5-4 chr11 40702459 40702681 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -409440 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 198-11 chr2 82500631 82500811 + 2 NA Intergenic Intergenic -356082 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 194.5-17 chr3 3371727 3371847 + 2 NA Intergenic L1ME4b|LINE|L1 -192070 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 295.5-9 chr16 57297029 57297294 + 2 NA Intergenic Intergenic -12489 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 187-18 chr3 25479633 25479877 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 21445 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 186-24 chr5 25824764 25824857 + 2 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 633857 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 960 chr15 70571032 70571658 + 2 NA non-coding (NR_135691, exon 2 of 2) non-coding (NR_135691, exon 2 of 2) 15261 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 718.5-3 chr10 53858138 53858774 + 2 NA intron (NM_001354411, intron 28 of 34) MER102c|DNA|hAT-Charlie -627774 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 442-2 chr1 42308400 42308776 + 2 NA intron (NM_001198850, intron 2 of 12) intron (NM_001198850, intron 2 of 12) 26367 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 342-20 chr2 208935623 208935831 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 393085 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 546.5-7 chr4 31452537 31452942 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -53805 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 337-31 chr8 116944112 116944430 + 2 NA 3' UTR (NM_001025357, exon 2 of 2) 3' UTR (NM_001025357, exon 2 of 2) -5946 NM_001172811 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 599.5-4 chr15 56470851 56471214 + 2 NA Intergenic Intergenic -5895 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 430-25 chr4 150466137 150466456 + 2 NA intron (NM_001367550, intron 44 of 56) intron (NM_001367550, intron 44 of 56) -112793 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 237.5 chr1 42242950 42243164 + 2 NA intron (NM_001198850, intron 4 of 12) L1MA4A|LINE|L1 -78312 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 327-21 chr17 63496470 63496745 + 2 NA intron (NM_152830, intron 12 of 13) intron (NM_152830, intron 12 of 13) 11761 NM_152830 1636 Hs.298469 NM_000789 ENSG00000159640 ACE ACE1|CD143|DCP|DCP1 angiotensin I converting enzyme protein-coding 299-17 chr2 57188063 57188294 + 2 NA Intergenic Intergenic -719473 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 322-2 chr1 113844364 113844611 + 2 NA intron (NM_012411, intron 9 of 18) L1MDa|LINE|L1 -12148 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 515-2 chr1 104207036 104207427 + 2 NA Intergenic L1MB7|LINE|L1 134208 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 440-4 chr1 222560455 222560793 + 2 NA intron (NM_001201536, intron 10 of 11) intron (NM_001201536, intron 10 of 11) -12520 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 427-9 chr10 4458029 4458337 + 2 NA Intergenic L1PA15|LINE|L1 51714 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 450.5-14 chr5 163015630 163015912 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -421800 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 315.5-36 chr7 128762878 128763061 + 2 NA intron (NM_001199673, intron 5 of 5) L1MC5|LINE|L1 12821 NM_001708 611 Hs.656404 NM_001708 ENSG00000128617 OPN1SW BCP|BOP|CBT opsin 1, short wave sensitive protein-coding 618.5-5 chr21 28232352 28232817 + 2 NA Intergenic Intergenic -3917 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 183-18 chr5 25577177 25577281 + 2 NA Intergenic L2a|LINE|L2 386276 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 599.5-6 chr2 35493304 35493929 + 2 NA Intergenic AluSx3|SINE|Alu 22211 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 341.5-27 chr5 64813093 64813441 + 2 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 44337 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 207.5-22 chr3 58800456 58800631 + 2 NA intron (NM_001351532, intron 14 of 14) L2a|LINE|L2 -23928 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 259-30 chr8 140520573 140520818 + 2 NA 3' UTR (NM_012154, exon 19 of 19) 3' UTR (NM_012154, exon 19 of 19) 8699 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 375.5-27 chrX 21727668 21727941 + 2 NA intron (NM_014332, intron 4 of 4) intron (NM_014332, intron 4 of 4) 30312 NM_014332 23676 Hs.86492 NM_014332 ENSG00000091482 SMPX DFN6|DFNX4 small muscle protein X-linked protein-coding 321-28 chr8 37891164 37891350 + 2 NA intron (NM_001002814, intron 1 of 5) intron (NM_001002814, intron 1 of 5) 8240 NM_001002814 80223 Hs.191179 NM_025151 ENSG00000156675 RAB11FIP1 NOEL1A|RCP|rab11-FIP1 RAB11 family interacting protein 1 protein-coding 456.5-13 chr3 171803058 171803355 + 2 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 7277 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 559-5 chr14 84335117 84335474 + 2 NA Intergenic L2|LINE|L2 -936637 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 539-10 chr3 164127609 164128065 + 2 NA Intergenic Intergenic 43719 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 406.5-2 chr1 202701985 202702392 + 2 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 8266 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 326-22 chr20 4291366 4291581 + 2 NA Intergenic Intergenic -42186 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 210-20 chr6 162169798 162170001 + 2 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -557233 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 183-7 chr11 110983771 110983915 + 2 NA Intergenic Intergenic 113475 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 239-4 chr10 87536361 87536522 + 2 NA intron (NM_001178118, intron 4 of 4) L1ME1|LINE|L1 28608 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 202-12 chr21 27547227 27547411 + 2 NA Intergenic Intergenic -175060 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 412-34 chr9 6584580 6585043 + 2 NA intron (NM_000170, intron 15 of 24) intron (NM_000170, intron 15 of 24) 60881 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 532.5-9 chr20 15798037 15798476 + 2 NA intron (NM_001351663, intron 8 of 17) MLT1G3|LTR|ERVL-MaLR 125058 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 177.5 chr1 45278613 45278773 + 2 NA Intergenic AluJr4|SINE|Alu -25217 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 326-13 chr12 7775269 7775478 + 2 NA Intergenic L2a|LINE|L2 10157 NM_001145465 360030 Hs.558004 NM_001145465 ENSG00000205857 NANOGNB - NANOG neighbor homeobox protein-coding 408 chr1 24663339 24663566 + 2 NA intron (NM_001366594, intron 13 of 17) intron (NM_001366594, intron 13 of 17) 19873 NM_001366598 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 616.5-12 chr4 5499985 5500351 + 2 NA 3' UTR (NM_018401, exon 12 of 12) 3' UTR (NM_018401, exon 12 of 12) -24401 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 337-12 chr17 79312528 79312753 + 2 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 203508 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 282-28 chr9 10338308 10338572 + 2 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 274562 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 247-24 chr7 37940993 37941156 + 2 NA intron (NM_001242948, intron 1 of 2) L1MC5a|LINE|L1 19755 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 294.5-16 chr2 6530106 6530277 + 2 NA Intergenic L1ME4a|LINE|L1 103596 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 533.5-4 chr14 46083781 46084122 + 2 NA intron (NR_102702, intron 1 of 3) L1ME2|LINE|L1 19792 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 191.5-16 chr4 117400 117598 + 2 NA Intergenic Intergenic -6977 NR_110527 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 273-19 chr2 143742017 143742277 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -194920 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 161-9 chr3 59408874 59409049 + 2 NA Intergenic Intergenic 249536 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 315.5-26 chr4 44465253 44465622 + 2 NA Intergenic L1MA2|LINE|L1 -16628 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 562.5-16 chr21 23207740 23208056 + 2 NA Intergenic L1PA7|LINE|L1 128614 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 446.5 chr10 106320303 106320631 + 2 NA Intergenic MER52A|LTR|ERV1 180302 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 222-23 chr4 139887719 139887864 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 221972 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 623-11 chr9 75457018 75457720 + 2 NA Intergenic L1PB4|LINE|L1 368855 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 203.5-17 chr20 52405869 52406088 + 2 NA Intergenic L1MB2|LINE|L1 -213993 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 814.5-5 chr2 24626247 24626885 + 2 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 42089 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 568-18 chr8 109069182 109069586 + 2 NA Intergenic Intergenic -17244 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 647-7 chr15 63737547 63738059 + 2 NA intron (NM_003922, intron 12 of 77) HAL1|LINE|L1 96145 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 293.5-30 chr7 50321981 50322174 + 2 NA intron (NM_001220771, intron 1 of 3) intron (NM_001220771, intron 1 of 3) 3029 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 456-9 chr13 112628553 112629022 + 2 NA Intergenic L1MEg|LINE|L1 -18257 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 286-34 chrX 53276707 53276904 + 2 NA intron (NM_001243197, intron 2 of 2) L1ME3G|LINE|L1 4779 NM_015075 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 340.5-6 chr12 8884209 8884487 + 2 NA Intergenic L1PA14|LINE|L1 -30161 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 271-7 chr14 59089778 59089963 + 2 NA Intergenic Intergenic -98797 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 697-4 chr17 33989421 33989900 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 167146 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 355-8 chr12 59080208 59080429 + 2 NA Intergenic MIRb|SINE|MIR -159780 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 565 chr11 35980155 35980621 + 2 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) -29710 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 319-4 chr11 27424204 27424472 + 2 NA intron (NM_018490, intron 1 of 17) AluJb|SINE|Alu -47393 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 608-9 chr2 100280971 100281408 + 2 NA 3' UTR (NM_198461, exon 12 of 12) 3' UTR (NM_198461, exon 12 of 12) 41544 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 465.5-23 chr8 113482402 113482709 + 2 NA Intergenic L1M1|LINE|L1 -45616 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 274-18 chr21 15139780 15140030 + 2 NA Intergenic Intergenic -74905 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 317-28 chr8 86725337 86725555 + 2 NA intron (NM_019098, intron 3 of 17) intron (NM_019098, intron 3 of 17) 18229 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 339-8 chr14 62349938 62350166 + 2 NA Intergenic L1MC3|LINE|L1 -210079 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 403-38 chr8 78670565 78670856 + 2 NA intron (NM_001362969, intron 1 of 9) intron (NM_001362969, intron 1 of 9) 4621 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 356.5-31 chr6 41908257 41908532 + 2 NA intron (NR_131160, intron 2 of 2) intron (NR_131160, intron 2 of 2) 12549 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 277.5-15 chr17 81153998 81154304 + 2 NA intron (NM_001080395, intron 1 of 13) Ricksha|DNA|MULE-MuDR -11356 NM_001354639 388428 Hs.591202 NM_207389 ENSG00000225180 PVALEF AATK-AS1 parvalbumin like EF-hand containing protein-coding 394-21 chr4 59538326 59538826 + 2 NA Intergenic Intergenic 525003 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 151-6 chr19 51103667 51103800 + 2 NA intron (NM_145232, intron 2 of 2) intron (NM_145232, intron 2 of 2) 4676 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 127-3 chr2 77948334 77948410 + 2 NA intron (NR_110288, intron 1 of 3) A-rich|Low_complexity|Low_complexity 6654 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 530-27 chr8 51700229 51700759 + 2 NA intron (NM_144651, intron 1 of 22) (CA)n|Simple_repeat|Simple_repeat 108951 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 323-5 chr10 78115576 78115890 + 2 NA Intergenic Intergenic 81870 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 566-14 chr6 40433234 40433651 + 2 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 55105 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 734.5-4 chr3 4791329 4791967 + 2 NA intron (NM_001168272, intron 51 of 60) intron (NM_001168272, intron 51 of 60) -40058 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 435-37 chr8 101596285 101596574 + 2 NA intron (NM_024915, intron 7 of 15) L1ME4a|LINE|L1 103990 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 411.5-10 chr14 61636997 61637223 + 2 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -58403 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 593.5-5 chr20 37764546 37765029 + 2 NA intron (NM_001281495, intron 6 of 16) intron (NM_001281495, intron 6 of 16) 70757 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 536-13 chr3 172045879 172046267 + 2 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 5542 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 259.5-27 chr3 148823276 148823464 + 2 NA Intergenic Intergenic -4441 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 661.5-13 chr9 87641600 87641992 + 2 NA intron (NM_004938, intron 9 of 25) intron (NM_004938, intron 9 of 25) -84323 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 378.5-11 chr16 75202917 75203266 + 2 NA Intergenic L1MEg|LINE|L1 4070 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 256-34 chrX 41897260 41897506 + 2 NA intron (NM_003688, intron 1 of 26) L1M2|LINE|L1 25651 NM_001126054 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 272.5-31 chr5 23379877 23380060 + 2 NA Intergenic L1PA6|LINE|L1 -127641 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 332-19 chr2 237533460 237533758 + 2 NA intron (NM_001281473, intron 7 of 12) AluSq2|SINE|Alu 22678 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 392.5-25 chr5 131301285 131301499 + 2 NA intron (NM_001038702, intron 1 of 4) L1MA5A|LINE|L1 37383 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 238.5-9 chr11 84073495 84073723 + 2 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 199671 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 589.5 chr1 192578481 192578836 + 2 NA intron (NM_002922, intron 4 of 4) intron (NM_002922, intron 4 of 4) 2885 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 353.5-7 chr11 75556929 75557459 + 2 NA Intergenic Intergenic -5059 NM_001207014 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 598.5-12 chr8 88747148 88747847 + 2 NA Intergenic LTR7B|LTR|ERV1 -420014 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 383-9 chr12 114691396 114691658 + 2 NA Intergenic Intergenic -7352 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 410-6 chr14 73246706 73246984 + 2 NA promoter-TSS (NR_135248) promoter-TSS (NR_135248) -844 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 396-14 chr19 43444990 43445276 + 2 NA Intergenic L2|LINE|L2 20475 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 636-19 chr5 81339360 81339755 + 2 NA intron (NM_130767, intron 11 of 14) intron (NM_130767, intron 11 of 14) 37970 NM_001131035 84240 Hs.15536 NM_032280 ENSG00000131732 ZCCHC9 PPP1R41 zinc finger CCHC-type containing 9 protein-coding 560 chr1 233588892 233589318 + 2 NA Intergenic HERVL74-int|LTR|ERVL -25001 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 447.5-18 chr4 52530768 52531315 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger 125498 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 487-20 chr2 29156918 29157353 + 2 NA intron (NM_001287528, intron 10 of 14) intron (NM_001287528, intron 10 of 14) 41720 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 325 chr1 110351858 110352095 + 2 NA Intergenic Intergenic 12653 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 544.5-8 chr21 21771013 21771466 + 2 NA intron (NR_109958, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 24254 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 566-3 chr11 81174557 81174909 + 2 NA Intergenic Intergenic -411930 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 390-8 chr16 65882344 65882599 + 2 NA Intergenic L1ME3B|LINE|L1 -306171 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 413-22 chr20 14074625 14074959 + 2 NA intron (NM_001351663, intron 2 of 17) MER44C|DNA|TcMar-Tigger 79276 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 242 chr1 110938552 110938751 + 2 NA Intergenic L1MA2|LINE|L1 25271 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 757-8 chr7 13974809 13975302 + 2 NA intron (NM_001163148, intron 5 of 12) MER3|DNA|hAT-Charlie 11459 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 509.5-13 chr7 41774482 41775090 + 2 NA intron (NR_027118, intron 3 of 3) AluY|SINE|Alu -71696 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 283-32 chr3 66566 66790 + 2 NA Intergenic Intergenic 54927 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 336-13 chr12 13734832 13735026 + 2 NA intron (NM_000834, intron 3 of 12) L2c|LINE|L2 245427 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 476.5-14 chr6 76782395 76782697 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -188923 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 314-27 chr3 115213833 115214128 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -66692 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 309.5-17 chr3 170122076 170122317 + 2 NA intron (NM_024947, intron 9 of 14) AluJo|SINE|Alu 59537 NM_024947 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 288-7 chr11 131143851 131144093 + 2 NA Intergenic Intergenic -226643 NM_001352007 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 324-6 chr10 8565188 8565460 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 29067 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 430.5-18 chr3 34360189 34360473 + 2 NA Intergenic Intergenic 561701 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 528-27 chr5 20210017 20210510 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -95288 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 532.5-21 chr9 14733188 14733524 + 2 NA TTS (NM_001370058) TTS (NM_001370058) -10623 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 355-39 chr7 11379716 11380027 + 2 NA intron (NM_015204, intron 23 of 26) intron (NM_015204, intron 23 of 26) 405999 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 154-2 chr14 80790326 80790489 + 2 NA intron (NM_152446, intron 14 of 24) intron (NM_152446, intron 14 of 24) 151331 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 210-19 chr5 87247779 87247937 + 2 NA non-coding (NR_105018, exon 4 of 4) non-coding (NR_105018, exon 4 of 4) -8657 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 286-23 chr4 37101542 37101729 + 2 NA Intergenic Intergenic 99856 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 333.5-20 chr8 54811349 54811690 + 2 NA Intergenic L2c|LINE|L2 195423 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 251-13 chr17 77080689 77080857 + 2 NA Intergenic AluSx|SINE|Alu -7870 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 485.5-24 chr8 78813856 78814172 + 2 NA Intergenic L1MA8|LINE|L1 -8491 NM_001199886 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 406-23 chr7 97002620 97002922 + 2 NA intron (NR_015448, intron 1 of 2) intron (NR_015448, intron 1 of 2) -2782 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 649-13 chr7 42758357 42758827 + 2 NA Intergenic L1ME3D|LINE|L1 -52145 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 320-22 chr5 122354019 122354219 + 2 NA intron (NM_001308107, intron 1 of 8) L2b|LINE|L2 -36970 NM_001308106 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 246.5-39 chr7 77894464 77894598 + 2 NA intron (NM_001127357, intron 3 of 17) intron (NM_001127357, intron 3 of 17) 54401 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 393-20 chr20 43958492 43958736 + 2 NA intron (NM_032883, intron 2 of 9) L2b|LINE|L2 12718 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 658.5-10 chr5 64551224 64551945 + 2 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -24066 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 283-47 chr8 140170411 140170636 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -69988 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 897-2 chr12 64753526 64754097 + 2 NA intron (NM_002076, intron 1 of 13) intron (NM_002076, intron 1 of 13) 5595 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 318-25 chr3 86927407 86927658 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 63617 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 293-6 chr12 21013251 21013434 + 2 NA intron (NM_001371097, intron 13 of 15) L2|LINE|L2 -2354 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 434-23 chr7 17298162 17298408 + 2 NA promoter-TSS (NM_001621) promoter-TSS (NM_001621) -367 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 473-24 chr7 117199353 117199699 + 2 NA intron (NR_002332, intron 8 of 8) intron (NR_002332, intron 8 of 8) 16845 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 313-10 chr12 57899179 57899406 + 2 NA Intergenic Intergenic -2810 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 402-2 chr1 100300165 100300425 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 19054 NR_030279 693138 NR_030279 ENSG00000207750 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 416-25 chr7 17652825 17653176 + 2 NA Intergenic Intergenic -94091 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 396-16 chr2 75043254 75043580 + 2 NA Intergenic Intergenic -47395 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 370-40 chrX 101348938 101349291 + 2 NA promoter-TSS (NM_004085) promoter-TSS (NM_004085) -372 NM_004085 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8A protein-coding 335-2 chr1 205356106 205356317 + 2 NA intron (NM_001271865, intron 2 of 7) intron (NM_001271865, intron 2 of 7) 711 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 585-2 chr10 22685973 22686478 + 2 NA intron (NM_005028, intron 1 of 9) L3|LINE|CR1 27883 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 386-29 chr7 111207677 111207936 + 2 NA intron (NM_032549, intron 3 of 5) AluSc|SINE|Alu 116679 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 437-6 chr10 31477335 31477674 + 2 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -77749 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 459.5-2 chr1 73919577 73919997 + 2 NA Intergenic Intergenic 245108 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 504-15 chr22 32028084 32028607 + 2 NA intron (NR_149128, intron 4 of 4) intron (NR_149128, intron 4 of 4) -14916 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 471-26 chr5 92647931 92648280 + 2 NA Intergenic L1MB7|LINE|L1 923238 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 200.5-22 chr3 7055801 7055907 + 2 NA intron (NM_000844, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat -161837 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 313-18 chr2 23456354 23456593 + 2 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 71294 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 362.5-30 chr8 3366487 3366857 + 2 NA intron (NM_033225, intron 20 of 69) intron (NM_033225, intron 20 of 69) -638221 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 155-10 chr6 37299141 37299276 + 2 NA intron (NR_130108, intron 8 of 12) L1ME3G|LINE|L1 -41053 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 401-7 chr10 58970875 58971368 + 2 NA Intergenic AluJr|SINE|Alu -28397 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 332.5-4 chr10 32985717 32985908 + 2 NA Intergenic Intergenic -27582 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 206.5-34 chr5 56991382 56991563 + 2 NA Intergenic L2b|LINE|L2 -39342 NM_001297599 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 233.5-28 chr7 41709870 41710042 + 2 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) -6866 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 315-5 chr10 58381964 58382177 + 2 NA Intergenic Intergenic -3073 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 239.5-14 chr3 27525544 27525775 + 2 NA Intergenic Intergenic -41275 NM_001321106 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 420-21 chr2 196367679 196367889 + 2 NA intron (NM_020760, intron 2 of 28) L1MA3|LINE|L1 -5607 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 246.5-33 chr5 164756155 164756408 + 2 NA Intergenic Intergenic 286002 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 455-35 chr8 117462422 117462903 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -58051 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 383 chr1 13370796 13370991 + 2 NA exon (NM_001099790, exon 2 of 3) exon (NM_001099790, exon 2 of 3) 1054 NM_001099790 645414 NM_001099790 ENSG00000204480 PRAMEF19 - PRAME family member 19 protein-coding 350-39 chr7 139800925 139801133 + 2 NA intron (NM_001166254, intron 3 of 14) L1M5|LINE|L1 22787 NR_159365 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 550.5-8 chr17 60084034 60084446 + 2 NA intron (NR_030732, intron 2 of 2) AluY|SINE|Alu 4227 NR_030732 645638 Hs.463652 NR_030732 ENSG00000261040 WFDC21P LNCDC|linc-DC|lnc-DC WAP four-disulfide core domain 21, pseudogene pseudo 240-38 chr6 53112228 53112389 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 36533 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 346-32 chr5 169864002 169864286 + 2 NA 3' UTR (NM_001346304, exon 4 of 4) 3' UTR (NM_001346304, exon 4 of 4) 116351 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 330-41 chr7 84112382 84112740 + 2 NA intron (NM_006080, intron 3 of 16) intron (NM_006080, intron 3 of 16) 82228 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 374-11 chr17 69299735 69300060 + 2 NA intron (NM_018672, intron 8 of 37) intron (NM_018672, intron 8 of 37) 15736 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 281-30 chr4 46592307 46592494 + 2 NA Intergenic L2b|LINE|L2 -202272 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 586-8 chr20 2972872 2973224 + 2 NA intron (NM_080841, intron 5 of 22) L1ME4b|LINE|L1 49841 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 412-14 chr18 3018284 3018531 + 2 NA Intergenic AluJr|SINE|Alu -6460 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 373-19 chr16 75675980 75676226 + 2 NA Intergenic AluSq2|SINE|Alu 25358 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 526-13 chr4 10449634 10450192 + 2 NA intron (NM_053042, intron 2 of 2) intron (NM_053042, intron 2 of 2) 7513 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 634.5-5 chr16 20988275 20988646 + 2 NA intron (NM_001347886, intron 44 of 61) AluSx3|SINE|Alu 87198 NM_001369645 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 216-13 chr2 83616321 83616513 + 2 NA Intergenic Intergenic 93603 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 299 chr1 4658204 4658372 + 2 NA intron (NM_018836, intron 1 of 5) intron (NM_018836, intron 1 of 5) 3679 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 289-42 chr8 84757732 84758099 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 51988 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 592-4 chr12 41230795 41231377 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 42766 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 376-5 chr14 72694055 72694531 + 2 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 177473 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 371-21 chr4 3129307 3129534 + 2 NA intron (NM_002111, intron 12 of 66) intron (NM_002111, intron 12 of 66) 54739 NM_002111 3064 Hs.518450 NM_002111 ENSG00000197386 HTT HD|IT15|LOMARS huntingtin protein-coding 253.5-17 chr2 56707121 56707337 + 2 NA Intergenic Intergenic -521459 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 363-19 chr19 27715078 27715328 + 2 NA Intergenic ALR/Alpha|Satellite|centr -78228 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 700 chr1 164814975 164815502 + 2 NA intron (NM_001204961, intron 6 of 7) intron (NM_001204961, intron 6 of 7) -40597 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 689-14 chr8 120111055 120111699 + 2 NA Intergenic Intergenic -13725 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 286.5-26 chr6 38572524 38572805 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 23403 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 198-22 chr7 91611315 91611460 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 269315 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 265-20 chr2 49969592 49969809 + 2 NA intron (NM_001330093, intron 21 of 22) 5S|rRNA|rRNA 4503 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 373-34 chr4 167232970 167233292 + 2 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 1295 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 632-7 chr2 190732614 190732980 + 2 NA Intergenic AluSx|SINE|Alu 73639 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 280-22 chr21 45158328 45158486 + 2 NA intron (NM_001346687, intron 1 of 11) intron (NM_001346687, intron 1 of 11) 5877 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 630.5 chr1 154982866 154983405 + 2 NA promoter-TSS (NM_001184892) promoter-TSS (NM_001184892) -209 NM_001184892 80308 Hs.118666 NM_025207 ENSG00000160688 FLAD1 FAD1|FADS|LSMFLAD|PP591 flavin adenine dinucleotide synthetase 1 protein-coding 522.5-12 chr3 174244059 174244566 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -323516 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 486-19 chr18 7774632 7774966 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 207483 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 231.5-9 chr17 33461690 33461943 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 71944 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 519-17 chrX 91083437 91083835 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -351203 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 499-5 chr16 77787298 77787710 + 2 NA Intergenic Intergenic -1060 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 524-11 chr20 4573282 4573635 + 2 NA Intergenic Intergenic -112998 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 309-25 chr3 72384947 72385141 + 2 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 61579 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 418-16 chr22 34731897 34732127 + 2 NA Intergenic Intergenic 265904 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 657-8 chr2 129418384 129418880 + 2 NA Intergenic L1MB7|LINE|L1 -144741 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 277-12 chr14 43816548 43816732 + 2 NA Intergenic Intergenic 690643 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 383-39 chr8 138831451 138831817 + 2 NA intron (NM_152888, intron 5 of 64) L2c|LINE|L2 82407 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 391.5-17 chr2 49190948 49191172 + 2 NA Intergenic Intergenic -36533 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 461.5 chr1 88798842 88799191 + 2 NA intron (NM_001320707, intron 8 of 20) intron (NM_001320707, intron 8 of 20) 92551 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 347-8 chr15 93870418 93870752 + 2 NA intron (NR_120321, intron 3 of 3) intron (NR_120321, intron 3 of 3) 14025 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 120-7 chr9 80671534 80671615 + 2 NA Intergenic Intergenic 696551 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 433-14 chr2 13636546 13636945 + 2 NA Intergenic Intergenic -629732 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 250-12 chr15 57848858 57849093 + 2 NA Intergenic L2c|LINE|L2 142261 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 555-9 chr16 24520652 24521153 + 2 NA Intergenic Intergenic -18664 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 588-29 chr5 123720250 123720621 + 2 NA Intergenic L2a|LINE|L2 175018 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 241-13 chr3 79701452 79701824 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 66360 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 276-21 chr17 81337078 81337399 + 2 NA Intergenic Intergenic -27990 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 312 chr1 71153805 71153966 + 2 NA intron (NR_046217, intron 2 of 3) MER50|LTR|ERV1 72561 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 379.5-16 chr3 106564344 106564634 + 2 NA Intergenic Intergenic 676149 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 406.5-24 chr7 7264876 7265324 + 2 NA intron (NR_108073, intron 2 of 3) MLT1E2|LTR|ERVL-MaLR 9946 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 247-29 chr8 137576132 137576358 + 2 NA Intergenic L2c|LINE|L2 -162657 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 413-26 chr22 41375811 41376051 + 2 NA intron (NM_001145398, intron 1 of 3) intron (NM_001145398, intron 1 of 3) -6011 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 342.5-28 chr5 159758322 159758586 + 2 NA Intergenic Intergenic 112930 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 366.5-30 chr8 71382540 71382909 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -20655 NM_000503 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 372.5-19 chr4 59383638 59383884 + 2 NA Intergenic Intergenic 370188 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 440-20 chr20 52009613 52010034 + 2 NA Intergenic Intergenic 95661 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 289.5-28 chr3 55299867 55300155 + 2 NA Intergenic L1MC4|LINE|L1 121839 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 361-8 chr10 97552745 97552976 + 2 NA intron (NM_024954, intron 1 of 2) L1ME4a|LINE|L1 -19581 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 470.5-7 chr2 66686316 66686637 + 2 NA intron (NR_110156, intron 4 of 5) intron (NR_110156, intron 4 of 5) 16751 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 293-29 chr7 28680698 28680984 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -5292 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 177-18 chr8 123696022 123696152 + 2 NA intron (NM_001003954, intron 5 of 11) L1ME3G|LINE|L1 41306 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 451-8 chr10 133117941 133118192 + 2 NA intron (NM_001083909, intron 5 of 6) intron (NM_001083909, intron 5 of 6) 15820 NM_001291085 84435 Hs.435183 NM_032422 ENSG00000197177 ADGRA1 GPR123 adhesion G protein-coupled receptor A1 protein-coding 273.5-22 chr5 67572811 67573041 + 2 NA Intergenic L1M4|LINE|L1 73863 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 396-24 chr5 169875366 169875604 + 2 NA intron (NM_001129891, intron 3 of 3) intron (NM_001129891, intron 3 of 3) 105010 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 348.5-27 chr8 107283960 107284301 + 2 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 52385 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 199-7 chr17 67169786 67169895 + 2 NA intron (NM_001330447, intron 13 of 32) MSTD-int|LTR|ERVL-MaLR -74936 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 447-8 chr16 73680921 73681209 + 2 NA Intergenic Intergenic 294260 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 384.5 chr1 5914540 5914828 + 2 NA intron (NR_111987, intron 11 of 32) intron (NR_111987, intron 11 of 32) -51943 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 385-25 chr3 125517186 125517407 + 2 NA intron (NM_003794, intron 1 of 13) MIRb|SINE|MIR 2906 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 486-24 chr2 234239887 234240215 + 2 NA Intergenic L1MC4a|LINE|L1 189349 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 764 chr1 109980841 109981384 + 2 NA Intergenic L2c|LINE|L2 -3653 NM_006621 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 354-27 chr6 72651746 72652112 + 2 NA intron (NR_120503, intron 2 of 3) intron (NR_120503, intron 2 of 3) 21434 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 276-19 chr17 42644304 42644574 + 2 NA Intergenic AluSz|SINE|Alu -14845 NM_001320509 27175 Hs.279669 NM_016437 ENSG00000037042 TUBG2 - tubulin gamma 2 protein-coding 276 chr1 30037879 30038166 + 2 NA promoter-TSS (NR_110790) promoter-TSS (NR_110790) -410 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 252-33 chr9 114710412 114710567 + 2 NA Intergenic AluJb|SINE|Alu -28400 NR_144867 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 322-11 chr19 40090396 40090585 + 2 NA intron (NM_001142578, intron 1 of 5) intron (NM_001142578, intron 1 of 5) 413 NM_001010880 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 524-19 chr8 81042635 81043056 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 69223 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 359-35 chr7 3641097 3641330 + 2 NA intron (NM_152744, intron 3 of 44) intron (NM_152744, intron 3 of 44) 339961 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 538-16 chr7 24368357 24368730 + 2 NA Intergenic Intergenic 84353 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 350-27 chr5 11617489 11617782 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -28569 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 228-17 chr7 109788267 109788443 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat 171858 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 564.5-11 chr4 31336716 31337383 + 2 NA Intergenic Intergenic 165905 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 257-35 chr4 97146951 97147201 + 2 NA Intergenic Intergenic -219850 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 214.5-30 chr7 36587299 36587443 + 2 NA intron (NM_001177507, intron 11 of 19) Charlie1a|DNA|hAT-Charlie 12749 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 317.5-12 chr16 2329064 2329326 + 2 NA intron (NM_001089, intron 2 of 32) intron (NM_001089, intron 2 of 32) 11533 NM_001089 21 Hs.26630 NM_001089 ENSG00000167972 ABCA3 ABC-C|ABC3|EST111653|LBM180|SMDP3 ATP binding cassette subfamily A member 3 protein-coding 277.5-17 chr19 51260547 51260877 + 2 NA intron (NM_173635, intron 1 of 5) L1ME3B|LINE|L1 3002 NM_173635 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 447-32 chr9 77366138 77366477 + 2 NA intron (NM_001018038, intron 60 of 68) Tigger5b|DNA|TcMar-Tigger -81342 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 232.5-16 chr14 64453876 64454041 + 2 NA intron (NM_005956, intron 25 of 27) MIR3|SINE|MIR -11541 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 316-20 chr20 14043816 14044021 + 2 NA intron (NM_001351663, intron 2 of 17) MER21A|LTR|ERVL 48402 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 343.5-11 chr12 66204201 66204530 + 2 NA intron (NM_007199, intron 2 of 11) intron (NM_007199, intron 2 of 11) 15151 NM_001142523 11213 Hs.369265 NM_007199 ENSG00000090376 IRAK3 ASRT5|IRAKM interleukin 1 receptor associated kinase 3 protein-coding 652-7 chr2 11567421 11568007 + 2 NA intron (NM_014668, intron 4 of 32) intron (NM_014668, intron 4 of 32) 25028 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 366 chr11 35316662 35316905 + 2 NA intron (NM_001252652, intron 3 of 11) intron (NM_001252652, intron 3 of 11) 102775 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 451-21 chr7 33081035 33081445 + 2 NA Intergenic LTR49-int|LTR|ERV1 -18443 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 225.5-24 chr2 216547346 216547532 + 2 NA Intergenic Intergenic 48595 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 629-3 chr10 104539272 104539671 + 2 NA Intergenic Intergenic -59196 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 469-9 chr15 65749087 65749432 + 2 NA intron (NM_005848, intron 4 of 31) MIRb|SINE|MIR -29927 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 576.5-2 chr11 82668136 82668596 + 2 NA Intergenic L1PB4|LINE|L1 65498 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 372-36 chr7 123436865 123437119 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 95956 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 505-24 chr8 117454169 117454566 + 2 NA Intergenic Intergenic -66346 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 228-12 chr5 24293602 24293735 + 2 NA Intergenic Intergenic 342320 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 197.5-28 chr4 77558567 77558747 + 2 NA intron (NM_006419, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL 46904 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 569-16 chr5 15298296 15298967 + 2 NA Intergenic Intergenic -32071 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 320-11 chr2 24668785 24668963 + 2 NA intron (NM_001362950, intron 6 of 23) HAL1|LINE|L1 84397 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 116.5-5 chr12 54400076 54400194 + 2 NA intron (NM_002205, intron 25 of 29) intron (NM_002205, intron 25 of 29) -8837 NM_001130967 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 183-16 chr22 33412590 33412754 + 2 NA intron (NM_133642, intron 7 of 14) AluSx|SINE|Alu 23997 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 250.5-34 chr6 101033990 101034115 + 2 NA Intergenic L1MC5a|LINE|L1 -152680 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 240-6 chr10 32090496 32090716 + 2 NA Intergenic L1PA16|LINE|L1 -34181 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 433-24 chr5 59576245 59576641 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 10055 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 253-20 chr3 89675921 89676125 + 2 NA Intergenic L1MEc|LINE|L1 568402 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 625.5-9 chr3 105381434 105382040 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 14828 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 289-8 chr10 66705484 66705674 + 2 NA intron (NM_001127384, intron 9 of 17) L1MD|LINE|L1 -220457 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 353-30 chr4 90883877 90884260 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 649037 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 410-21 chr3 168714417 168714658 + 2 NA intron (NR_021485, intron 6 of 15) intron (NR_021485, intron 6 of 15) 162683 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 345-37 chr6 81741368 81741702 + 2 NA Intergenic MER53|DNA|hAT 11146 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 547 chr1 184497345 184497821 + 2 NA intron (NM_030806, intron 2 of 5) intron (NM_030806, intron 2 of 5) 110554 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 376-17 chr2 125705607 125705946 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 412209 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 351.5-7 chr14 57092014 57092255 + 2 NA Intergenic L2a|LINE|L2 176771 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 239.5-7 chr15 26458709 26458962 + 2 NA Intergenic Intergenic 170255 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 573.5-11 chr7 52058617 52058926 + 2 NA Intergenic Intergenic -665515 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 513-2 chr1 44848879 44849340 + 2 NA Intergenic Intergenic -5856 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 655.5-5 chr15 71824917 71825449 + 2 NA 3' UTR (NM_006901, exon 42 of 42) 3' UTR (NM_006901, exon 42 of 42) 14629 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 267-7 chr12 63927474 63927709 + 2 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 82891 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 303-12 chr14 102897003 102897278 + 2 NA intron (NM_145725, intron 9 of 11) intron (NM_145725, intron 9 of 11) -25516 NM_030943 81693 Hs.534494 NM_030943 ENSG00000166126 AMN PRO1028|amnionless amnion associated transmembrane protein protein-coding 523.5-16 chr9 27747440 27747732 + 2 NA Intergenic Intergenic -173720 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 213-10 chr2 95169929 95170095 + 2 NA intron (NM_001291604, intron 1 of 2) MIR|SINE|MIR 4203 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 364-35 chr6 38470593 38471119 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -10740 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 271-31 chr9 115663474 115663673 + 2 NA Intergenic Intergenic 80666 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 237-30 chr8 89616800 89616976 + 2 NA Intergenic Intergenic 140823 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 492-22 chr21 20788350 20788684 + 2 NA intron (NR_109787, intron 1 of 6) MER31A|LTR|ERV1 14591 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 251-14 chr2 22549063 22549227 + 2 NA Intergenic Intergenic 12666 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 336-45 chr6 141585431 141585650 + 2 NA Intergenic Intergenic 503259 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 392.5-20 chr2 114029564 114029990 + 2 NA Intergenic Intergenic -49793 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 585-11 chr4 139368186 139368482 + 2 NA intron (NM_057175, intron 14 of 19) AluJo|SINE|Alu -65783 NM_001184987 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 581.5-8 chr2 123443337 123443725 + 2 NA Intergenic MER41E|LTR|ERV1 -370050 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 383-31 chr5 115441289 115441664 + 2 NA Intergenic L1M2|LINE|L1 103299 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 338.5-7 chr11 48108751 48109151 + 2 NA intron (NM_001098503, intron 1 of 8) L2a|LINE|L2 12169 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 435-6 chr10 71791339 71791758 + 2 NA TTS (NR_106974) TTS (NR_106974) 801 NR_106974 102465689 NR_106974 ENSG00000274824 MIR7152 hsa-mir-7152 microRNA 7152 ncRNA 394.5-23 chr5 168966247 168966797 + 2 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -46705 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 425-10 chr10 57041257 57041600 + 2 NA Intergenic Intergenic 263131 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 252-7 chr14 20991150 20991324 + 2 NA intron (NM_022734, intron 3 of 13) intron (NM_022734, intron 3 of 13) 1257 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 417-19 chr15 48194542 48194840 + 2 NA intron (NM_001370416, intron 1 of 1) intron (NM_001370416, intron 1 of 1) 2653 NM_001370416 399697 Hs.721408 NM_001145668 ENSG00000233932 CTXN2 - cortexin 2 protein-coding 312-19 chr4 38883936 38884170 + 2 NA intron (NM_001350635, intron 2 of 8) MER5A|DNA|hAT-Charlie 16021 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 400.5-24 chr7 3607763 3608019 + 2 NA intron (NM_152744, intron 1 of 44) MIR|SINE|MIR 306639 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 308.5-26 chr5 88300059 88300303 + 2 NA intron (NR_105019, intron 6 of 7) MIR|SINE|MIR 31165 NR_105019 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 662-3 chr18 2804437 2804842 + 2 NA 3' UTR (NM_015295, exon 48 of 48) 3' UTR (NM_015295, exon 48 of 48) -42367 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 384-29 chr8 120852177 120852527 + 2 NA Intergenic Intergenic -40306 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 186.5-19 chr22 26708846 26708990 + 2 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 36075 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 359-16 chr15 63728817 63729060 + 2 NA intron (NM_003922, intron 16 of 77) L2|LINE|L2 105010 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 291-20 chr5 39949269 39949546 + 2 NA Intergenic Intergenic -102884 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 250-39 chr8 134802460 134802672 + 2 NA Intergenic Intergenic -1959 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 309-26 chr3 107607946 107608182 + 2 NA intron (NM_001276286, intron 2 of 16) L1MA3|LINE|L1 85102 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 470-17 chr18 3150447 3150783 + 2 NA intron (NM_019856, intron 12 of 36) MER20|DNA|hAT-Charlie 69353 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 391.5-5 chr11 71113507 71113958 + 2 NA intron (NM_012309, intron 3 of 24) intron (NM_012309, intron 3 of 24) 111064 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 818.5-4 chr6 129578271 129578713 + 2 NA 3' UTR (NM_033515, exon 15 of 15) 3' UTR (NM_033515, exon 15 of 15) 131685 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 266-2 chr1 170258595 170258743 + 2 NA Intergenic Intergenic 25539 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 155-6 chr2 157321321 157321427 + 2 NA exon (NM_001304345, exon 4 of 4) exon (NM_001304345, exon 4 of 4) 4450 NM_020711 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 245-36 chr6 139725053 139725268 + 2 NA Intergenic Intergenic -45913 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 413-30 chr3 126365839 126366244 + 2 NA Intergenic Intergenic -8633 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 152-8 chr20 52114123 52114267 + 2 NA intron (NM_199427, intron 5 of 8) L1MC4a|LINE|L1 -8711 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 212.5-5 chr10 24468844 24469063 + 2 NA intron (NM_001282770, intron 1 of 11) intron (NM_001282770, intron 1 of 11) 2422 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 224-29 chr7 23420411 23420627 + 2 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 24073 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 390.5-17 chr20 15740324 15740579 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 182863 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 411-33 chr5 133283983 133284329 + 2 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 143550 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 263-2 chr1 180416260 180416411 + 2 NA intron (NM_032360, intron 4 of 7) intron (NM_032360, intron 4 of 7) 22055 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 281-45 chr8 130248318 130248494 + 2 NA intron (NM_001362925, intron 3 of 29) L2|LINE|L2 48127 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 327 chr1 109162564 109162841 + 2 NA intron (NM_020775, intron 2 of 21) intron (NM_020775, intron 2 of 21) -23847 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 272-27 chr4 55279499 55279702 + 2 NA Intergenic L1MA9|LINE|L1 -66642 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 176.5-17 chr3 94788562 94788799 + 2 NA Intergenic MIR3|SINE|MIR -149583 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 251-26 chr4 32532541 32532808 + 2 NA Intergenic L1MA1|LINE|L1 181636 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 430-7 chr12 7455806 7456053 + 2 NA Intergenic L1MA8|LINE|L1 -11744 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 431-31 chr9 124639263 124639725 + 2 NA intron (NM_033334, intron 2 of 9) MIRb|SINE|MIR -18942 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 338.5-14 chr17 35449702 35450045 + 2 NA Intergenic Intergenic -1107 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10|hSLFN13 schlafen family member 13 protein-coding 841 chr13 85396496 85397021 + 2 NA intron (NR_046989, intron 1 of 3) L1PA12|LINE|L1 33155 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 511.5-9 chr14 60739901 60740440 + 2 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 5409 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 428.5 chr1 109077548 109077853 + 2 NA Intergenic LTR56|LTR|ERV1 -1697 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 623-7 chr5 84965941 84966465 + 2 NA Intergenic Intergenic -581323 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 190-11 chr3 113832217 113832452 + 2 NA Intergenic L1M4|LINE|L1 -6454 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 247 chr1 26067570 26067796 + 2 NA promoter-TSS (NM_032588) promoter-TSS (NM_032588) -49 NM_032588 84676 Hs.279709 NM_032588 ENSG00000158022 TRIM63 IRF|MURF1|MURF2|RNF28|SMRZ tripartite motif containing 63 protein-coding 446-6 chr10 72758140 72758416 + 2 NA intron (NR_073062, intron 3 of 9) SVA_A|Retroposon|SVA 37249 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 296-17 chr19 42331106 42331334 + 2 NA intron (NM_001271938, intron 1 of 41) MIRb|SINE|MIR 5585 NM_001410 1954 Hs.132483 NM_001410 ENSG00000105429 MEGF8 C19orf49|CRPT2|EGFL4|SBP1 multiple EGF like domains 8 protein-coding 402.5-15 chr2 51210609 51210863 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 178135 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 508-11 chr20 9867533 9868129 + 2 NA Intergenic Intergenic -28755 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 209.5-17 chr17 63654977 63655111 + 2 NA intron (NM_203351, intron 5 of 16) AluSx4|SINE|Alu 32627 NM_001363768 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 487-18 chr16 12081149 12081467 + 2 NA intron (NM_032167, intron 11 of 20) intron (NM_032167, intron 11 of 20) 104574 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 280-2 chr1 88916283 88916475 + 2 NA Intergenic L1MD3|LINE|L1 -24812 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 245-15 chr15 79038175 79038320 + 2 NA intron (NM_001145648, intron 5 of 26) intron (NM_001145648, intron 5 of 26) -32587 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 346-22 chr2 178599805 178600142 + 2 NA intron (NM_001256850, intron 238 of 312) intron (NM_001256850, intron 238 of 312) 76782 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 345-23 chr2 106740082 106740288 + 2 NA Intergenic Intergenic 145843 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 359.5-18 chr18 52357378 52357625 + 2 NA intron (NM_005215, intron 1 of 28) L1MC3|LINE|L1 17304 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 466-16 chr19 9866964 9867290 + 2 NA intron (NM_058164, intron 1 of 5) AluSx1|SINE|Alu -8952 NM_001304348 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 742.5-7 chr4 52874662 52875220 + 2 NA intron (NM_152540, intron 8 of 8) MIR|SINE|MIR 12624 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 201.5-26 chr5 162250589 162250697 + 2 NA Intergenic Intergenic 183001 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 326-36 chr7 85713757 85714046 + 2 NA Intergenic Intergenic 292779 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 402-30 chr6 64981342 64981564 + 2 NA intron (NM_001292009, intron 14 of 43) L2|LINE|L2 -319965 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 324-27 chr3 132336441 132336758 + 2 NA intron (NM_001292037, intron 4 of 8) L2a|LINE|L2 19192 NM_001292037 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 428.5-21 chr8 109160577 109160836 + 2 NA Intergenic Intergenic 74078 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 338-16 chr2 49102889 49103279 + 2 NA intron (NM_000145, intron 1 of 9) MER106B|DNA|hAT-Charlie 43481 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 449-3 chr1 117570800 117571261 + 2 NA Intergenic MIRc|SINE|MIR 34740 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 236.5-11 chr12 67815196 67815359 + 2 NA Intergenic MER77|LTR|ERVL -85802 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 320-32 chr7 125054861 125055075 + 2 NA intron (NR_125718, intron 4 of 10) intron (NR_125718, intron 4 of 10) -124985 NR_003104 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 804-2 chr13 65278824 65279264 + 2 NA Intergenic Intergenic -587003 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 488.5-17 chr9 23807016 23807303 + 2 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 14150 NM_001351476 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 336-14 chr12 40312414 40312683 + 2 NA intron (NM_198578, intron 31 of 50) intron (NM_198578, intron 31 of 50) -80846 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 355-27 chr4 64738960 64739219 + 2 NA Intergenic Intergenic 265411 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 159.5-14 chr17 53092250 53092407 + 2 NA Intergenic Intergenic 106823 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 256.5-3 chr1 174948215 174948433 + 2 NA intron (NR_121196, intron 2 of 5) AluJo|SINE|Alu 5937 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 189.5-17 chr3 96950246 96950408 + 2 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 135733 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 299.5-27 chr4 57323382 57323749 + 2 NA Intergenic Intergenic -102307 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 406-15 chr3 41486716 41487071 + 2 NA intron (NR_136342, intron 30 of 34) L1M3|LINE|L1 287388 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 283-40 chr6 145761740 145762074 + 2 NA intron (NR_038246, intron 1 of 2) intron (NR_038246, intron 1 of 2) -25884 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 359-18 chr17_KI270729v1_random 23465 23778 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 453-16 chr20 58314139 58314505 + 2 NA intron (NM_020673, intron 2 of 6) AluSx1|SINE|Alu 4607 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 201.5-29 chr8 54542374 54542515 + 2 NA Intergenic L1PA10|LINE|L1 -73652 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 179-2 chr10 86102441 86102590 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 162273 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 476-31 chr6 149655365 149655717 + 2 NA Intergenic AluSz|SINE|Alu -6737 NM_001204076 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 599-15 chr8 100376661 100377127 + 2 NA Intergenic Intergenic -5869 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 371.5-24 chr5 160675208 160675569 + 2 NA intron (NM_001366652, intron 5 of 24) intron (NM_001366652, intron 5 of 24) 10003 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 180-7 chr3 157852412 157852565 + 2 NA Intergenic L1M5|LINE|L1 253675 NM_006884 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 220-11 chr15 65001761 65001890 + 2 NA 3' UTR (NM_139242, exon 9 of 9) 3' UTR (NM_139242, exon 9 of 9) -11911 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 160-15 chr7 16939528 16939618 + 2 NA Intergenic Intergenic -57590 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 405-36 chr8 71518268 71518500 + 2 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 29320 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 236-31 chr7 9741712 9741875 + 2 NA Intergenic Intergenic 107523 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 249.5-18 chr20 62891258 62891420 + 2 NA intron (NM_001193370, intron 14 of 14) intron (NM_001193370, intron 14 of 14) -8436 NR_145839 109623463 NR_145839 SNORA117 - small nucleolar RNA, H/ACA box 117 snoRNA 560-19 chr6 52572072 52572424 + 2 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 4812 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 170-9 chr14 68355850 68355960 + 2 NA intron (NM_133509, intron 8 of 10) L1M5|LINE|L1 272882 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 585-6 chr2 58364995 58365317 + 2 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat 89279 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 552.5-22 chr9 3386415 3387000 + 2 NA intron (NM_134428, intron 3 of 17) intron (NM_134428, intron 3 of 17) 8889 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 413-23 chr20 58844916 58845303 + 2 NA intron (NR_002785, intron 2 of 4) intron (NR_002785, intron 2 of 4) 3489 NM_001309861 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 260.5-32 chr7 37798392 37798626 + 2 NA Intergenic Intergenic -50088 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 245-8 chr10 118850716 118850917 + 2 NA Intergenic Intergenic -95846 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 238-37 chr8 99418887 99419071 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 117751 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 230.5-37 chr4 150755546 150755684 + 2 NA intron (NM_001367550, intron 35 of 56) intron (NM_001367550, intron 35 of 56) 173464 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 262 chr1 106431451 106431602 + 2 NA Intergenic Intergenic -386713 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 225-3 chr1 237210419 237210556 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 168303 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 407.5-7 chr15 54069891 54070409 + 2 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 57502 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 333.5-9 chr18 52884184 52884355 + 2 NA intron (NM_005215, intron 2 of 28) L1MA2|LINE|L1 -352832 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 296.5 chr1 157482464 157482762 + 2 NA Intergenic L2|LINE|L2 69902 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 503-26 chr6 35874449 35874799 + 2 NA intron (NM_003137, intron 6 of 15) intron (NM_003137, intron 6 of 15) 46474 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 318-26 chr3 122424828 122425054 + 2 NA non-coding (NR_026698, exon 15 of 15) non-coding (NR_026698, exon 15 of 15) 8735 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 234-14 chr2 155865450 155865668 + 2 NA Intergenic Intergenic 389372 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 306-3 chr10 80532493 80532660 + 2 NA 3' UTR (NM_001351267, exon 11 of 11) 3' UTR (NM_001351267, exon 11 of 11) 3366 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 435.5-14 chr4 161910838 161911208 + 2 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -111710 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 272-41 chr8 130941561 130941792 + 2 NA intron (NM_001115, intron 4 of 17) intron (NM_001115, intron 4 of 17) 99233 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 196-18 chr6 63713501 63713622 + 2 NA exon (NM_015153, exon 15 of 15) exon (NM_015153, exon 15 of 15) 67035 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 285-19 chr20 43635973 43636223 + 2 NA intron (NM_001323578, intron 11 of 13) intron (NM_001323578, intron 11 of 13) -30921 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 326-35 chr7 50840002 50840265 + 2 NA Intergenic Intergenic -46680 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 393-3 chr11 7424284 7424655 + 2 NA intron (NM_175733, intron 6 of 6) intron (NM_175733, intron 6 of 6) 41366 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 289-32 chr3 192568397 192568629 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 53491 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 222.5-6 chr14 20657145 20657283 + 2 NA Intergenic Intergenic -15523 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 591-9 chr3 99306522 99306924 + 2 NA Intergenic Intergenic -331871 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 225-16 chr17 42444570 42444682 + 2 NA Intergenic AluJr|SINE|Alu -14252 NM_001130020 535 Hs.463074 NM_005177 ENSG00000033627 ATP6V0A1 ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 ATPase H+ transporting V0 subunit a1 protein-coding 287.5-4 chr10 100235367 100235583 + 2 NA intron (NM_001303404, intron 12 of 12) intron (NM_001303404, intron 12 of 12) 1827 NR_002954 677800 Hs.662165 NR_002954 ENSG00000212464 SNORA12 U108 small nucleolar RNA, H/ACA box 12 snoRNA 529.5-6 chr11 133856156 133856487 + 2 NA Intergenic L1MB7|LINE|L1 -10808 NM_174927 219938 Hs.97541 NM_174927 ENSG00000166118 SPATA19 CT132|SPAS1|spergen1 spermatogenesis associated 19 protein-coding 551-16 chr18 75973898 75974362 + 2 NA Intergenic Intergenic -148868 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 291-8 chr14 59343052 59343272 + 2 NA intron (NM_001270520, intron 16 of 24) intron (NM_001270520, intron 16 of 24) 79721 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 195.5-35 chrX 98555360 98555460 + 2 NA Intergenic Intergenic -990875 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 226-11 chr17 55997808 55997963 + 2 NA Intergenic AluJr|SINE|Alu -155590 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 531-18 chr2 116349997 116350326 + 2 NA Intergenic Intergenic 1006346 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 191.5-5 chr12 129386204 129386363 + 2 NA intron (NM_133448, intron 3 of 8) (ACTAAC)n|Simple_repeat|Simple_repeat 177682 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 348-9 chr12 108499551 108499882 + 2 NA Intergenic L2a|LINE|L2 -15561 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 349.5-13 chr16 64147445 64147816 + 2 NA Intergenic L1ME3B|LINE|L1 974433 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 318-33 chr5 79171214 79171648 + 2 NA Intergenic Intergenic 59622 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 766-3 chr11 11089951 11090504 + 2 NA Intergenic Intergenic 232010 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 626.5-8 chr7 91098641 91099044 + 2 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -165591 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 342.5-19 chr2 174721740 174721967 + 2 NA Intergenic Intergenic 2053 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 278.5-17 chr4 42539929 42540230 + 2 NA intron (NM_001105529, intron 19 of 35) L1MA4A|LINE|L1 117026 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 252.5-30 chr8 90193704 90193984 + 2 NA Intergenic Intergenic -27644 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 615-5 chr12 47000648 47001072 + 2 NA Intergenic Intergenic -78743 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 555-13 chr2 178042715 178043108 + 2 NA intron (NM_001077197, intron 2 of 20) MamGypsy2-LTR|LTR|Gypsy 29866 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 234-19 chr3 60416097 60416329 + 2 NA intron (NM_001320900, intron 6 of 9) L1ME3G|LINE|L1 201657 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 227-24 chr3 13191096 13191263 + 2 NA Intergenic Intergenic -117750 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 515.5-6 chr2 30055687 30056164 + 2 NA Intergenic Intergenic -91082 NM_016061 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 532-14 chr5 149303037 149303517 + 2 NA intron (NM_001323062, intron 5 of 17) intron (NM_001323062, intron 5 of 17) 31418 NM_152406 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 341-34 chr8 56760608 56761031 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -200996 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 418-9 chr14 29292934 29293185 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -507272 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 365-22 chr5 58392581 58392890 + 2 NA Intergenic Intergenic 67351 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 392-14 chr14 63239639 63239911 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 35332 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 307-27 chr3 129331738 129331926 + 2 NA Intergenic Intergenic -15546 NM_006026 8971 Hs.75307 NM_006026 ENSG00000184897 H1FX H1.10|H1X H1 histone family member X protein-coding 607-25 chr8 104146511 104147004 + 2 NA intron (NM_001348498, intron 19 of 24) AluJb|SINE|Alu -76578 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 288-23 chr2 158163408 158163764 + 2 NA Intergenic L1MB4|LINE|L1 -3064 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 216-15 chr20 6534531 6534670 + 2 NA Intergenic Intergenic 107868 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 218-26 chr5 122021062 122021278 + 2 NA intron (NM_152546, intron 6 of 7) Tigger15a|DNA|TcMar-Tigger 56004 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 628-13 chr6 95961258 95961734 + 2 NA Intergenic Intergenic -54478 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 399-23 chr20 57097675 57097970 + 2 NA Intergenic L1ME3Cz|LINE|L1 -115874 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 662.5-6 chr7 78258541 78259038 + 2 NA intron (NM_001301128, intron 9 of 20) L1ME3C|LINE|L1 -88453 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 333-38 chr7 114689804 114690107 + 2 NA non-coding (NR_033766, exon 20 of 20) non-coding (NR_033766, exon 20 of 20) 36610 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 432-16 chr2 107435013 107435252 + 2 NA Intergenic Intergenic -85607 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 438.5-13 chr8 104760201 104760735 + 2 NA Intergenic Intergenic -171444 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 265.5-35 chr6 35519962 35520138 + 2 NA Intergenic MIRb|SINE|MIR -7154 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 221.5-24 chr6 65420736 65420887 + 2 NA intron (NM_198283, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 119393 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 285-4 chr10 53608887 53609101 + 2 NA Intergenic Intergenic -837294 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 247-18 chr4 58359739 58359953 + 2 NA Intergenic MER52A|LTR|ERV1 176482 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 491-12 chr2 164783547 164783952 + 2 NA intron (NM_001365670, intron 2 of 13) AluJo|SINE|Alu -57000 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 369.5-6 chr13 113818412 113818726 + 2 NA intron (NR_044995, intron 1 of 4) CpG 2959 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 547.5-10 chr5 55049854 55050441 + 2 NA Intergenic L1MDa|LINE|L1 25891 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 247-12 chr2 226215292 226215587 + 2 NA Intergenic Intergenic 72645 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 299-13 chr14 55935560 55935724 + 2 NA Intergenic Intergenic -138968 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 268.5-15 chr20 17722271 17722424 + 2 NA intron (NM_001014977, intron 1 of 2) intron (NM_001014977, intron 1 of 2) 22399 NM_001014977 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 303-15 chr17 78482246 78482493 + 2 NA intron (NM_173628, intron 48 of 80) intron (NM_173628, intron 48 of 80) -2541 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 433-32 chr8 136116647 136116900 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -414025 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 524.5-12 chr4 124972747 124973157 + 2 NA Intergenic Intergenic -260220 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 180-5 chr2 60326193 60326358 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 56761 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 333-23 chr3 72310844 72311090 + 2 NA Intergenic Intergenic 135656 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 269.5-32 chr3 30149740 30150039 + 2 NA Intergenic L1MC4|LINE|L1 -215733 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 280.5-18 chr2 151377511 151377768 + 2 NA intron (NM_007115, intron 5 of 5) L1M5|LINE|L1 1732 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 336-37 chr3 117960634 117960944 + 2 NA Intergenic Intergenic -269864 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 335.5-6 chr12 5030185 5030476 + 2 NA Intergenic LTR36|LTR|ERV1 -13549 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 380-22 chr6 52264066 52264328 + 2 NA non-coding (NR_158965, exon 18 of 18) non-coding (NR_158965, exon 18 of 18) -19697 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 363-4 chr10 5129267 5129521 + 2 NA Intergenic L1PB2|LINE|L1 34980 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 680.5-3 chr2 149031041 149031752 + 2 NA Intergenic Intergenic -7071 NM_001317006 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 356.5-35 chr7 80492531 80492818 + 2 NA intron (NM_001102386, intron 2 of 7) L1ME4a|LINE|L1 19390 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 308-36 chr9 8621176 8621411 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 112653 NM_001040712 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 337.5 chr11 20916258 20916473 + 2 NA intron (NM_201551, intron 5 of 18) intron (NM_201551, intron 5 of 18) 246779 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 285-10 chr11 82744392 82744550 + 2 NA Intergenic Intergenic -10607 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 544-13 chr7 22832201 22832620 + 2 NA Intergenic AluJr4|SINE|Alu -9561 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 462.5-15 chr22 25189576 25189829 + 2 NA intron (NM_001145206, intron 9 of 10) (TGGA)n|Simple_repeat|Simple_repeat -10156 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 191-4 chr14 70221097 70221225 + 2 NA intron (NR_135825, intron 2 of 3) L1MB7|LINE|L1 26640 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 336-16 chr14 43261413 43261677 + 2 NA Intergenic Intergenic 1245738 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 391-19 chr3 115935269 115935622 + 2 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -30319 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 279-21 chr21 28188138 28188381 + 2 NA intron (NR_126012, intron 3 of 5) L1MA1|LINE|L1 40408 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 252.5-4 chr10 73407523 73407903 + 2 NA intron (NM_004034, intron 1 of 13) intron (NM_004034, intron 1 of 13) 6345 NM_004034 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 418-18 chr3 59185333 59185698 + 2 NA Intergenic Intergenic -135483 NM_001351534 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 476-8 chr10 71541956 71542359 + 2 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -30237 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 464.5-5 chr10 15740225 15740709 + 2 NA Intergenic Intergenic -20132 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 372-29 chr3 185041060 185041305 + 2 NA intron (NM_001009921, intron 45 of 46) AluSq2|SINE|Alu 111878 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 266-40 chr7 139363056 139363329 + 2 NA intron (NM_016019, intron 1 of 9) intron (NM_016019, intron 1 of 9) 3298 NM_016019 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 473.5-13 chr6 122836497 122837093 + 2 NA Intergenic AluSg7|SINE|Alu 47537 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 455.5-6 chr15 61884489 61884913 + 2 NA intron (NM_001018088, intron 67 of 81) Cheshire|DNA|hAT-Charlie 154783 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 270-9 chr15 46930433 46930654 + 2 NA Intergenic L1MC1|LINE|L1 -253546 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 511-6 chr10 74620993 74621484 + 2 NA intron (NM_001369124, intron 8 of 9) L1MA5A|LINE|L1 -91914 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 361.5-33 chrX 70425209 70425458 + 2 NA intron (NM_001171192, intron 2 of 16) intron (NM_001171192, intron 2 of 16) 2302 NM_017711 54857 Hs.438712 NM_017711 ENSG00000130055 GDPD2 GDE3|OBDPF glycerophosphodiester phosphodiesterase domain containing 2 protein-coding 324-21 chr2 174990418 174990687 + 2 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 14701 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 354-13 chr2 47017811 47018083 + 2 NA intron (NM_001288951, intron 11 of 20) (TA)n|Simple_repeat|Simple_repeat -76092 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 286-16 chr18 57542336 57542489 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 44290 NM_001371095 654.5-6 chr8 77626835 77627210 + 2 NA Intergenic Intergenic 176325 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 240-36 chr4 123009893 123010092 + 2 NA intron (NM_001317799, intron 10 of 10) intron (NM_001317799, intron 10 of 10) 86914 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 360-18 chr17 33162696 33162959 + 2 NA intron (NM_001094, intron 1 of 9) LTR67B|LTR|ERVL 130161 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 181.5-3 chr10 9197339 9197527 + 2 NA TTS (NR_120635) TTS (NR_120635) -78180 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 666-2 chr1 43369728 43370157 + 2 NA Intergenic AluSx3|SINE|Alu -1868 NM_001256401 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 710-4 chr12 48012650 48013164 + 2 NA Intergenic Intergenic -8431 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 270-30 chr7 106277896 106278112 + 2 NA intron (NM_005746, intron 1 of 10) intron (NM_005746, intron 1 of 10) 6979 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 230-18 chr2 41301883 41302118 + 2 NA Intergenic Intergenic -575555 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 318.5-29 chr5 154503716 154503968 + 2 NA Intergenic Intergenic -25615 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 570-2 chr1 196686881 196687321 + 2 NA intron (NM_001014975, intron 7 of 9) L3|LINE|CR1 35223 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 634-8 chr2 22069145 22069676 + 2 NA Intergenic L1MA2|LINE|L1 -358758 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 231.5-10 chr18 268952 269084 + 2 NA promoter-TSS (NM_005131) promoter-TSS (NM_005131) -971 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 391-16 chr3 34012495 34012815 + 2 NA Intergenic L1ME2|LINE|L1 214025 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 468-42 chr6 161282477 161282929 + 2 NA Intergenic MIRb|SINE|MIR -8642 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 208-13 chr2 172696599 172696730 + 2 NA Intergenic Intergenic -39181 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 332-6 chr13 78072448 78072701 + 2 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 17719 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 413.5-16 chr5 21617880 21618410 + 2 NA Intergenic MER4B|LTR|ERV1 158665 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 531-2 chr10 55233103 55233690 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -365646 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 294.5-7 chr10 98366278 98366464 + 2 NA Intergenic Intergenic 28936 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 390-25 chr5 141624855 141625384 + 2 NA non-coding (NR_149167, exon 13 of 13) non-coding (NR_149167, exon 13 of 13) -6119 NM_001314007 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 276-14 chr14 96814059 96814329 + 2 NA intron (NM_003384, intron 1 of 12) intron (NM_003384, intron 1 of 12) 16812 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 378.5-5 chr10 76398891 76399283 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -488957 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 250.5-16 chr18 22054029 22054160 + 2 NA Intergenic AluSq2|SINE|Alu 114874 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 380-5 chr15 59108724 59109049 + 2 NA intron (NM_004701, intron 3 of 8) intron (NM_004701, intron 3 of 8) 3740 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 253-15 chr21 28771310 28771475 + 2 NA Intergenic Intergenic 113975 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 204-6 chr10 16655254 16655406 + 2 NA intron (NM_152724, intron 7 of 7) MIRb|SINE|MIR -133451 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 307-8 chr12 1847895 1848146 + 2 NA intron (NM_172364, intron 23 of 37).2 L1MC5|LINE|L1 27455 NM_001039029 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 224.5-22 chr3 95210050 95210287 + 2 NA Intergenic L1MC3|LINE|L1 271905 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 282-4 chr1 90736131 90736369 + 2 NA Intergenic Intergenic -18948 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 551 chr1 111867687 111867986 + 2 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR -10931 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 148.5-16 chr20 48924771 48924882 + 2 NA intron (NM_006420, intron 1 of 38) MIR|SINE|MIR 3115 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 493-9 chr15 81040367 81040815 + 2 NA Intergenic Intergenic 39668 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 170-7 chr14 60577466 60577613 + 2 NA Intergenic Intergenic -61677 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 421-34 chr6 150431629 150432018 + 2 NA Intergenic Intergenic 62811 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 359.5-31 chr5 111185862 111186137 + 2 NA Intergenic Intergenic -37584 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 428-14 chr2 118782861 118783182 + 2 NA Intergenic Intergenic 65162 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 386-10 chr16 7733373 7733592 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron 400637 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 587-15 chr8 14901104 14901440 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -47762 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 309-22 chr2 226186970 226187157 + 2 NA Intergenic AluSx|SINE|Alu 44269 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 344.5-30 chr6 155533252 155533461 + 2 NA Intergenic L1MEd|LINE|L1 18512 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 212-23 chr5 57775094 57775206 + 2 NA Intergenic MIR|SINE|MIR 124012 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 577-4 chr16 19559944 19560371 + 2 NA intron (NM_001300743, intron 1 of 27) intron (NM_001300743, intron 1 of 27) 4454 NM_001300743 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 170-21 chr8 126159731 126159820 + 2 NA Intergenic (GTT)n|Simple_repeat|Simple_repeat -165720 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 370-29 chr6 39197463 39197719 + 2 NA intron (NM_003740, intron 1 of 4) intron (NM_003740, intron 1 of 4) 31884 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 609-12 chr3 72470384 72470933 + 2 NA Intergenic Intergenic -24035 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 350.5-6 chr16 26494973 26495303 + 2 NA Intergenic Intergenic 469901 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 721.5-2 chr12 58106300 58106906 + 2 NA Intergenic Intergenic 18711 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 594.5-8 chr7 77640504 77640841 + 2 NA TTS (NM_002835) TTS (NM_002835) 55593 NR_134254 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 296.5-31 chr6 147157948 147158276 + 2 NA promoter-TSS (NR_132442) promoter-TSS (NR_132442) -813 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 242.5-16 chr21 25023861 25024037 + 2 NA intron (NR_046198, intron 2 of 3) AluY|SINE|Alu 183399 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 450-21 chr8 43283965 43284267 + 2 NA Intergenic L1PA16|LINE|L1 -8326 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 227-9 chr11 38394015 38394205 + 2 NA Intergenic Intergenic 252246 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 283.5-13 chr14 78701074 78701394 + 2 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 297515 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 496-15 chr2 68954564 68954905 + 2 NA Intergenic MIR|SINE|MIR -1841 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 222.5-16 chr21 22318303 22318479 + 2 NA Intergenic Intergenic 219774 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 490-20 chr3 138154842 138155266 + 2 NA Intergenic L1MC5|LINE|L1 19867 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 561-2 chr1 152052121 152052788 + 2 NA Intergenic Intergenic -15450 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 224.5-17 chr2 46014049 46014275 + 2 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -283245 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 250-6 chr10 115027581 115027829 + 2 NA Intergenic Intergenic 33048 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 497-14 chr7 122552817 122553180 + 2 NA intron (NM_001167940, intron 8 of 29) L2c|LINE|L2 146119 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 465-20 chr12 111372456 111372745 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -3505 NM_144671 144717 Hs.173088 NM_144671 ENSG00000198324 PHETA1 FAM109A|IPIP27A|SES1 PH domain containing endocytic trafficking adaptor 1 protein-coding 189-7 chr15 40746995 40747138 + 2 NA intron (NM_001323894, intron 4 of 12) intron (NM_001323894, intron 4 of 12) 8188 NM_018145 55177 Hs.511067 NM_018145 ENSG00000137824 RMDN3 FAM82A2|FAM82C|RMD-3|RMD3|ptpip51 regulator of microtubule dynamics 3 protein-coding 336-18 chr14 70284084 70284414 + 2 NA Intergenic AluJb|SINE|Alu -36448 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 287.5-29 chr9 96774983 96775238 + 2 NA intron (NM_001314059, intron 2 of 5) AluSx1|SINE|Alu 2977 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 602-20 chr9 132704603 132705050 + 2 NA Intergenic MER101-int|LTR|ERV1 34362 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 592-18 chr9 128696667 128697032 + 2 NA TTS (NM_003011) TTS (NM_003011) -5654 NM_001317926 29941 Hs.300485 NM_013355 ENSG00000160447 PKN3 UTDP4-1 protein kinase N3 protein-coding 351-35 chr4 176504007 176504339 + 2 NA Intergenic L2|LINE|L2 184207 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 444.5-2 chr12 1617641 1618055 + 2 NA intron (NM_030775, intron 1 of 4) intron (NM_030775, intron 1 of 4) 792 NM_030775 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 397-28 chr5 133166313 133166779 + 2 NA Intergenic L1MB3|LINE|L1 114533 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 942-3 chr4 122204575 122205455 + 2 NA intron (NM_015312, intron 13 of 83) intron (NM_015312, intron 13 of 83) 34412 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 411-30 chr5 24242890 24243157 + 2 NA Intergenic MLT2C1|LTR|ERVL 291675 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 242.5-21 chr3 116616463 116616733 + 2 NA Intergenic Intergenic 64125 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 303-2 chr1 40899555 40899843 + 2 NA Intergenic Intergenic -37336 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 466-32 chr8 127977056 127977458 + 2 NA intron (NR_003367, intron 3 of 8) intron (NR_003367, intron 3 of 8) 16624 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 204-3 chr1 202656965 202657082 + 2 NA intron (NM_177402, intron 1 of 8) L3|LINE|CR1 -13570 NM_001136504 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 478.5 chr1 35101261 35101668 + 2 NA intron (NM_024772, intron 4 of 9) intron (NM_024772, intron 4 of 9) 22079 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 349-41 chr9 72809787 72810260 + 2 NA intron (NM_138691, intron 18 of 23) L2b|LINE|L2 64086 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 356.5-26 chr20 56746632 56746950 + 2 NA Intergenic Intergenic 117485 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 361-17 chr17 14627653 14627994 + 2 NA Intergenic LTR31|LTR|ERV1 324083 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 330-17 chr15 93689998 93690191 + 2 NA Intergenic Intergenic -166466 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 274-26 chr4 142098704 142098884 + 2 NA intron (NM_001331040, intron 23 of 25) L2a|LINE|L2 462211 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 391.5-43 chr9 71751199 71751597 + 2 NA intron (NM_013390, intron 1 of 23) MER5B|DNA|hAT-Charlie 17115 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 337.5-25 chr5 6604381 6604794 + 2 NA intron (NM_017755, intron 16 of 18) intron (NM_017755, intron 16 of 18) 21311 NR_024424 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 560-4 chr15 95339155 95339581 + 2 NA Intergenic Intergenic -12268 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 834-3 chr6 35210637 35211096 + 2 NA Intergenic MIR|SINE|MIR -3090 NM_001303136 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 309.5-26 chr8 124177082 124177327 + 2 NA Intergenic LTR65|LTR|ERV1 -5682 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 457-2 chr10 52890679 52891017 + 2 NA Intergenic Intergenic -119148 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 584.5-11 chr9 101468236 101468859 + 2 NA promoter-TSS (NR_121574) promoter-TSS (NR_121574) 108 NR_121573 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 282-18 chr2 232636409 232636582 + 2 NA intron (NM_025202, intron 1 of 3) intron (NM_025202, intron 1 of 3) 2891 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 299-30 chr7 48064784 48064944 + 2 NA Intergenic L1MC4|LINE|L1 -23739 NM_001362774 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 351.5-9 chr19 39687476 39687923 + 2 NA Intergenic L1M1|LINE|L1 8325 NR_034156 400696 Hs.456377 NM_207646 ENSG00000226025 LGALS17A - galectin 14 pseudogene pseudo 653.5-3 chr15 98971719 98972066 + 2 NA intron (NM_001167902, intron 2 of 4) L1MA4|LINE|L1 33764 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 421-37 chrX 85298275 85298632 + 2 NA intron (NM_001307940, intron 15 of 15) L1P4a|LINE|L1 54462 NM_021998 7552 Hs.326801 NM_021998 ENSG00000147180 ZNF711 CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1 zinc finger protein 711 protein-coding 313.5-10 chr12 38907707 38907985 + 2 NA Intergenic L1ME1|LINE|L1 -2255 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 433.5-10 chr17 30951397 30951696 + 2 NA intron (NR_144488, intron 6 of 9) AluJr4|SINE|Alu -19493 NM_001184992 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 303.5-4 chr1 215052153 215052324 + 2 NA intron (NM_001017424, intron 1 of 6) intron (NM_001017424, intron 1 of 6) -30499 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 538-6 chr16 13007236 13007534 + 2 NA intron (NM_001145204, intron 2 of 4) L2|LINE|L2 105787 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 273-23 chr3 4385343 4385591 + 2 NA intron (NM_001164674, intron 6 of 7) L1MD1|LINE|L1 81802 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 443-20 chr2 162646194 162646469 + 2 NA intron (NM_033272, intron 2 of 15) Plat_L3|LINE|CR1 -122605 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 321-13 chr2 78596586 78596812 + 2 NA Intergenic LTR33|LTR|ERVL 51168 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 282.5-15 chr15 56547634 56547775 + 2 NA Intergenic Intergenic -82567 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 358.5-26 chr5 151789422 151789769 + 2 NA intron (NM_198395, intron 2 of 11) intron (NM_198395, intron 2 of 11) -17419 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 316-38 chr6 57083165 57083468 + 2 NA Intergenic L1MB8|LINE|L1 -6714 NM_015555 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 508-16 chr22 21455911 21456314 + 2 NA Intergenic AluSx1|SINE|Alu -11058 NM_001207052 645426 Hs.376511 NM_001207052 ENSG00000206140 TMEM191C - transmembrane protein 191C protein-coding 299-33 chr8 133538202 133538638 + 2 NA intron (NM_003033, intron 2 of 8) AluSx1|SINE|Alu 33467 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 324.5-15 chr14 40812004 40812213 + 2 NA Intergenic L2a|LINE|L2 -142603 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 164-14 chr9 33331482 33331628 + 2 NA intron (NM_002504, intron 10 of 23) Tigger12|DNA|TcMar-Tigger 41039 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 349.5-3 chr11 12632050 12632385 + 2 NA Intergenic Intergenic -42204 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 324 chr1 35889959 35890156 + 2 NA intron (NM_001317122, intron 2 of 18) AluSx1|SINE|Alu 6848 NM_012199 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 661-8 chr6 50148696 50149214 + 2 NA Intergenic Intergenic -99026 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 617.5-9 chr19 49364874 49365244 + 2 NA intron (NM_001197301, intron 2 of 3) AluJb|SINE|Alu 1182 NM_001197302 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 478.5-13 chr3 129270710 129271396 + 2 NA intron (NM_016128, intron 18 of 23) intron (NM_016128, intron 18 of 23) -1093 NR_106884 102465496 NR_106884 ENSG00000278658 MIR6826 hsa-mir-6826 microRNA 6826 ncRNA 287-44 chr8 134070391 134070557 + 2 NA Intergenic L1MEd|LINE|L1 183978 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 138-4 chr14 81476969 81477073 + 2 NA exon (NM_005065, exon 21 of 21) exon (NM_005065, exon 21 of 21) -26864 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 797-3 chr20 55762046 55762671 + 2 NA Intergenic Intergenic 243161 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 352.5-7 chr10 92476481 92476765 + 2 NA intron (NR_136399, intron 16 of 25) FLAM_A|SINE|Alu 21138 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 382 chr1 95240224 95240532 + 2 NA intron (NM_001278248, intron 2 of 4) intron (NM_001278248, intron 2 of 4) 6168 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 423.5-30 chr8 82660932 82661361 + 2 NA Intergenic L1PA16|LINE|L1 -250958 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 194-22 chr7 51824640 51824775 + 2 NA Intergenic Intergenic -431451 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 396-29 chr6 163523499 163523827 + 2 NA intron (NM_206853, intron 3 of 6) intron (NM_206853, intron 3 of 6) 108945 NM_001301085 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 306-25 chr5 124760593 124760775 + 2 NA Intergenic MIR|SINE|MIR -15572 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 381-8 chr14 63310197 63310590 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 8542 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 206-7 chr12 53328468 53328621 + 2 NA exon (NM_001173467, exon 3 of 3) exon (NM_001173467, exon 3 of 3) -6934 NM_015665 8086 Hs.369144 NM_015665 ENSG00000094914 AAAS AAA|AAASb|ADRACALA|ADRACALIN|ALADIN|GL003 aladin WD repeat nucleoporin protein-coding 419-3 chr1 53406940 53407280 + 2 NA Intergenic L2c|LINE|L2 32910 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 206-11 chr2 212372156 212372321 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 54122 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 628-5 chr10 27046881 27047267 + 2 NA intron (NM_014915, intron 17 of 33) intron (NM_014915, intron 17 of 33) 53424 NM_014915 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 550-22 chr6 133539023 133539344 + 2 NA intron (NR_109982, intron 5 of 8) intron (NR_109982, intron 5 of 8) -281964 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 342-40 chr8 88020315 88020577 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -146431 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 440.5-9 chr14 39907092 39907434 + 2 NA Intergenic Intergenic -474763 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 491.5-7 chr14 33573998 33574395 + 2 NA intron (NM_001165893, intron 4 of 10) L2b|LINE|L2 -134741 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 699-6 chr14 101609903 101610629 + 2 NA Intergenic L1MC3|LINE|L1 48915 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 iodothyronine deiodinase 3 protein-coding 350-35 chr6 62554388 62554631 + 2 NA Intergenic L1PA13|LINE|L1 -268282 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 596.5-11 chr8 137146723 137147123 + 2 NA Intergenic Intergenic 266665 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 293.5-31 chr7 85839448 85839748 + 2 NA Intergenic Intergenic 418476 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 447.5-9 chr2 102621906 102622149 + 2 NA intron (NM_003048, intron 1 of 11) intron (NM_003048, intron 1 of 11) 2474 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 327-39 chr6 44972360 44972643 + 2 NA intron (NM_181356, intron 8 of 12) THE1C-int|LTR|ERVL-MaLR 225269 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 324.5-31 chr4 173687489 173687783 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 157178 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 320-34 chr8 81080115 81080325 + 2 NA intron (NM_018440, intron 1 of 8) Tigger20a|DNA|TcMar-Tigger 31848 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 199-5 chr14 61878917 61879064 + 2 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -48705 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 363-11 chr12 38886064 38886280 + 2 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 19419 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 285-33 chr9 75509919 75510160 + 2 NA Intergenic L1MC4|LINE|L1 -380605 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 257-39 chr5 118519746 118519991 + 2 NA intron (NR_104610, intron 3 of 9) MLT1K|LTR|ERVL-MaLR 42249 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 485-14 chr7 47111223 47111493 + 2 NA Intergenic L1MC4a|LINE|L1 353445 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 203.5-32 chr8 99403843 99403997 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 132810 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 310-47 chr9 132585216 132585466 + 2 NA intron (NM_020064, intron 1 of 2) intron (NM_020064, intron 1 of 2) 2735 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 318-16 chr18 24309109 24309385 + 2 NA intron (NM_080597, intron 13 of 27) intron (NM_080597, intron 13 of 27) 2259 NM_001242508 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 179-3 chr11 16367308 16367455 + 2 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -10835 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 354-8 chr14 34262882 34263084 + 2 NA Intergenic MIRc|SINE|MIR 199257 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 347.5-2 chr1 182297571 182297902 + 2 NA intron (NR_104175, intron 2 of 2) AluSx|SINE|Alu 16325 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 419-7 chr11 32996206 32996577 + 2 NA Intergenic L1PA11|LINE|L1 -19487 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 351-12 chr16 69008124 69008353 + 2 NA intron (NM_024562, intron 15 of 17) L1MC1|LINE|L1 -97415 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 298-12 chr19 5116295 5116590 + 2 NA intron (NM_015015, intron 10 of 22) HAL1|LINE|L1 147329 NM_001370094 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 378.5-15 chr2 31276132 31276367 + 2 NA Intergenic Intergenic 42097 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 487.5-6 chr1 247585012 247585571 + 2 NA Intergenic L1PA16|LINE|L1 -3069 NM_001001915 81470 Hs.690208 NM_001001915 ENSG00000177489 OR2G2 OR1-32 olfactory receptor family 2 subfamily G member 2 protein-coding 343-26 chr5 24865296 24865768 + 2 NA Intergenic AluSx1|SINE|Alu -24949 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 283-13 chr15 63904467 63904736 + 2 NA Intergenic Charlie30a|DNA|hAT-Charlie -23673 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 169-6 chr14 65602693 65602839 + 2 NA intron (NM_178156, intron 2 of 9) L1PB1|LINE|L1 131664 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 118 chr9 85324116 85324245 + 2 NA Intergenic L1ME1|LINE|L1 417849 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 256-22 chr4 7178345 7178537 + 2 NA Intergenic L1MB8|LINE|L1 -14097 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 469-27 chrX 67692324 67692616 + 2 NA intron (NM_001011645, intron 4 of 8) intron (NM_001011645, intron 4 of 8) 147847 NM_001348061 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 468-17 chr2 146026113 146026358 + 2 NA Intergenic Intergenic -560822 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 310-37 chr7 54715608 54715835 + 2 NA Intergenic LTR53-int|LTR|ERVL 43490 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 283-22 chr2 105921542 105921755 + 2 NA Intergenic L1PA16|LINE|L1 69801 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 218-29 chr5 172521505 172521657 + 2 NA Intergenic L1MEg|LINE|L1 37433 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 517-7 chr19 45567556 45568054 + 2 NA intron (NM_025136, intron 1 of 1) intron (NM_025136, intron 1 of 1) 16997 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 209.5-28 chr8 139945611 139945780 + 2 NA intron (NM_001160372, intron 19 of 22) L1MEb|LINE|L1 154840 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 477.5-19 chr5 25220241 25220711 + 2 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 29523 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 409.5-7 chr13 112686839 112687085 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -3367 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 548.5 chr1 110125265 110125583 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 12981 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 240.5-12 chr20 42376129 42376432 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -309203 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 242.5-23 chr4 54424686 54424816 + 2 NA Intergenic Intergenic 91859 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 218.5-13 chr16 79816020 79816138 + 2 NA Intergenic Intergenic 20830 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 119-4 chr9 106488892 106488951 + 2 NA Intergenic L1MEj|LINE|L1 -112007 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 706-5 chr7 26781138 26781569 + 2 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 76370 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 342.5-2 chr1 240871368 240871581 + 2 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -259319 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 561.5-5 chr17 40839046 40839726 + 2 NA Intergenic Intergenic -16772 NM_000421 3858 Hs.99936 NM_000421 ENSG00000186395 KRT10 BCIE|BIE|CK10|EHK|K10|KPP keratin 10 protein-coding 386-26 chr4 62211049 62211334 + 2 NA Intergenic Intergenic -49426 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 516 chr1 88628118 88628553 + 2 NA intron (NR_110682, intron 1 of 3) L2c|LINE|L2 -55809 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 328-12 chr14 20545195 20545409 + 2 NA Intergenic L1PB3|LINE|L1 15629 NM_001001673 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 306-2 chr1 191222937 191223135 + 2 NA intron (NR_146892, intron 1 of 1) intron (NR_146892, intron 1 of 1) 5462 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 554-9 chr13 23552718 23553058 + 2 NA Intergenic L2c|LINE|L2 -17482 NM_001204459 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 384.5-18 chr3 49379090 49379308 + 2 NA intron (NM_001664, intron 1 of 4) L1MB8|LINE|L1 -20599 NM_001329455 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 339.5-32 chr8 56798149 56798397 + 2 NA Intergenic MIR|SINE|MIR 195594 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 340-42 chr9 81993396 81993766 + 2 NA exon (NM_001001670, exon 4 of 4) exon (NM_001001670, exon 4 of 4) 4809 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 617-11 chr7 106181149 106181513 + 2 NA Intergenic Intergenic -68755 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 209-26 chr8 70487177 70487313 + 2 NA Intergenic Intergenic 16111 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 375-15 chr18 43782532 43782815 + 2 NA Intergenic Intergenic -505183 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 304-5 chr11 117674951 117675224 + 2 NA intron (NM_020693, intron 3 of 32) MIR|SINE|MIR 122129 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 221 chr1 9750172 9750302 + 2 NA intron (NM_001009566, intron 5 of 18) intron (NM_001009566, intron 5 of 18) 58770 NM_001350235 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 308-18 chr2 123098580 123098756 + 2 NA Intergenic Intergenic -25187 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 587 chr1 187502400 187502868 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 59006 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 451-14 chr15 61174981 61175393 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 54115 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 309-12 chr14 97102137 97102553 + 2 NA Intergenic Intergenic -52512 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 483-8 chr14 28634012 28634385 + 2 NA Intergenic L1P4a|LINE|L1 131121 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 385-8 chr13 43499947 43500183 + 2 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 51213 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 245.5-13 chr16 48405978 48406103 + 2 NA Intergenic MIRb|SINE|MIR -20627 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 293-4 chr11 120121156 120121440 + 2 NA intron (NM_001330382, intron 5 of 8) intron (NM_001330382, intron 5 of 8) 7555 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 615-17 chrUn_KI270411v1 869 1536 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 285-28 chr7 102104580 102104724 + 2 NA intron (NM_001913, intron 6 of 22) AluSx3|SINE|Alu -180489 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 422.5-5 chr16 50161545 50162027 + 2 NA intron (NM_001365324, intron 1 of 11) L1MD2|LINE|L1 8305 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 191-8 chr20 55133948 55134070 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -289034 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 285.5-26 chr6 27443406 27443602 + 2 NA intron (NR_144688, intron 5 of 8) L2a|LINE|L2 29394 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 288.5-13 chr12 23581909 23582139 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) 2562 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 423.5-28 chr7 54406050 54406535 + 2 NA Intergenic L1PA11|LINE|L1 75595 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 797 chr1 192617005 192617969 + 2 NA Intergenic Intergenic -18660 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 284-6 chr10 80367874 80368137 + 2 NA TTS (NM_001270042) TTS (NM_001270042) 11224 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 441-24 chr21 17874049 17874269 + 2 NA intron (NR_024354, intron 1 of 2) ERVL-B4-int|LTR|ERVL 11449 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 400.5-18 chr4 176320451 176320789 + 2 NA intron (NM_021928, intron 1 of 4) CpG 654 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 560.5 chr1 80581892 80582247 + 2 NA intron (NR_125940, intron 2 of 3) MIR|SINE|MIR 46314 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 410-27 chr5 120872997 120873350 + 2 NA Intergenic Intergenic 341709 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 521-20 chr8 81628973 81629385 + 2 NA intron (NR_146081, intron 1 of 7) L2c|LINE|L2 2098 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 431.5-24 chr8 105169833 105170102 + 2 NA Intergenic Intergenic -148471 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 430-14 chr16 81983220 81983522 + 2 NA Intergenic L1PA16|LINE|L1 28099 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 392-20 chr2 133770889 133771189 + 2 NA Intergenic Intergenic -202576 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 451.5-4 chr1 207998583 207999144 + 2 NA Intergenic L2a|LINE|L2 -87738 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 380.5-30 chrX 47756902 47757258 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 49889 NR_033924 392459 Hs.562045 NR_033924 ENSG00000187893 CXXC1P1 CXorf25|NCRNA00236 CXXC finger protein 1 pseudogene 1 pseudo 161.5-18 chr5 101257002 101257110 + 2 NA Intergenic L1MCc|LINE|L1 -353774 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 305-30 chr3 14735844 14736140 + 2 NA intron (NM_001184957, intron 12 of 16) L1MEg|LINE|L1 60851 NM_001184957 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 305 chr1 33456732 33456938 + 2 NA Intergenic Intergenic -15810 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 476-9 chr10 113278014 113278400 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 148936 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 474-35 chr8 3776979 3777371 + 2 NA intron (NM_033225, intron 5 of 69) (ATCT)n|Simple_repeat|Simple_repeat -1048724 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 332-31 chr5 59139615 59139829 + 2 NA intron (NM_001364603, intron 5 of 15) AluJb|SINE|Alu -100246 NM_001197222 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 391.5-7 chr12 45685130 45685464 + 2 NA Intergenic LTR16C|LTR|ERVL 42624 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 189 chr1 170068999 170069137 + 2 NA promoter-TSS (NM_001204517) promoter-TSS (NM_001204517) -153 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 493-19 chr3 104144628 104145069 + 2 NA Intergenic L2|LINE|L2 -620732 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 522-24 chr3 143705107 143705591 + 2 NA intron (NM_173653, intron 4 of 15) L1MA3|LINE|L1 143119 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 289-14 chr14 47334800 47335078 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 8307 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 234-7 chr11 75562226 75562438 + 2 NA promoter-TSS (NM_001235) promoter-TSS (NM_001235) 79 NM_001235 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 821 chr1 84705925 84706786 + 2 NA Intergenic L2|LINE|L2 -15887 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 283-35 chr5 7361518 7361679 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -13621 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 482.5-7 chr16 81259863 81260249 + 2 NA intron (NM_017429, intron 3 of 10) L1ME4b|LINE|L1 21367 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 383.5-20 chr6 37794432 37794784 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -25119 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 295-18 chr18 45158760 45159030 + 2 NA Intergenic Intergenic -9068 NM_001371319 337-24 chr5 174334374 174334696 + 2 NA Intergenic Intergenic -1819 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 392.5-2 chr10 62692430 62692795 + 2 NA Intergenic Intergenic -112108 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 448-27 chr5 170864787 170865227 + 2 NA intron (NM_022897, intron 1 of 27) MIRb|SINE|MIR 2989 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 491-11 chr15 89083269 89083566 + 2 NA Intergenic Intergenic -5039 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 462-21 chr2 191802528 191802952 + 2 NA intron (NR_157850, intron 2 of 4) intron (NR_157850, intron 2 of 4) 9900 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 318-22 chr2 176687821 176688216 + 2 NA Intergenic Intergenic 50264 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 480.5-9 chr5 102306472 102306814 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -10359 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 446-24 chr22 18130212 18130655 + 2 NA intron (NM_001193414, intron 4 of 4) AluJr|SINE|Alu 19624 NM_001193414 51807 Hs.137400 NM_018943 ENSG00000183785 TUBA8 CDCBM8|TUBAL2 tubulin alpha 8 protein-coding 280.5-7 chr12 116141714 116141948 + 2 NA intron (NM_015335, intron 2 of 30) L2a|LINE|L2 6823 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 302.5-10 chr12 112598507 112598781 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 23408 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 217.5 chr1 58315941 58316097 + 2 NA Intergenic MIRb|SINE|MIR -65472 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 404-26 chr21 33079095 33079472 + 2 NA Intergenic Intergenic 9142 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 334.5-10 chr15 27252175 27252485 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -91011 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 326.5-34 chr8 82933396 82933760 + 2 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 21474 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 355-23 chr20 12774172 12774369 + 2 NA Intergenic Intergenic 162693 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 506.5-10 chr5 28734741 28735038 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -191981 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 462-4 chr10 2252360 2252783 + 2 NA Intergenic Intergenic 62503 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 434-12 chr3 9815403 9815771 + 2 NA intron (NM_001198793, intron 6 of 11) intron (NM_001198793, intron 6 of 11) 5325 NR_037162 26140 Hs.726435 NM_015644 ENSG00000214021 TTLL3 HOTTL tubulin tyrosine ligase like 3 protein-coding 215-9 chr11 87000216 87000379 + 2 NA non-coding (NR_038905, exon 3 of 3) non-coding (NR_038905, exon 3 of 3) -37637 NM_022918 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 257-2 chr1 203724616 203724820 + 2 NA intron (NM_001001396, intron 19 of 21) intron (NM_001001396, intron 19 of 21) -4863 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 307-24 chr22 38595127 38595313 + 2 NA intron (NM_001013647, intron 15 of 16) intron (NM_001013647, intron 15 of 16) 24720 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 351.5-25 chr9 109050343 109050549 + 2 NA intron (NM_032012, intron 13 of 17) intron (NM_032012, intron 13 of 17) -4148 NR_029506 407036 NR_029506 ENSG00000207698 MIR32 MIRN32|hsa-mir-32|miR-32|miRNA32 microRNA 32 ncRNA 541.5-12 chr2 66345538 66346262 + 2 NA Intergenic LTR16A1|LTR|ERVL 12428 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 366-17 chr4 107644772 107645038 + 2 NA exon (NM_005443, exon 10 of 12) exon (NM_005443, exon 10 of 12) 75329 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 373-37 chr6 148873943 148874160 + 2 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 90633 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 337.5-19 chr20 24138508 24138800 + 2 NA Intergenic Intergenic -61113 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 371-10 chr18 9585863 9586078 + 2 NA intron (NR_052003, intron 5 of 19) L1M4b|LINE|L1 28589 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 291-3 chr10 19768933 19769292 + 2 NA Intergenic L2c|LINE|L2 -40562 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 426-17 chr2 36538803 36539145 + 2 NA intron (NM_016441, intron 14 of 16) L2a|LINE|L2 59194 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 345-4 chr1 116405670 116405860 + 2 NA TTS (NM_000701) TTS (NM_000701) 12794 NR_024126 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 569-19 chr7 26294940 26295430 + 2 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) 2154 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 428-7 chr11 101828320 101828586 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -86557 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 440-8 chr12 54050654 54051005 + 2 NA intron (NM_014620, intron 1 of 3) intron (NM_014620, intron 1 of 3) -3006 NM_153633 3221 Hs.549040 NM_014620 ENSG00000198353 HOXC4 HOX3|HOX3E|cp19 homeobox C4 protein-coding 400.5-11 chr2 126263681 126263947 + 2 NA Intergenic Intergenic -145829 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 479-13 chr2 174222385 174222683 + 2 NA intron (NM_001011708, intron 3 of 9) LTR101_Mam|LTR|ERVL 25998 NM_013341 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 307.5-37 chr7 49774158 49774360 + 2 NA intron (NM_198570, intron 1 of 3) CpG 621 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 422-34 chrX 95424169 95424572 + 2 NA Intergenic L1MEc|LINE|L1 -361144 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 224.5-27 chr5 94929397 94929549 + 2 NA intron (NM_001002796, intron 6 of 22) intron (NM_001002796, intron 6 of 22) 152393 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 567 chr1 76639006 76639334 + 2 NA Intergenic Intergenic 140097 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 219-14 chr13 113508093 113508238 + 2 NA intron (NM_001349746, intron 6 of 10) MIR3|SINE|MIR 17144 NM_001349741 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 370-20 chr20 124144 124418 + 2 NA Intergenic L1MDa|LINE|L1 -18309 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 429-25 chr3 181028195 181028460 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -28353 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 658-7 chr2 233273656 233274054 + 2 NA intron (NM_030803, intron 8 of 17).2 intron (NM_030803, intron 8 of 17).2 -1871 NR_003008 677775 Hs.663619 NR_003008 ENSG00000252010 SCARNA5 U87 small Cajal body-specific RNA 5 ncRNA 412.5-9 chr13 72110097 72110448 + 2 NA Intergenic Intergenic -243068 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 477.5-18 chr4 8185096 8185428 + 2 NA Intergenic AluSq2|SINE|Alu -14028 NM_001318480 54436 Hs.479116 NM_018986 ENSG00000125089 SH3TC1 - SH3 domain and tetratricopeptide repeats 1 protein-coding 521-11 chr4 30636760 30637053 + 2 NA Intergenic L2a|LINE|L2 -83463 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 422.5-19 chr6 142249838 142250086 + 2 NA Intergenic Intergenic -51957 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 294.5-5 chr1 174071074 174071365 + 2 NA Intergenic Intergenic -78147 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 392.5-4 chr10 72119950 72120482 + 2 NA intron (NM_001369103, intron 8 of 9) AluSx1|SINE|Alu -31184 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 267-28 chr3 56897426 56897731 + 2 NA intron (NM_001128615, intron 3 of 12) AluSc|SINE|Alu 18858 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 371-24 chr5 16451723 16452013 + 2 NA intron (NM_033414, intron 5 of 5) intron (NM_033414, intron 5 of 5) -10766 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 385-17 chr2 8177602 8177998 + 2 NA intron (NR_034135, intron 7 of 8) L1MD1|LINE|L1 150619 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 221-18 chr4 114844939 114845105 + 2 NA intron (NM_022569, intron 10 of 13) intron (NM_022569, intron 10 of 13) 188263 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 695.5-2 chr10 69340170 69340574 + 2 NA intron (NM_001322367, intron 1 of 16) AluSx|SINE|Alu 21525 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 451.5-9 chr14 49996842 49997195 + 2 NA intron (NR_126498, intron 1 of 3) AluSx|SINE|Alu -3884 NR_126499 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 465.5-7 chr15 63579497 63579806 + 2 NA intron (NM_001256702, intron 10 of 13) L1ME4b|LINE|L1 -17736 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 153-10 chr4 102354627 102354774 + 2 NA Intergenic Intergenic -9218 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 469-23 chr5 170399080 170399500 + 2 NA intron (NR_109899, intron 1 of 2) intron (NR_109899, intron 1 of 2) 9797 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 187-12 chr2 61769603 61769747 + 2 NA Intergenic L1MC2|LINE|L1 84385 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 356-23 chr2 182579175 182579375 + 2 NA Intergenic MIR|SINE|MIR -56430 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 346-11 chr11 81884614 81884980 + 2 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) 6039 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 536-2 chr1 63422169 63422488 + 2 NA intron (NM_013339, intron 12 of 14) (TATATA)n|Simple_repeat|Simple_repeat 54701 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 282-3 chr1 26758397 26758598 + 2 NA intron (NM_139135, intron 4 of 19) AluJb|SINE|Alu -29466 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 395.5-28 chr5 78037424 78037780 + 2 NA intron (NM_003664, intron 23 of 26) intron (NM_003664, intron 23 of 26) 79355 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 374-27 chr5 12440666 12441026 + 2 NA Intergenic AluJo|SINE|Alu -134011 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 363-13 chr14 20147907 20148093 + 2 NA Intergenic L1MEg|LINE|L1 4264 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 303-10 chr14 20270004 20270256 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 27338 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 279-18 chr2 190624557 190624782 + 2 NA Intergenic L1MA4|LINE|L1 -24226 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 445 chr10 14324968 14325222 + 2 NA intron (NR_134578, intron 2 of 3) MIRc|SINE|MIR 5789 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 507-18 chr3 15204674 15205064 + 2 NA intron (NR_027927, intron 1 of 4) intron (NR_027927, intron 1 of 4) 1090 NR_027927 344875 Hs.722756 NR_027927 ENSG00000230524 COL6A4P1 COL6A4|COL6A4P|DIVA|DVWA|VWA6 collagen type VI alpha 4 pseudogene 1 pseudo 238-40 chr8 132483477 132483646 + 2 NA Intergenic Intergenic -2466 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 408-40 chr7 85937582 85937818 + 2 NA Intergenic AluSx|SINE|Alu 516578 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 359-38 chr7 158793095 158793388 + 2 NA intron (NM_020728, intron 4 of 21) L1MB3|LINE|L1 36268 NM_001367773 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 473.5-12 chr5 73038306 73038621 + 2 NA intron (NM_001146032, intron 9 of 24) intron (NM_001146032, intron 9 of 24) -82112 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 513-18 chr21 28629775 28630117 + 2 NA Intergenic (TTTTT)n|Simple_repeat|Simple_repeat 90628 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 480-7 chr13 112047324 112047701 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -19637 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 419-8 chr11 35310437 35310860 + 2 NA intron (NM_001252652, intron 5 of 11) intron (NM_001252652, intron 5 of 11) 108910 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 402-24 chr4 44549530 44549929 + 2 NA Intergenic AluY|SINE|Alu -100920 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 728-8 chr7 30132815 30133538 + 2 NA Intergenic Intergenic -1810 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 393-5 chr11 32788969 32789315 + 2 NA intron (NM_001008391, intron 1 of 17) intron (NM_001008391, intron 1 of 17) 5516 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 287-6 chr10 21771930 21772110 + 2 NA intron (NM_022365, intron 9 of 11) AluJr|SINE|Alu 231710 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 617.5-7 chr14 53822859 53823272 + 2 NA Intergenic L1MEd|LINE|L1 125419 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 477 chr10 43778447 43778851 + 2 NA non-coding (NR_134483, exon 1 of 2) non-coding (NR_134483, exon 1 of 2) 176 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 531-27 chr4 126432775 126433144 + 2 NA Intergenic Intergenic 925700 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 346.5-31 chr8 87065739 87065996 + 2 NA intron (NM_173538, intron 4 of 10) MIR|SINE|MIR 199452 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 332-2 chr10 77446803 77446994 + 2 NA intron (NM_001271519, intron 1 of 28) L2c|LINE|L2 96026 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 648.5-5 chr6 27550900 27551284 + 2 NA Intergenic HAL1|LINE|L1 -77974 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 418-22 chr5 147560786 147561066 + 2 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 932 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 149-13 chr9 99914848 99914947 + 2 NA intron (NM_017919, intron 1 of 7) L1ME4a|LINE|L1 8243 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 460-23 chr8 130461132 130461403 + 2 NA Intergenic L1MA4A|LINE|L1 -17593 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 184-2 chr11 115904900 115905093 + 2 NA Intergenic L2a|LINE|L2 -144796 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 343.5-28 chr4 142113116 142113532 + 2 NA intron (NM_001331040, intron 21 of 25) intron (NM_001331040, intron 21 of 25) 476741 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 403-32 chr3 164776804 164777258 + 2 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 54449 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 254-22 chr3 7758171 7758390 + 2 NA Intergenic Intergenic -222996 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 250.5-14 chr15 88220185 88220402 + 2 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -14319 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 457.5-32 chr9 119181675 119182255 + 2 NA intron (NM_014618, intron 7 of 7) MIRb|SINE|MIR 187470 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 492-20 chr20 3160479 3160905 + 2 NA promoter-TSS (NM_014948) promoter-TSS (NM_014948) -827 NM_021826 60493 Hs.741168 NM_021826 ENSG00000215251 FASTKD5 dJ1187M17.5 FAST kinase domains 5 protein-coding 303-30 chr7 67685450 67685749 + 2 NA Intergenic Intergenic -334654 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 367-17 chr2 40703802 40704155 + 2 NA Intergenic Intergenic -191543 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 230.5-2 chr1 160986914 160987109 + 2 NA Intergenic LTR29|LTR|ERV1 -32202 NM_080878 142683 Hs.385631 NM_080878 ENSG00000158764 ITLN2 HL-2|HL2 intelectin 2 protein-coding 192.5-11 chr15 53289205 53289335 + 2 NA Intergenic L2c|LINE|L2 172905 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 161-4 chr10 109787937 109788109 + 2 NA Intergenic L1MA6|LINE|L1 135223 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 532.5-20 chr8 92677614 92677965 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -22295 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 788-5 chr11 131429657 131430265 + 2 NA intron (NM_001352003, intron 1 of 8) L2c|LINE|L2 59346 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 451-13 chr12 61234255 61234499 + 2 NA Intergenic L1MA1|LINE|L1 958462 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 443-5 chr1 218232408 218232803 + 2 NA Intergenic FLAM_C|SINE|Alu -52688 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 620-15 chr7 29103903 29104347 + 2 NA intron (NM_001371268, intron 3 of 9) (AC)n|Simple_repeat|Simple_repeat -20908 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 555-7 chr15 58159977 58160630 + 2 NA intron (NM_020980, intron 1 of 5) L1MA4|LINE|L1 21922 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 666-4 chr11 12705681 12706263 + 2 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 31551 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 298-4 chr10 18769243 18769510 + 2 NA Intergenic L1MB3|LINE|L1 109945 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 709-4 chr14 66745645 66746186 + 2 NA intron (NM_001024218, intron 2 of 21) L1ME1|LINE|L1 238508 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 327-8 chr11 46921939 46922179 + 2 NA Intergenic FAM|SINE|Alu -3509 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 474-25 chr5 25737691 25737971 + 2 NA Intergenic Intergenic 546878 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 583-18 chr8 144168787 144169337 + 2 NA intron (NM_001099281, intron 3 of 11) intron (NM_001099281, intron 3 of 11) 20417 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 390.5-11 chr18 61764177 61764700 + 2 NA Intergenic Intergenic 16262 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 325-16 chr3 47396975 47397243 + 2 NA intron (NM_001304482, intron 2 of 23) Tigger1|DNA|TcMar-Tigger 16088 NM_001304482 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 314-5 chr11 35010939 35011182 + 2 NA Intergenic Intergenic 69223 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 501-26 chr9 27381302 27381631 + 2 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -84316 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 227-30 chr5 155366062 155366235 + 2 NA Intergenic Intergenic 352393 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 461-15 chr20 21546509 21546872 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -23334 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 635.5-3 chr11 85482919 85483297 + 2 NA intron (NM_001142699, intron 3 of 27) L1M3e|LINE|L1 144162 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 522.5-9 chr22 28456097 28456417 + 2 NA intron (NM_001145418, intron 2 of 22) L1MB7|LINE|L1 -3612 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 276-29 chr21 28986860 28987107 + 2 NA intron (NM_015565, intron 1 of 29) intron (NM_015565, intron 1 of 29) 5894 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 470.5-15 chr8 137502750 137503087 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -89330 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 453-26 chr6 159042956 159043340 + 2 NA promoter-TSS (NM_001278733) promoter-TSS (NM_001278733) -795 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 593.5-9 chr5 9923179 9923797 + 2 NA Intergenic Intergenic -19664 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 216-22 chr4 172048000 172048240 + 2 NA intron (NM_001034845, intron 2 of 12) L2c|LINE|L2 -234513 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 260-11 chr16 7833136 7833309 + 2 NA Intergenic L1ME3|LINE|L1 500377 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 396.5-19 chr20 22782498 22782818 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -97314 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 208-7 chr14 76063994 76064163 + 2 NA intron (NM_001102564, intron 5 of 8) intron (NM_001102564, intron 5 of 8) 78315 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 263-7 chr12 72383910 72384118 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -110505 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 201-23 chr7 35472422 35472579 + 2 NA Intergenic L1M5|LINE|L1 158645 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 674-9 chr8 77121591 77122166 + 2 NA Intergenic Intergenic -120834 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 346-29 chr4 162251223 162251423 + 2 NA Intergenic L1ME2|LINE|L1 -87289 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 377-12 chr17 72352644 72352954 + 2 NA intron (NR_135222, intron 1 of 3) MIRc|SINE|MIR 9988 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 245-25 chr3 34623765 34623907 + 2 NA Intergenic L1MB4|LINE|L1 770187 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 547.5-13 chr7 17367253 17367852 + 2 NA Intergenic Intergenic -7365 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 261-24 chr5 177270908 177271101 + 2 NA intron (NM_172349, intron 17 of 23) intron (NM_172349, intron 17 of 23) 32715 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 288-9 chr13 80145382 80145693 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 134460 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 348-7 chr11 113680268 113680590 + 2 NA Intergenic MER115|DNA|hAT-Tip100 25879 NM_001288752 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 458-9 chr12 55634091 55634461 + 2 NA Intergenic Intergenic -2616 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 251-16 chr2 46960609 46960823 + 2 NA intron (NM_001288951, intron 3 of 20) intron (NM_001288951, intron 3 of 20) -18861 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 496-21 chr5 120041245 120041640 + 2 NA Intergenic L1PA13|LINE|L1 411883 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 444.5-7 chr2 184647186 184647515 + 2 NA intron (NM_194250, intron 1 of 3) L1PA16|LINE|L1 48821 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 336-35 chr3 45004823 45005090 + 2 NA intron (NR_023353, intron 3 of 6) L1ME3A|LINE|L1 -21347 NM_003278 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 352-35 chr6 40604736 40605203 + 2 NA Intergenic L2|LINE|L2 -17605 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 358.5-2 chr1 112608486 112608922 + 2 NA intron (NM_017744, intron 3 of 14) intron (NM_017744, intron 3 of 14) 10437 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 219-36 chr8 55226474 55226642 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 124530 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 190-2 chr1 238977323 238977519 + 2 NA Intergenic L1ME3F|LINE|L1 -409147 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 287-29 chr4 28571276 28571639 + 2 NA Intergenic Intergenic -248125 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 355-7 chr12 16751909 16752122 + 2 NA Intergenic Intergenic -143801 NR_045012 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 219-22 chr20 16157795 16157999 + 2 NA Intergenic Intergenic -172015 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 354-16 chr2 101509586 101509792 + 2 NA Intergenic Intergenic -34577 NM_001367509 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 496-9 chr18 76093619 76093983 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -29197 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 413-16 chr2 15044679 15045079 + 2 NA Intergenic Intergenic 412162 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 257-8 chr12 20845960 20846124 + 2 NA intron (NM_001349920, intron 1 of 13) L1PB|LINE|L1 23494 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 225-10 chr13 94265677 94265855 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -77775 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 342-31 chr6 45727368 45727658 + 2 NA Intergenic Intergenic 210084 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 296-24 chr3 157304576 157304806 + 2 NA intron (NM_001167911, intron 10 of 12) intron (NM_001167911, intron 10 of 12) -132159 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 323.5-14 chr19 33909102 33909359 + 2 NA Intergenic AluJr|SINE|Alu 112360 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 424.5-13 chr3 419992 420287 + 2 NA Intergenic Intergenic -34344 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 395-38 chr8 129467095 129467359 + 2 NA intron (NR_130920, intron 1 of 3) L1PB4|LINE|L1 16915 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 230-3 chr10 30441809 30441980 + 2 NA intron (NM_001244134, intron 2 of 7) intron (NM_001244134, intron 2 of 7) 7248 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 185-11 chr9 16373659 16373829 + 2 NA Intergenic Intergenic -97431 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 234.5-32 chr8 118650166 118650297 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -28268 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 328 chr1 52295153 52295401 + 2 NA intron (NM_007324, intron 10 of 17) intron (NM_007324, intron 10 of 17) 70928 NM_001330585 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 245.5-2 chr1 113607916 113608062 + 2 NA intron (NM_001142782, intron 6 of 20) L2c|LINE|L2 151166 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 352-8 chr15 88074792 88075102 + 2 NA intron (NM_001007156, intron 13 of 15) MIRb|SINE|MIR -128679 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 276-13 chr13 39872707 39872919 + 2 NA Intergenic Intergenic -208678 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 331-22 chr15 101008392 101008704 + 2 NA intron (NM_024652, intron 6 of 33) CpG 89191 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 403.5-9 chr15 86258928 86259308 + 2 NA intron (NM_152336, intron 9 of 24) MER20|DNA|hAT-Charlie 57850 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 344-6 chr10 43334350 43334576 + 2 NA Intergenic L1MA1|LINE|L1 -37173 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 312-27 chr5 43899882 43900295 + 2 NA Intergenic Intergenic -296858 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 375-18 chr20 45621129 45621335 + 2 NA intron (NM_147198, intron 1 of 4) L1MEh|LINE|L1 -8507 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 333-32 chr5 51036093 51036408 + 2 NA Intergenic Intergenic -66063 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 305-27 chr21 28446828 28447197 + 2 NA Intergenic Intergenic -92306 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 401-32 chr8 18254023 18254328 + 2 NA Intergenic L1MB2|LINE|L1 32507 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 400.5-25 chr7 117866126 117866386 + 2 NA intron (NM_001363351, intron 1 of 22) intron (NM_001363351, intron 1 of 22) 5964 NM_001363349 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 415-22 chr21 19454980 19455295 + 2 NA Intergenic Intergenic 444618 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 499-7 chr2 61389475 61389887 + 2 NA intron (NM_014709, intron 5 of 79) intron (NM_014709, intron 5 of 79) 27696 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 337-34 chrX 55424105 55424394 + 2 NA Intergenic L1PA10|LINE|L1 -27246 NR_130469 100847061 NR_130469 ENSG00000266328 MIR4536-2 - microRNA 4536-2 ncRNA 213.5-10 chr12 40496441 40496555 + 2 NA intron (NM_173600, intron 59 of 173) intron (NM_173600, intron 59 of 173) 103104 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 357-21 chr2 72510260 72510613 + 2 NA intron (NR_135774, intron 11 of 19) L1M5|LINE|L1 315597 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 214-10 chr2 100921412 100921587 + 2 NA intron (NM_002518, intron 2 of 20) intron (NM_002518, intron 2 of 20) 55662 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 227.5-35 chr9 104046917 104047042 + 2 NA Intergenic L1MA5|LINE|L1 45495 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 411.5-24 chr5 60071640 60071885 + 2 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -178036 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 234.5-7 chr11 130545124 130545424 + 2 NA Intergenic AluJr4|SINE|Alu 96300 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 323-15 chr19 10318891 10319185 + 2 NA intron (NM_001366174, intron 11 of 13) AluJr|SINE|Alu -3023 NM_001031734 112812 Hs.654865 NM_080665 ENSG00000267673 FDX2 FDX1L|MEOAL ferredoxin 2 protein-coding 391.5-44 chr9 134713943 134714180 + 2 NA intron (NM_001278074, intron 4 of 65) intron (NM_001278074, intron 4 of 65) -61218 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 189-15 chr2 49880012 49880178 + 2 NA Intergenic L1MEc|LINE|L1 94108 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 371-11 chr2 13294604 13294941 + 2 NA Intergenic Intergenic -287759 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 383-29 chr5 36936731 36937030 + 2 NA intron (NM_015384, intron 1 of 45) MIRb|SINE|MIR 60111 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 362-19 chr2 89795605 89795935 + 2 NA Intergenic Intergenic -157863 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 464-26 chr7 50423138 50423445 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 27059 NM_001346561 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 241-4 chr10 10229165 10229405 + 2 NA Intergenic Intergenic 170563 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 402.5-22 chr4 39629543 39629760 + 2 NA intron (NM_001317896, intron 1 of 5) AluJb|SINE|Alu -2530 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 427-12 chr14 64238601 64239009 + 2 NA intron (NM_001271877, intron 4 of 5) intron (NM_001271877, intron 4 of 5) 22851 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 291-16 chr22 35011029 35011211 + 2 NA Intergenic Intergenic -13204 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 530 chr1 23477603 23478110 + 2 NA intron (NM_001143778, intron 1 of 23).2 FRAM|SINE|Alu 6323 NM_017707 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 506-25 chr6 137542577 137543070 + 2 NA Intergenic L1MB2|LINE|L1 -48429 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 504.5-6 chr4 73484587 73485118 + 2 NA intron (NM_001133, intron 3 of 14) intron (NM_001133, intron 3 of 14) 3107 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 539.5-18 chr5 78475835 78476293 + 2 NA non-coding (NR_110885, exon 8 of 8) non-coding (NR_110885, exon 8 of 8) 115447 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 542.5-18 chr3 68094914 68095347 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 90883 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 222.5-8 chr17 10909912 10910064 + 2 NA Intergenic L1ME2|LINE|L1 -71901 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 186-20 chr4 54294012 54294174 + 2 NA intron (NM_001347829, intron 22 of 22) intron (NM_001347829, intron 22 of 22) -38799 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 311-11 chr17 20179365 20179573 + 2 NA intron (NM_001033554, intron 1 of 5) MLT1N2|LTR|ERVL-MaLR 23397 NM_001033555 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 318-17 chr18 37233373 37233653 + 2 NA Intergenic Intergenic -40947 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 322.5-11 chr18 42232432 42232935 + 2 NA intron (NR_046454, intron 3 of 6) intron (NR_046454, intron 3 of 6) 46015 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 409.5-30 chr8 126429499 126429755 + 2 NA Intergenic Intergenic 104132 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 444-21 chr4 40970642 40970999 + 2 NA intron (NM_004307, intron 6 of 17) MER81|DNA|hAT-Blackjack -113628 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 660-6 chr14 103481013 103481386 + 2 NA intron (NM_001128920, intron 14 of 15) intron (NM_001128920, intron 14 of 15) 41631 NM_001823 1152 Hs.173724 NM_001823 ENSG00000166165 CKB B-CK|BCK|CKBB|CPK-B|HEL-211|HEL-S-29 creatine kinase B protein-coding 209-17 chr20 31054287 31054422 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203310 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 277-43 chr6 152951862 152952096 + 2 NA Intergenic Intergenic 31062 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 297.5-18 chr2 53071078 53071291 + 2 NA Intergenic Intergenic -368569 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 454-11 chr17 69952903 69953286 + 2 NA Intergenic AluSc|SINE|Alu -8613 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 295-25 chr2 178722082 178722253 + 2 NA intron (NM_001256850, intron 75 of 312) intron (NM_001256850, intron 75 of 312) -54759 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 426-5 chr11 72902956 72903351 + 2 NA intron (NM_014824, intron 9 of 19) intron (NM_014824, intron 9 of 19) 88742 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 477-24 chr8 49117444 49117807 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 45281 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 212.5-8 chr11 80942317 80942446 + 2 NA Intergenic Intergenic -179578 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 636-13 chr2 99070284 99070713 + 2 NA intron (NR_146001, intron 13 of 18) intron (NR_146001, intron 13 of 18) 70682 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 469-16 chr2 157699836 157700156 + 2 NA Intergenic L1MA4A|LINE|L1 -71132 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 304.5-27 chr2 221468682 221468917 + 2 NA intron (NM_001363748, intron 5 of 17) intron (NM_001363748, intron 5 of 17) 103505 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 312-20 chr4 39906474 39906794 + 2 NA intron (NM_001100399, intron 11 of 32) intron (NM_001100399, intron 11 of 32) 71277 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 328-29 chr5 150119401 150119613 + 2 NA exon (NM_001355017, exon 20 of 23) exon (NM_001355017, exon 20 of 23) -6135 NM_005211 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 458-15 chr2 36051490 36051876 + 2 NA Intergenic L1PA15|LINE|L1 303887 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 473-15 chr3 103431663 103431970 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 92300 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 250-38 chr7 3674366 3674570 + 2 NA intron (NM_152744, intron 4 of 44) L2|LINE|L2 373216 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 308-4 chr10 51739810 51740051 + 2 NA intron (NM_001098512, intron 3 of 17) AluJb|SINE|Alu -40335 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 359-7 chr10 50454240 50454483 + 2 NA intron (NM_147156, intron 5 of 10) intron (NM_147156, intron 5 of 10) 169595 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 483-24 chr5 81808907 81809279 + 2 NA Intergenic L1MA5A|LINE|L1 -57840 NM_012446 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 514-21 chr8 66750374 66750787 + 2 NA intron (NM_001033578, intron 1 of 16) AluSc8|SINE|Alu 17454 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 128.5-22 chr4 81566998 81567069 + 2 NA Intergenic L1ME4b|LINE|L1 -95126 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 324-7 chr10 105937189 105937396 + 2 NA Intergenic L1MA8|LINE|L1 -116959 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 255-10 chr2 22613535 22613728 + 2 NA Intergenic Intergenic 77152 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 266-31 chr3 133457414 133457554 + 2 NA intron (NR_135276, intron 1 of 4) L1ME4b|LINE|L1 -1708 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 183-5 chr10 106565670 106565814 + 2 NA Intergenic Intergenic 425577 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 452-29 chr7 40151903 40152286 + 2 NA intron (NM_024728, intron 1 of 14) LTR8|LTR|ERV1 17118 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 688.5-4 chr2 16355432 16355886 + 2 NA Intergenic AluSg|SINE|Alu 305232 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 406-8 chr17 69971130 69971366 + 2 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 9541 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 308-7 chr13 89186414 89186570 + 2 NA Intergenic Intergenic -48799 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 199.5-11 chr15 70457478 70457710 + 2 NA Intergenic L1ME3G|LINE|L1 48334 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 292-16 chr18 65879185 65879495 + 2 NA intron (NM_001362438, intron 11 of 11) intron (NM_001362438, intron 11 of 11) 128328 NM_001317214 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 321-12 chr15 72468581 72468811 + 2 NA intron (NR_135678, intron 1 of 3) intron (NR_135678, intron 1 of 3) 5543 NR_135678 105370888 Hs.540241 NR_135678 ENSG00000261423 TMEM202-AS1 - TMEM202 antisense RNA 1 ncRNA 290-23 chr3 143885804 143885957 + 2 NA Intergenic Intergenic -37412 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 450.5-18 chr7 79765254 79765569 + 2 NA Intergenic Intergenic 311451 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 359.5-28 chr4 113388590 113388862 + 2 NA Intergenic Intergenic 95887 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 295-40 chr6 38125786 38125999 + 2 NA intron (NM_021943, intron 5 of 5) intron (NM_021943, intron 5 of 5) 306165 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 628.5-2 chr10 127903430 127904022 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -3377 NM_006504 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 213.5-28 chr5 63812510 63812719 + 2 NA Intergenic Intergenic 149678 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 604-14 chr21 27636893 27637332 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -85267 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 623-5 chr2 144434171 144434515 + 2 NA intron (NM_001171653, intron 2 of 8) L2c|LINE|L2 -85271 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 277-39 chr5 166410591 166410748 + 2 NA Intergenic Intergenic 515701 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 296.5-5 chr10 5609965 5610315 + 2 NA Intergenic Intergenic -14022 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 369.5-25 chr8 84317138 84317624 + 2 NA intron (NM_001354320, intron 2 of 9) MLT1J|LTR|ERVL-MaLR -98103 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 461.5-14 chr5 23740081 23740494 + 2 NA Intergenic LTR50|LTR|ERVL -211061 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 490-25 chr4 99921323 99921744 + 2 NA intron (NM_001031723, intron 3 of 7) intron (NM_001031723, intron 3 of 7) 25085 NM_001278310 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 440.5-20 chr6 67512450 67512674 + 2 NA Intergenic Intergenic -542789 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 638-8 chr2 203683198 203683890 + 2 NA Intergenic Intergenic -22931 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 282-9 chr11 19354523 19354800 + 2 NA intron (NM_001111018, intron 1 of 37) L1ME3|LINE|L1 3937 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 192.5-20 chr21 29562796 29562967 + 2 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -33159 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 174-17 chr20 37995781 37995906 + 2 NA intron (NM_001303457, intron 7 of 7) Charlie4z|DNA|hAT-Charlie 37613 NM_001303457 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 262-25 chr5 10508856 10509003 + 2 NA intron (NR_134289, intron 1 of 2) intron (NR_134289, intron 1 of 2) 265 NR_134290 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 506-27 chr7 45282843 45283226 + 2 NA Intergenic L1MC3|LINE|L1 125243 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 372.5-17 chr4 49097036 49097427 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 110589 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 264-4 chr12 101620947 101621139 + 2 NA intron (NM_206821, intron 3 of 28) intron (NM_206821, intron 3 of 28) 26072 NM_002465 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 448-30 chr7 4694068 4694542 + 2 NA intron (NM_001037165, intron 1 of 8) intron (NM_001037165, intron 1 of 8) 12010 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 492-31 chr8 136939964 136940362 + 2 NA Intergenic Intergenic 409365 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 283-43 chr8 69358725 69358935 + 2 NA Intergenic L1MA7|LINE|L1 89414 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 359.5-36 chr7 110218013 110218301 + 2 NA Intergenic L1P4|LINE|L1 -257944 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 444-31 chr8 111460628 111460880 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 84115 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 238-41 chr9 107451007 107451194 + 2 NA intron (NR_121581, intron 2 of 7) intron (NR_121581, intron 2 of 7) 15485 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 295.5-15 chr2 68650221 68650386 + 2 NA intron (NM_138964, intron 2 of 2) intron (NM_138964, intron 2 of 2) 6715 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 654.5-2 chr15 75664712 75665420 + 2 NA Intergenic L2a|LINE|L2 16059 NM_153271 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 397-20 chr2 52391743 52392113 + 2 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) 21280 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 343-3 chr10 64443068 64443317 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -382336 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 379-31 chr4 38053120 38053499 + 2 NA intron (NM_001253912, intron 13 of 20) intron (NM_001253912, intron 13 of 20) -56872 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 241-3 chr1 246370787 246370952 + 2 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 46543 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 486.5-16 chr7 131754261 131754565 + 2 NA Intergenic L1MC1|LINE|L1 -155807 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 507-8 chr14 51518359 51518792 + 2 NA intron (NM_001042481, intron 1 of 14) MIRc|SINE|MIR 29447 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 284.5-31 chr4 134382283 134382509 + 2 NA Intergenic Intergenic -41472 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 518.5-14 chr3 111323501 111323801 + 2 NA Intergenic Intergenic -218546 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 204.5-5 chr1 171354866 171355055 + 2 NA Intergenic Intergenic 16064 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 461-25 chr5 43418612 43418955 + 2 NA Intergenic Intergenic -6392 NM_148672 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 258.5-27 chr7 37072194 37072388 + 2 NA intron (NM_001206480, intron 15 of 21) THE1B|LTR|ERVL-MaLR 74495 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 321-11 chr15 65811077 65811294 + 2 NA Intergenic L1ME1|LINE|L1 -18892 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 385.5-20 chr19 9169634 9170011 + 2 NA Intergenic Intergenic -15772 NM_175883 162998 Hs.531755 NM_175883 ENSG00000188000 OR7D2 HTPCRH03|OR19-10|OR19-4 olfactory receptor family 7 subfamily D member 2 protein-coding 383-22 chr3 95509825 95510098 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 173232 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 675.5-10 chr4 63698539 63699006 + 2 NA Intergenic Intergenic 710678 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 464.5-15 chr20 50108163 50108428 + 2 NA intron (NM_001257399, intron 1 of 4) L2a|LINE|L2 4855 NM_001032288 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 294-26 chr3 72677934 72678138 + 2 NA Intergenic AluSx1|SINE|Alu -13787 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 525.5-8 chr2 135840433 135840870 + 2 NA 3' UTR (NM_005915, exon 17 of 17) 3' UTR (NM_005915, exon 17 of 17) -3467 NM_002299 3938 Hs.551506 NM_002299 ENSG00000115850 LCT LAC|LPH|LPH1 lactase protein-coding 499-21 chr7 26336059 26336328 + 2 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) -24691 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 260-21 chr21 35399679 35399909 + 2 NA intron (NR_073512, intron 2 of 2) MER96B|DNA|hAT-Tip100 180970 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 454-25 chr6 53698924 53699254 + 2 NA Intergenic Intergenic -33333 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 421-24 chr3 157349260 157349501 + 2 NA intron (NM_024621, intron 9 of 13) L1M2c|LINE|L1 -87470 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 241.5-15 chr16 57418045 57418195 + 2 NA Intergenic Intergenic 13353 NM_002987 6361 Hs.546294 NM_002987 ENSG00000102970 CCL17 A-152E5.3|ABCD-2|SCYA17|TARC C-C motif chemokine ligand 17 protein-coding 198-6 chr16 77696934 77697168 + 2 NA Intergenic Intergenic -25441 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 493.5-11 chr2 211046440 211046970 + 2 NA Intergenic Intergenic 429134 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 244.5-30 chr4 43975132 43975416 + 2 NA Intergenic Intergenic -41587 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 498.5-14 chr5 33328715 33329245 + 2 NA Intergenic Intergenic 99245 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 738.5-2 chr17 74223428 74223879 + 2 NA intron (NM_001330453, intron 2 of 13) intron (NM_001330453, intron 2 of 13) 8023 NM_001330453 94015 Hs.27935 NM_032646 ENSG00000141540 TTYH2 C17orf29 tweety family member 2 protein-coding 353-4 chr1 167473819 167474063 + 2 NA intron (NM_000734, intron 1 of 7) intron (NM_000734, intron 1 of 7) 44588 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 518-22 chr6 159615491 159615844 + 2 NA Intergenic Intergenic 77574 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 386.5-19 chr4 73222173 73222589 + 2 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 676 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 364-6 chr10 82880778 82881069 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -648003 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 515-9 chr16 49158727 49159048 + 2 NA Intergenic Intergenic 122951 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 218-4 chr10 15293072 15293213 + 2 NA intron (NM_001010924, intron 1 of 7) L2a|LINE|L2 78147 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 352-11 chr17 63178804 63179109 + 2 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 212721 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 476-4 chr1 223684300 223684654 + 2 NA Intergenic Intergenic -17116 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 279.5-14 chr5 38449026 38449188 + 2 NA intron (NM_182801, intron 2 of 5) intron (NM_182801, intron 2 of 5) 3561 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 289.5-21 chr2 70701193 70701423 + 2 NA intron (NM_017482, intron 4 of 12) L1ME4a|LINE|L1 66407 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 365.5-24 chr8 89133378 89133676 + 2 NA Intergenic Intergenic 624184 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 223-27 chr5 38117377 38117546 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) -31019 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 719 chr10 96243233 96243950 + 2 NA intron (NM_013314, intron 2 of 16) intron (NM_013314, intron 2 of 16) 27925 NM_001258442 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 446-12 chr12 38778434 38778861 + 2 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 126944 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 370-7 chr11 28920205 28920447 + 2 NA Intergenic Intergenic -442778 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 530-20 chr5 851586 852125 + 2 NA promoter-TSS (NM_024786) promoter-TSS (NM_024786) -869 NM_024786 79844 Hs.654874 NM_024786 ENSG00000188818 ZDHHC11 ZNF399 zinc finger DHHC-type containing 11 protein-coding 528-13 chr15 100911507 100911945 + 2 NA intron (NM_000693, intron 12 of 12) intron (NM_000693, intron 12 of 12) 7557 NR_135831 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 363-37 chr8 129072501 129072773 + 2 NA Intergenic Intergenic -106636 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 240-25 chr2 123585332 123585562 + 2 NA Intergenic Intergenic 439727 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 310-19 chr18 49407597 49407853 + 2 NA intron (NM_001353210, intron 2 of 16) MSTB|LTR|ERVL-MaLR 52920 NM_001353216 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 555-16 chr3 94330814 94331373 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 268032 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 351-32 chr3 186396721 186396958 + 2 NA Intergenic Intergenic -34605 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 247-6 chr14 67242423 67242642 + 2 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 1097 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 465-23 chr19 27897864 27898150 + 2 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -104067 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 421-36 chr9 18330582 18331000 + 2 NA Intergenic Intergenic -143362 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 205-19 chr2 31043031 31043276 + 2 NA intron (NM_024572, intron 1 of 14) L2a|LINE|L2 86487 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 368-24 chr22 45041147 45041432 + 2 NA Intergenic Intergenic -31284 NM_138415 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 286-8 chr14 41058619 41058844 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 104020 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 422-25 chr6 71197899 71198202 + 2 NA Intergenic Intergenic -90761 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 335.5 chr1 88012315 88012595 + 2 NA Intergenic Intergenic -640800 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 587-11 chr4 73570751 73571147 + 2 NA TTS (NM_001270392) TTS (NM_001270392) 49487 NM_001270391 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 372-8 chr10 38529154 38529576 + 2 NA Intergenic Intergenic 101219 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 305-25 chr2 225001509 225001700 + 2 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 8936 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 323-3 chr10 43959441 43959700 + 2 NA intron (NR_136147, intron 4 of 4) intron (NR_136147, intron 4 of 4) 47168 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 276-25 chr2 48345267 48345426 + 2 NA intron (NM_002158, intron 2 of 6) L1MA7|LINE|L1 30664 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 431-11 chr15 97737925 97738151 + 2 NA Intergenic Intergenic 136391 NR_024173 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 305-16 chr15 79462211 79462458 + 2 NA intron (NM_015206, intron 2 of 3) intron (NM_015206, intron 2 of 3) 29818 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 459-14 chr2 105699011 105699305 + 2 NA Intergenic Intergenic -45754 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 545.5-8 chr20 12210684 12211021 + 2 NA Intergenic Intergenic 292959 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 662.5-2 chr10 119914050 119914474 + 2 NA intron (NM_007190, intron 6 of 18) intron (NM_007190, intron 6 of 18) 21532 NM_007190 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 531-25 chr4 73498451 73498854 + 2 NA intron (NM_001133, intron 10 of 14) intron (NM_001133, intron 10 of 14) -10151 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 326-7 chr10 17602461 17602680 + 2 NA intron (NM_014241, intron 4 of 6) L1MA8|LINE|L1 14804 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 305.5-10 chr17 25920137 25920328 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1169009 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 285-6 chr10 80890580 80890804 + 2 NA Intergenic Intergenic 240895 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 285-9 chr11 41041755 41041937 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 417790 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 469-14 chr2 38847021 38847445 + 2 NA intron (NM_001329963, intron 10 of 23) intron (NM_001329963, intron 10 of 23) 28701 NM_198963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 260-30 chr5 91944157 91944340 + 2 NA Intergenic Intergenic -560931 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 508.5-6 chr16 9984051 9984381 + 2 NA intron (NM_001134408, intron 2 of 13) L1MA5|LINE|L1 197851 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 531-32 chr8 92235534 92236034 + 2 NA Intergenic Intergenic -132399 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 183-3 chr1 195651052 195651211 + 2 NA Intergenic L1MC1|LINE|L1 437584 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 455.5-15 chr20 59013171 59013515 + 2 NA Intergenic Intergenic -5911 NM_030773 81027 Hs.303023 NM_030773 ENSG00000101162 TUBB1 - tubulin beta 1 class VI protein-coding 206-26 chr8 128475087 128475263 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 89504 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 514-2 chr1 68721761 68722188 + 2 NA Intergenic Intergenic -224892 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 171.5-11 chr2 69100580 69100796 + 2 NA intron (NM_032208, intron 9 of 17) intron (NM_032208, intron 9 of 17) -2994 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 492.5-11 chr19 29075572 29075978 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 73220 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 372.5-23 chr5 130914415 130914670 + 2 NA Intergenic L1MA4|LINE|L1 250714 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 507-33 chr8 129935860 129936185 + 2 NA intron (NM_001353256, intron 2 of 13) Chap1_Mam|DNA|hAT-Charlie 3789 NM_001353268 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 314-22 chr20 32704089 32704265 + 2 NA intron (NM_001099339, intron 7 of 8) intron (NM_001099339, intron 7 of 8) -30236 NM_182584 284805 Hs.353262 NM_182584 ENSG00000198547 C20orf203 - chromosome 20 open reading frame 203 protein-coding 565-11 chr4 69991533 69991889 + 2 NA Intergenic Intergenic -4255 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 315-18 chr2 204718246 204718466 + 2 NA intron (NM_205863, intron 2 of 21) THE1D|LTR|ERVL-MaLR 172881 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 353.5-9 chr14 27209637 27209994 + 2 NA Intergenic HAL1|LINE|L1 301173 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 447-34 chrX 101248420 101248662 + 2 NA exon (NM_001171184, exon 12 of 22) exon (NM_001171184, exon 12 of 22) 28597 NM_001171184 1821 Hs.159291 NM_001939 ENSG00000102385 DRP2 DRP-2 dystrophin related protein 2 protein-coding 196-2 chr10 77528871 77529076 + 2 NA intron (NM_001271519, intron 1 of 28) L1MB5|LINE|L1 108835 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 737-8 chr6 119389688 119390135 + 2 NA Intergenic Intergenic -40150 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 308-10 chr14 45651067 45651232 + 2 NA Intergenic Intergenic 64453 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 684-9 chr6 1877310 1877792 + 2 NA intron (NM_001253846, intron 7 of 10) AluJr|SINE|Alu 267636 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 277.5-31 chr7 5644845 5645060 + 2 NA intron (NM_207111, intron 14 of 16) AluSx4|SINE|Alu 35509 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 317.5-7 chr11 83733378 83733788 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -51158 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-43 chr8 118407551 118407812 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -213320 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 538.5-15 chr4 58546169 58546491 + 2 NA Intergenic Intergenic -10002 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 229-29 chr7 1292198 1292387 + 2 NA Intergenic MER117|DNA|hAT-Charlie 59420 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 208.5-35 chrX 95557130 95557312 + 2 NA Intergenic MER66-int|LTR|ERV1 -493995 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 342-7 chr11 80347282 80347704 + 2 NA Intergenic Intergenic 415310 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 241-17 chr5 73619970 73620102 + 2 NA Intergenic Intergenic -6122 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 351.5-6 chr14 30610267 30610546 + 2 NA intron (NM_017769, intron 12 of 14) AluSx3|SINE|Alu -11848 NM_182835 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 296-39 chr9 83153556 83153778 + 2 NA Intergenic Intergenic -90525 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 372.5-21 chr4 71663295 71663540 + 2 NA Intergenic Intergenic 120662 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 314-21 chr20 2023754 2024015 + 2 NA Intergenic MIR|SINE|MIR -29599 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 318-39 chr6 137019552 137019847 + 2 NA intron (NM_001278724, intron 1 of 5) intron (NM_001278724, intron 1 of 5) 24613 NM_001278722 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 223-21 chr2 125928426 125928596 + 2 NA Intergenic Intergenic 189474 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 512.5-10 chr8 118749452 118749800 + 2 NA Intergenic L1M5|LINE|L1 -127663 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 414.5-14 chr20 41530414 41530736 + 2 NA intron (NM_032221, intron 3 of 36) (AT)n|Simple_repeat|Simple_repeat 87802 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 393.5-2 chr10 84425267 84425672 + 2 NA intron (NM_001284242, intron 1 of 6) intron (NM_001284242, intron 1 of 6) 300 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 399-13 chr13 77948390 77948722 + 2 NA intron (NM_000115, intron 1 of 7) intron (NM_000115, intron 1 of 7) 26971 NM_000115 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 232-31 chr9 28082258 28082436 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -508481 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 297.5-31 chr7 95819353 95819501 + 2 NA intron (NM_001135557, intron 4 of 15) intron (NM_001135557, intron 4 of 15) 46921 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 415-4 chr10 24892150 24892467 + 2 NA intron (NM_020200, intron 3 of 8) L1MA6|LINE|L1 60298 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 433-15 chr2 54573518 54573946 + 2 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 15338 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 360-40 chr5 62694064 62694263 + 2 NA Intergenic Intergenic 115344 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 384.5-3 chr1 217928714 217928949 + 2 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat 35931 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 472-11 chr22 28636525 28636933 + 2 NA intron (NM_001145418, intron 1 of 22) L1MA9|LINE|L1 43136 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 448-14 chr19 51306987 51307421 + 2 NA Intergenic MER21-int|LTR|ERVL -4644 NM_001101372 402665 NM_001101372 ENSG00000142549 IGLON5 - IgLON family member 5 protein-coding 219.5-39 chr8 80927666 80927973 + 2 NA Intergenic HAL1b|LINE|L1 -53038 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 500.5-15 chr5 2723688 2724188 + 2 NA Intergenic Intergenic 11347 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 367-25 chr4 181168445 181168761 + 2 NA Intergenic Intergenic -9454 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 503-9 chr17 33560517 33560914 + 2 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -26955 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 320-37 chr8 124706640 124706891 + 2 NA intron (NM_001282971, intron 1 of 14) L3|LINE|CR1 21708 NM_001363297 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 227-4 chr10 63068462 63068629 + 2 NA Intergenic AluSx|SINE|Alu -64702 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 242-18 chr3 65863146 65863343 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -30572 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 460.5-36 chr8 115299284 115299668 + 2 NA Intergenic LTR49|LTR|ERV1 368537 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 314-46 chrX 136198288 136198538 + 2 NA intron (NM_001159699, intron 1 of 5) intron (NM_001159699, intron 1 of 5) 1366 NM_001159699 2273 Hs.435369 NM_001449 ENSG00000022267 FHL1 FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 320-26 chr6 72283155 72283377 + 2 NA intron (NM_001350435, intron 15 of 23) intron (NM_001350435, intron 15 of 23) 66325 NM_001350470 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 301.5 chr1 93737199 93737498 + 2 NA intron (NM_001261408, intron 2 of 13) MLT1C|LTR|ERVL-MaLR 38035 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 379-13 chr14 40486289 40486602 + 2 NA Intergenic Intergenic -468266 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 186-13 chr2 213135448 213135580 + 2 NA intron (NM_001371277, intron 3 of 6) AluJr|SINE|Alu 14923 NM_001371275 411.5-2 chr10 30055308 30055513 + 2 NA intron (NM_001350021, intron 1 of 4) intron (NM_001350021, intron 1 of 4) 4176 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 270-11 chr18 6555650 6555873 + 2 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 44345 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 362.5-22 chr3 113289465 113289805 + 2 NA 3' UTR (NM_001164496, exon 35 of 35) 3' UTR (NM_001164496, exon 35 of 35) 77519 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 419-15 chr18 61077799 61078039 + 2 NA Intergenic Intergenic -255511 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 505-2 chr10 64982962 64983359 + 2 NA Intergenic Intergenic -58642 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 581.5-6 chr16 50351869 50352236 + 2 NA intron (NM_013263, intron 4 of 16) L1MA6|LINE|L1 16936 NM_013263 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 261-6 chr11 64545725 64545931 + 2 NA Intergenic Intergenic -10113 NM_018484 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 397.5-11 chr17 76870330 76870614 + 2 NA intron (NM_144677, intron 1 of 16) CpG 2068 NM_001199172 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 362-23 chr20 50494545 50494783 + 2 NA Intergenic Intergenic -15657 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 671-5 chr14 46619568 46620025 + 2 NA Intergenic L1M2|LINE|L1 31985 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 187-26 chr9 132930129 132930358 + 2 NA intron (NM_000368, intron 2 of 22) MER5A|DNA|hAT-Charlie 14373 NM_001162427 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 527-25 chr7 40275481 40275837 + 2 NA intron (NM_024728, intron 8 of 14) Charlie4a|DNA|hAT-Charlie 140683 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 412-8 chr11 43553235 43553608 + 2 NA Intergenic Intergenic -6235 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 233.5-22 chr3 184279824 184280013 + 2 NA intron (NM_014693, intron 7 of 18) intron (NM_014693, intron 7 of 18) 3896 NM_001037324 9718 Hs.146161 NM_001037324 ENSG00000145194 ECE2 EEF1AKMT4 endothelin converting enzyme 2 protein-coding 614-6 chr14 52368018 52368476 + 2 NA Intergenic L2c|LINE|L2 53935 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 435-21 chr3 95036914 95037203 + 2 NA Intergenic L1PB2|LINE|L1 98795 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 234-15 chr2 203392985 203393206 + 2 NA intron (NM_005759, intron 4 of 9) AluSz6|SINE|Alu 26211 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 640 chr17 80595504 80596025 + 2 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 50926 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 325-22 chr5 58116647 58117007 + 2 NA intron (NR_104669, intron 2 of 4) intron (NR_104669, intron 2 of 4) 5514 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 313-37 chr8 110102542 110102814 + 2 NA Intergenic Intergenic -126907 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 384.5-28 chrX 88618543 88618748 + 2 NA Intergenic L1MA4|LINE|L1 -128580 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 261-20 chr5 19680098 19680282 + 2 NA intron (NM_001349562, intron 5 of 13) L1PA15|LINE|L1 206082 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 284-26 chr4 47849754 47849989 + 2 NA intron (NR_103795, intron 23 of 23) MER2|DNA|TcMar-Tigger -11765 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 362-18 chr2 74397095 74397342 + 2 NA non-coding (NR_158174, exon 3 of 3) non-coding (NR_158174, exon 3 of 3) -5131 NR_033935 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 199.5-37 chr9 21327698 21327797 + 2 NA Intergenic Intergenic 7657 NM_018847 55958 Hs.701778 NM_018847 ENSG00000198642 KLHL9 - kelch like family member 9 protein-coding 193-8 chr2 62445623 62445792 + 2 NA Intergenic L1MEd|LINE|L1 60488 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 221.5-16 chr20 4719709 4719984 + 2 NA Intergenic Intergenic -2063 NM_012409 23627 Hs.406696 NM_012409 ENSG00000171864 PRND DOPPEL|DPL|PrPLP|dJ1068H6.4 prion like protein doppel protein-coding 434-18 chr5 41242731 41243395 + 2 NA intron (NM_001115131, intron 1 of 17) L1MA7|LINE|L1 18406 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 368-29 chr4 45402871 45403096 + 2 NA Intergenic MER57A-int|LTR|ERV1 -676349 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 535 chr1 11836133 11836434 + 2 NA intron (NM_001286, intron 18 of 22) intron (NM_001286, intron 18 of 22) -4036 NR_037806 100379251 Hs.710015 NR_037806 NPPA-AS1 NPPA-AS|NPPAAS NPPA antisense RNA 1 ncRNA 408-28 chr3 98339377 98339772 + 2 NA Intergenic LTR41C|LTR|ERVL -14280 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 234.5-20 chr21 29864518 29864718 + 2 NA intron (NM_000830, intron 1 of 16) L1MEi|LINE|L1 75378 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 218.5-20 chr3 50009013 50009188 + 2 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) 68950 NM_005777 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 527-20 chr3 101556632 101557057 + 2 NA Intergenic L1MB2|LINE|L1 -5024 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 280-26 chr4 2595951 2596157 + 2 NA intron (NM_001366318, intron 1 of 20) intron (NM_001366318, intron 1 of 20) -29378 NM_001256666 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 300-15 chr3 2219822 2220007 + 2 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -18915 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 421-15 chr2 18573489 18573828 + 2 NA intron (NM_001199104, intron 9 of 10) intron (NM_001199104, intron 9 of 10) -13005 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 320-21 chr4 15640127 15640363 + 2 NA intron (NR_036464, intron 4 of 11) AluJo|SINE|Alu 15112 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 236-25 chr5 6904959 6905171 + 2 NA Intergenic Intergenic -77144 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 385-29 chr4 51930450 51930749 + 2 NA Intergenic Intergenic 87020 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 258.5-30 chr8 90994886 90995153 + 2 NA 3' UTR (NM_018710, exon 7 of 7) 3' UTR (NM_018710, exon 7 of 7) -9781 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 351-14 chr16 86716476 86716816 + 2 NA Intergenic MIRb|SINE|MIR 5313 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 288-13 chr15 99753178 99753453 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -19871 NM_001284422 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 400-9 chr15 54805737 54806068 + 2 NA Intergenic Intergenic -250845 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 249.5-17 chr2 168013476 168013692 + 2 NA intron (NM_013233, intron 15 of 17) intron (NM_013233, intron 15 of 17) -72440 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 343.5-30 chr8 28555116 28555395 + 2 NA intron (NM_017412, intron 6 of 7) intron (NM_017412, intron 6 of 7) -50073 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 527.5-10 chr5 63666524 63667000 + 2 NA Intergenic L1MB4|LINE|L1 295530 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 266-23 chr2 113990250 113990444 + 2 NA intron (NR_148508, intron 1 of 1) L1M5|LINE|L1 -10363 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 470-35 chr7 152652227 152652630 + 2 NA intron (NM_005431, intron 2 of 2) intron (NM_005431, intron 2 of 2) 23713 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 592-3 chr11 77778308 77778670 + 2 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 42345 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 340.5-8 chr12 64122905 64123231 + 2 NA intron (NM_001346201, intron 18 of 21) intron (NM_001346201, intron 18 of 21) 99228 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 312-3 chr10 94254073 94254394 + 2 NA exon (NM_016341, exon 10 of 33) exon (NM_016341, exon 10 of 33) 32837 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 216-10 chr17 40730105 40730247 + 2 NA Intergenic Intergenic 25155 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 356.5-11 chr11 103966479 103966820 + 2 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -69991 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 336-5 chr10 54177985 54178350 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -308063 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 406-6 chr17 56114195 56114475 + 2 NA Intergenic L1ME3G|LINE|L1 -39140 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 175.5-3 chr11 5050671 5050760 + 2 NA Intergenic L1MB8|LINE|L1 4189 NM_001001916 119679 Hs.553558 NM_001001916 ENSG00000205495 OR52J3 OR11-32 olfactory receptor family 52 subfamily J member 3 protein-coding 419.5-15 chr4 63681618 63682023 + 2 NA Intergenic Intergenic 727630 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 597-18 chr4 125399086 125399677 + 2 NA intron (NM_001291303, intron 2 of 16) intron (NM_001291303, intron 2 of 16) 82969 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 439.5-8 chr11 43728658 43728914 + 2 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 48048 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 421-7 chr10 103272648 103273015 + 2 NA Intergenic AluSz6|SINE|Alu -4307 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 219-10 chr12 46762250 46762400 + 2 NA Intergenic L1MDa|LINE|L1 63672 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 165.5-17 chr5 17403517 17403670 + 2 NA promoter-TSS (NR_134275) promoter-TSS (NR_134275) -426 NR_134275 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 517-15 chr9 29170273 29170573 + 2 NA intron (NM_001354574, intron 1 of 5) L1PB4|LINE|L1 41876 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 788-3 chr1 99784299 99784752 + 2 NA Intergenic L3|LINE|CR1 -17890 NM_001361041 391059 Hs.454779 NM_001013660 ENSG00000156869 FRRS1 SDFR2|SDR2 ferric chelate reductase 1 protein-coding 313-22 chr3 15870279 15870539 + 2 NA Intergenic L1MA9|LINE|L1 -3362 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 484.5-2 chr1 230220667 230221133 + 2 NA intron (NM_004481, intron 3 of 15) intron (NM_004481, intron 3 of 15) 153662 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 189-2 chr10 69700484 69700684 + 2 NA Intergenic Intergenic 70337 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 294-10 chr11 36162444 36162804 + 2 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -84723 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 467-28 chr9 132323623 132323963 + 2 NA intron (NM_001351527, intron 10 of 25) AluJb|SINE|Alu 31063 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 427-4 chr1 107131749 107131990 + 2 NA Intergenic Intergenic -8219 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 281-7 chr11 74327563 74327828 + 2 NA Intergenic Intergenic -16055 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 221.5-29 chr8 112449091 112449230 + 2 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -194333 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 366.5-19 chr2 168253434 168253809 + 2 NA Intergenic MER65A|LTR|ERV1 -6026 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 227-16 chr16 50516897 50517030 + 2 NA Intergenic L1MA9|LINE|L1 -31433 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 440.5-2 chr1 195958710 195959068 + 2 NA Intergenic Intergenic 129826 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 269-7 chr10 83928017 83928222 + 2 NA Intergenic L1MB3|LINE|L1 -211390 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 246.5-23 chr3 6118805 6118958 + 2 NA Intergenic Intergenic 686568 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 462.5-10 chr2 178364323 178364812 + 2 NA intron (NM_001201482, intron 13 of 23) L2|LINE|L2 44325 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 193.5-18 chr2 62970947 62971111 + 2 NA intron (NM_001354215, intron 15 of 24) intron (NM_001354215, intron 15 of 24) 76682 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 435.5-22 chr8 126564886 126565185 + 2 NA Intergenic Intergenic -6557 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 542.5-7 chr12 6312970 6313256 + 2 NA 5' UTR (NM_001144857, exon 1 of 15) 5' UTR (NM_001144857, exon 1 of 15) 462 NM_001144857 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 146-6 chr18 6880173 6880270 + 2 NA intron (NM_001010000, intron 9 of 16) intron (NM_001010000, intron 9 of 16) 45736 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 191.5-24 chr8 127744831 127744926 + 2 NA Intergenic Intergenic 8647 NM_002467 4609 Hs.202453 NM_002467 ENSG00000136997 MYC MRTL|MYCC|bHLHe39|c-Myc MYC proto-oncogene, bHLH transcription factor protein-coding 280-37 chr8 91388965 91389271 + 2 NA intron (NM_134266, intron 15 of 18) MIR1_Amn|SINE|MIR 139799 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 331-13 chr11 97287831 97288128 + 2 NA Intergenic Intergenic 779554 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 174-2 chr1 55160143 55160292 + 2 NA intron (NM_015306, intron 8 of 67) intron (NM_015306, intron 8 of 67) 55147 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 340-38 chr8 81460307 81460618 + 2 NA intron (NM_001080526, intron 1 of 3) intron (NM_001080526, intron 1 of 3) 1061 NM_001080526 646480 Hs.653176 NM_001080526 ENSG00000205186 FABP9 PERF|PERF15|T-FABP|TLBP fatty acid binding protein 9 protein-coding 553-6 chr20 57850079 57850612 + 2 NA Intergenic AluSx1|SINE|Alu -138809 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 643-10 chr2 73603946 73604429 + 2 NA intron (NM_015120, intron 21 of 22) L1ME4b|LINE|L1 38235 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 312-26 chr5 37696882 37697095 + 2 NA intron (NM_001345998, intron 10 of 17) MIR|SINE|MIR 137834 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 198.5-16 chr22 29171549 29171677 + 2 NA Intergenic Intergenic -34283 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 373-14 chr13 69729458 69729717 + 2 NA intron (NM_001286725, intron 7 of 9) intron (NM_001286725, intron 7 of 9) -377626 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 435 chr1 29880176 29880534 + 2 NA Intergenic MIRb|SINE|MIR 157257 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 231-12 chr2 45097557 45097726 + 2 NA Intergenic L1MEf|LINE|L1 -88189 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 396 chr1 18935120 18935605 + 2 NA intron (NM_001136265, intron 1 of 8) intron (NM_001136265, intron 1 of 8) 21314 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 445-23 chr6 39050884 39051179 + 2 NA intron (NR_136563, intron 1 of 13) intron (NR_136563, intron 1 of 13) 2250 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 501.5-14 chr2 66138467 66139004 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 219593 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 449-25 chr5 118116099 118116351 + 2 NA intron (NR_104997, intron 2 of 2) MER90|LTR|ERV1 -166349 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 535-20 chr5 143430863 143431392 + 2 NA intron (NM_001018075, intron 1 of 8) intron (NM_001018075, intron 1 of 8) 3682 NM_001364183 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 405.5-6 chr18 13880411 13880786 + 2 NA Intergenic LTR28B|LTR|ERV1 34938 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 302-2 chr1 56203211 56203508 + 2 NA Intergenic MIRc|SINE|MIR -211604 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 598.5-3 chr17 61124857 61125216 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 242668 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 350-46 chrX 40914224 40914480 + 2 NA Intergenic L1MC5|LINE|L1 -81156 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 471-23 chr3 7931214 7931549 + 2 NA Intergenic Intergenic 84926 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 403-33 chr5 89565835 89566141 + 2 NA Intergenic Intergenic 450732 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 517.5-8 chr18 32121062 32121552 + 2 NA intron (NM_001191324, intron 3 of 6) AluSp|SINE|Alu 28701 NM_198128 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 342-43 chrX 147815343 147815681 + 2 NA Intergenic Intergenic 96305 NR_024501 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 290.5-8 chr12 3353248 3353600 + 2 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 12698 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 240-12 chr12 38020377 38020542 + 2 NA Intergenic ALR/Alpha|Satellite|centr -296315 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 397-24 chr4 27665274 27665546 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 447931 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 342-15 chr2 5810426 5810747 + 2 NA TTS (NR_146954) TTS (NR_146954) 2010 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 436-8 chr14 45010331 45010883 + 2 NA intron (NM_001308120, intron 6 of 19) intron (NM_001308120, intron 6 of 19) 48417 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 423-6 chr14 52826010 52826263 + 2 NA Intergenic Intergenic -34529 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 752.5 chr3 21765561 21766205 + 2 NA Intergenic Intergenic -14673 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 275-27 chr4 30524630 30524885 + 2 NA Intergenic L1PB4|LINE|L1 -195612 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 283.5-27 chr3 159881352 159881636 + 2 NA intron (NM_001197113, intron 6 of 10) intron (NM_001197113, intron 6 of 10) 41633 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 361.5-23 chr5 9470686 9470994 + 2 NA intron (NM_003966, intron 1 of 22) MLT1I|LTR|ERVL-MaLR -40493 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 398.5-7 chr15 62325971 62326191 + 2 NA Intergenic MIR3|SINE|MIR -16948 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 405-33 chr7 14722205 14722614 + 2 NA intron (NM_001350717, intron 5 of 24) L1MC1|LINE|L1 119041 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 298.5-24 chr7 24926813 24927061 + 2 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) -34316 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 414-2 chr1 99051538 99051898 + 2 NA intron (NR_033940, intron 1 of 2) L1P4a|LINE|L1 -46857 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 212.5-12 chr17 60154694 60154935 + 2 NA intron (NR_137422, intron 1 of 11) intron (NR_137422, intron 1 of 11) 4841 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 510-11 chr18 66273046 66273478 + 2 NA Intergenic MER57A1|LTR|ERV1 330828 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 310.5-38 chr6 38849853 38850180 + 2 NA intron (NM_001371, intron 36 of 91) intron (NM_001371, intron 36 of 91) 103091 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 532-6 chr17 19551120 19551720 + 2 NA intron (NM_018242, intron 5 of 16) intron (NM_018242, intron 5 of 16) -6140 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 319.5-23 chr4 2681430 2681629 + 2 NA intron (NM_001256668, intron 11 of 19) AluJb|SINE|Alu 56097 NR_046335 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 425-35 chr5 45311285 45311801 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 384837 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 579-21 chr6 56487323 56487684 + 2 NA intron (NM_001144770, intron 78 of 94) MER47A|DNA|TcMar-Tigger -93375 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 440.5-4 chr10 64627634 64628025 + 2 NA Intergenic L2c|LINE|L2 -197699 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 760.5-6 chr4 141322520 141323028 + 2 NA intron (NR_121625, intron 3 of 3) AluJb|SINE|Alu 9843 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 631.5-2 chr12 76571371 76571752 + 2 NA Intergenic Intergenic -11790 NM_001319653 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 136-5 chr2 21886289 21886408 + 2 NA Intergenic Intergenic -175696 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 430-31 chr6 6702177 6702513 + 2 NA Intergenic Intergenic -79519 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 312-7 chr16 31361860 31362090 + 2 NA intron (NM_000887, intron 10 of 29) intron (NM_000887, intron 10 of 29) 6799 NM_001286375 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 371-23 chr4 80548293 80548492 + 2 NA intron (NM_152770, intron 2 of 5) L1PA16|LINE|L1 212672 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 460-15 chr3 71108800 71109068 + 2 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) 21652 NM_001349337 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 223-4 chr11 75310267 75310502 + 2 NA intron (NM_004041, intron 1 of 15) L2b|LINE|L2 24802 NR_029891 442900 NR_029891 ENSG00000199090 MIR326 MIRN326|hsa-mir-326|mir-326 microRNA 326 ncRNA 416-3 chr1 238380487 238380763 + 2 NA Intergenic Intergenic 105392 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 268-11 chr2 204873561 204873799 + 2 NA intron (NM_205863, intron 2 of 21) L2a|LINE|L2 328205 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 292-22 chr21 29660496 29660746 + 2 NA intron (NM_000830, intron 4 of 16) MamGypsy2-I|LTR|Gypsy 64581 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 160.5-10 chr17 9163518 9163657 + 2 NA intron (NM_004822, intron 3 of 6) intron (NM_004822, intron 3 of 6) 15531 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 385-26 chr4 25271844 25272121 + 2 NA intron (NM_018323, intron 9 of 9) AluJb|SINE|Alu 37949 NM_018323 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 261-3 chr10 76468101 76468345 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -419821 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 295-39 chr5 123218406 123218617 + 2 NA Intergenic Intergenic -128195 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 424-9 chr2 196401156 196401554 + 2 NA intron (NM_020760, intron 2 of 28) L1ME3G|LINE|L1 -39178 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 292-11 chr16 56725930 56726209 + 2 NA Intergenic Intergenic -4060 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 418.5-11 chr13 109480125 109480462 + 2 NA Intergenic Intergenic 79597 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 350-14 chr19 39369414 39369620 + 2 NA intron (NM_018028, intron 5 of 15) intron (NM_018028, intron 5 of 15) 21589 NR_046384 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 476-22 chr22 35287601 35288127 + 2 NA intron (NM_001003681, intron 8 of 10) AluSp|SINE|Alu -11411 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 345-14 chr18 2402142 2402430 + 2 NA Intergenic L1MA4A|LINE|L1 169219 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 292-20 chr20 4617387 4617555 + 2 NA Intergenic L1MDa|LINE|L1 -68985 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 195-23 chr8 97121606 97121772 + 2 NA intron (NM_016134, intron 7 of 7) L1ME1|LINE|L1 156239 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 438-21 chr22 21572837 21573208 + 2 NA intron (NR_046082, intron 1 of 3) (CTCCCA)n|Simple_repeat|Simple_repeat 5308 NM_003347 7332 Hs.108104 NM_003347 ENSG00000185651 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin conjugating enzyme E2 L3 protein-coding 620.5-2 chr1 69030587 69030976 + 2 NA Intergenic L1MA4A|LINE|L1 -25117 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 394-8 chr14 49062358 49062657 + 2 NA Intergenic Intergenic 523873 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 255-22 chr3 193581429 193581643 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -11608 NM_130837 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1 mitochondrial dynamin like GTPase protein-coding 390-13 chr2 28026737 28026969 + 2 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 30486 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 168.5-2 chr1 179796042 179796210 + 2 NA intron (NM_001329719, intron 1 of 4) Charlie4z|DNA|hAT-Charlie -7798 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 329-34 chr7 54508465 54508803 + 2 NA Intergenic Intergenic -33691 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 450-7 chr14 51988025 51988255 + 2 NA Intergenic AluJb|SINE|Alu -1406 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 449-35 chrX 52001248 52001535 + 2 NA Intergenic L1PA7|LINE|L1 62082 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 257-41 chr7 3337418 3337665 + 2 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 36289 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 275.5-26 chr4 71294504 71294770 + 2 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -44416 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 229-17 chr3 42113447 42113619 + 2 NA intron (NM_001349247, intron 1 of 16) AluSq|SINE|Alu 22176 NM_001265608 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 353.5-11 chr17 47329484 47329713 + 2 NA intron (NM_001195192, intron 4 of 21) intron (NM_001195192, intron 4 of 21) 5643 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 235-18 chr2 63100314 63100528 + 2 NA Intergenic L1MA4A|LINE|L1 19121 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 599.5-9 chr5 51812087 51812447 + 2 NA Intergenic Intergenic -195764 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 304-8 chr14 42578309 42578471 + 2 NA Intergenic L1MA3|LINE|L1 971534 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 473-5 chr12 64626914 64627356 + 2 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -4530 NR_037515 100500856 NR_037515 ENSG00000266016 MIR548Z - microRNA 548z ncRNA 377-18 chr20 52735562 52735801 + 2 NA Intergenic Intergenic 114843 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 367-14 chr15 80478508 80478880 + 2 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 74312 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 468.5-14 chr7 113597107 113597497 + 2 NA Intergenic Intergenic 321707 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 447.5-8 chr2 81908713 81909185 + 2 NA Intergenic Intergenic -442003 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 371-36 chrX 58201557 58202085 + 2 NA Intergenic HSAT4|Satellite|centr -291188 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 416-24 chr6 124336040 124336343 + 2 NA intron (NM_001040214, intron 2 of 6) MLT1L|LTR|ERVL-MaLR 53186 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 264.5-16 chr17 82459235 82459397 + 2 NA intron (NM_031968, intron 1 of 11) CpG 575 NM_012336 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 283.5-34 chr8 26258095 26258337 + 2 NA Intergenic Intergenic -33292 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 538-7 chr17 58652605 58652979 + 2 NA intron (NM_031272, intron 1 of 31) MIR|SINE|MIR 39263 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 305-46 chr7 70735175 70735466 + 2 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -396824 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 283-11 chr11 76329134 76329389 + 2 NA Intergenic Intergenic 51704 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 281-3 chr1 33845712 33846024 + 2 NA intron (NM_052896, intron 6 of 69) intron (NM_052896, intron 6 of 69) -14607 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 340-29 chr3 69316025 69316452 + 2 NA intron (NM_015123, intron 1 of 22) MamSINE1|SINE|tRNA-RTE 69850 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 427-11 chr12 74523027 74523356 + 2 NA Intergenic Intergenic -14644 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 313-38 chr8 129813026 129813226 + 2 NA Intergenic L1PA16|LINE|L1 -26502 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 357-44 chr8 117596394 117596613 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 75790 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 128-6 chr5 148340571 148340688 + 2 NA TTS (NM_001040433) TTS (NM_001040433) 5070 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 516-12 chr14 92374461 92374834 + 2 NA intron (NM_153647, intron 3 of 17) intron (NM_153647, intron 3 of 17) 50839 NM_153646 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 439-18 chr7 49605149 49605550 + 2 NA Intergenic L1PB1|LINE|L1 -168289 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 449-14 chr16 2435492 2435951 + 2 NA intron (NM_001761, intron 3 of 16) intron (NM_001761, intron 3 of 16) 6274 NM_001761 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 392-4 chr1 175836186 175836582 + 2 NA Intergenic LTR29|LTR|ERV1 -40959 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 263-9 chr14 44516543 44516799 + 2 NA intron (NR_135257, intron 2 of 2) L1M1|LINE|L1 9262 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 220-31 chr7 92054826 92055055 + 2 NA intron (NM_147185, intron 22 of 49) intron (NM_147185, intron 22 of 49) 79537 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 353-12 chr15 39336294 39336617 + 2 NA Intergenic Intergenic 85786 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 164-8 chr16 81124374 81124503 + 2 NA intron (NM_052892, intron 37 of 43) AluY|SINE|Alu -28043 NR_033249 2653 Hs.546256 NM_004483 ENSG00000140905 GCSH GCE|NKH glycine cleavage system protein H protein-coding 181-14 chr5 181249503 181249622 + 2 NA intron (NR_109909, intron 2 of 2) AluJo|SINE|Alu 3021 NR_109909 101928649 Hs.723307 NR_109909 CTC-338M12.4 - uncharacterized LOC101928649 ncRNA 237.5-14 chr20 48699692 48699854 + 2 NA intron (NM_020820, intron 7 of 39) intron (NM_020820, intron 7 of 39) 128226 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 372-4 chr1 185033614 185033871 + 2 NA Intergenic Intergenic -11816 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 624.5 chr1 40382044 40382457 + 2 NA intron (NM_001198978, intron 1 of 9) intron (NM_001198978, intron 1 of 9) 7617 NM_001198978 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 207.5-26 chr4 20378135 20378344 + 2 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) -13950 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 381-2 chr1 102564044 102564346 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 544301 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 310-33 chr5 29987033 29987323 + 2 NA Intergenic L1M6|LINE|L1 106618 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 401-23 chr22 50407001 50407441 + 2 NA promoter-TSS (NR_162128) promoter-TSS (NR_162128) -221 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 448.5-14 chr3 171773422 171773676 + 2 NA intron (NM_002662, intron 1 of 26) AluSg|SINE|Alu 36934 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 532.5-8 chr17 58168296 58168578 + 2 NA Intergenic AluSz|SINE|Alu -1219 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 468.5-9 chr4 30434269 30434626 + 2 NA Intergenic Intergenic -285922 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 565-9 chr3 53527476 53527803 + 2 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 33028 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 712.5-10 chr7 90855423 90856008 + 2 NA intron (NM_012395, intron 4 of 13) MADE2|DNA|TcMar-Mariner 145899 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 231.5-29 chr6 104745992 104746193 + 2 NA intron (NR_146792, intron 21 of 24) Charlie1a|DNA|hAT-Charlie 113454 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 279 chr1 103177657 103177815 + 2 NA Intergenic Intergenic -69214 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 595-8 chr2 21667960 21668340 + 2 NA Intergenic Intergenic 42502 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 294-41 chr9 104744502 104744754 + 2 NA Intergenic L1MEd|LINE|L1 -3055 NM_015469 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 289-13 chr13 76603290 76603552 + 2 NA Intergenic Intergenic 282984 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 545.5-4 chr13 88992911 88993258 + 2 NA Intergenic L1PA16|LINE|L1 -242207 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 280-3 chr1 113027329 113027611 + 2 NA intron (NR_103777, intron 2 of 2) intron (NR_103777, intron 2 of 2) 45632 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 330-34 chr5 36934340 36934552 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 57677 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 185-6 chr20 34158235 34158336 + 2 NA Intergenic L1ME2|LINE|L1 -46042 NM_001316364 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 306-19 chr3 75991239 75991457 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -205799 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 373.5-2 chr1 241934206 241934585 + 2 NA Intergenic Intergenic -23372 NM_001290693 441925 Hs.731347 NM_001290693 ENSG00000196289 BECN2 BECN1L1|BECN1P1 beclin 2 protein-coding 269-13 chr12 40871888 40872120 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -36353 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 236-3 chr10 56795792 56796015 + 2 NA Intergenic L1M4c|LINE|L1 -434630 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 393-41 chr9 102584545 102584861 + 2 NA intron (NR_103830, intron 2 of 4) L1M5|LINE|L1 65066 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 503-12 chr19 44577886 44578202 + 2 NA Intergenic L2c|LINE|L2 -21127 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 294.5-24 chr4 59280740 59280988 + 2 NA Intergenic Intergenic 267291 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 421.5-12 chr17 27683656 27684091 + 2 NA Intergenic Intergenic 52685 NR_024043 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 254.5-44 chr8 62962475 62962800 + 2 NA intron (NM_001304533, intron 6 of 6) MER20|DNA|hAT-Charlie -15224 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 370 chr1 93035905 93036172 + 2 NA Intergenic Intergenic -43197 NM_001164392 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 416.5-18 chr5 73934240 73934670 + 2 NA intron (NM_001080479, intron 36 of 36) L1MC5a|LINE|L1 120909 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 861-3 chr8 38757659 38758332 + 2 NA intron (NM_001352804, intron 1 of 10) intron (NM_001352804, intron 1 of 10) 720 NM_001352804 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 381-34 chrX 98384953 98385238 + 2 NA Intergenic MER34A|LTR|ERV1 -820560 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 496-8 chr17 9611664 9612000 + 2 NA intron (NM_001080556, intron 6 of 12) L1ME4c|LINE|L1 -33685 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 222.5-24 chr5 16716805 16717005 + 2 NA intron (NM_012334, intron 19 of 40) AluSx|SINE|Alu -99847 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 476-18 chr2 77391236 77391687 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 130915 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 284-10 chr14 35665973 35666205 + 2 NA intron (NM_014990, intron 25 of 40) AluSx|SINE|Alu 96842 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 406-25 chr8 125731883 125732157 + 2 NA Intergenic Intergenic 219177 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 543 chr1 108833314 108833692 + 2 NA intron (NR_049760, intron 8 of 13) AluSx|SINE|Alu 23591 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 679.5-8 chr6 70704702 70705119 + 2 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 36380 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 525-20 chr5 7928739 7929379 + 2 NA Intergenic Intergenic 59911 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 387-9 chr13 107706108 107706324 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 129242 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 318-29 chr3 194725313 194725544 + 2 NA intron (NR_037891, intron 1 of 3) L2a|LINE|L2 17007 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 578-9 chr14 58349142 58349565 + 2 NA intron (NM_002892, intron 15 of 23) intron (NM_002892, intron 15 of 23) -46577 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 411-7 chr10 69427458 69427769 + 2 NA Intergenic Intergenic -10695 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 490.5-6 chr16 88823066 88823545 + 2 NA intron (NM_001323544, intron 12 of 14) intron (NM_001323544, intron 12 of 14) -11377 NM_001030018 353 Hs.28914 NM_000485 ENSG00000198931 APRT AMP|APRTD adenine phosphoribosyltransferase protein-coding 242-16 chr19 49485769 49485959 + 2 NA intron (NM_001459, intron 8 of 8) intron (NM_001459, intron 8 of 8) -1690 NM_001270491 23521 Hs.523185 NM_012423 ENSG00000142541 RPL13A L13A|TSTA1 ribosomal protein L13a protein-coding 491-2 chr1 50500687 50501111 + 2 NA intron (NM_007051, intron 15 of 18) intron (NM_007051, intron 15 of 18) -77456 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 338-38 chr8 122731070 122731334 + 2 NA Intergenic Intergenic -37096 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 299-12 chr14 29598822 29599182 + 2 NA intron (NM_001330069, intron 16 of 18) intron (NM_001330069, intron 16 of 18) 328094 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 366-23 chr8 125940202 125940524 + 2 NA TTS (NR_038446) TTS (NR_038446) 10834 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 551.5-5 chr20 47581152 47581548 + 2 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 79463 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 422.5-21 chr7 120577837 120578169 + 2 NA intron (NM_012281, intron 1 of 5) AluJb|SINE|Alu 280141 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 517.5-12 chr3 75163365 75163669 + 2 NA Intergenic Intergenic -50959 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 168.5-22 chr4 183134320 183134404 + 2 NA intron (NM_024949, intron 1 of 22) L1MEd|LINE|L1 35105 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 328-24 chr20 8372231 8372469 + 2 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 123646 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 273.5-14 chr2 69498071 69498241 + 2 NA intron (NM_014911, intron 16 of 21) intron (NM_014911, intron 16 of 21) 22015 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 373-38 chr6 165991460 165991860 + 2 NA Intergenic Intergenic -3621 NR_026860 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 359-27 chr2 204766472 204766684 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 221103 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 543.5-5 chr14 59105470 59105804 + 2 NA Intergenic L1MA10|LINE|L1 -83030 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 338-4 chr1 202735402 202735654 + 2 NA exon (NM_001347591, exon 21 of 26) exon (NM_001347591, exon 21 of 26) -25074 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 231-25 chr7 5201658 5201896 + 2 NA intron (NM_016003, intron 2 of 11) intron (NM_016003, intron 2 of 11) 11544 NM_001033519 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 143 chr1 190904686 190904784 + 2 NA Intergenic Intergenic 279845 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 433-10 chr15 98660808 98661159 + 2 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -9762 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 247.5-25 chr7 80398580 80398765 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -24233 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 304-4 chr11 28607613 28607813 + 2 NA Intergenic MIRb|SINE|MIR -130165 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 485.5-7 chr2 189275681 189276069 + 2 NA Intergenic Intergenic -96114 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 266-14 chr15 53189816 53190119 + 2 NA Intergenic Intergenic 73602 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 213-15 chr5 144525365 144525546 + 2 NA Intergenic Intergenic 320064 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 212-24 chr7 30158984 30159108 + 2 NA 3' UTR (NM_152793, exon 3 of 3) 3' UTR (NM_152793, exon 3 of 3) 24060 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 351-16 chr17 34073862 34074179 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 82786 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 526-9 chr20 54171885 54172345 + 2 NA intron (NM_000782, intron 2 of 11) MamRep4096|DNA|hAT-Tip100 1871 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 194-19 chr5 24009623 24009751 + 2 NA intron (NR_131245, intron 4 of 4) L1PA15|LINE|L1 58339 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 253.5-16 chr19 10305993 10306174 + 2 NA intron (NM_001103167, intron 1 of 3) intron (NM_001103167, intron 1 of 3) 3474 NM_001103167 100125288 Hs.709296 NM_001103167 ENSG00000220201 ZGLP1 GATAD3|GLP-1|GLP1 zinc finger GATA like protein 1 protein-coding 320.5-33 chr7 72085642 72085988 + 2 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 251576 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 298-8 chr15 34720074 34720321 + 2 NA Intergenic Intergenic 34801 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 219-2 chr1 59993103 59993366 + 2 NA intron (NM_152377, intron 11 of 11) AluJb|SINE|Alu -66436 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 283.5-2 chr10 69660427 69660704 + 2 NA Intergenic Intergenic 30318 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 362.5-13 chr17 64567645 64568016 + 2 NA intron (NM_022739, intron 10 of 18) AluSx1|SINE|Alu 60853 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 310-11 chr15 62570610 62570778 + 2 NA Intergenic MER20|DNA|hAT-Charlie 74487 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 378.5-8 chr11 18069395 18069791 + 2 NA Intergenic Intergenic -28805 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 577-9 chr5 25185724 25186103 + 2 NA intron (NR_147006, intron 1 of 4) L1MA9|LINE|L1 4743 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 588-5 chr10 89461971 89462520 + 2 NA intron (NR_120614, intron 1 of 2) intron (NR_120614, intron 1 of 2) 6254 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 352-2 chr1 210616251 210616541 + 2 NA intron (NM_001122834, intron 10 of 11) intron (NM_001122834, intron 10 of 11) 287030 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 512-16 chr6 55535960 55536333 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 43068 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 157-8 chr2 203362108 203362281 + 2 NA intron (NM_001282932, intron 1 of 9) MamGypsy2-I|LTR|Gypsy -4690 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 298-23 chr5 76941623 76941831 + 2 NA Intergenic L1MC3|LINE|L1 -11318 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 395-11 chr17 13389149 13389600 + 2 NA Intergenic L1MEf|LINE|L1 -82614 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 219.5-28 chr3 147773744 147773914 + 2 NA Intergenic Intergenic -304330 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 202-10 chr2 161843911 161844098 + 2 NA intron (NM_001354443, intron 5 of 25) intron (NM_001354443, intron 5 of 25) 219588 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 444.5-23 chrX 39766854 39767166 + 2 NA Intergenic Intergenic -70551 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 396-22 chr4 69576590 69576908 + 2 NA Intergenic LTR12C|LTR|ERV1 -50735 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 348-32 chr8 79334880 79335156 + 2 NA Intergenic Intergenic 2830 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 241.5-38 chr8 126620914 126621061 + 2 NA Intergenic LTR8B|LTR|ERV1 -62509 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 571.5-5 chr4 74730500 74731111 + 2 NA Intergenic L2c|LINE|L2 63718 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 416-12 chr16 74190857 74191170 + 2 NA Intergenic L1MCc|LINE|L1 24508 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 581-4 chr11 77421579 77422104 + 2 NA intron (NM_001128620, intron 1 of 15) L3|LINE|CR1 52222 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 357-3 chr1 231966251 231966507 + 2 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 40545 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 570-20 chr6 40988939 40989352 + 2 NA intron (NR_110873, intron 1 of 5) MER33|DNA|hAT-Charlie 34135 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 383-28 chr4 172295901 172296186 + 2 NA intron (NM_001034845, intron 3 of 12) L1MEg|LINE|L1 392874 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 576 chr11 15570003 15570463 + 2 NA Intergenic Intergenic -73652 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 308-16 chr2 40755562 40755820 + 2 NA Intergenic Intergenic -243256 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 530-29 chr9 87699802 87700255 + 2 NA intron (NM_004938, intron 23 of 25) intron (NM_004938, intron 23 of 25) -26091 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 146.5-19 chr2 70903100 70903244 + 2 NA intron (NM_012476, intron 1 of 2) intron (NM_012476, intron 1 of 2) 2596 NM_012476 25806 Hs.249170 NM_012476 ENSG00000116035 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 196-6 chr15 36466689 36466919 + 2 NA Intergenic L1PB3|LINE|L1 -112822 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 371.5-4 chr1 182628765 182628997 + 2 NA Intergenic Intergenic 13741 NR_036490 284648 Hs.253475 NR_036490 ENSG00000261504 LINC01686 - long intergenic non-protein coding RNA 1686 ncRNA 212-25 chr7 125371524 125371658 + 2 NA intron (NR_110188, intron 8 of 8) intron (NR_110188, intron 8 of 8) -107300 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 202-22 chr6 130228488 130228617 + 2 NA intron (NM_001258275, intron 2 of 13) MER5B|DNA|hAT-Charlie -5601 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 243.5-13 chr16 34582180 34582391 + 2 NA Intergenic Intergenic -200805 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 123.5-6 chr15 87237293 87237401 + 2 NA Intergenic L1MA6|LINE|L1 -248921 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 361.5-4 chr12 5092825 5093233 + 2 NA Intergenic L1PA15|LINE|L1 49150 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 368.5-25 chr5 127709920 127710257 + 2 NA intron (NM_001317938, intron 2 of 6) intron (NM_001317938, intron 2 of 6) 6699 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 330-21 chr2 30380774 30381057 + 2 NA Intergenic MER74A|LTR|ERVL 34269 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 223.5-24 chr21 18481258 18481461 + 2 NA Intergenic Intergenic -77574 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 461-5 chr15 72711599 72711919 + 2 NA intron (NM_033028, intron 3 of 15) intron (NM_033028, intron 3 of 15) 25552 NM_033028 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 546-4 chr15 63554198 63554528 + 2 NA intron (NM_001256702, intron 3 of 13) intron (NM_001256702, intron 3 of 13) -43024 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 670-5 chr13 69023150 69023560 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -138030 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 379-24 chr2 133691529 133691830 + 2 NA Intergenic Intergenic -123216 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 283-46 chr8 133476490 133476690 + 2 NA 5' UTR (NM_173344, exon 4 of 10) 5' UTR (NM_173344, exon 4 of 10) 95297 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 321-7 chr13 72247758 72247990 + 2 NA Intergenic Intergenic -380670 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 281-44 chr8 91680879 91681049 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 336716 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 570-15 chr20 17342601 17343070 + 2 NA intron (NM_002594, intron 2 of 11) AluJr|SINE|Alu 115795 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 644-3 chr14 79187304 79187937 + 2 NA intron (NR_073547, intron 14 of 20) Alu|SINE|Alu -12362 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 267-32 chr3 189880917 189881155 + 2 NA 3' UTR (NM_001114982, exon 9 of 9) 3' UTR (NM_001114982, exon 9 of 9) 51114 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 412.5-12 chr16 31122785 31123285 + 2 NA intron (NM_032188, intron 3 of 10) AluSz|SINE|Alu 5371 NM_182958 84148 Hs.533803 NM_032188 ENSG00000103510 KAT8 MOF|MYST1|ZC2HC8|hMOF lysine acetyltransferase 8 protein-coding 470-15 chr14 67583202 67583561 + 2 NA intron (NM_020715, intron 24 of 28) MIR|SINE|MIR 16887 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 287-39 chr6 112590960 112591179 + 2 NA Intergenic Intergenic 243739 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 431 chr1 61384261 61384615 + 2 NA intron (NM_001134673, intron 7 of 10) intron (NM_001134673, intron 7 of 10) -130920 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 234 chr1 66205161 66205301 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -126877 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 314-15 chr17 46935772 46935983 + 2 NA 3' UTR (NM_001012511, exon 5 of 5) 3' UTR (NM_001012511, exon 5 of 5) 12717 NM_054022 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 339-13 chr18 60025198 60025509 + 2 NA Intergenic LTR106_Mam|LTR|LTR 125357 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 320-18 chr22 39823170 39823341 + 2 NA intron (NM_152512, intron 4 of 6) L1MD1|LINE|L1 70505 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 389.5-4 chr1 105301092 105301341 + 2 NA Intergenic L1M1|LINE|L1 317719 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 409.5-21 chr5 23891401 23891883 + 2 NA Intergenic ALR/Alpha|Satellite|centr -59706 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 136.5-6 chr11 88306694 88306812 + 2 NA intron (NM_001814, intron 4 of 6) LTR1B1|LTR|ERV1 30983 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 363 chr1 156716173 156716467 + 2 NA Intergenic L2|LINE|L2 -10504 NM_001199723 1382 Hs.405662 NM_001878 ENSG00000143320 CRABP2 CRABP-II|RBP6 cellular retinoic acid binding protein 2 protein-coding 529.5-25 chrX 92196328 92196864 + 2 NA intron (NM_001168362, intron 2 of 4) intron (NM_001168362, intron 2 of 4) 361135 NM_001168360 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 340.5-29 chr8 52867299 52867546 + 2 NA Intergenic L1MDa|LINE|L1 -72486 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 257-3 chr1 220051214 220051342 + 2 NA Intergenic Intergenic -4773 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 553-7 chr3 178239412 178239746 + 2 NA Intergenic L1MEb|LINE|L1 -179622 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 286.5-10 chr14 80159247 80159466 + 2 NA Intergenic Intergenic -52063 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 245-9 chr11 101692954 101693165 + 2 NA Intergenic Intergenic -109052 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 211.5-38 chr8 140534233 140534440 + 2 NA intron (NM_001164623, intron 16 of 17) intron (NM_001164623, intron 16 of 17) 22340 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 284-7 chr11 36060879 36061137 + 2 NA intron (NM_174902, intron 2 of 5) MIR|SINE|MIR 16893 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 180.5-7 chr14 65975330 65975468 + 2 NA Intergenic Intergenic 504297 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 502-18 chr6 41316769 41317290 + 2 NA Intergenic MER31-int|LTR|ERV1 -18579 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 224.5-15 chr2 30239740 30239951 + 2 NA intron (NM_030915, intron 2 of 2) intron (NM_030915, intron 2 of 2) 8311 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 628.5-7 chr3 137305938 137306577 + 2 NA Intergenic L1ME4b|LINE|L1 348274 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 257-6 chr11 76038879 76039059 + 2 NA intron (NM_003369, intron 12 of 14) MLT1E1A|LTR|ERVL-MaLR 167533 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 212.5-20 chr2 196427502 196427608 + 2 NA intron (NM_020760, intron 2 of 28) UCON105|Unknown|Unknown -65378 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 281-4 chr1 38903577 38903846 + 2 NA intron (NM_001304746, intron 4 of 7) L1MEc|LINE|L1 -22085 NR_037636 100527950 Hs.591506 NR_037633 GJA9-MYCBP Cx58|Cx59|GJA10|GJA9 GJA9-MYCBP readthrough ncRNA 393-6 chr11 59799564 59799801 + 2 NA intron (NM_004177, intron 10 of 10) intron (NM_004177, intron 10 of 10) 11096 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 371-34 chr9 80643737 80643951 + 2 NA Intergenic Intergenic 668821 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 467-4 chr10 22564865 22565168 + 2 NA intron (NM_005028, intron 6 of 9) intron (NM_005028, intron 6 of 9) -127087 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 299-22 chr3 127114313 127114493 + 2 NA Intergenic Intergenic -78728 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 215-31 chr8 85048845 85049051 + 2 NA Intergenic Intergenic -58290 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 200-4 chr10 48690077 48690292 + 2 NA intron (NM_020945, intron 1 of 61) intron (NM_020945, intron 1 of 61) 4721 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 338-20 chr2 191628603 191628929 + 2 NA Intergenic Intergenic -49306 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 318-13 chr16 52988960 52989160 + 2 NA Intergenic Intergenic 63813 NR_147075 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 385-20 chr22 27204930 27205184 + 2 NA Intergenic Intergenic 17541 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 244-7 chr15 48902949 48903170 + 2 NA intron (NM_203349, intron 2 of 11) intron (NM_203349, intron 2 of 11) 24925 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 449-7 chr11 116186375 116186707 + 2 NA Intergenic AluSx4|SINE|Alu -426341 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 478.5-27 chr8 138642428 138642703 + 2 NA intron (NM_152888, intron 47 of 64) intron (NM_152888, intron 47 of 64) -144835 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 283-3 chr1 160842285 160842471 + 2 NA intron (NM_001166664, intron 1 of 7) AluJr|SINE|Alu 20509 NM_016382 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 461-23 chr4 114726160 114726507 + 2 NA Intergenic L2c|LINE|L2 69574 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 256-16 chr21 31396025 31396187 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -51752 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 622-5 chr2 71259802 71260225 + 2 NA Intergenic Intergenic -32910 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 288-17 chr18 73502719 73502932 + 2 NA Intergenic Intergenic 177884 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 319.5-2 chr1 53454693 53454950 + 2 NA Intergenic MIR|SINE|MIR -4578 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 208.5-21 chr3 36079417 36079628 + 2 NA Intergenic Intergenic -300965 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 315-16 chr2 180753611 180753852 + 2 NA intron (NR_104324, intron 3 of 4) MLT2B3|LTR|ERVL 61627 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 308.5-18 chr2 77451854 77452041 + 2 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 70429 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 141 chr1 67754326 67754419 + 2 NA intron (NM_018841, intron 2 of 3) L2|LINE|L2 69171 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 275-41 chr8 141708811 141708994 + 2 NA Intergenic Intergenic 77411 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 289-41 chr8 29529071 29529251 + 2 NA Intergenic AluJr|SINE|Alu -178477 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 223-26 chr4 105940113 105940313 + 2 NA intron (NM_001184692, intron 6 of 10) intron (NM_001184692, intron 6 of 10) 44742 NM_001033047 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 516.5-11 chr4 83638478 83638736 + 2 NA Intergenic Intergenic 102499 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 276-33 chr3 177217380 177217603 + 2 NA Intergenic Intergenic -20009 NM_024665 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 292.5-32 chr8 101928731 101928981 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -55576 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 458-27 chr6 143890127 143890543 + 2 NA intron (NM_001013623, intron 4 of 7) L1ME2|LINE|L1 25861 NM_001013623 153918 Hs.121188 NM_001013623 ENSG00000118491 ZC2HC1B C6orf94|FAM164B|dJ468K18.5 zinc finger C2HC-type containing 1B protein-coding 422-22 chr4 69526776 69527107 + 2 NA promoter-TSS (NM_001297616) promoter-TSS (NM_001297616) -927 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 487-25 chr21 24369689 24369979 + 2 NA Intergenic Intergenic -48457 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 429.5-14 chr3 6431563 6431896 + 2 NA Intergenic MIRc|SINE|MIR 373720 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 385.5-17 chr17 13216123 13216351 + 2 NA Intergenic L1MC3|LINE|L1 90523 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 257-43 chr7 90059841 90060016 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -59472 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 290-4 chr10 108740025 108740285 + 2 NA Intergenic AluSz|SINE|Alu -670862 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 602-5 chr10 15509988 15510468 + 2 NA Intergenic Intergenic -138939 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 297-26 chr4 63458808 63459089 + 2 NA Intergenic L1ME1|LINE|L1 950502 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 382-43 chr8 114883658 114884078 + 2 NA Intergenic Intergenic 784145 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 423-10 chr15 68986101 68986632 + 2 NA intron (NR_033672, intron 2 of 16) intron (NR_033672, intron 2 of 16) -28329 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 300-14 chr22_KI270738v1_random 28686 28888 + 2 NA NA Intergenic NA NA 442.5-5 chr11 50108127 50108351 + 2 NA Intergenic L2a|LINE|L2 75365 NR_160275 403257 Hs.554533 NM_001005513 ENSG00000260811 OR4C45 - olfactory receptor family 4 subfamily C member 45 (gene/pseudogene) protein-coding 376-2 chr11 130486934 130487313 + 2 NA Intergenic Intergenic 38149 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 687-5 chr14 84521521 84522092 + 2 NA Intergenic Intergenic -750126 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 483.5-14 chr5 150041610 150041903 + 2 NA intron (NM_014983, intron 14 of 19) intron (NM_014983, intron 14 of 19) 41017 NM_014983 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 286-24 chr4 52801191 52801367 + 2 NA intron (NR_040106, intron 4 of 4) L1MC|LINE|L1 11285 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 391.5-18 chr2 61233796 61234200 + 2 NA intron (NM_014709, intron 57 of 79) L1MC5a|LINE|L1 56580 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 394-31 chrX 76605689 76605984 + 2 NA Intergenic L1MA1|LINE|L1 178126 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 334-6 chr10 48286077 48286407 + 2 NA Intergenic L2a|LINE|L2 -11546 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 251-25 chr3 85495017 85495170 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -9966 NM_001256505 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 447-25 chr7 44339801 44340100 + 2 NA Intergenic L1ME3A|LINE|L1 -14319 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 306-31 chr7 85624835 85625164 + 2 NA Intergenic L1MA3|LINE|L1 203877 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 192.5-6 chr11 78446393 78446507 + 2 NA intron (NM_024678, intron 11 of 13) intron (NM_024678, intron 11 of 13) -16614 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 265-28 chr4 31133492 31133873 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -37462 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 349-9 chr10 105028857 105029051 + 2 NA intron (NM_014978, intron 4 of 26) MER58A|DNA|hAT-Charlie -362738 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 345.5-5 chr10 63369965 63370221 + 2 NA intron (NM_001322258, intron 2 of 24) MER77B|LTR|ERVL 2955 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 317-5 chr10 42928643 42928937 + 2 NA Intergenic Intergenic 52717 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 430-39 chr8 116969038 116969380 + 2 NA intron (NM_001172811, intron 2 of 9) AluSz|SINE|Alu 18234 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 458-16 chr2 117094301 117094654 + 2 NA Intergenic MIR|SINE|MIR -720214 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 185-7 chr5 43268888 43269051 + 2 NA intron (NR_072980, intron 2 of 3) L1PB3|LINE|L1 44212 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 435-15 chr2 181539542 181539821 + 2 NA TTS (NM_000885) TTS (NM_000885) 82295 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 327-15 chr14 83532875 83533195 + 2 NA Intergenic Intergenic 890403 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 544-22 chr9 28325168 28325560 + 2 NA intron (NM_001354574, intron 4 of 5) MER67D|LTR|ERV1 393941 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 363-38 chr8 138994645 138995042 + 2 NA Intergenic ERVL-int|LTR|ERVL -80802 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 227-2 chr1 82894389 82894502 + 2 NA Intergenic Intergenic -8738 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 357-22 chr22 27494218 27494517 + 2 NA Intergenic Intergenic 183716 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 593-17 chr7 130883302 130883773 + 2 NA intron (NR_034120, intron 3 of 3) MIR|SINE|MIR -5998 NR_029517 407024 NR_029517 ENSG00000283797 MIR29B1 MIRN29B1|miR-29b|miRNA29B1|mir-29b-1 microRNA 29b-1 ncRNA 264.5-34 chr7 34307405 34307626 + 2 NA Intergenic Intergenic -350703 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 332-36 chr6 151763066 151763285 + 2 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -42498 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 401-3 chr1 76362111 76362378 + 2 NA intron (NM_001349111, intron 3 of 5) MSTA|LTR|ERVL-MaLR 287498 NM_001349105 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 402-21 chr2 176040015 176040524 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -37449 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 205-15 chr17 58101232 58101406 + 2 NA Intergenic L1MD2|LINE|L1 17900 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 562-12 chr9 37580123 37580521 + 2 NA Intergenic Intergenic -3942 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 350.5-18 chr7 124545264 124545454 + 2 NA Intergenic Intergenic -193263 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 547-5 chr14 69247815 69248216 + 2 NA Intergenic Intergenic -12143 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 285.5-21 chr5 18602107 18602274 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 794916 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 629-4 chr10 127043593 127044132 + 2 NA intron (NM_001290223, intron 21 of 51) MIR|SINE|MIR 138453 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 137-7 chr8 24945999 24946068 + 2 NA Intergenic Intergenic 7834 NR_106900 102465506 NR_106900 ENSG00000283327 MIR6841 hsa-mir-6841 microRNA 6841 ncRNA 323.5-18 chr2 219307119 219307398 + 2 NA intron (NM_001199764, intron 3 of 22) intron (NM_001199764, intron 3 of 22) 1712 NM_001199764 5798 Hs.89655 NM_002846 ENSG00000054356 PTPRN IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N protein tyrosine phosphatase receptor type N protein-coding 510-6 chr11 66712112 66712472 + 2 NA intron (NM_006946, intron 7 of 36) AluSg|SINE|Alu 9107 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 401-12 chr12 59475862 59476238 + 2 NA Intergenic LTR12|LTR|ERV1 -119979 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 450.5-9 chr2 118801484 118801750 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 46566 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 405-35 chr7 89050713 89050936 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -255087 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 315.5-30 chr4 189195751 189196026 + 2 NA Intergenic L1PA16|LINE|L1 419231 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 229-26 chr5 180364494 180364674 + 2 NA Intergenic Intergenic -11248 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 376-20 chr3 115652701 115652976 + 2 NA intron (NM_002045, intron 1 of 2) Helitron2Na_Mam|RC?|Helitron? 29328 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 542.5-21 chr4 112403646 112403952 + 2 NA intron (NM_001102406, intron 4 of 15) intron (NM_001102406, intron 4 of 15) 106430 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 376.5-27 chr6 147513695 147513895 + 2 NA intron (NM_001030060, intron 1 of 1) intron (NM_001030060, intron 1 of 1) 5105 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 358.5-31 chrX 27637959 27638160 + 2 NA intron (NM_001353450, intron 2 of 4) LTR16B2|LTR|ERVL 47715 NM_001353450 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 522-5 chr10 118740297 118740624 + 2 NA intron (NM_153810, intron 1 of 8) AluSz6|SINE|Alu 14510 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 310-9 chr14 27271685 27271864 + 2 NA Intergenic Intergenic -340814 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 239-15 chr2 104389624 104389823 + 2 NA intron (NR_037885, intron 2 of 2) AluY|SINE|Alu 18609 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 233 chr1 79730266 79730396 + 2 NA Intergenic LTR107_Mam|LTR|LTR -723601 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 259-7 chr12 47597257 47597445 + 2 NA Intergenic L1MC5a|LINE|L1 108679 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 370.5-25 chr7 41499373 41499594 + 2 NA Intergenic Intergenic -194436 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 283-36 chr5 14747081 14747309 + 2 NA intron (NM_054027, intron 6 of 11) intron (NM_054027, intron 6 of 11) 34501 NR_046285 100130744 Hs.660550 NR_046285 LOC100130744 - uncharacterized LOC100130744 ncRNA 362 chr1 115995945 115996284 + 2 NA intron (NM_018420, intron 2 of 11) L1MD1|LINE|L1 -18838 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 556-13 chr7 55123853 55124385 + 2 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 14280 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 405-37 chr8 136508427 136508674 + 2 NA Intergenic L1ME1|LINE|L1 -22248 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 509.5-17 chr8 140682216 140682792 + 2 NA intron (NM_001352743, intron 27 of 32) intron (NM_001352743, intron 27 of 32) 36065 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 452-8 chr14 85608296 85608645 + 2 NA intron (NM_001346143, intron 1 of 1) AluSz|SINE|Alu 75121 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 530-21 chr5 12342470 12342846 + 2 NA Intergenic Intergenic -232199 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 224.5-18 chr2 48829003 48829232 + 2 NA Intergenic L1PA12|LINE|L1 -73393 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 484-20 chr2 13284740 13285109 + 2 NA Intergenic LTR27C|LTR|ERV1 -277911 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 324-23 chr2 228884877 228885163 + 2 NA Intergenic Intergenic -273625 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 154.5-19 chr5 5836420 5836577 + 2 NA Intergenic MLT2B2|LTR|ERVL 413821 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 567-3 chr14 57576304 57576701 + 2 NA intron (NM_001306087, intron 4 of 7) intron (NM_001306087, intron 4 of 7) -82645 NM_001283060 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 467.5-16 chr5 16240744 16241245 + 2 NA Intergenic Intergenic 60753 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 426-20 chr20 1897033 1897306 + 2 NA intron (NM_001040023, intron 1 of 7) intron (NM_001040023, intron 1 of 7) 1762 NM_001040023 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 398-2 chr10 76920050 76920381 + 2 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 32171 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 367-7 chr10 20268199 20268619 + 2 NA intron (NM_032812, intron 13 of 13) intron (NM_032812, intron 13 of 13) -283561 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 454-19 chr3 81541523 81541776 + 2 NA intron (NM_000158, intron 12 of 15) MLT1A0|LTR|ERVL-MaLR 219996 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 339-24 chr3 68358816 68359068 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -141695 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 314-16 chr2 150879864 150880068 + 2 NA Intergenic Intergenic 251069 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 224.5-6 chr11 76364474 76364698 + 2 NA intron (NR_130898, intron 2 of 5) intron (NR_130898, intron 2 of 5) 16379 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 591.5-5 chr2 225856710 225857268 + 2 NA Intergenic AluSq2|SINE|Alu -285805 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 346-19 chr18 50228146 50228324 + 2 NA intron (NM_145020, intron 7 of 7) AluSx1|SINE|Alu -33088 NM_001080467 4645 Hs.720076 NM_001080467 ENSG00000167306 MYO5B - myosin VB protein-coding 168-7 chr2 16229810 16229983 + 2 NA Intergenic Intergenic 179469 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 411-38 chr7 103312849 103313333 + 2 NA exon (NM_001362667, exon 16 of 17) exon (NM_001362667, exon 16 of 17) 15656 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 314-43 chr9 35625701 35626009 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -7442 NM_001782 971 Hs.116481 NM_001782 ENSG00000137101 CD72 CD72b|LYB2 CD72 molecule protein-coding 486-18 chr16 13511048 13511476 + 2 NA Intergenic MER124|DNA?|DNA? -408895 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 278 chr1 41971571 41971828 + 2 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -52777 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 314.5-12 chr15 75341709 75341940 + 2 NA non-coding (NR_104312, exon 9 of 9) non-coding (NR_104312, exon 9 of 9) -5166 NM_001352519 79661 Hs.512732 NM_024608 ENSG00000140398 NEIL1 FPG1|NEI1|hFPG1 nei like DNA glycosylase 1 protein-coding 376-10 chr16 25440197 25440422 + 2 NA Intergenic AluSg|SINE|Alu -182464 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 306.5-8 chr10 118509454 118509760 + 2 NA Intergenic Intergenic 86041 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 201.5-30 chr9 33048836 33048997 + 2 NA intron (NM_018225, intron 10 of 11) L1MC1|LINE|L1 23643 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 352-16 chr2 35802844 35803276 + 2 NA Intergenic Intergenic 331655 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 419-31 chr8 119737367 119737871 + 2 NA intron (NM_003184, intron 25 of 25) AluSz|SINE|Alu -64229 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 423-21 chr2 122866906 122867140 + 2 NA Intergenic Intergenic 206458 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 268-24 chr7 25502881 25503055 + 2 NA Intergenic AluJr|SINE|Alu 160172 NR_157822 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 315-40 chr8 84067423 84067807 + 2 NA Intergenic Intergenic -115172 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 366-11 chr2 14170707 14170967 + 2 NA Intergenic Intergenic 230121 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 506-12 chr16 87087650 87088036 + 2 NA Intergenic MER41A|LTR|ERV1 30059 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 388.5-3 chr17 32257638 32258026 + 2 NA Intergenic AluSp|SINE|Alu -8000 NM_138328 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 446-30 chr5 120621442 120621760 + 2 NA intron (NM_001308088, intron 3 of 3) THE1C|LTR|ERVL-MaLR 90137 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 226-8 chr15 37049126 37049275 + 2 NA intron (NM_172316, intron 7 of 12) intron (NM_172316, intron 7 of 12) 49496 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 185.5-22 chr22 44703296 44703471 + 2 NA intron (NM_181334, intron 1 of 14) intron (NM_181334, intron 1 of 14) 1179 NM_181333 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 281-46 chrX 42602979 42603153 + 2 NA Intergenic Intergenic 175097 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 297-31 chr7 88187679 88187886 + 2 NA intron (NM_001324419, intron 30 of 31) intron (NM_001324419, intron 30 of 31) -28878 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 279-15 chr18 40310964 40311128 + 2 NA Intergenic Intergenic 244760 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 241-20 chr6 61024327 61024541 + 2 NA Intergenic SATR2|Satellite|Satellite -549696 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 301.5-24 chr8 141686488 141686791 + 2 NA Intergenic Intergenic 99674 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 250-28 chr3 82981648 82981917 + 2 NA Intergenic Intergenic 995640 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 692.5 chr11 13504707 13505230 + 2 NA Intergenic L1MC3|LINE|L1 -8793 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 489-12 chr14 60821989 60822464 + 2 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 87465 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 299-25 chr4 42666945 42667295 + 2 NA Intergenic MIRc|SINE|MIR -10015 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 435.5-3 chr12 57549827 57550373 + 2 NA promoter-TSS (NM_001354705) promoter-TSS (NM_001354705) 56 NM_004984 3798 Hs.151219 NM_004984 ENSG00000155980 KIF5A ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10 kinesin family member 5A protein-coding 582.5-4 chr18 2986090 2986534 + 2 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 25635 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 187-16 chr20 19277245 19277419 + 2 NA intron (NR_024564, intron 2 of 7) MIRb|SINE|MIR 7264 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 237.5-26 chr8 63254215 63254480 + 2 NA Intergenic MIRb|SINE|MIR 85344 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 505-7 chr12 80054494 80054788 + 2 NA Intergenic Intergenic -44896 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 123.5-14 chr7 31657111 31657172 + 2 NA TTS (NM_001257967) TTS (NM_001257967) -29876 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 240-35 chr4 105578789 105578984 + 2 NA intron (NM_001242729, intron 1 of 13) L1PB3|LINE|L1 17295 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 310-31 chr4 59842522 59842771 + 2 NA Intergenic Intergenic 829073 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 423-25 chr3 94443989 94444313 + 2 NA Intergenic L1PA13|LINE|L1 381090 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 575-16 chr8 49484316 49484734 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 27655 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 245-4 chr1 200772030 200772191 + 2 NA intron (NM_001297707, intron 2 of 17) Charlie9|DNA|hAT-Charlie 32538 NM_203459 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 338-31 chr6 40366988 40367288 + 2 NA Intergenic L1MEc|LINE|L1 -11132 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 328-15 chr14 74937167 74937444 + 2 NA Intergenic Intergenic -14045 NM_001370255 83694 Hs.414481 NM_031464 ENSG00000198208 RPS6KL1 RSKL2 ribosomal protein S6 kinase like 1 protein-coding 300-18 chr4 113985416 113985640 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -5881 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 455.5-12 chr2 119525827 119526070 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -1496 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 377 chr1 104898477 104898703 + 2 NA Intergenic L1MA5A|LINE|L1 720345 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 213-8 chr19 38017896 38018063 + 2 NA intron (NM_015073, intron 1 of 21) intron (NM_015073, intron 1 of 21) 110771 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 335-13 chr14 53838936 53839177 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 109428 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 417.5-7 chr2 126751130 126751444 + 2 NA Intergenic Intergenic 95129 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 412-36 chrX 42962767 42963046 + 2 NA Intergenic LTR49-int|LTR|ERV1 -184743 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 480.5 chr14 38477676 38477962 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -221726 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 422-24 chr5 146813488 146813861 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 65111 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 433-28 chr6 143620675 143621031 + 2 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) 12673 NM_014721 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 272-11 chr15 33720737 33720973 + 2 NA intron (NM_001243996, intron 43 of 102) AluJb|SINE|Alu -247642 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 449.5 chr1 112135637 112135941 + 2 NA Intergenic Intergenic 145253 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 286.5-22 chr21 24343693 24343865 + 2 NA Intergenic Intergenic -22402 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 433-33 chr9 88456187 88456583 + 2 NA intron (NM_006717, intron 3 of 5) intron (NM_006717, intron 3 of 5) 67941 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 272.5-32 chr6 126305040 126305239 + 2 NA Intergenic Intergenic -34650 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 417-26 chr20 46558827 46559205 + 2 NA 3' UTR (NM_022829, exon 13 of 13) 3' UTR (NM_022829, exon 13 of 13) -8362 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 417.5-6 chr2 98696946 98697361 + 2 NA intron (NM_012214, intron 2 of 15) L1MDa|LINE|L1 -33680 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 295-37 chr4 108634139 108634344 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 13612 NM_001319234 6164 Hs.438227 NM_000995 ENSG00000109475 RPL34 L34 ribosomal protein L34 protein-coding 267-13 chr16 28025061 28025284 + 2 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) 38542 NM_001323901 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 467-14 chr19 37389452 37389782 + 2 NA exon (NM_032453, exon 5 of 5) exon (NM_032453, exon 5 of 5) 18518 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 419-25 chr5 12392280 12392544 + 2 NA Intergenic HERV16-int|LTR|ERVL -182445 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 195-9 chr15 78370662 78370783 + 2 NA Intergenic FAM|SINE|Alu 30369 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 286.5-23 chr22 27704488 27704761 + 2 NA Intergenic Intergenic 97132 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 294.5-2 chr1 44590435 44590760 + 2 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 45104 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 292-23 chr3 10283880 10284078 + 2 NA promoter-TSS (NR_026829) promoter-TSS (NR_026829) -440 NR_026829 84657 Hs.302131 NM_001039102 ENSG00000231177 LINC00852 C3orf42|GHRL-AS2|GHRLOS2|NAG73 long intergenic non-protein coding RNA 852 ncRNA 272-10 chr14 70805480 70805753 + 2 NA intron (NM_033141, intron 1 of 12) intron (NM_033141, intron 1 of 12) 3555 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 201-15 chr21 21027341 21027492 + 2 NA intron (NM_001352595, intron 1 of 14) L2c|LINE|L2 29007 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 272-42 chr9 129368141 129368366 + 2 NA Intergenic L1MC|LINE|L1 31330 NR_120686 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 387-16 chr18 22570150 22570521 + 2 NA Intergenic HAL1|LINE|L1 -152420 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 174-18 chr21 31024051 31024209 + 2 NA Intergenic Intergenic 14346 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 289-17 chr15 68911678 68911878 + 2 NA Intergenic AluSx|SINE|Alu -18722 NR_033671 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 199.5-39 chrX 51750080 51750304 + 2 NA Intergenic AluSq2|SINE|Alu 6750 NM_018094 23708 Hs.59523 NM_018094 ENSG00000189369 GSPT2 ERF3B|GST2 G1 to S phase transition 2 protein-coding 494-5 chr12 14872769 14873174 + 2 NA Intergenic Intergenic 12883 NM_001190839 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 435-3 chr1 235773064 235773342 + 2 NA intron (NM_000081, intron 19 of 52) AluSz|SINE|Alu 79857 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 431.5-2 chr1 243895264 243895578 + 2 NA Intergenic Intergenic -21981 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 368.5 chr1 98560692 98560960 + 2 NA Intergenic L1MEc|LINE|L1 -100895 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 581-19 chr8 83718453 83718982 + 2 NA Intergenic Intergenic 314959 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 307.5-36 chr7 47251455 47251642 + 2 NA Intergenic L1ME1|LINE|L1 213255 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 234-20 chr4 154931178 154931352 + 2 NA Intergenic L1MA9|LINE|L1 149760 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 472-10 chr2 215379172 215379627 + 2 NA intron (NM_212476, intron 31 of 43) intron (NM_212476, intron 31 of 43) 56669 NM_001365518 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 423.5-22 chr3 146151104 146151315 + 2 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 9975 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 497-18 chr8 120862838 120863489 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -51117 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 227-17 chr16 80451400 80451590 + 2 NA intron (NR_120307, intron 2 of 5) MARNA|DNA|TcMar-Mariner -89239 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 178.5-11 chr20 13833134 13833321 + 2 NA Intergenic Intergenic 48199 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 544-9 chr3 111772835 111773338 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 40590 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 511-23 chr5 127430688 127431240 + 2 NA intron (NM_001256545, intron 13 of 24) intron (NM_001256545, intron 13 of 24) -86676 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 264-8 chr15 78823991 78824183 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -12623 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 264-24 chr6 43744888 43745105 + 2 NA Intergenic Intergenic -25213 NM_001171628 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 241.5-20 chr2 230134744 230134925 + 2 NA Intergenic Intergenic -65910 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 384.5-20 chr5 86030741 86031158 + 2 NA Intergenic Intergenic -251495 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 487-5 chr10 62435624 62436029 + 2 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -60699 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 325-36 chr9 27095538 27095797 + 2 NA Intergenic L2|LINE|L2 -13474 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 345-18 chr19 48114595 48114797 + 2 NA TTS (NR_135499) TTS (NR_135499) -3844 NM_001159322 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 418-6 chr12 10523667 10524042 + 2 NA TTS (NM_001357731) TTS (NM_001357731) 17961 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 281-43 chr8 86832117 86832388 + 2 NA Intergenic Intergenic -34163 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 261-31 chr9 113868370 113868681 + 2 NA Intergenic L1MC4|LINE|L1 -7757 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 542.5-26 chr7 26055791 26056408 + 2 NA Intergenic Intergenic -96099 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 295-42 chr6 168418646 168418823 + 2 NA Intergenic Intergenic -22450 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 310-38 chr7 92461119 92461404 + 2 NA Intergenic MLT2F|LTR|ERVL 10163 NM_014590 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 460-16 chr3 79674076 79674419 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 93751 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 332.5-22 chr8 124896288 124896694 + 2 NA Intergenic Intergenic -45517 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 293-26 chr6 41829146 41829409 + 2 NA intron (NM_001286554, intron 1 of 5) L1M5|LINE|L1 41834 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 304-9 chr14 87972156 87972401 + 2 NA intron (NM_000153, intron 7 of 16) L1ME3A|LINE|L1 20904 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 435-18 chr3 31924871 31925230 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -56700 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 439-7 chr2 172762830 172763387 + 2 NA intron (NM_007023, intron 1 of 30) intron (NM_007023, intron 1 of 30) -26902 NR_026995 91149 Hs.711021 NR_026995 ENSG00000228016 RAPGEF4-AS1 - RAPGEF4 antisense RNA 1 ncRNA 194-7 chr17 80511739 80511865 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -33036 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 231-2 chr1 114606633 114606844 + 2 NA intron (NM_001256404, intron 10 of 20) MER45C|DNA|hAT-Tip100 -25123 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 345.5-31 chr7 92522023 92522315 + 2 NA exon (NM_000466, exon 2 of 24) exon (NM_000466, exon 2 of 24) 6351 NM_000466 5189 Hs.164682 NM_000466 ENSG00000127980 PEX1 HMLR1|PBD1A|PBD1B|ZWS|ZWS1 peroxisomal biogenesis factor 1 protein-coding 295.5-23 chr5 54001007 54001231 + 2 NA intron (NM_019087, intron 4 of 4) MER45C|DNA|hAT-Tip100 -49520 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 402-19 chr2 47270454 47270701 + 2 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -64738 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 228.5-32 chr8 91491286 91491472 + 2 NA Intergenic Intergenic 242060 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 164-6 chr14 95314712 95314841 + 2 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 5132 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 562.5-11 chr16 35480252 35481000 + 2 NA promoter-TSS (NR_026980) promoter-TSS (NR_026980) -30 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 286.5-24 chr4 44944952 44945177 + 2 NA Intergenic Intergenic -218430 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 231.5-36 chr8 134931585 134931849 + 2 NA Intergenic Intergenic 81782 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 426.5-28 chr8 107118325 107118654 + 2 NA Intergenic L1ME3D|LINE|L1 218026 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 387.5-16 chr20 34995876 34996113 + 2 NA intron (NM_020884, intron 28 of 44) intron (NM_020884, intron 28 of 44) -5522 NR_039912 100616134 NR_039912 ENSG00000283441 MIR499B MIR499A|hsa-mir-499b microRNA 499b ncRNA 463-24 chr6 54380770 54381093 + 2 NA intron (NM_014464, intron 10 of 10) (TA)n|Simple_repeat|Simple_repeat 72490 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 311-27 chr7 13254286 13254441 + 2 NA Intergenic Intergenic 566730 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 397.5-26 chr4 151727418 151727774 + 2 NA intron (NM_001363341, intron 2 of 11) intron (NM_001363341, intron 2 of 11) 33411 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 590.5-8 chr11 86131108 86131513 + 2 NA Intergenic L2c|LINE|L2 -61450 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 316-12 chr15 55548770 55548930 + 2 NA intron (NM_001367806, intron 2 of 2) intron (NM_001367806, intron 2 of 2) 39495 NM_001330326 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 188.5-12 chr2 73381440 73381534 + 2 NA Intergenic AluJb|SINE|Alu -4271 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 305.5-33 chr6 111900118 111900320 + 2 NA TTS (NR_149099) TTS (NR_149099) 9178 NR_149099 105377946 NR_149099 LINC02527 - long intergenic non-protein coding RNA 2527 ncRNA 376.5-14 chr2 75804001 75804312 + 2 NA Intergenic L2|LINE|L2 -93241 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 263-28 chrX 73753340 73753521 + 2 NA Intergenic L1MA9|LINE|L1 -38775 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 649-10 chr5 64902526 64902932 + 2 NA intron (NM_005869, intron 11 of 13) L1ME1|LINE|L1 133799 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 663-2 chr1 194738008 194738660 + 2 NA Intergenic Intergenic 1350381 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 622-8 chr21 26807242 26807784 + 2 NA Intergenic Intergenic 37896 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 608-7 chr17 30320754 30321256 + 2 NA intron (NM_206832, intron 4 of 6) AluSz|SINE|Alu 13052 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 342-2 chr1 109517214 109517428 + 2 NA Intergenic Intergenic -7594 NM_020703 57463 Hs.12264 NM_020703 ENSG00000181754 AMIGO1 ALI2|AMIGO|AMIGO-1 adhesion molecule with Ig like domain 1 protein-coding 516.5-9 chr3 44722125 44722383 + 2 NA exon (NM_001134442, exon 3 of 3) exon (NM_001134442, exon 3 of 3) -7352 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 545.5 chr10 97380849 97381516 + 2 NA intron (NM_001145114, intron 10 of 31) intron (NM_001145114, intron 10 of 31) 20158 NM_015179 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 519-14 chr5 158773166 158773464 + 2 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) 324641 NM_001364156 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 699.5-8 chr4 47490463 47491165 + 2 NA intron (NM_020453, intron 1 of 22) intron (NM_020453, intron 1 of 22) 5539 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 174.5-5 chr10 101296976 101297117 + 2 NA Intergenic Intergenic -33496 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 443-15 chr2 50106216 50106641 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -132225 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 287-28 chr3 136859378 136859641 + 2 NA intron (NR_110175, intron 1 of 3) intron (NR_110175, intron 1 of 3) 2554 NR_110177 101927597 Hs.559587 NR_110175 NCK1-DT NCK1-AS1|SLC35G2-AS1 NCK1 divergent transcript ncRNA 285.5-28 chr6 111218888 111219189 + 2 NA exon (NM_018593, exon 5 of 6) exon (NM_018593, exon 5 of 6) -40301 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 202-23 chr6 150257730 150257890 + 2 NA Intergenic Intergenic -111202 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 208.5-16 chr2 224846111 224846290 + 2 NA intron (NM_001290263, intron 19 of 55) intron (NM_001290263, intron 19 of 55) 100849 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 249-13 chr17 59118589 59118836 + 2 NA intron (NM_001100595, intron 2 of 2) L3|LINE|CR1 -11832 NM_001320988 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 343-12 chr16 72293992 72294285 + 2 NA intron (NR_126330, intron 9 of 13) MIR3|SINE|MIR -121688 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 307-6 chr11 55057864 55058138 + 2 NA Intergenic ALR/Alpha|Satellite|centr -204154 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 483.5-2 chr10 81864773 81865054 + 2 NA Intergenic Intergenic -10281 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 364-17 chr17 60912241 60912515 + 2 NA intron (NM_001330413, intron 12 of 25) intron (NM_001330413, intron 12 of 25) 234527 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 396-3 chr10 20712417 20712670 + 2 NA Intergenic AluSz6|SINE|Alu 160573 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 467-25 chr8 29067242 29067576 + 2 NA 3' UTR (NM_015254, exon 40 of 40) 3' UTR (NM_015254, exon 40 of 40) 176095 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 376-4 chr14 61871833 61872183 + 2 NA intron (NM_001367656, intron 1 of 7) MIRb|SINE|MIR -55687 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 243-8 chr11 110876431 110876622 + 2 NA Intergenic L3|LINE|CR1 -163337 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 545-14 chr2 28906656 28907031 + 2 NA intron (NM_015131, intron 3 of 17) intron (NM_015131, intron 3 of 17) -6819 NR_003074 692209 NR_003074 ENSG00000264994 SNORD92 HBII-316 small nucleolar RNA, C/D box 92 snoRNA 329.5-23 chr8 88752866 88753166 + 2 NA Intergenic Intergenic -425533 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 456-18 chr22 19248692 19249053 + 2 NA intron (NM_007098, intron 3 of 32) L1MB8|LINE|L1 42847 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 187-8 chr15 38413402 38413575 + 2 NA Intergenic L1PA17|LINE|L1 -40639 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 465-26 chr2 135621553 135621944 + 2 NA intron (NM_001282798, intron 6 of 25) intron (NM_001282798, intron 6 of 25) 35396 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 284-21 chr2 192343501 192343683 + 2 NA Intergenic L1MC1|LINE|L1 -148659 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 307-32 chr6 74269897 74270105 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 200550 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 290-30 chr7 7876897 7877107 + 2 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 91750 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 251-18 chr2 80292279 80292462 + 2 NA intron (NM_001282598, intron 7 of 17) MIR|SINE|MIR 12382 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 308-8 chr14 26100783 26100999 + 2 NA Intergenic Intergenic 452539 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 557-8 chr15 37495501 37495881 + 2 NA Intergenic L1MC1|LINE|L1 -394380 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 384-28 chr8 92052610 92052857 + 2 NA intron (NM_001198633, intron 1 of 10) MER5A|DNA|hAT-Charlie 9901 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 371-5 chr15 64717139 64717404 + 2 NA Intergenic Intergenic -13990 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 237-13 chr20 14944816 14945043 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -15411 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 482.5-8 chr2 27367556 27367822 + 2 NA intron (NM_015636, intron 8 of 12) intron (NM_015636, intron 8 of 12) 2363 NM_172195 8890 Hs.169474 NM_015636 ENSG00000115211 EIF2B4 EIF-2B|EIF2B|EIF2Bdelta eukaryotic translation initiation factor 2B subunit delta protein-coding 226.5-19 chr4 86850847 86851009 + 2 NA Intergenic Intergenic -1544 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 315.5-17 chr2 52046262 52046542 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -324246 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 259.5-46 chr8 130937524 130937739 + 2 NA intron (NM_001115, intron 4 of 17) intron (NM_001115, intron 4 of 17) 103278 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 527-8 chr11 69015500 69015930 + 2 NA non-coding (NR_120541, exon 5 of 6) non-coding (NR_120541, exon 5 of 6) -2333 NM_001098515 116535 Hs.118513 NM_145015 ENSG00000172935 MRGPRF GPR140|GPR168|MRGF|RTA MAS related GPR family member F protein-coding 408.5-18 chr4 130966828 130967124 + 2 NA Intergenic AluSx3|SINE|Alu 590615 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 262-24 chr5 2256072 2256301 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 56015 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 247.5-26 chr7 91618193 91618363 + 2 NA Intergenic L1ME3G|LINE|L1 262424 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 408-19 chr19 31000819 31001083 + 2 NA Intergenic L2|LINE|L2 -166559 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 429-15 chr19 28224122 28224668 + 2 NA Intergenic Intergenic -382293 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 286.5-34 chr8 93824387 93824629 + 2 NA Intergenic Intergenic 69614 NR_024522 91147 Hs.116240 NM_153704 ENSG00000164953 TMEM67 JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 transmembrane protein 67 protein-coding 315-12 chr12 53247056 53247323 + 2 NA Intergenic Intergenic -4397 NM_001170790 84975 Hs.654660 NM_032889 ENSG00000182544 MFSD5 hsMOT2 major facilitator superfamily domain containing 5 protein-coding 289.5-13 chr11 79746032 79746421 + 2 NA Intergenic Intergenic -305196 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 525.5-15 chr6 123879731 123880061 + 2 NA intron (NM_001040214, intron 1 of 6) MER54B|LTR|ERVL 76031 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 203-18 chr3 111953554 111953683 + 2 NA intron (NM_001134437, intron 11 of 17) intron (NM_001134437, intron 11 of 17) -25408 NM_018394 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 524-17 chr4 58172101 58172473 + 2 NA Intergenic AluY|SINE|Alu 364041 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 403.5 chr1 18208569 18208997 + 2 NA intron (NM_032880, intron 1 of 9) L1ME3|LINE|L1 100985 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 281-8 chr11 109261245 109261485 + 2 NA Intergenic L1MA10|LINE|L1 -160825 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 393.5-10 chr18 2040738 2041034 + 2 NA Intergenic Intergenic 530619 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 343-15 chr18 6993667 6993995 + 2 NA intron (NM_005559, intron 34 of 62) intron (NM_005559, intron 34 of 62) 39154 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 268-20 chr5 179392627 179392880 + 2 NA Intergenic L1ME2|LINE|L1 -47292 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 402.5-12 chr18 22361136 22361559 + 2 NA Intergenic MER117|DNA|hAT-Charlie 56568 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 233-16 chr2 127390888 127391087 + 2 NA Intergenic L2c|LINE|L2 -27433 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 341.5-26 chr4 70124491 70124910 + 2 NA Intergenic L1MA8|LINE|L1 -8904 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 322-14 chr2 108199359 108199597 + 2 NA intron (NR_131251, intron 1 of 4) AluJb|SINE|Alu 18363 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 408-41 chr8 84064448 84064811 + 2 NA Intergenic Intergenic -118158 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 210.5-7 chr14 52343741 52343918 + 2 NA Intergenic L1M5|LINE|L1 29517 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 379-4 chr1 168656014 168656349 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 73025 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 473-18 chr4 81868356 81868940 + 2 NA Intergenic Intergenic -396741 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 431-9 chr14 47739585 47739836 + 2 NA Intergenic Intergenic 21394 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 729-8 chr5 36884422 36885026 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 7955 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 308.5-23 chr4 67155077 67155389 + 2 NA Intergenic Intergenic 266767 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 256.5-15 chr2 4623839 4624016 + 2 NA Intergenic Intergenic 32295 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 224-13 chr18 45536052 45536186 + 2 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -29083 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 335-52 chr8 137887142 137887394 + 2 NA intron (NR_161374, intron 2 of 7) AluSc|SINE|Alu 196277 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 509-21 chr7 137128855 137129282 + 2 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 35273 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 467-21 chr6 113296904 113297324 + 2 NA Intergenic L2a|LINE|L2 136333 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 438-22 chr22 43447680 43448069 + 2 NA intron (NM_001362786, intron 3 of 6) (TA)n|Simple_repeat|Simple_repeat 31322 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 889.5-2 chr21 21860034 21860926 + 2 NA Intergenic Intergenic 113495 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 458-23 chr4 96814223 96814498 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 503657 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 150 chr12 15729267 15729418 + 2 NA intron (NM_004447, intron 1 of 20) L1MCa|LINE|L1 60046 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 173.5-3 chr1 115873713 115873799 + 2 NA Intergenic MER20|DNA|hAT-Charlie -32630 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 528-30 chr5 143684518 143684922 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 4860 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 380-17 chr5 58094958 58095182 + 2 NA Intergenic Intergenic 27271 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 300-19 chr5 9404317 9404715 + 2 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -106817 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 644-5 chr2 37679268 37679778 + 2 NA Intergenic Intergenic -6988 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 217-20 chr5 145786704 145786843 + 2 NA intron (NM_205846, intron 5 of 6) intron (NM_205846, intron 5 of 6) 48569 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 331.5-25 chr8 33538731 33539031 + 2 NA Intergenic AluJo|SINE|Alu 25406 NR_003041 692084 NR_003041 ENSG00000239039 SNORD13 RNU13|SNORD13A|U13 small nucleolar RNA, C/D box 13 snoRNA 219-9 chr12 23106032 23106142 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -69549 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 314-11 chr14 95674154 95674340 + 2 NA TTS (NR_028288) TTS (NR_028288) -12179 NM_004918 9623 Hs.632346 NM_004918 ENSG00000213231 TCL1B SYN-1|TML1 T cell leukemia/lymphoma 1B protein-coding 415-10 chr11 109486883 109487219 + 2 NA Intergenic Intergenic 64861 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 451-26 chr8 118203869 118204126 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -92178 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 676.5-7 chr20 12577147 12577568 + 2 NA Intergenic L1MC3|LINE|L1 359606 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 434.5-15 chr5 163452038 163452487 + 2 NA non-coding (NR_138426, exon 4 of 4) non-coding (NR_138426, exon 4 of 4) 7840 NR_138427 134492 Hs.140443 NM_145266 ENSG00000170584 NUDCD2 NudCL2 NudC domain containing 2 protein-coding 217-21 chr6 34902825 34903021 + 2 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 13668 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 377.5-19 chr8 115116620 115117014 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 551196 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 496-5 chr12 74775835 74776261 + 2 NA Intergenic AluSz|SINE|Alu 238213 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 449-17 chr2 221327762 221328139 + 2 NA Intergenic Intergenic 244354 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 340-27 chr22 27856227 27856498 + 2 NA intron (NM_001284278, intron 10 of 11) intron (NM_001284278, intron 10 of 11) -54606 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 372-3 chr1 163901824 163902125 + 2 NA Intergenic L1MB8|LINE|L1 -478783 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 436.5-3 chr10 123137272 123137669 + 2 NA exon (NM_001105574, exon 2 of 2) exon (NM_001105574, exon 2 of 2) 1500 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 334-22 chr4 115756734 115757063 + 2 NA Intergenic Intergenic -542827 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 131-9 chr9 76845018 76845083 + 2 NA intron (NM_001308048, intron 4 of 17) intron (NM_001308048, intron 4 of 17) 61037 NM_001308047 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 184.5-24 chr7 42567094 42567249 + 2 NA Intergenic Intergenic 139276 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 523-26 chr7 38024598 38024984 + 2 NA Intergenic L1MCb|LINE|L1 103472 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 128.5-16 chr2 54721206 54721303 + 2 NA Intergenic Intergenic -3758 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 240-49 chr9 98703483 98703797 + 2 NA intron (NM_005458, intron 1 of 18) AluJr|SINE|Alu 5295 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 328-35 chr8 141748812 141749071 + 2 NA Intergenic L1ME1|LINE|L1 37372 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 248-7 chr16 63009870 63010053 + 2 NA Intergenic AluJb|SINE|Alu -973523 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 310.5-35 chr5 38622141 38622384 + 2 NA intron (NR_103554, intron 2 of 8) intron (NR_103554, intron 2 of 8) -26857 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 322-18 chr7 92647499 92647749 + 2 NA intron (NM_001259, intron 5 of 7) L2a|LINE|L2 -57234 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 398.5-18 chr4 154350433 154350797 + 2 NA intron (NM_001358235, intron 3 of 19) intron (NM_001358235, intron 3 of 19) 141184 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 351.5-20 chr5 172304070 172304366 + 2 NA Intergenic AluSq2|SINE|Alu 18621 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 385-11 chr14 86263026 86263243 + 2 NA Intergenic Intergenic 328456 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 362-31 chr8 23747658 23747920 + 2 NA Intergenic Intergenic -41191 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 373-22 chr2 33340311 33340583 + 2 NA intron (NM_001166264, intron 20 of 28) intron (NM_001166264, intron 20 of 28) -78069 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 255.5-29 chrX 14440988 14441225 + 2 NA Intergenic Intergenic -88192 NM_001118885 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 341.5-16 chr2 113990514 113990728 + 2 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -10637 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 235-36 chr8 112606625 112606774 + 2 NA intron (NM_001363185, intron 20 of 66) L1MA9|LINE|L1 -36794 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 634-12 chr8 123547237 123547848 + 2 NA Intergenic Intergenic -6336 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 190-8 chr2 200257443 200257588 + 2 NA Intergenic Intergenic -48364 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 257-9 chr13 33198964 33199127 + 2 NA intron (NM_001243476, intron 5 of 17) L2c|LINE|L2 6979 NM_052851 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 441-39 chr8 112619066 112619328 + 2 NA intron (NM_001363185, intron 20 of 66) L2|LINE|L2 -24296 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 373-28 chr21 25468963 25469328 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -37444 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 379-2 chr1 149926938 149927238 + 2 NA intron (NM_005850, intron 2 of 5) intron (NM_005850, intron 2 of 5) 715 NM_005850 10262 Hs.516160 NM_005850 ENSG00000143368 SF3B4 AFD1|Hsh49|SAP49|SF3b49 splicing factor 3b subunit 4 protein-coding 302.5-7 chr10 114400678 114400996 + 2 NA intron (NM_001351068, intron 1 of 19) MER5B|DNA|hAT-Charlie 3665 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 558.5-2 chr1 159763118 159763550 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -17628 NM_017823 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 204-13 chr2 142398487 142398655 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -266870 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 589-12 chr3 180822259 180822701 + 2 NA intron (NR_109986, intron 2 of 13) L1PA15|LINE|L1 47698 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 268-7 chr16 71338906 71339135 + 2 NA Intergenic Intergenic -19693 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 453.5-11 chr22 29593061 29593436 + 2 NA Intergenic AluJb|SINE|Alu -10308 NM_181833 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 210.5-14 chr20 55175916 55176139 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -247016 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 213-14 chr4 90063403 90063600 + 2 NA Intergenic Intergenic -64032 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 227-19 chr2 100617292 100617466 + 2 NA Intergenic Intergenic 13640 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 320.5-15 chr2 23799162 23799373 + 2 NA intron (NR_125717, intron 19 of 28) intron (NR_125717, intron 19 of 28) 127856 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 330.5-26 chr3 144174254 144174459 + 2 NA Intergenic L1MC5|LINE|L1 201275 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 218.5-12 chr15 101724947 101725135 + 2 NA promoter-TSS (NM_152334) promoter-TSS (NM_152334) -568 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 404-2 chr1 117364906 117365258 + 2 NA Intergenic Intergenic -2367 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 300-27 chr7 1933207 1933458 + 2 NA intron (NM_001013837, intron 17 of 18) HAL1|LINE|L1 7239 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 205.5-32 chr8 30026612 30026756 + 2 NA Intergenic L1MB5|LINE|L1 56380 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 718-3 chr6 165190509 165190988 + 2 NA Intergenic L1MC4|LINE|L1 118857 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 578-3 chr10 33224301 33224772 + 2 NA intron (NM_001244973, intron 7 of 16) intron (NM_001244973, intron 7 of 16) -107729 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 268-15 chr22 43121546 43121746 + 2 NA intron (NM_001197, intron 1 of 4) intron (NM_001197, intron 1 of 4) 10896 NM_001197 638 Hs.475055 NM_001197 ENSG00000100290 BIK BIP1|BP4|NBK BCL2 interacting killer protein-coding 297-28 chr5 131913657 131913917 + 2 NA intron (NM_001303622, intron 7 of 12) intron (NM_001303622, intron 7 of 12) 31876 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 409.5-2 chr11 88519412 88519639 + 2 NA intron (NR_049724, intron 4 of 5) intron (NR_049724, intron 4 of 5) 14949 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 307-25 chr22 39572344 39572542 + 2 NA intron (NM_001003406, intron 1 of 35) intron (NM_001003406, intron 1 of 35) 1690 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 307-26 chr3 4858893 4859099 + 2 NA Intergenic L1MB1|LINE|L1 47505 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 323.5-29 chr8 123973748 123973946 + 2 NA intron (NM_001039112, intron 7 of 40) MIR|SINE|MIR 66935 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 262-14 chr14 62825861 62826035 + 2 NA intron (NM_139318, intron 8 of 10) L1MC4|LINE|L1 219510 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 523-25 chr6 102349649 102350045 + 2 NA Intergenic L1ME3|LINE|L1 950862 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 263.5-28 chr8 122623729 122623927 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -55184 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 145.5-13 chr15 54217400 54217527 + 2 NA intron (NM_001329919, intron 4 of 31) intron (NM_001329919, intron 4 of 31) 204815 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 276-8 chr1 180373317 180373470 + 2 NA intron (NM_032360, intron 6 of 7) intron (NM_032360, intron 6 of 7) 64997 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 174-20 chr3 103954577 103954698 + 2 NA Intergenic Intergenic -430521 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 233-3 chr10 35417104 35417261 + 2 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 80308 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 178-6 chr10 36761845 36762011 + 2 NA Intergenic Intergenic -363929 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 358-31 chr3 106922183 106922377 + 2 NA Intergenic L1ME3E|LINE|L1 318358 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 501.5-5 chr11 68231952 68232252 + 2 NA Intergenic AluSc|SINE|Alu -18454 NM_001300908 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 389-37 chr5 74019365 74019655 + 2 NA Intergenic Intergenic 205964 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 334.5-19 chr3 56155041 56155208 + 2 NA intron (NR_132749, intron 4 of 17) intron (NR_132749, intron 4 of 17) -302530 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 643-12 chr4 72808943 72809406 + 2 NA Intergenic L1MD1|LINE|L1 -239953 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 373.5-26 chr7 41825910 41826175 + 2 NA Intergenic Intergenic -122952 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 250-31 chr4 62040935 62041113 + 2 NA intron (NM_001371343, intron 22 of 23) L2a|LINE|L2 120741 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 467.5-13 chr3 20583147 20583439 + 2 NA Intergenic Intergenic 240825 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 221.5-20 chr5 23889950 23890072 + 2 NA Intergenic ALR/Alpha|Satellite|centr -61337 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 468-39 chr6 33777859 33778186 + 2 NA intron (NM_181336, intron 6 of 8) intron (NM_181336, intron 6 of 8) 8920 NM_001143944 221496 Hs.444845 NM_181336 ENSG00000161904 LEMD2 CTRCT42|LEM2|NET25|dJ482C21.1 LEM domain containing 2 protein-coding 417 chr1 69050659 69051058 + 2 NA Intergenic Intergenic -5040 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 344 chr1 31626135 31626430 + 2 NA intron (NM_001525, intron 8 of 8) MIR1_Amn|SINE|MIR 8582 NM_001525 3061 Hs.388226 NM_001525 ENSG00000121764 HCRTR1 OX1R hypocretin receptor 1 protein-coding 606-11 chr6 158736029 158736452 + 2 NA intron (NM_001242394, intron 11 of 17) AluY|SINE|Alu 28513 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 537-11 chr2 41692474 41692791 + 2 NA Intergenic MIR|SINE|MIR -184923 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 265-18 chr2 8766022 8766266 + 2 NA intron (NM_001348745, intron 22 of 22) L2a|LINE|L2 71469 NR_145964 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 301-30 chr3 169098677 169098841 + 2 NA intron (NM_001163999, intron 10 of 14) FLAM_C|SINE|Alu 46764 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 289.5-14 chr11 103296244 103296388 + 2 NA intron (NM_001377, intron 75 of 88) intron (NM_001377, intron 75 of 88) 186890 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 294-20 chr2 36652074 36652278 + 2 NA Intergenic L1MC4|LINE|L1 -44514 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 298.5-20 chr5 37630962 37631121 + 2 NA intron (NM_001345998, intron 10 of 17) L1MA5A|LINE|L1 203781 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 864.5-4 chr4 38379839 38380630 + 2 NA intron (NR_149123, intron 1 of 1) MamTip2|DNA|hAT-Tip100 13320 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 314-39 chr7 85178147 85178388 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -56336 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 320-31 chr7 90996184 90996580 + 2 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -268051 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 335-28 chr2 125592094 125592383 + 2 NA Intergenic Tigger17c|DNA|TcMar-Tigger 525747 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 246-3 chr1 113825379 113825511 + 2 NA intron (NM_012411, intron 16 of 18) AluJo|SINE|Alu 12833 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 336-8 chr10 76598676 76598878 + 2 NA Intergenic MLT2C1|LTR|ERVL -289267 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 169-9 chr2 70970760 70970874 + 2 NA Intergenic L1MB8|LINE|L1 -7628 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 653-4 chr15 98780271 98780829 + 2 NA intron (NM_000875, intron 2 of 20) AluSp|SINE|Alu -3876 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 230-8 chr13 67694765 67694893 + 2 NA Intergenic Intergenic 322442 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 284-25 chr3 143031679 143031890 + 2 NA intron (NM_001080415, intron 16 of 27) intron (NM_001080415, intron 16 of 27) 30214 NM_001080415 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 200-19 chr6 143709143 143709297 + 2 NA intron (NM_001100165, intron 1 of 11) intron (NM_001100165, intron 1 of 11) 31255 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 224-7 chr15 58828310 58828459 + 2 NA intron (NM_001040450, intron 5 of 8) intron (NM_001040450, intron 5 of 8) 57082 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 470-11 chr12 74592136 74592414 + 2 NA Intergenic Intergenic 54440 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 510-13 chr2 119063944 119064285 + 2 NA Intergenic MIRb|SINE|MIR 94637 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 414-19 chr2 102543139 102543562 + 2 NA Intergenic Intergenic 70124 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 216-4 chr11 114940128 114940279 + 2 NA Intergenic LTR85a|LTR|Gypsy? 261676 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 208-2 chr1 175944566 175944820 + 2 NA TTS (NM_001001740) TTS (NM_001001740) 23786 NR_162097 113839518 NR_162097 MIR1843 - microRNA 1843 ncRNA 428.5-11 chr14 51229429 51229826 + 2 NA Intergenic Intergenic -10620 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 427.5-29 chr8 118052128 118052491 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 59510 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 216.5-2 chr1 115463740 115463885 + 2 NA Intergenic L2b|LINE|L2 -125576 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 295-21 chr2 4103621 4103832 + 2 NA Intergenic Intergenic 129565 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 319-16 chr18 13172919 13173195 + 2 NA Intergenic FLAM_C|SINE|Alu -45703 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 451-15 chr17 70625728 70626146 + 2 NA Intergenic Intergenic 456402 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 430.5-14 chr2 40591208 40591590 + 2 NA Intergenic Intergenic -78964 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 339-17 chr2 89776070 89776276 + 2 NA Intergenic Intergenic -138266 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 119-2 chr20 14073446 14073553 + 2 NA intron (NM_001351663, intron 2 of 17) LTR37A|LTR|ERV1 77983 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 413-8 chr10 77453382 77453734 + 2 NA intron (NM_001271519, intron 1 of 28) L1MEc|LINE|L1 102686 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 296-3 chr10 56739060 56739295 + 2 NA Intergenic Intergenic -377904 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 256-21 chr3 139287365 139287587 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -53954 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 232 chr1 89152927 89153152 + 2 NA intron (NM_207398, intron 3 of 10) MER95|LTR|ERV1 22964 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 247-2 chr10 43259796 43260037 + 2 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 7149 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 425-14 chr12 44405506 44405860 + 2 NA Intergenic Intergenic 469978 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 569.5-12 chr3 109470500 109470985 + 2 NA intron (NR_109841, intron 3 of 4) THE1B|LTR|ERVL-MaLR 60752 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 331-19 chr15 65048686 65049051 + 2 NA intron (NM_178859, intron 1 of 3) AluSx|SINE|Alu 3481 NM_178859 123264 Hs.27018 NM_178859 ENSG00000186198 SLC51B OSTB|OSTBETA solute carrier family 51 beta subunit protein-coding 432-21 chr5 9842528 9842811 + 2 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 -11708 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 255-17 chr22 25859922 25860141 + 2 NA intron (NM_001318245, intron 21 of 43) L1M4a2|LINE|L1 117843 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 444.5-8 chr20 4441048 4441484 + 2 NA Intergenic AluJo|SINE|Alu -191979 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 206-21 chr6 73828356 73828506 + 2 NA TTS (NM_133493) TTS (NM_133493) 132228 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 174.5-10 chr14 83964862 83964950 + 2 NA Intergenic Intergenic -1307026 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 431-20 chr3 10759887 10760339 + 2 NA non-coding (NR_027102, exon 3 of 3) non-coding (NR_027102, exon 3 of 3) 4096 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 196.5-27 chr5 31942010 31942135 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -5913 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 463-15 chr2 226339731 226340005 + 2 NA Intergenic L1MCa|LINE|L1 197074 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 273.5-23 chr5 76499644 76499923 + 2 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -47626 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 233.5-11 chr15 93018200 93018335 + 2 NA intron (NM_001271, intron 37 of 38) intron (NM_001271, intron 37 of 38) 54889 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 622-13 chr7 4529702 4530119 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -152385 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 209-4 chr10 37903571 37903740 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -45552 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 342-25 chr3 74629373 74629686 + 2 NA Intergenic Intergenic -108389 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 437-9 chr11 69880327 69880855 + 2 NA Intergenic Intergenic -61175 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 391-21 chr5 64125141 64125490 + 2 NA Intergenic MIR|SINE|MIR -40528 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 432-5 chr14 59596239 59596579 + 2 NA 3' UTR (NM_001363702, exon 7 of 7) 3' UTR (NM_001363702, exon 7 of 7) 13730 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 156.5-19 chr3 113649037 113649204 + 2 NA non-coding (NR_111981, exon 7 of 7) non-coding (NR_111981, exon 7 of 7) 47522 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 339-7 chr12 66430667 66430843 + 2 NA intron (NM_001366722, intron 14 of 24) intron (NM_001366722, intron 14 of 24) 128210 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 252.5-18 chr20 31575728 31575993 + 2 NA Intergenic AluSg|SINE|Alu -2597 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 369.5-12 chr2 23063666 23063970 + 2 NA Intergenic Intergenic -321361 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 185.5-18 chr2 115373312 115373431 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 29556 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 288.5-7 chr1 229613357 229613511 + 2 NA intron (NM_001025247, intron 2 of 3) MER2B|DNA|TcMar-Tigger 12613 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 295-26 chr20 19374886 19375062 + 2 NA intron (NM_020689, intron 2 of 16) LTR16C|LTR|ERVL -90378 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 599-4 chr14 75761320 75761737 + 2 NA intron (NM_015072, intron 18 of 31) L1ME2z|LINE|L1 100282 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 511.5-15 chr20 55153939 55154253 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -268947 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 156-14 chr5 11424260 11424396 + 2 NA intron (NM_001288715, intron 2 of 20) L1MD2|LINE|L1 164589 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 463-9 chr14 45199368 45199984 + 2 NA intron (NM_001308133, intron 21 of 21) intron (NM_001308133, intron 21 of 21) 53526 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 333-22 chr3 41105908 41106201 + 2 NA Intergenic L1MDa|LINE|L1 -93451 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 299.5-34 chr9 31144526 31144704 + 2 NA Intergenic Intergenic 236875 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 330.5-34 chr7 84605797 84606136 + 2 NA Intergenic Intergenic 73490 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 506-23 chr6 37215203 37215561 + 2 NA intron (NR_104442, intron 1 of 2) AluSg|SINE|Alu 42217 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 325.5-12 chr16 3770914 3771268 + 2 NA intron (NM_004380, intron 13 of 30) AluSq2|SINE|Alu -53567 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 395-36 chr8 63108330 63108619 + 2 NA Intergenic AluSx1|SINE|Alu -22421 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 202.5-4 chr1 154559854 154560085 + 2 NA Intergenic Intergenic -1307 NM_017582 55585 Hs.607928 NM_017582 ENSG00000160714 UBE2Q1 GTAP|NICE-5|NICE5|PRO3094|UBE2Q ubiquitin conjugating enzyme E2 Q1 protein-coding 199-3 chr11 46390716 46390862 + 2 NA intron (NM_001366692, intron 1 of 1) CpG 825 NM_000741 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 249.5-24 chr5 3919349 3919495 + 2 NA Intergenic L1MA3|LINE|L1 323590 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 374-41 chr8 139089051 139089310 + 2 NA Intergenic L1MA4A|LINE|L1 -175139 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 513.5-9 chr2 108069183 108069497 + 2 NA Intergenic Intergenic -16585 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 332-35 chr5 156945931 156946141 + 2 NA intron (NM_001146726, intron 4 of 7) intron (NM_001146726, intron 4 of 7) 17190 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 259-24 chr6 115457802 115457986 + 2 NA Intergenic Intergenic 185941 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 180.5-5 chr13 91119936 91120045 + 2 NA Intergenic Intergenic -30373 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 376-8 chr15 59960082 59960393 + 2 NA Intergenic L1M4c|LINE|L1 -44074 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 374.5-20 chr4 37291601 37291878 + 2 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 46996 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 371.5-19 chr20 39973645 39973844 + 2 NA Intergenic L1PA8|LINE|L1 -30717 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 210.5-6 chr14 43061684 43061864 + 2 NA Intergenic Intergenic 1445509 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 420.5-8 chr18 68456916 68457277 + 2 NA Intergenic Intergenic 258012 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 237.5-20 chr6 56335540 56335740 + 2 NA intron (NM_001318752, intron 1 of 28) MER89|LTR|ERV1 58488 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 771-7 chr18 6334406 6334897 + 2 NA intron (NM_001365765, intron 1 of 18) Kanga1a|DNA|TcMar-Tc2 24379 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 335-12 chr14 20255147 20255419 + 2 NA Intergenic Intergenic 12491 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 258-26 chr7 80758091 80758282 + 2 NA intron (NM_006379, intron 15 of 17) intron (NM_006379, intron 15 of 17) 111533 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 288-10 chr14 21207765 21207959 + 2 NA promoter-TSS (NR_038971) promoter-TSS (NR_038971) -962 NR_038971 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 352-25 chr22 43867739 43868070 + 2 NA Intergenic Intergenic -5391 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 687-10 chr7 7414481 7414919 + 2 NA intron (NM_001037763, intron 27 of 34) L2a|LINE|L2 121173 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 410-2 chr1 212797671 212797978 + 2 NA intron (NM_001146170, intron 4 of 8) intron (NM_001146170, intron 4 of 8) 5930 NM_001042552 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 267.5-17 chr3 170829541 170829729 + 2 NA Intergenic Intergenic 40560 NR_135259 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 514-18 chr5 23193100 23193545 + 2 NA Intergenic MIRb|SINE|MIR -314287 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 642.5-2 chr10 86290771 86291259 + 2 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) -26227 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 556.5-8 chr2 170641362 170641826 + 2 NA intron (NM_001083615, intron 31 of 33) L1ME4a|LINE|L1 72973 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 411.5-6 chr11 64771257 64771593 + 2 NA intron (NM_001346410, intron 2 of 11) intron (NM_001346410, intron 2 of 11) 6336 NM_001178031 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 216-12 chr2 50289305 50289498 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 58353 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 326-28 chr3 72254527 72254757 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 103385 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 371-7 chr15 87034088 87034320 + 2 NA Intergenic L2a|LINE|L2 -45778 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 425-26 chr19 32018881 32019190 + 2 NA Intergenic Intergenic -6827 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 600-6 chr1 194909555 194910192 + 2 NA Intergenic Intergenic 1178842 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 248.5-33 chrX 14919689 14919825 + 2 NA exon (NM_001177475, exon 14 of 14) exon (NM_001177475, exon 14 of 14) 34466 NM_001177475 158747 Hs.744919 NM_152581 ENSG00000130150 MOSPD2 - motile sperm domain containing 2 protein-coding 417.5-19 chr5 38405192 38405551 + 2 NA intron (NM_182798, intron 1 of 16) L1ME3E|LINE|L1 1830 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 267-22 chr20 12246110 12246278 + 2 NA Intergenic L2a|LINE|L2 328301 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 304.5-39 chr6 121798844 121799080 + 2 NA Intergenic MIRb|SINE|MIR 363316 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 344-27 chr4 76709894 76710184 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 134488 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 791-4 chr5 28289966 28290420 + 2 NA Intergenic Intergenic -2528 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 308-25 chr4 176863872 176864182 + 2 NA Intergenic Intergenic -11675 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 271.5-4 chr1 65737318 65737646 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -55028 NM_001037341 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 319-21 chr2 76489212 76489506 + 2 NA Intergenic L2a|LINE|L2 -496606 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 146.5-13 chr16 73171690 73171791 + 2 NA Intergenic Intergenic -27293 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 817-2 chr8 103275636 103276220 + 2 NA intron (NR_148215, intron 2 of 3) L1MB8|LINE|L1 -22566 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 429.5-9 chr2 4750317 4750656 + 2 NA Intergenic Intergenic -94264 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 191-14 chr8 123932488 123932639 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 80576 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 560-7 chr2 8711356 8711902 + 2 NA Intergenic Intergenic 29573 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 314-28 chr4 59491420 59491725 + 2 NA Intergenic Intergenic 477999 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 380.5-9 chr12 75938288 75938624 + 2 NA Intergenic Intergenic 93320 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 208.5-12 chr2 111651513 111651703 + 2 NA Intergenic L1ME3|LINE|L1 119526 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 370.5-5 chr13 98184047 98184288 + 2 NA intron (NM_005766, intron 1 of 26) AluSq|SINE|Alu -6898 NM_178861 140432 Hs.296045 NM_178861 ENSG00000139797 RNF113B RNF161|ZNF183L1|bA10G5.1 ring finger protein 113B protein-coding 219.5-29 chr3 197304449 197304731 + 2 NA TTS (NR_038289) TTS (NR_038289) -5269 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 333.5-4 chr12 56450316 56450551 + 2 NA 3' UTR (NM_012064, exon 4 of 4) 3' UTR (NM_012064, exon 4 of 4) -1007 NM_001330295 8914 Hs.118631 NM_003920 ENSG00000111602 TIMELESS TIM|TIM1|hTIM timeless circadian regulator protein-coding 174-29 chr7 3769080 3769273 + 2 NA intron (NM_152744, intron 4 of 44) L1MD1|LINE|L1 -360509 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 232-2 chr1 191557838 191558073 + 2 NA Intergenic Intergenic -329457 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 374.5-2 chr10 62198632 62199066 + 2 NA intron (NM_145307, intron 11 of 11) intron (NM_145307, intron 11 of 11) 69995 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 284.5-29 chr4 63983180 63983485 + 2 NA Intergenic L1M1|LINE|L1 426118 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 310.5-37 chr5 153496233 153496529 + 2 NA intron (NM_001258019, intron 2 of 14) intron (NM_001258019, intron 2 of 14) 4209 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 236-6 chr11 112614122 112614307 + 2 NA Intergenic AluJr|SINE|Alu -58412 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 306 chr1 154631586 154631751 + 2 NA Intergenic L1ME3F|LINE|L1 -3671 NM_001365045 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 482-21 chr9 33278838 33279339 + 2 NA intron (NM_016410, intron 7 of 7) AluSz6|SINE|Alu -11428 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 403-15 chr15 64677877 64678117 + 2 NA intron (NM_015042, intron 4 of 8) intron (NM_015042, intron 4 of 8) 25284 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 430-34 chr7 32666756 32667018 + 2 NA intron (NR_036680, intron 5 of 16) MIR|SINE|MIR 52281 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 416.5-17 chr5 4552704 4552933 + 2 NA Intergenic Intergenic -220663 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 257.5-35 chr5 133204087 133204305 + 2 NA intron (NM_015082, intron 14 of 15) intron (NM_015082, intron 14 of 15) 152183 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 421-9 chr12 55938253 55938712 + 2 NA intron (NR_147027, intron 6 of 25) intron (NR_147027, intron 6 of 25) 2474 NM_001351037 1606 Hs.524488 NM_001345 ENSG00000065357 DGKA DAGK|DAGK1|DGK-alpha diacylglycerol kinase alpha protein-coding 228.5-31 chr7 7859305 7859443 + 2 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 109378 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 220-7 chr13 80803643 80803819 + 2 NA Intergenic L1MA8|LINE|L1 -214660 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 355-9 chr15 95626517 95626795 + 2 NA Intergenic Intergenic 193563 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 248.5-19 chr3 28096593 28096851 + 2 NA Intergenic L1M4b|LINE|L1 -144897 NM_182523 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 821-3 chr4 39852627 39853272 + 2 NA intron (NM_001100399, intron 26 of 32) L2c|LINE|L2 124962 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 334.5-23 chr4 61225307 61225754 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 23358 NM_001371342 310.5-6 chr10 65404980 65405249 + 2 NA Intergenic Intergenic -166311 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 276-31 chr3 42904371 42904628 + 2 NA Intergenic AluJb|SINE|Alu -1643 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 339.5-10 chr14 71027882 71028191 + 2 NA intron (NM_014982, intron 15 of 35) intron (NM_014982, intron 15 of 35) 120577 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 533-3 chr10 31591349 31591818 + 2 NA Intergenic L1MB3|LINE|L1 -191828 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 254.5-10 chr12 65273024 65273349 + 2 NA Intergenic L2a|LINE|L2 -5497 NM_001193460 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 295-44 chr8 125045602 125045932 + 2 NA intron (NM_014846, intron 20 of 28) intron (NM_014846, intron 20 of 28) 46025 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 291-7 chr14 45466087 45466300 + 2 NA Intergenic Intergenic -212991 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 174.5-30 chr5 105370214 105370319 + 2 NA Intergenic L1MD|LINE|L1 270792 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 345-34 chr6 41895560 41895964 + 2 NA promoter-TSS (NM_018561) promoter-TSS (NM_018561) -387 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 292.5 chr1 46079323 46079610 + 2 NA intron (NM_001328653, intron 1 of 8) MER5A|DNA|hAT-Charlie 51207 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 437-14 chr14 69263421 69264013 + 2 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 3559 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 222.5-12 chr2 83393472 83393631 + 2 NA Intergenic MER110-int|LTR|ERV1 -129263 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 380.5-19 chr22 36289519 36289810 + 2 NA intron (NM_002473, intron 31 of 40) intron (NM_002473, intron 31 of 40) -2757 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 227-15 chr15 24295350 24295471 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125462 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 348-22 chr3 60234378 60234614 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -153587 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 484-21 chr2 72317072 72317367 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -169357 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 285-21 chr4 148760264 148760534 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 181979 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 537-19 chr6 65678423 65678738 + 2 NA intron (NM_001292009, intron 1 of 43) L1MB1|LINE|L1 28645 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 327-38 chr5 137630059 137630382 + 2 NA intron (NM_017415, intron 12 of 14) intron (NM_017415, intron 12 of 14) 17429 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 373-20 chr17 79852765 79853018 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -13451 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 401.5-27 chr5 154167402 154167901 + 2 NA Intergenic MIRb|SINE|MIR -23082 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 275-33 chr7 9152695 9152898 + 2 NA Intergenic Intergenic -481474 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 244-28 chr8 126697277 126697434 + 2 NA Intergenic Intergenic -138877 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 225-29 chr6 43366346 43366564 + 2 NA intron (NM_014345, intron 1 of 9) L2a|LINE|L2 3192 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 403-23 chr2 58950273 58950784 + 2 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -267180 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 339 chr10 22184335 22184554 + 2 NA Intergenic Intergenic 25539 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 202.5-20 chr4 68181664 68181886 + 2 NA promoter-TSS (NR_015446) promoter-TSS (NR_015446) -517 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 275.5-20 chr2 227961068 227961358 + 2 NA Intergenic Intergenic 89582 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 177-16 chr5 148394123 148394245 + 2 NA intron (NM_001271723, intron 1 of 20) MIR3|SINE|MIR 10226 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 544-19 chr8 125647980 125648411 + 2 NA Intergenic LTR33A_|LTR|ERVL 215986 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 325-28 chr6 152092175 152092425 + 2 NA intron (NM_001328100, intron 6 of 6) intron (NM_001328100, intron 6 of 6) 75987 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 285.5-12 chr21 30122793 30123018 + 2 NA Intergenic Intergenic 43900 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 289-30 chr3 173343170 173343441 + 2 NA Intergenic Intergenic -52647 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 264.5 chr1 79654433 79654590 + 2 NA Intergenic Intergenic -647781 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 547-8 chr2 10046301 10046728 + 2 NA intron (NM_001177716, intron 2 of 3) intron (NM_001177716, intron 2 of 3) 2269 NM_001177718 8462 Hs.12229 NM_003597 ENSG00000172059 KLF11 FKLF|FKLF1|MODY7|TIEG2|Tieg3 Kruppel like factor 11 protein-coding 229.5-20 chr20 57043303 57043455 + 2 NA Intergenic Intergenic -170317 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 436-11 chr15 88311720 88312097 + 2 NA Intergenic Intergenic -55169 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 299-10 chr12 12794005 12794202 + 2 NA Intergenic Intergenic 8444 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 345-39 chr7 67584235 67584492 + 2 NA Intergenic L2b|LINE|L2 248387 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 480-19 chr2 210084977 210085387 + 2 NA intron (NM_001307976, intron 5 of 13) L1MC5a|LINE|L1 55260 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 280-12 chr12 117842153 117842507 + 2 NA intron (NM_173598, intron 3 of 19) L2c|LINE|L2 126660 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 413-21 chr2 221580235 221580637 + 2 NA Intergenic Intergenic -6234 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 643-15 chr8 22529377 22529852 + 2 NA intron (NM_005605, intron 10 of 13) AluSz|SINE|Alu -22313 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 210-14 chr2 62700983 62701170 + 2 NA intron (NM_001142615, intron 1 of 22) intron (NM_001142615, intron 1 of 22) -4548 NM_001354212 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 327-5 chr10 74212277 74212651 + 2 NA intron (NM_001202449, intron 2 of 9) L2c|LINE|L2 35701 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 556.5-12 chr4 55364850 55365503 + 2 NA intron (NM_024592, intron 3 of 4) intron (NM_024592, intron 3 of 4) 18934 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 402-22 chr2 201658434 201658712 + 2 NA intron (NM_033066, intron 15 of 21) intron (NM_033066, intron 15 of 21) -15070 NM_001044385 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 393-2 chr10 99195005 99195287 + 2 NA intron (NM_021828, intron 2 of 11) L1MA1|LINE|L1 40729 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 385-18 chr2 70411879 70412139 + 2 NA Intergenic Intergenic 69631 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 241-18 chr5 157449992 157450228 + 2 NA intron (NR_136204, intron 1 of 3) MIRc|SINE|MIR -9909 NM_001172292 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 390-10 chr18 2457410 2457736 + 2 NA Intergenic L1MA3|LINE|L1 113932 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 236-5 chr11 93696536 93696735 + 2 NA intron (NM_033395, intron 14 of 29) intron (NM_033395, intron 14 of 29) -24879 NR_002569 619383 Hs.660668 NR_002569 ENSG00000254911 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 275.5 chr1 16403370 16403554 + 2 NA intron (NM_198546, intron 10 of 12) MLT1K|LTR|ERVL-MaLR 33962 NM_198546 374955 Hs.705501 NM_198546 ENSG00000187144 SPATA21 spergen-2|spergen2 spermatogenesis associated 21 protein-coding 301-6 chr10 68993683 68993916 + 2 NA intron (NM_015634, intron 1 of 6) Charlie19a|DNA|hAT-Charlie 4996 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 525-13 chr2 223820534 223820821 + 2 NA intron (NR_110905, intron 1 of 5) (A)n|Simple_repeat|Simple_repeat 16905 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 481.5-2 chr1 114567169 114567474 + 2 NA TTS (NM_005872) TTS (NM_005872) 14294 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 442-16 chr4 172096716 172097042 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -283272 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 380.5-29 chr9 124762917 124763356 + 2 NA intron (NM_001278546, intron 1 of 9) Charlie1a|DNA|hAT-Charlie 8175 NM_001489 2649 Hs.20131 NM_001489 ENSG00000148200 NR6A1 CT150|GCNF|GCNF1|NR61|RTR|hGCNF|hRTR nuclear receptor subfamily 6 group A member 1 protein-coding 264.5-23 chr20 41951851 41952127 + 2 NA Intergenic MIR|SINE|MIR -333612 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 461-9 chr19 36975887 36976219 + 2 NA intron (NM_001204839, intron 6 of 8) intron (NM_001204839, intron 6 of 8) 59721 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 290-15 chr2 60716089 60716302 + 2 NA Intergenic Intergenic -40073 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 306.5-35 chr6 163293937 163294171 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 30419 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 174.5-34 chr8 117888029 117888116 + 2 NA intron (NM_000127, intron 1 of 10) AluSp|SINE|Alu 32841 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 290-33 chr8 46221051 46221357 + 2 NA Intergenic GSAT|Satellite|centr 396439 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 311.5-43 chr8 129772951 129773113 + 2 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 13592 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 216.5-34 chr7 6032694 6032842 + 2 NA intron (NM_001271700, intron 1 of 2) intron (NM_001271700, intron 1 of 2) 1392 NM_001271700 100310846 Hs.744468 NM_001271700 ENSG00000157999 ANKRD61 - ankyrin repeat domain 61 protein-coding 281.5-12 chr17 21858014 21858276 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 165622 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 447-33 chr9 122930339 122930634 + 2 NA intron (NM_001304363, intron 1 of 1) intron (NM_001304363, intron 1 of 1) 779 NM_001304364 57684 Hs.5638 NM_020924 ENSG00000171448 ZBTB26 ZNF481|bioref zinc finger and BTB domain containing 26 protein-coding 595-9 chr2 119561131 119561428 + 2 NA intron (NR_073132, intron 5 of 24) AluSx3|SINE|Alu 16830 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 304-11 chr15 72866416 72866709 + 2 NA Intergenic Intergenic -82804 NM_031284 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 409-9 chr14 72685822 72686188 + 2 NA intron (NM_001280544, intron 7 of 9) L2b|LINE|L2 169185 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 439-9 chr22 37889393 37889736 + 2 NA TTS (NM_016091) TTS (NM_016091) -16733 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 822-5 chr5 54243676 54244316 + 2 NA intron (NM_019087, intron 1 of 4) MIR3|SINE|MIR 66577 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 498-10 chr15 59159016 59159575 + 2 NA intron (NM_004998, intron 24 of 27) intron (NM_004998, intron 24 of 27) 11967 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 353-20 chr2 18369050 18369299 + 2 NA Intergenic Intergenic 191479 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 342.5-6 chr11 28948918 28949115 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -471468 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 327.5-11 chr17 81962994 81963285 + 2 NA Intergenic Intergenic -1952 NM_178493 147111 Hs.106137 NM_178493 ENSG00000185269 NOTUM hNOTUM notum, palmitoleoyl-protein carboxylesterase protein-coding 308.5-24 chr4 124210179 124210500 + 2 NA Intergenic Intergenic 348095 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 257-33 chr4 35735764 35735947 + 2 NA Intergenic LTR33|LTR|ERVL 508084 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 218-25 chr5 85476486 85476660 + 2 NA Intergenic MLT2B1|LTR|ERVL -805871 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 381.5-5 chr14 57734114 57734304 + 2 NA intron (NR_159373, intron 1 of 10) MIRb|SINE|MIR 130790 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 435.5-10 chr22 44628370 44628701 + 2 NA Intergenic Intergenic -3116 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 511.5-12 chr2 193816772 193817282 + 2 NA Intergenic Intergenic -527242 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 407-18 chr2 74294263 74294530 + 2 NA intron (NM_133478, intron 7 of 30) Tigger20a|DNA|TcMar-Tigger 20629 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 225.5-39 chrX 67508524 67508761 + 2 NA Intergenic L1MD2|LINE|L1 -35379 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 553-5 chr2 49537197 49537629 + 2 NA Intergenic L1MA3|LINE|L1 -382886 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 579-14 chr21 19089831 19090183 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -330195 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 171.5-18 chr3 131654862 131655069 + 2 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -151994 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 438-25 chr3 191657006 191657326 + 2 NA Intergenic Intergenic 196003 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 279-16 chr2 46562646 46562903 + 2 NA intron (NM_012249, intron 2 of 4) intron (NM_012249, intron 2 of 4) 17464 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 400-11 chr16 52254142 52254512 + 2 NA Intergenic Intergenic -4237 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 418-8 chr12 19420720 19421035 + 2 NA Intergenic Intergenic -18615 NM_153207 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 140-10 chr7 28752760 28752888 + 2 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 66691 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 517.5-7 chr16 29927207 29927611 + 2 NA Intergenic Intergenic -1183 NM_178863 253980 Hs.534590 NM_178863 ENSG00000174943 KCTD13 BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1 potassium channel tetramerization domain containing 13 protein-coding 494-15 chr22 34704332 34704617 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 293442 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 406-20 chr6 86993693 86993930 + 2 NA intron (NM_000865, intron 1 of 1) L1MDa|LINE|L1 56283 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 400-4 chr1 222755005 222755460 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 15548 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 284.5-9 chr10 110370366 110370654 + 2 NA Intergenic AluSc5|SINE|Alu -65590 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 463.5-25 chr8 51373917 51374431 + 2 NA intron (NM_144651, intron 18 of 22) intron (NM_144651, intron 18 of 22) 435271 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 981-3 chr9 97694998 97695741 + 2 NA intron (NM_000380, intron 1 of 5) intron (NM_000380, intron 1 of 5) 2040 NM_000380 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 309 chr1 48158054 48158317 + 2 NA intron (NR_026749, intron 7 of 9) L1MB3|LINE|L1 24243 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 576-8 chr2 75074089 75074484 + 2 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -16526 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 439.5-15 chr2 49069340 49069633 + 2 NA intron (NM_000145, intron 1 of 9) L2a|LINE|L2 9883 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 414-30 chr5 11523769 11524022 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 65022 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 224-5 chr12 2875472 2875610 + 2 NA promoter-TSS (NR_046433) promoter-TSS (NR_046433) -724 NR_046433 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 321.5-2 chr1 112989028 112989222 + 2 NA Intergenic Intergenic 32710 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 437-42 chr9 79533078 79533404 + 2 NA Intergenic MIR|SINE|MIR -38532 NM_001351541 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 396-7 chr13 73104045 73104306 + 2 NA Intergenic AluSx|SINE|Alu 45170 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 329-21 chr3 113873909 113874155 + 2 NA intron (NM_017577, intron 3 of 17) intron (NM_017577, intron 3 of 17) -23468 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 344.5-16 chr2 229618746 229619003 + 2 NA intron (NM_139072, intron 1 of 12) AluJr4|SINE|Alu 95681 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 478-4 chr11 9186521 9186801 + 2 NA intron (NR_145966, intron 5 of 21) intron (NR_145966, intron 5 of 21) 78665 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 353.5-24 chr8 122311195 122311498 + 2 NA Intergenic Intergenic 257298 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 305-38 chr4 59387032 59387410 + 2 NA Intergenic MIR|SINE|MIR 373648 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 253-22 chr3 121705336 121705475 + 2 NA intron (NM_001256486, intron 10 of 21) L1ME2z|LINE|L1 44336 NM_004487 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 364 chr1 44763103 44763432 + 2 NA intron (NM_006845, intron 19 of 20) intron (NM_006845, intron 19 of 20) 1232 NR_145793 109623476 NR_145793 SNORD160 - small nucleolar RNA, C/D box 160 snoRNA 346-23 chr20 38675054 38675276 + 2 NA Intergenic Intergenic -49321 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 351.5-15 chr21 29547376 29547800 + 2 NA intron (NM_001330993, intron 15 of 16) MIR3|SINE|MIR -48452 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 314-37 chr7 23005059 23005467 + 2 NA intron (NM_032581, intron 1 of 10) MIR|SINE|MIR 8867 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 328-3 chr1 215233068 215233302 + 2 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 150448 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 203.5-23 chr5 24270665 24270766 + 2 NA Intergenic L1MC5|LINE|L1 319367 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 244-13 chr17 61635391 61635557 + 2 NA Intergenic L1MA4|LINE|L1 -44255 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 341-31 chr6 56461203 56461563 + 2 NA intron (NM_001144770, intron 93 of 94) intron (NM_001144770, intron 93 of 94) -67255 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 369-6 chr10 49363299 49363583 + 2 NA TTS (NM_001276451) TTS (NM_001276451) 32648 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 526-7 chr20 40383748 40384263 + 2 NA Intergenic L2a|LINE|L2 305231 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 119.5-8 chr2 233707615 233707724 + 2 NA intron (NM_205862, intron 2 of 5) L1ME3B|LINE|L1 -5323 NM_019078 54579 Hs.554822 NM_019078 ENSG00000240224 UGT1A5 UDPGT|UDPGT 1-5|UGT1E UDP glucuronosyltransferase family 1 member A5 protein-coding 353-38 chr8 108747046 108747235 + 2 NA intron (NR_136411, intron 1 of 3) MER21C|LTR|ERVL 40454 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 160-14 chr6 45619020 45619148 + 2 NA Intergenic MIRb|SINE|MIR 196809 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 275-43 chr9 103427185 103427376 + 2 NA Intergenic L1ME4a|LINE|L1 -102247 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 356-41 chr9 121763021 121763209 + 2 NA intron (NM_032552, intron 6 of 16) intron (NM_032552, intron 6 of 16) 20330 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 378.5-30 chr7 54761386 54761614 + 2 NA intron (NR_110040, intron 1 of 2) L1ME2z|LINE|L1 2187 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 276-22 chr18 76941331 76941487 + 2 NA intron (NM_001306089, intron 26 of 30) intron (NM_001306089, intron 26 of 30) 75646 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 277.5-23 chr3 49031481 49031619 + 2 NA intron (NM_017730, intron 10 of 10) L2a|LINE|L2 -2152 NM_000884 3615 Hs.654400 NM_000884 ENSG00000178035 IMPDH2 IMPD2|IMPDH-II inosine monophosphate dehydrogenase 2 protein-coding 233.5-18 chr22 32225504 32225708 + 2 NA intron (NM_014227, intron 12 of 14) intron (NM_014227, intron 12 of 14) 20491 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 313-5 chr11 24779977 24780338 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 283104 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 359.5-6 chr11 86640127 86640489 + 2 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 31890 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 528-17 chr2 166649364 166649757 + 2 NA Intergenic Intergenic -162589 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 301.5-5 chr18 5065512 5065826 + 2 NA Intergenic Intergenic -15513 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 248.5-2 chr1 109725470 109725779 + 2 NA Intergenic LTR3|LTR|ERVK 13373 NM_000851 2949 Hs.75652 NM_000851 ENSG00000134201 GSTM5 GSTM5-5|GTM5 glutathione S-transferase mu 5 protein-coding 323-21 chr20 37954943 37955232 + 2 NA Intergenic L1ME3B|LINE|L1 51960 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 382-37 chr5 92511933 92512212 + 2 NA Intergenic L1MB8|LINE|L1 1059271 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 517-9 chr2 42341077 42341465 + 2 NA intron (NM_001319038, intron 2 of 2) intron (NM_001319038, intron 2 of 2) 18767 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 317.5-39 chr8 129277671 129277947 + 2 NA Intergenic Intergenic -36569 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 1062-2 chr20 31060383 31061533 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -196706 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 240-33 chr4 72749215 72749401 + 2 NA Intergenic LTR1D1|LTR|ERV1 -180087 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 280.5-11 chr18 64611264 64611499 + 2 NA Intergenic L2|LINE|L2 -351326 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 218-5 chr10 20018869 20019035 + 2 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 202520 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 430-9 chr12 40922804 40923177 + 2 NA intron (NM_001256064, intron 5 of 15) intron (NM_001256064, intron 5 of 15) 14633 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 548-9 chr2 39327251 39327575 + 2 NA intron (NM_003618, intron 8 of 33) intron (NM_003618, intron 8 of 33) -83430 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 240-30 chr3 82744312 82744462 + 2 NA Intergenic L1PA15|LINE|L1 758245 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 333-14 chr2 53540711 53540997 + 2 NA Intergenic LTR16A|LTR|ERVL -226929 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 285-2 chr1 54601041 54601225 + 2 NA intron (NM_015547, intron 8 of 16) (GT)n|Simple_repeat|Simple_repeat 22392 NM_176782 338094 Hs.234786 NM_176782 ENSG00000162391 FAM151A C1orf179 family with sequence similarity 151 member A protein-coding 207-18 chr3 48096651 48096776 + 2 NA Intergenic Intergenic -7865 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 358-32 chr3 114133730 114133939 + 2 NA intron (NM_000796, intron 5 of 6) MLT1N2|LTR|ERVL-MaLR 44942 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 619-2 chr1 85610280 85610693 + 2 NA Intergenic L1ME4b|LINE|L1 29725 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 294-29 chr4 71916868 71917033 + 2 NA Intergenic L1M4c|LINE|L1 -111430 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 224-2 chr1 64372028 64372198 + 2 NA Intergenic MIR|SINE|MIR -98016 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 370-3 chr1 111972890 111973122 + 2 NA intron (NM_172198, intron 2 of 6) Tigger19a|DNA|TcMar-Tigger 16149 NM_172198 3752 Hs.666367 NM_004980 ENSG00000171385 KCND3 BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22 potassium voltage-gated channel subfamily D member 3 protein-coding 180.5-11 chr22 26335073 26335269 + 2 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -94089 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 284.5-15 chr14 46650121 46650269 + 2 NA TTS (NM_080746) TTS (NM_080746) 1586 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 367-30 chr6 42575298 42575579 + 2 NA intron (NM_015255, intron 2 of 46) intron (NM_015255, intron 2 of 46) 11409 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 324-45 chr9 128747275 128747550 + 2 NA intron (NM_006336, intron 8 of 15) intron (NM_006336, intron 8 of 15) 22950 NR_046240 100506100 Hs.62946 NR_046240 ENSG00000223478 LOC100506100 - uncharacterized LOC100506100 ncRNA 345.5-15 chr18 66752518 66752720 + 2 NA Intergenic L1M4a2|LINE|L1 -148529 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 189.5-15 chr20 17241109 17241276 + 2 NA intron (NM_001201529, intron 1 of 10) intron (NM_001201529, intron 1 of 10) 14152 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 224.5-19 chr2 144450299 144450453 + 2 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -69238 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 231.5-34 chr7 156554553 156554668 + 2 NA intron (NR_026865, intron 2 of 3) L1ME1|LINE|L1 14119 NR_024119 64433 Hs.404170 NR_024119 ENSG00000279418 LINC00244 C7orf4|NCRNA00244 long intergenic non-protein coding RNA 244 ncRNA 299-6 chr10 34051725 34052022 + 2 NA Intergenic Intergenic -279193 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 283-2 chr1 79096826 79097092 + 2 NA Intergenic AluJr|SINE|Alu -90229 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 552-20 chr5 152602332 152602781 + 2 NA Intergenic Intergenic -197277 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 595.5-8 chr4 125251280 125251630 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -64957 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 534-16 chr2 178866039 178866477 + 2 NA intron (NM_173648, intron 16 of 23) intron (NM_173648, intron 16 of 23) -58835 NM_133378 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 354.5-29 chr5 35334885 35335158 + 2 NA Intergenic Intergenic -104534 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 316-47 chrX 94694111 94694397 + 2 NA Intergenic L1P4a|LINE|L1 368972 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 397-10 chr14 67333356 67333634 + 2 NA 3' UTR (NM_022474, exon 15 of 15) 3' UTR (NM_022474, exon 15 of 15) 26309 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 351.5-14 chr21 14959341 14959733 + 2 NA Intergenic Intergenic -40869 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 186 chr1 74499705 74499880 + 2 NA intron (NM_015978, intron 23 of 24) L1M5|LINE|L1 12822 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 540.5-5 chr4 37808935 37809277 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -17580 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 181-4 chr11 68513037 68513192 + 2 NA intron (NR_147971, intron 2 of 24) Ricksha_c|DNA|MULE-MuDR 52362 NM_001164161 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 261.5-9 chr12 126775003 126775342 + 2 NA Intergenic AluSx3|SINE|Alu -2910 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 519-16 chr7 27401801 27402204 + 2 NA Intergenic L2a|LINE|L2 -154773 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 155-9 chr5 73437976 73438123 + 2 NA Intergenic Intergenic 10728 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 227-35 chr8 80262617 80262866 + 2 NA Intergenic MIRb|SINE|MIR 21352 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 363-10 chr12 23759689 23759906 + 2 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) -175211 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 378.5-27 chr6 46156611 46156841 + 2 NA Intergenic L1MD1|LINE|L1 14254 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 347-27 chr8 118425664 118425892 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -195223 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 561-14 chr22 26340826 26341341 + 2 NA intron (NM_001184776, intron 10 of 14) L2|LINE|L2 -88177 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 194-13 chr2 203506784 203506907 + 2 NA intron (NM_001329728, intron 1 of 15) (TATATA)n|Simple_repeat|Simple_repeat 28456 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 350-37 chr7 51216943 51217239 + 2 NA intron (NM_015198, intron 2 of 12) intron (NM_015198, intron 2 of 12) 99718 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 545-11 chr15 61972140 61972625 + 2 NA intron (NM_001018088, intron 27 of 81) intron (NM_001018088, intron 27 of 81) 88065 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 332-37 chr6 166559425 166559820 + 2 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -14932 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 331-34 chr5 101543315 101543681 + 2 NA Intergenic L2|LINE|L2 -640216 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 244-25 chr5 8114292 8114493 + 2 NA Intergenic Intergenic 245244 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 277-37 chr5 17705960 17706163 + 2 NA Intergenic MIRb|SINE|MIR -50423 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 395-9 chr15 94215038 94215351 + 2 NA Intergenic L1MA3|LINE|L1 -83007 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 373-31 chr3 131729623 131729993 + 2 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) -226837 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 548-4 chr11 98994913 98995335 + 2 NA Intergenic MLT2B1|LTR|ERVL -25825 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 265-12 chr16 9263554 9263785 + 2 NA Intergenic Intergenic -91919 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 238-32 chr6 137496020 137496226 + 2 NA Intergenic Intergenic -1729 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 276.5-22 chr2 119576674 119576914 + 2 NA intron (NR_073132, intron 6 of 24) intron (NR_073132, intron 6 of 24) 32345 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 447-27 chr8 99779808 99780136 + 2 NA intron (NM_017890, intron 42 of 61) intron (NM_017890, intron 42 of 61) 113735 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 294.5-27 chr4 140137734 140137946 + 2 NA non-coding (NR_147610, exon 5 of 5) non-coding (NR_147610, exon 5 of 5) 9825 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 430.5-24 chr8 80163030 80163357 + 2 NA intron (NR_105035, intron 1 of 6) L1MB2|LINE|L1 7928 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 240-22 chr2 25355213 25355440 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -12736 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 353-32 chr5 27963534 27963818 + 2 NA Intergenic L1PREC2|LINE|L1 323989 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 325-35 chr8 131705530 131705845 + 2 NA Intergenic MIR|SINE|MIR -198406 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 580-9 chr2 3600348 3600886 + 2 NA intron (NR_045659, intron 1 of 7) intron (NR_045659, intron 1 of 7) -1289 NM_001255985 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 370-14 chr18 68432814 68433166 + 2 NA Intergenic Intergenic 282118 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 703-2 chr5 145389071 145389535 + 2 NA Intergenic Intergenic 446039 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 387-3 chr1 86667713 86668033 + 2 NA intron (NR_135837, intron 4 of 4) L1MA3|LINE|L1 33597 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 583-20 chr9 84299004 84299347 + 2 NA intron (NM_022127, intron 7 of 18) intron (NM_022127, intron 7 of 18) 41583 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 693-8 chr3 104615418 104615852 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -751078 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 574-17 chr6 15851803 15852342 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -189014 NM_001271669 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 335-56 chr9 69327935 69328191 + 2 NA intron (NM_001347995, intron 1 of 10) L1MC5|LINE|L1 -1262 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 415.5-17 chr7 24772035 24772268 + 2 NA Intergenic Intergenic -14212 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 495.5-16 chrX 91046759 91047266 + 2 NA Intergenic Intergenic -387827 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 343-9 chr12 62400152 62400409 + 2 NA intron (NR_147080, intron 18 of 19) intron (NR_147080, intron 18 of 19) -66546 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 324.5-6 chr1 218214470 218214782 + 2 NA Intergenic LTR1A2|LTR|ERV1 -70667 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 225-34 chr8 101644305 101644548 + 2 NA intron (NM_024915, intron 13 of 15) intron (NM_024915, intron 13 of 15) 146543 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 129-5 chr2 225742291 225742389 + 2 NA Intergenic Intergenic 341454 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 242-4 chr11 120407375 120407563 + 2 NA intron (NM_015313, intron 2 of 40) intron (NM_015313, intron 2 of 40) 22142 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 171.5-23 chr5 84047716 84047801 + 2 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -326903 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 767.5 chr12 50056588 50057201 + 2 NA promoter-TSS (NR_046389) promoter-TSS (NR_046389) -702 NR_046389 41 Hs.274361 NM_001095 ENSG00000110881 ASIC1 ACCN2|ASIC|BNaC2 acid sensing ion channel subunit 1 protein-coding 347.5-13 chr18 6068648 6068875 + 2 NA intron (NM_173464, intron 16 of 19) L1PB2|LINE|L1 -172807 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 333.5-23 chr8 138769384 138769603 + 2 NA intron (NM_152888, intron 16 of 64) intron (NM_152888, intron 16 of 64) 144548 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 412-13 chr17 55945758 55946012 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 194780 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 523-13 chr17 66017808 66018250 + 2 NA intron (NM_001353129, intron 16 of 26) intron (NM_001353129, intron 16 of 26) 173863 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 515.5-3 chr12 4858134 4858485 + 2 NA Intergenic Intergenic 49133 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 618.5-2 chr10 90553364 90553757 + 2 NA Intergenic Intergenic -12755 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 301-8 chr10 81124416 81124661 + 2 NA Intergenic Intergenic 474741 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 408-26 chr22 46284374 46284681 + 2 NA intron (NM_017931, intron 8 of 13) intron (NM_017931, intron 8 of 13) 12133 NR_024009 150384 Hs.348663 NR_024009 ENSG00000277232 GTSE1-DT CN5H6.4|GTSE1-AS1|LL22NC03-5H6.6 GTSE1 divergent transcript ncRNA 333.5-17 chr3 42319012 42319420 + 2 NA Intergenic MER65-int|LTR|ERV1 -53031 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 460.5-28 chr6 295077 295454 + 2 NA intron (NR_104475, intron 1 of 3) intron (NR_104475, intron 1 of 3) 3208 NR_104473 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 541 chr1 63398982 63399319 + 2 NA intron (NM_013339, intron 3 of 14) MLT1F2|LTR|ERVL-MaLR 31523 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 330-13 chr14 74322045 74322349 + 2 NA Intergenic AluJb|SINE|Alu -19263 NR_148467 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 280-34 chr8 37391874 37392097 + 2 NA Intergenic Intergenic 101928 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 205-21 chr3 165754935 165755108 + 2 NA Intergenic L2b|LINE|L2 82402 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 307-15 chr2 49937402 49937659 + 2 NA intron (NM_001330097, intron 5 of 5) intron (NM_001330097, intron 5 of 5) 36673 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 198-16 chr4 31757671 31757815 + 2 NA Intergenic L2a|LINE|L2 -239636 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 240-23 chr2 43010660 43010828 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 28799 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 241-22 chr7 80525067 80525244 + 2 NA Intergenic Intergenic -13091 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 323.5-28 chr7 159160359 159160629 + 2 NA Intergenic MER34B-int|LTR|ERV1 -15537 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 287-13 chr17 7499653 7499890 + 2 NA intron (NM_000937, intron 10 of 29) intron (NM_000937, intron 10 of 29) 15405 NM_000937 5430 Hs.270017 NM_000937 POLR2A POLR2|POLRA|RPB1|RPBh1|RPO2|RPOL2|RpIILS|hRPB220|hsRPB1 RNA polymerase II subunit A protein-coding 411-34 chr6 111618973 111619269 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -12847 NM_001164281 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 320.5-5 chr12 4911659 4912040 + 2 NA exon (NM_000217, exon 2 of 2) exon (NM_000217, exon 2 of 2) 1944 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 356.5-38 chr8 20943789 20944130 + 2 NA Intergenic Intergenic -9674 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 235-27 chr4 56272399 56272541 + 2 NA 5' UTR (NM_020722, exon 3 of 11) 5' UTR (NM_020722, exon 3 of 11) 102275 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 332-30 chr4 53062984 53063250 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 200800 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 245.5-29 chr5 156264500 156264635 + 2 NA Intergenic MIRb|SINE|MIR -62190 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 448-31 chr8 76830985 76831529 + 2 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) 135593 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 386-4 chr10 59548659 59548852 + 2 NA Intergenic L1MC4a|LINE|L1 161136 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 217-5 chr12 72526480 72526636 + 2 NA intron (NM_013381, intron 6 of 18) intron (NM_013381, intron 6 of 18) -253049 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 459.5-8 chr16 35404817 35405220 + 2 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat 41487 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 299.5-3 chr1 215718743 215719084 + 2 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 151609 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 716-4 chr4 109737723 109738388 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -7985 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 470-4 chr11 38560540 38560931 + 2 NA Intergenic L1MB5|LINE|L1 85621 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 361-3 chr1 109771980 109772323 + 2 NA Intergenic Intergenic -8228 NM_024526 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 379-36 chr5 179421820 179422029 + 2 NA Intergenic Intergenic -76463 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 316-40 chr7 3180606 3180879 + 2 NA Intergenic L2a|LINE|L2 -22169 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 225-11 chr14 61338102 61338342 + 2 NA intron (NM_006255, intron 1 of 13) L2b|LINE|L2 16779 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 423-31 chr5 74225040 74225399 + 2 NA Intergenic Intergenic 83106 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 280-18 chr18 5595696 5595869 + 2 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) 33209 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 482-15 chr3 167605991 167606254 + 2 NA intron (NM_001366158, intron 2 of 15) MER5A1|DNA|hAT-Charlie 47820 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 176.5-24 chr5 38945739 38945901 + 2 NA intron (NM_001285439, intron 34 of 38) intron (NM_001285439, intron 34 of 38) 99808 NM_001323506 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 408-15 chr14 64551328 64551696 + 2 NA intron (NM_172365, intron 2 of 11) intron (NM_172365, intron 2 of 11) 1551 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 196.5 chr1 186369548 186369736 + 2 NA intron (NM_003292, intron 3 of 50) L1M3|LINE|L1 5611 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 585 chr1 67183089 67183439 + 2 NA intron (NM_144701, intron 4 of 10) AluSx1|SINE|Alu 16810 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 559-12 chr2 119499424 119500011 + 2 NA intron (NM_002980, intron 1 of 12) L1MDa|LINE|L1 23263 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 264-15 chr2 58582783 58582983 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 62130 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 316.5-6 chr1 233039629 233039814 + 2 NA intron (NM_014801, intron 25 of 33) intron (NM_014801, intron 25 of 33) 88879 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 437-23 chr2 26646272 26646565 + 2 NA Intergenic L1MB7|LINE|L1 -5052 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 211-22 chr5 54621712 54621879 + 2 NA Intergenic Intergenic 81529 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 406.5-5 chr12 19075326 19075567 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -54287 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 318-28 chr3 178868048 178868280 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -7759 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 314-45 chrX 119968606 119968897 + 2 NA Intergenic Intergenic -25000 NM_024528 79576 Hs.522771 NM_024528 ENSG00000101882 NKAP - NFKB activating protein protein-coding 222-16 chr2 175870689 175870825 + 2 NA Intergenic MIRc|SINE|MIR 131510 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 638-4 chr15 80960410 80960828 + 2 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 29200 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 559-17 chr5 164546099 164546561 + 2 NA Intergenic L1PA12|LINE|L1 76051 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 464.5-7 chr11 4024268 4024546 + 2 NA intron (NM_001277962, intron 3 of 12) intron (NM_001277962, intron 3 of 12) -70278 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 158.5-3 chr1 203290805 203290922 + 2 NA Intergenic Intergenic 3163 NR_117098 100506775 Hs.443859 NR_117097 ENSG00000231507 LINC01353 - long intergenic non-protein coding RNA 1353 ncRNA 416-15 chr2 173098568 173098938 + 2 NA intron (NM_133646, intron 2 of 11) intron (NM_133646, intron 2 of 11) 22907 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 275-12 chr12 53830500 53830726 + 2 NA Intergenic Intergenic -73579 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 232-5 chr10 28511616 28511812 + 2 NA Intergenic Intergenic -15901 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 517-2 chr10 14375616 14375970 + 2 NA Intergenic LTR8|LTR|ERV1 7484 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 222-5 chr11 125953092 125953277 + 2 NA intron (NM_001365077, intron 6 of 11) intron (NM_001365077, intron 6 of 11) 7128 NM_001365077 338667 Hs.730137 NM_001365077 VSIG10L2 - V-set and immunoglobulin domain containing 10 like 2 protein-coding 281-2 chr1 27218099 27218251 + 2 NA Intergenic AluSx1|SINE|Alu -16457 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 459.5-11 chr2 12904320 12904625 + 2 NA Intergenic L1MD2|LINE|L1 102541 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 255-3 chr12 15652499 15652639 + 2 NA intron (NM_004447, intron 13 of 20) L1MA4|LINE|L1 105958 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 279-24 chr3 110780982 110781210 + 2 NA Intergenic Intergenic 288863 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 512-7 chr14 60021568 60022120 + 2 NA intron (NR_075071, intron 26 of 32) L1MB8|LINE|L1 -70067 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 339-20 chr20 6545581 6545894 + 2 NA Intergenic L1MB8|LINE|L1 119005 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 251-29 chr5 43833367 43833603 + 2 NA Intergenic Intergenic -230255 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 483-11 chr14 77141040 77141440 + 2 NA promoter-TSS (NM_001364172) promoter-TSS (NM_001364172) -496 NM_001364172 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 398-14 chr17 28124710 28124947 + 2 NA intron (NM_016231, intron 2 of 10) AluJb|SINE|Alu 82151 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 491-10 chr14 49274375 49274696 + 2 NA Intergenic Intergenic 311845 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 438-8 chr12 7702958 7703402 + 2 NA Intergenic AluSz|SINE|Alu -7405 NM_020634 9573 Hs.86232 NM_020634 ENSG00000184344 GDF3 KFS3|MCOP7|MCOPCB6 growth differentiation factor 3 protein-coding 234-24 chr7 112300878 112301118 + 2 NA intron (NM_021994, intron 4 of 11) (AATATT)n|Simple_repeat|Simple_repeat 94303 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 264-14 chr2 13795830 13796009 + 2 NA Intergenic L1M1|LINE|L1 605039 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 518-23 chr8 131854341 131854809 + 2 NA Intergenic L2a|LINE|L2 -49518 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 466.5-23 chr8 76096670 76097051 + 2 NA Intergenic L1M4c|LINE|L1 -309794 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 169-3 chr13 74804178 74804293 + 2 NA Intergenic L1MA3|LINE|L1 251392 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 839 chr1 26220512 26221142 + 2 NA Intergenic Intergenic -4493 NR_110698 101928303 Hs.375067 NR_110698 ENSG00000236155 LOC101928303 - uncharacterized LOC101928303 ncRNA 548-11 chr2 104935775 104936105 + 2 NA TTS (NR_110603) TTS (NR_110603) -63345 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 353-18 chr18 47163488 47163809 + 2 NA intron (NM_016097, intron 1 of 2) HAL1|LINE|L1 12716 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 470-18 chr2 101193037 101193362 + 2 NA Intergenic Intergenic 41539 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 477.5-8 chr12 9237570 9237870 + 2 NA Intergenic L2a|LINE|L2 1831 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 216-19 chr4 31487952 31488145 + 2 NA Intergenic L1MC3|LINE|L1 -18496 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 194.5-38 chrX 45788547 45788815 + 2 NA Intergenic Intergenic -41557 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 302-5 chr10 32741985 32742186 + 2 NA intron (NM_001321115, intron 29 of 43) L1M5|LINE|L1 159387 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 355.5-2 chr10 22086291 22086593 + 2 NA Intergenic Intergenic -82712 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 249-9 chr11 113414021 113414211 + 2 NA intron (NM_016574, intron 5 of 6) MIRb|SINE|MIR 26337 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 209-5 chr12 70810255 70810422 + 2 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -21418 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 272.5-4 chr10 58169478 58169695 + 2 NA Intergenic Intergenic 98308 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 230-10 chr14 73987159 73987287 + 2 NA intron (NM_001249, intron 4 of 15) intron (NM_001249, intron 4 of 15) 32065 NM_001321986 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 696-13 chr5 82610486 82610895 + 2 NA Intergenic MLT2A1|LTR|ERVL -229465 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 281-37 chr7 13330489 13330640 + 2 NA Intergenic (ATACAT)n|Simple_repeat|Simple_repeat 642931 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 342-42 chr8 132663699 132663953 + 2 NA intron (NR_135907, intron 1 of 10) MER115|DNA|hAT-Tip100 11719 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 398-6 chr13 22666662 22666979 + 2 NA Intergenic FRAM|SINE|Alu 231361 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 341.5 chr1 154600870 154601162 + 2 NA intron (NM_001111, intron 2 of 14) intron (NM_001111, intron 2 of 14) 5237 NM_001193495 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 621.5-7 chr4 39369564 39369899 + 2 NA Intergenic Intergenic -3369 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 331-25 chr18 8258598 8258812 + 2 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 108329 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 169-7 chr16 63369769 63369875 + 2 NA Intergenic Intergenic -1333384 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 244.5-44 chr9 14352874 14353021 + 2 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -30560 NR_161383 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 514-15 chr3 143838836 143839220 + 2 NA intron (NM_173653, intron 1 of 15) intron (NM_173653, intron 1 of 15) 9440 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 292-35 chr9 38691145 38691297 + 2 NA Intergenic Intergenic 70133 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 457-22 chr5 17165792 17166121 + 2 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -9964 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 454-4 chr12 43602744 43603090 + 2 NA Intergenic Intergenic -50714 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 276-40 chr5 140556625 140556776 + 2 NA intron (NM_001035235, intron 2 of 4) L2a|LINE|L2 756 NR_045587 10011 Hs.653135 NM_001035235 ENSG00000213523 SRA1 SRA|SRAP|STRAA1|pp7684 steroid receptor RNA activator 1 protein-coding 419.5-21 chr8 134570301 134570549 + 2 NA intron (NM_020863, intron 10 of 15) L2a|LINE|L2 -27646 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 346-25 chr3 24250902 24251122 + 2 NA intron (NM_001354708, intron 2 of 9) L1M5|LINE|L1 99688 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 399-31 chr5 110037183 110037486 + 2 NA Intergenic Intergenic 154152 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 377-22 chr3 60504269 60504493 + 2 NA intron (NM_001320900, intron 6 of 9) AluSc5|SINE|Alu 113489 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 551-29 chrX 153680348 153680743 + 2 NA intron (NM_001366975, intron 2 of 12) MSTB|LTR|ERVL-MaLR -6184 NM_001039582 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 575-7 chr20 13834900 13835284 + 2 NA Intergenic AluSq2|SINE|Alu 50064 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 372-13 chr12 129419141 129419477 + 2 NA intron (NM_133448, intron 3 of 8) MLT1K|LTR|ERVL-MaLR 210708 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 369-20 chr2 72537734 72538043 + 2 NA intron (NR_135774, intron 8 of 19) MamRTE1|LINE|RTE-BovB 288145 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 273-34 chr9 109696909 109697156 + 2 NA intron (NM_001037293, intron 1 of 6) LTR16A1|LTR|ERVL 56244 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 523-17 chr2 241242909 241243293 + 2 NA intron (NM_001243900, intron 16 of 27) L1MEc|LINE|L1 28864 NM_001320966 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 357-9 chr11 28557993 28558203 + 2 NA Intergenic Intergenic -80550 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 151-7 chr21 18054199 18054274 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) 136896 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 338-34 chr7 53344689 53345005 + 2 NA Intergenic Intergenic 309214 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 469.5-2 chr1 164813453 164813777 + 2 NA intron (NM_001204961, intron 6 of 7) intron (NM_001204961, intron 6 of 7) -38974 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 822.5-7 chr8 119395931 119396685 + 2 NA Intergenic Intergenic -20138 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 403-7 chr10 24271133 24271521 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -4358 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 301-12 chr11 130453539 130453715 + 2 NA intron (NM_139055, intron 1 of 7) AluJr|SINE|Alu 4653 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 305.5-37 chr7 44217428 44217663 + 2 NA 3' UTR (NM_001293170, exon 21 of 21) 3' UTR (NM_001293170, exon 21 of 21) 16567 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 209-25 chr6 125581341 125581456 + 2 NA Intergenic MIR|SINE|MIR -92955 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 222-22 chr4 53609978 53610122 + 2 NA Intergenic MIR|SINE|MIR 17094 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 324.5-9 chr11 9498779 9499040 + 2 NA intron (NM_001282656, intron 10 of 15) intron (NM_001282656, intron 10 of 15) 37897 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 431.5-23 chr8 43712683 43712933 + 2 NA Intergenic ALR/Alpha|Satellite|centr 420366 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 462-25 chr3 50770342 50770674 + 2 NA intron (NM_004947, intron 1 of 52) L1MA1|LINE|L1 95428 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 252-25 chr6 140618186 140618413 + 2 NA Intergenic L1MD1|LINE|L1 -65515 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 119 chr14 27221017 27221113 + 2 NA Intergenic MER51B|LTR|ERV1 312423 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 256.5-8 chr14 86938970 86939211 + 2 NA Intergenic Intergenic 33312 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 575-2 chr11 43381940 43382439 + 2 NA intron (NM_001307943, intron 2 of 19) L1MEi|LINE|L1 23269 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 389-6 chr12 38726620 38726996 + 2 NA intron (NM_153634, intron 11 of 19) intron (NM_153634, intron 11 of 19) 178783 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 425-34 chr5 36926660 36927044 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 50083 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 381.5-10 chr2 81427064 81427503 + 2 NA Intergenic Intergenic 39663 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 258.5-32 chrM 8090 8241 + 2 NA promoter-TSS (NR_162149).2 promoter-TSS (NR_162149).2 -651 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 574-4 chr11 120768722 120769068 + 2 NA intron (NM_001282470, intron 2 of 19) L1MA9|LINE|L1 50220 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 436-32 chr9 33140104 33140383 + 2 NA intron (NM_001497, intron 1 of 5) intron (NM_001497, intron 1 of 5) -26705 NR_108109 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 271-22 chr4 129662228 129662417 + 2 NA Intergenic L1MEd|LINE|L1 109156 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 594.5-4 chr14 64101810 64102174 + 2 NA exon (NM_182914, exon 64 of 116) exon (NM_182914, exon 64 of 116) -6867 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 317.5-4 chr1 212443215 212443426 + 2 NA intron (NM_013349, intron 2 of 3) intron (NM_013349, intron 2 of 3) 10400 NR_026598 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 222.5-20 chr3 182460113 182460293 + 2 NA intron (NR_040105, intron 2 of 3) intron (NR_040105, intron 2 of 3) 26159 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 165.5-3 chr10 47135874 47136060 + 2 NA Intergenic MLT2F|LTR|ERVL -164230 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 219-33 chr7 28826029 28826193 + 2 NA TTS (NM_004904) TTS (NM_004904) 132219 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 268 chr1 113781122 113781423 + 2 NA intron (NM_018364, intron 2 of 6) intron (NM_018364, intron 2 of 6) -21384 NM_001323042 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 630-10 chr16 57836850 57837460 + 2 NA Intergenic Intergenic 26518 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 190-17 chr8 114551514 114551722 + 2 NA Intergenic Intergenic -1114679 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 451-5 chr10 94743428 94743855 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -19040 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 214-7 chr14 65058058 65058221 + 2 NA intron (NM_002028, intron 11 of 11) L1ME3Cz|LINE|L1 13451 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 370.5-12 chr2 16943110 16943582 + 2 NA Intergenic Intergenic -277512 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 400-22 chr4 66498676 66499012 + 2 NA Intergenic Intergenic 222020 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 387.5-17 chr22 25104003 25104359 + 2 NA intron (NR_038941, intron 4 of 4) AluSx1|SINE|Alu 8511 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 218-35 chr8 35484531 35484664 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -59795 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 310-45 chr8 129371358 129371627 + 2 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 112650 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 637-7 chr4 46819615 46820060 + 2 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 89408 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 219.5-43 chr9 30713595 30713776 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -305231 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 370-38 chr9 134756125 134756486 + 2 NA intron (NM_001278074, intron 16 of 65) intron (NM_001278074, intron 16 of 65) 93064 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 486.5-7 chr16 87010309 87010726 + 2 NA Intergenic MIR|SINE|MIR -47267 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 119.5-2 chr12 96657229 96657355 + 2 NA intron (NM_001306084, intron 36 of 67) intron (NM_001306084, intron 36 of 67) 167715 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 504-6 chr10 67955229 67955644 + 2 NA intron (NM_001278185, intron 18 of 23) intron (NM_001278185, intron 18 of 23) 55447 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 340-4 chr1 224164592 224164899 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -18495 NM_003676 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 227.5-3 chr1 223859261 223859428 + 2 NA Intergenic AluJb|SINE|Alu -13372 NM_005426 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 354-21 chr22 29054945 29055251 + 2 NA 3' UTR (NM_032173, exon 9 of 9) 3' UTR (NM_032173, exon 9 of 9) 6821 NM_015370 25770 Hs.50891 NM_015370 ENSG00000100249 C22orf31 HS747E2A|bK747E2.1 chromosome 22 open reading frame 31 protein-coding 355-43 chr8 126403752 126403977 + 2 NA Intergenic AluSq|SINE|Alu 78369 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 337.5-20 chr22 47484952 47485241 + 2 NA intron (NR_109967, intron 1 of 2) intron (NR_109967, intron 1 of 2) 2015 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 365-16 chr20 4817327 4817669 + 2 NA intron (NM_014737, intron 2 of 11) MER63D|DNA|hAT-Blackjack -2375 NM_170774 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 416.5-6 chr11 40440962 40441492 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -148097 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 467-24 chr7 42761630 42762019 + 2 NA Intergenic Intergenic -55377 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 175-14 chr6 54368088 54368196 + 2 NA intron (NM_014464, intron 9 of 10) intron (NM_014464, intron 9 of 10) 59701 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 393-17 chr2 105665228 105665458 + 2 NA Intergenic L1ME2|LINE|L1 -54784 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 512.5-11 chr9 75622055 75622344 + 2 NA Intergenic L1PREC2|LINE|L1 -268445 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 231-8 chr14 68008848 68009053 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 185358 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 552-17 chr4 173237401 173237907 + 2 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -30506 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 317.5-37 chr8 83458341 83458538 + 2 NA Intergenic Intergenic 54681 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 496-24 chr7 22125612 22126032 + 2 NA intron (NM_012294, intron 24 of 25) intron (NM_012294, intron 24 of 25) 67923 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 570-9 chr13 49256869 49257358 + 2 NA intron (NR_036439, intron 3 of 8) intron (NR_036439, intron 3 of 8) 9188 NM_001193478 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 262-9 chr11 58548101 58548345 + 2 NA intron (NM_001307951, intron 6 of 7) HAL1|LINE|L1 27694 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 395-15 chr19 28029823 28030123 + 2 NA Intergenic L1MC5|LINE|L1 -236033 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 280-16 chr17 14344096 14344346 + 2 NA intron (NR_130138, intron 1 of 2) intron (NR_130138, intron 1 of 2) 40481 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 617-2 chr11 15807752 15808199 + 2 NA Intergenic Intergenic 161646 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 513-26 chr5 168525326 168525599 + 2 NA Intergenic Intergenic -3843 NM_001355274 345630 Hs.166262 NM_001355274 ENSG00000188573 FBLL1 - fibrillarin like 1 protein-coding 805.5 chr19 28186484 28187104 + 2 NA Intergenic Intergenic -392854 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 727-2 chr1 86089651 86090263 + 2 NA intron (NM_152890, intron 6 of 59) intron (NM_152890, intron 6 of 59) 66514 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 195.5-6 chr10 57849129 57849321 + 2 NA Intergenic L1ME3A|LINE|L1 418669 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 389.5-6 chr1 189052217 189052491 + 2 NA Intergenic L1PA16|LINE|L1 1423656 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 428-28 chr7 95723110 95723406 + 2 NA Intergenic Intergenic -49248 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 645-6 chr14 63527850 63528402 + 2 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) -14658 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 244-4 chr12 8985672 8985822 + 2 NA intron (NR_137427, intron 1 of 2) MER21A|LTR|ERVL -3799 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 317-7 chr10 103839193 103839506 + 2 NA intron (NM_014631, intron 1 of 13) intron (NM_014631, intron 1 of 13) 16057 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 618.5-7 chr5 115091806 115092363 + 2 NA Intergenic Intergenic 77824 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 432-10 chr17 1844524 1844794 + 2 NA exon (NM_001355121, exon 4 of 16) exon (NM_001355121, exon 4 of 16) 14654 NM_001355121 6117 Hs.461925 NM_002945 ENSG00000132383 RPA1 HSSB|MST075|REPA1|RF-A|RP-A|RPA70 replication protein A1 protein-coding 499-10 chr22 41156306 41156776 + 2 NA intron (NM_001429, intron 17 of 30) AluSz|SINE|Alu 40960 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 373-32 chr3 183131540 183131768 + 2 NA intron (NM_014398, intron 5 of 5) intron (NM_014398, intron 5 of 5) 31080 NM_014398 27074 Hs.518448 NM_014398 ENSG00000078081 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal associated membrane protein 3 protein-coding 443-11 chr17 49188086 49188351 + 2 NA Intergenic L1ME2|LINE|L1 21163 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 923-2 chr21 17925298 17925831 + 2 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 8224 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 293.5-29 chr6 169712564 169712731 + 2 NA intron (NM_018288, intron 7 of 11) intron (NM_018288, intron 7 of 11) 10521 NM_001317342 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 - chromosome 6 open reading frame 120 protein-coding 284.5-25 chr2 171767223 171767533 + 2 NA Intergenic L1MC5|LINE|L1 79623 NM_001271787 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 497.5-12 chr3 184291842 184292138 + 2 NA intron (NM_014693, intron 18 of 18) intron (NM_014693, intron 18 of 18) -7251 NM_002808 5708 Hs.518464 NM_002808 ENSG00000175166 PSMD2 P97|RPN1|S2|TRAP2 proteasome 26S subunit, non-ATPase 2 protein-coding 338.5-37 chr9 94298805 94299011 + 2 NA intron (NM_194320, intron 4 of 4) intron (NM_194320, intron 4 of 4) 29736 NM_017561 54754 Hs.648183 NM_017561 ENSG00000130950 NUTM2F FAM22F|NUTMF NUT family member 2F protein-coding 595-12 chr3 187526013 187526365 + 2 NA Intergenic L1M8|LINE|L1 79143 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 217-28 chr8 94753398 94753606 + 2 NA intron (NM_181787, intron 6 of 18) LTR103b_Mam|LTR|ERV1? 33602 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 494.5-2 chr10 71015067 71015373 + 2 NA Intergenic L1ME4b|LINE|L1 76167 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 519.5-4 chr15 97448463 97448817 + 2 NA intron (NR_120324, intron 2 of 4) LTR1D1|LTR|ERV1 73171 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 428-21 chr3 76129813 76130116 + 2 NA Intergenic Intergenic -344415 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 320-35 chr8 94789465 94789729 + 2 NA intron (NM_181787, intron 18 of 18) intron (NM_181787, intron 18 of 18) -33690 NM_017864 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 454-9 chr15 68165922 68166309 + 2 NA intron (NM_016166, intron 8 of 13) intron (NM_016166, intron 8 of 13) 39995 NM_001286695 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 238-17 chr17 63685004 63685202 + 2 NA intron (NM_203351, intron 8 of 16) MIR3|SINE|MIR 15022 NM_030576 80774 Hs.591166 NM_030576 ENSG00000136490 LIMD2 - LIM domain containing 2 protein-coding 281.5-37 chr8 56997761 56997965 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -3996 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 687-6 chr16 46920171 46920552 + 2 NA intron (NM_001142466, intron 8 of 11) intron (NM_001142466, intron 8 of 11) -33887 NR_145840 109623466 NR_145840 SNORD148 - small nucleolar RNA, C/D box 148 snoRNA 629.5-3 chr11 115299416 115299780 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -33979 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 319-15 chr17 61953609 61953904 + 2 NA intron (NM_005121, intron 26 of 29) MLT1D|LTR|ERVL-MaLR -25774 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 159.5 chr1 170067408 170067522 + 2 NA intron (NM_014970, intron 1 of 19) L1MB5|LINE|L1 1450 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 490-16 chr22 27385815 27386217 + 2 NA Intergenic X7C_LINE|LINE|CR1 75365 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 485.5-17 chr5 119189288 119189564 + 2 NA intron (NM_001290321, intron 28 of 43) intron (NM_001290321, intron 28 of 43) 34789 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 503-29 chr8 105114849 105115139 + 2 NA Intergenic Intergenic -203444 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 389.5-12 chr15 58007816 58008259 + 2 NA intron (NM_170696, intron 4 of 11) intron (NM_170696, intron 4 of 11) 5986 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 335-50 chr8 26006159 26006467 + 2 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 39100 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 422-29 chr8 94743524 94744010 + 2 NA intron (NM_181787, intron 6 of 18) AluSx1|SINE|Alu 23867 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 340.5-5 chr10 79955356 79955584 + 2 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat -6365 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 503.5-11 chr4 8094587 8094887 + 2 NA intron (NM_001130084, intron 3 of 19) LTR2|LTR|ERV1 -22749 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 617.5-6 chr14 43607445 43607901 + 2 NA Intergenic Intergenic 899610 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 289-28 chr3 66227724 66227934 + 2 NA intron (NM_001350992, intron 1 of 8) intron (NM_001350992, intron 1 of 8) 6826 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 554-26 chr8 63493373 63493753 + 2 NA Intergenic Intergenic 27714 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 333-34 chr6 154440796 154441095 + 2 NA intron (NM_001368116, intron 4 of 12) intron (NM_001368116, intron 4 of 12) -6872 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 220.5-37 chr9 13227934 13228091 + 2 NA intron (NM_003829, intron 3 of 45) L2c|LINE|L2 51552 NM_003829 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 238-31 chr5 93248117 93248347 + 2 NA Intergenic MIR|SINE|MIR 323111 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 259.5-9 chr14 60522206 60522440 + 2 NA Intergenic L1ME4b|LINE|L1 13177 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 287-4 chr1 160142919 160143095 + 2 NA 3' UTR (NM_000702, exon 23 of 23) 3' UTR (NM_000702, exon 23 of 23) -8555 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 444.5-11 chr3 99338157 99338538 + 2 NA Intergenic L1MA8|LINE|L1 -300247 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 342.5-24 chr3 123803282 123803628 + 2 NA intron (NM_001321309, intron 3 of 32) MIR3|SINE|MIR 80877 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 225-6 chr11 18451219 18451534 + 2 NA TTS (NM_002301) TTS (NM_002301) -4480 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 487.5-2 chr1 50057679 50058192 + 2 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) 9880 NM_001144777 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 242-25 chr4 175418279 175418509 + 2 NA Intergenic L1MA7|LINE|L1 369282 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 472-16 chr5 44620544 44620863 + 2 NA Intergenic CR1-16_AMi|LINE|CR1 -110421 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 395-24 chr5 36043444 36043770 + 2 NA intron (NR_031764, intron 3 of 5) L1MA3|LINE|L1 23275 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 290.5-16 chr2 89833242 89833445 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -195436 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 383-10 chr13 48956085 48956316 + 2 NA Intergenic Intergenic -19712 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 364-3 chr1 223111019 223111404 + 2 NA exon (NM_003268, exon 6 of 6) exon (NM_003268, exon 6 of 6) 32037 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 411-11 chr11 63746195 63746538 + 2 NA intron (NM_001265589, intron 3 of 8) L1MC4|LINE|L1 22409 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 309-10 chr14 63146683 63147099 + 2 NA Intergenic L1MA5|LINE|L1 -57552 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 298-14 chr2 160752851 160753082 + 2 NA Intergenic Intergenic -259159 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 433.5-7 chr12 86521614 86521905 + 2 NA intron (NM_001351285, intron 2 of 8) L1PA13|LINE|L1 223390 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 377-28 chr7 35640261 35640581 + 2 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 54714 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 359.5-12 chr14 48089080 48089471 + 2 NA Intergenic Intergenic -294261 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 272-14 chr2 41428534 41428803 + 2 NA Intergenic Intergenic -448887 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 484-26 chr4 7672594 7673041 + 2 NA intron (NM_020777, intron 8 of 26) MLT1J|LTR|ERVL-MaLR -81273 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 266-43 chr9 36124852 36125021 + 2 NA TTS (NM_001316345) TTS (NM_001316345) -11600 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 494-3 chr11 8388550 8388842 + 2 NA Intergenic Intergenic -119909 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 525.5-5 chr14 77222962 77223284 + 2 NA intron (NM_020431, intron 5 of 23) MIRb|SINE|MIR 41325 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 274-23 chr3 195418388 195418619 + 2 NA intron (NM_012287, intron 1 of 22) AluJr|SINE|Alu 24517 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 288-35 chr6 64231087 64231257 + 2 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 424336 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 547-3 chr11 67362484 67362975 + 2 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) -9133 NR_046413 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 464-8 chr15 99920422 99920752 + 2 NA Intergenic L1MB7|LINE|L1 113564 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 629-6 chr16 56328360 56328703 + 2 NA intron (NM_138736, intron 3 of 7) intron (NM_138736, intron 3 of 7) 83011 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 274-3 chr1 222447869 222448111 + 2 NA Intergenic Intergenic 100114 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 388 chr1 66218661 66218931 + 2 NA intron (NM_001037340, intron 1 of 14) L2b|LINE|L2 -113312 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 450-19 chr7 17721379 17721721 + 2 NA Intergenic Intergenic -162641 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 453-9 chr16 7011969 7012417 + 2 NA intron (NM_001142334, intron 1 of 13) MIRb|SINE|MIR 238384 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 622-4 chr13 111285650 111286111 + 2 NA intron (NM_001354054, intron 16 of 20) intron (NM_001354054, intron 16 of 20) -30305 NM_001303133 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 268-3 chr10 77357777 77357995 + 2 NA intron (NR_126365, intron 3 of 5) intron (NR_126365, intron 3 of 5) 7014 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 476.5-12 chr3 191344746 191345167 + 2 NA intron (NM_178335, intron 1 of 11) intron (NM_178335, intron 1 of 11) -14420 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 233-24 chr5 4211362 4211504 + 2 NA Intergenic Intergenic -562048 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 273.5-26 chr6 158061587 158061869 + 2 NA intron (NM_003898, intron 7 of 26) intron (NM_003898, intron 7 of 26) 44635 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 434-15 chr3 188649164 188649483 + 2 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -39458 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 367-34 chr7 137321852 137322220 + 2 NA intron (NM_001321387, intron 1 of 4) L2a|LINE|L2 21697 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 328-17 chr16 630207 630454 + 2 NA promoter-TSS (NM_053284) promoter-TSS (NM_053284) -655 NM_053284 117166 Hs.345818 NM_053284 ENSG00000127578 WFIKKN1 C16orf12|RJD2|WFDC20A|WFIKKN WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 protein-coding 247-7 chr14 72670107 72670335 + 2 NA 3' UTR (NM_012074, exon 9 of 10) 3' UTR (NM_012074, exon 9 of 10) 153401 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 305-15 chr14 43725248 43725495 + 2 NA Intergenic Intergenic 781912 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 409.5 chr1 99106437 99106660 + 2 NA intron (NR_033940, intron 1 of 2) L1M1|LINE|L1 -101687 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 566.5-9 chr8 80297754 80298357 + 2 NA Intergenic Intergenic 56666 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 603-5 chr14 56757987 56758538 + 2 NA Intergenic Intergenic 47405 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 228-10 chr3 108824447 108824629 + 2 NA intron (NM_001317747, intron 1 of 4) L1ME4c|LINE|L1 1752 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 356-15 chr16 60861106 60861399 + 2 NA Intergenic Intergenic 194514 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 261 chr1 57447144 57447307 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -22304 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 435-2 chr1 152420743 152420989 + 2 NA Intergenic Intergenic -6603 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 349-18 chr17 65150568 65150871 + 2 NA intron (NM_003835, intron 1 of 18) intron (NM_003835, intron 1 of 18) 13349 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 376-23 chr5 37071631 37071842 + 2 NA Intergenic Intergenic -177310 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 274-13 chr16 9398938 9399168 + 2 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 43465 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 521-15 chr6 35506954 35507409 + 2 NA intron (NM_001289395, intron 7 of 13) MLT1F|LTR|ERVL-MaLR 5715 NM_001289395 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 319-29 chr3 120396514 120396818 + 2 NA promoter-TSS (NR_029584) promoter-TSS (NR_029584) -937 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 223-14 chr16 19056302 19056459 + 2 NA intron (NR_136733, intron 13 of 14) AluSq|SINE|Alu 11103 NR_119382 102723385 Hs.569608 NR_119379 ENSG00000261465 LOC102723385 - uncharacterized LOC102723385 ncRNA 314-25 chr22 41817672 41817903 + 2 NA intron (NM_024821, intron 6 of 6) HERVL40-int|LTR|ERVL -15318 NR_103834 6721 Hs.443258 NM_004599 ENSG00000198911 SREBF2 SREBP-2|SREBP2|bHLHd2 sterol regulatory element binding transcription factor 2 protein-coding 383-36 chr7 100975430 100975820 + 2 NA intron (NM_001164462, intron 1 of 11) intron (NM_001164462, intron 1 of 11) 6002 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 322.5-2 chr1 98059951 98060238 + 2 NA Intergenic Intergenic -10401 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 481.5-16 chr7 125575402 125575735 + 2 NA Intergenic L2|LINE|L2 -311277 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 383-17 chr2 215745986 215746212 + 2 NA intron (NR_037195, intron 3 of 9) MLT1F2|LTR|ERVL-MaLR 28056 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 547-4 chr14 26061622 26062169 + 2 NA Intergenic Intergenic 491535 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 168-12 chr3 183702429 183702537 + 2 NA intron (NM_001351371, intron 1 of 21) intron (NM_001351371, intron 1 of 21) 4665 NM_001351370 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 293.5-2 chr1 189214049 189214431 + 2 NA Intergenic Intergenic 1261770 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 210-13 chr2 45029603 45029746 + 2 NA Intergenic Intergenic -20222 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 292.5-8 chr13 33337592 33337798 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -2429 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 477-3 chr10 111056662 111057072 + 2 NA Intergenic L1MA9|LINE|L1 -20162 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 338.5-34 chr7 158086457 158086695 + 2 NA intron (NM_130843, intron 9 of 21) Tigger17c|DNA|TcMar-Tigger 231991 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 297-8 chr12 18078005 18078214 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 12084 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 336.5-4 chr1 198134881 198135122 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -21997 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 513.5-14 chr3 71521625 71521942 + 2 NA intron (NR_146142, intron 2 of 19) MER102b|DNA|hAT-Charlie 20306 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 540-20 chr6 75091070 75091566 + 2 NA intron (NM_080645, intron 47 of 50) intron (NM_080645, intron 47 of 50) 37464 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 355-37 chr7 2799867 2800162 + 2 NA intron (NM_001293092, intron 1 of 2) L1MD1|LINE|L1 15216 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 428-25 chr6 143538933 143539227 + 2 NA Intergenic Intergenic 22971 NR_110148 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 250-23 chr2 233361074 233361229 + 2 NA intron (NM_152879, intron 1 of 29) intron (NM_152879, intron 1 of 29) 6657 NM_152879 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 285-27 chr7 46244912 46245109 + 2 NA Intergenic MERX|DNA|TcMar-Tigger -323738 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 159 chr11 108019334 108019428 + 2 NA intron (NM_003478, intron 1 of 18) intron (NM_003478, intron 1 of 18) 10483 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 854-7 chr2 103982687 103983357 + 2 NA Intergenic Intergenic 425310 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 543-15 chr8 40916252 40916743 + 2 NA Intergenic Intergenic -18671 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 281-28 chr3 119739056 119739313 + 2 NA intron (NM_033364, intron 11 of 17) intron (NM_033364, intron 11 of 17) 36162 NM_001320318 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 485-18 chr9 32656261 32656631 + 2 NA Intergenic L1PA14|LINE|L1 -20777 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 314-8 chr12 39175094 39175328 + 2 NA Intergenic Intergenic 267909 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 186.5-20 chr3 257318 257508 + 2 NA intron (NM_001253387, intron 2 of 26) AluSx1|SINE|Alu 59524 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 251-28 chr5 16009889 16010127 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 74826 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 305-48 chr9 95501590 95501922 + 2 NA intron (NM_000264, intron 2 of 23) intron (NM_000264, intron 2 of 23) 5443 NM_001083607 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 304-27 chr3 158867417 158867772 + 2 NA Intergenic Intergenic 65540 NM_001289407 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 376-19 chr20 43444468 43444833 + 2 NA Intergenic AluSx1|SINE|Alu -13246 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 474-17 chr3 58071386 58071848 + 2 NA intron (NM_001164318, intron 1 of 45) intron (NM_001164318, intron 1 of 45) 63195 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 298-6 chr11 6005431 6005625 + 2 NA Intergenic Intergenic -2336 NM_001005179 120793 Hs.553571 NM_001005179 ENSG00000183389 OR56A4 OR11-49 olfactory receptor family 56 subfamily A member 4 protein-coding 399 chr1 28317797 28318080 + 2 NA Intergenic Intergenic -11102 NM_017638 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 269-26 chr3 101363992 101364211 + 2 NA intron (NM_020654, intron 10 of 23) AluJo|SINE|Alu -43526 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 388-3 chr1 201422713 201423122 + 2 NA Intergenic Intergenic -1187 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 391-20 chr4 43579054 43579392 + 2 NA Intergenic Intergenic -86680 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 496-17 chr20 18261515 18261849 + 2 NA Intergenic AluSp|SINE|Alu -26546 NM_001283003 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 876.5 chr1 45718120 45718600 + 2 NA intron (NM_001145349, intron 6 of 9) intron (NM_001145349, intron 6 of 9) 30179 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 524-14 chr3 59808957 59809441 + 2 NA intron (NM_001354590, intron 7 of 8) MLT1C|LTR|ERVL-MaLR -150702 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 315.5-20 chr2 73527772 73528056 + 2 NA intron (NM_015120, intron 11 of 22) L1MA3|LINE|L1 70811 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 446.5-16 chr4 115235685 115235996 + 2 NA Intergenic Intergenic -122220 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 203.5-8 chr14 30386557 30386779 + 2 NA Intergenic L2b|LINE|L2 -172455 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 388.5-23 chr6 136332789 136333000 + 2 NA Intergenic LTR67B|LTR|ERVL -43043 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 776.5-3 chr3 122575434 122576183 + 2 NA TTS (NM_138287) TTS (NM_138287) -1842 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 305-39 chr4 64105484 64105721 + 2 NA Intergenic Intergenic 303848 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 475-32 chr8 104728206 104728556 + 2 NA Intergenic Intergenic -139357 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 465.5-24 chr9 131580174 131580582 + 2 NA exon (NM_001304275, exon 23 of 24) exon (NM_001304275, exon 23 of 24) 34855 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 267.5-27 chr8 75456092 75456354 + 2 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 48574 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 621-11 chr3 63287163 63287660 + 2 NA intron (NM_001130003, intron 2 of 5) L2b|LINE|L2 9103 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 521-22 chr9 10746066 10746595 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 133124 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 277.5-27 chr5 129501081 129501304 + 2 NA intron (NM_133638, intron 2 of 22) A-rich|Low_complexity|Low_complexity -40503 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 580.5-9 chr7 86867490 86867835 + 2 NA Intergenic L1MA7|LINE|L1 98237 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 486-35 chr5 25572910 25573439 + 2 NA Intergenic MER4B-int|LTR|ERV1 382221 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 384.5-2 chr1 28070265 28070704 + 2 NA intron (NM_001282562, intron 1 of 16) AluSx1|SINE|Alu 18126 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 535.5-8 chr18 70696796 70697451 + 2 NA Intergenic AluSg4|SINE|Alu -46169 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 307.5-38 chr7 51850618 51850875 + 2 NA Intergenic (ATATAC)n|Simple_repeat|Simple_repeat -457490 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 443-3 chr1 84464642 84465002 + 2 NA Intergenic L2c|LINE|L2 -14444 NM_025065 80135 Hs.481202 NM_025065 ENSG00000117133 RPF1 BXDC5 ribosome production factor 1 homolog protein-coding 238-20 chr18 35234165 35234365 + 2 NA Intergenic Intergenic -6769 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 581-18 chr7 39156681 39157189 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -143368 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 250-26 chr21 16236113 16236441 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 41898 NR_027791 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 349.5-24 chr4 131001458 131001870 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 625303 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 252-12 chr17 49157475 49157719 + 2 NA intron (NM_153446, intron 5 of 10) AluSz|SINE|Alu 24828 NM_001159387 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 698-13 chr7 44883134 44883803 + 2 NA 3' UTR (NM_033224, exon 1 of 1) 3' UTR (NM_033224, exon 1 of 1) -1668 NR_039801 100616393 NR_039801 ENSG00000284261 MIR4657 mir-4657 microRNA 4657 ncRNA 605-2 chr11 111820298 111820770 + 2 NA intron (NR_147984, intron 13 of 15) MSTD|LTR|ERVL-MaLR 50747 NM_001352419 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 361-25 chr4 61810316 61810594 + 2 NA intron (NM_001371343, intron 8 of 23) MIR3|SINE|MIR 351310 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 451-3 chr1 196616373 196616948 + 2 NA Intergenic Intergenic -8220 NM_198503 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 203-17 chr3 36059575 36059691 + 2 NA Intergenic L1MC3|LINE|L1 315157 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 409-18 chr21 27340166 27340545 + 2 NA Intergenic Intergenic -373267 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 263.5-20 chr5 31208723 31208988 + 2 NA intron (NM_001362435, intron 1 of 10) MamRTE1|LINE|RTE-BovB 15169 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 692 chr1 195267634 195268190 + 2 NA Intergenic L1MA10|LINE|L1 820803 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 404-8 chr10 53309472 53309801 + 2 NA Intergenic Intergenic -537936 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 190-10 chr22 25037748 25037869 + 2 NA intron (NM_001145206, intron 2 of 10) L1MB5|LINE|L1 9834 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 236-32 chr7 37959250 37959478 + 2 NA Intergenic MIRb|SINE|MIR 38045 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 507-22 chr4 25206945 25207199 + 2 NA Intergenic Intergenic -26961 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 491-16 chr3 71613898 71614234 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -30077 NM_001012505 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 388-8 chr10 127092116 127092456 + 2 NA intron (NM_001290223, intron 23 of 51) intron (NM_001290223, intron 23 of 51) 104305 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 281-25 chr21 44032082 44032260 + 2 NA exon (NM_003274, exon 2 of 23) exon (NM_003274, exon 2 of 23) 19862 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 418-34 chr9 28176308 28176626 + 2 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 542838 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 170-19 chr6 73380034 73380180 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -10315 NM_001080507 441161 Hs.671212 NM_001080507 ENSG00000203907 OOEP C6orf156|FLOPED|HOEP19|KHDC2 oocyte expressed protein protein-coding 356-7 chr12 19834838 19835134 + 2 NA Intergenic Intergenic -179699 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 274-12 chr15 86839181 86839330 + 2 NA intron (NM_152336, intron 23 of 24) MamRep605|LTR?|LTR? -93625 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 508-18 chr22 45125156 45125587 + 2 NA Intergenic Intergenic 27213 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 261-26 chr7 7498466 7498645 + 2 NA intron (NM_001037763, intron 11 of 34) L1MB4|LINE|L1 37318 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 409-29 chr6 37402091 37402463 + 2 NA Intergenic Intergenic -30944 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 321.5-20 chr2 57792350 57792564 + 2 NA Intergenic L1MA1|LINE|L1 -115194 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 280-13 chr14 34168934 34169151 + 2 NA Intergenic Intergenic -217968 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 260-18 chr2 213255035 213255170 + 2 NA Intergenic Intergenic 29107 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 515-21 chrUn_GL000216v2 69266 69549 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 313 chr1 100876717 100876943 + 2 NA exon (NM_001261441, exon 5 of 6) exon (NM_001261441, exon 5 of 6) 18012 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 694-8 chr3 52470727 52471254 + 2 NA intron (NM_007184, intron 4 of 20) intron (NM_007184, intron 4 of 20) 15386 NM_001276294 11188 Hs.435290 NM_007184 ENSG00000010322 NISCH I-1|IR1|IRAS|hIRAS nischarin protein-coding 666-3 chr1 168796301 168796727 + 2 NA Intergenic L1ME1|LINE|L1 9573 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 471.5-10 chr2 18456079 18456565 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 104331 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 490-4 chr11 108636422 108636755 + 2 NA Intergenic Intergenic -28481 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 296.5-28 chr4 141033630 141033976 + 2 NA intron (NM_020724, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 99666 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 414-37 chr7 39985513 39985880 + 2 NA intron (NM_003718, intron 1 of 13) intron (NM_003718, intron 1 of 13) 35336 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 494-10 chr2 40016075 40016576 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 98691 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 395-12 chr17 66144903 66145232 + 2 NA intron (NM_001353129, intron 4 of 26) L1ME1|LINE|L1 46825 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 392-24 chr3 41065436 41065707 + 2 NA Intergenic LTR16A1|LTR|ERVL -133934 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 349-6 chr1 166460523 166460893 + 2 NA Intergenic L1MA7|LINE|L1 29331 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 700-11 chr5 87023340 87023694 + 2 NA Intergenic L1PB2|LINE|L1 91437 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 582-6 chr12 58261758 58262194 + 2 NA Intergenic Intergenic 174084 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 298-13 chr2 26501191 26501431 + 2 NA intron (NM_194248, intron 8 of 46) L1ME4a|LINE|L1 -23187 NM_194323 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 554-17 chr3 44338904 44339495 + 2 NA intron (NM_001282914, intron 1 of 10) intron (NM_001282914, intron 1 of 10) 433 NM_173826 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 501.5-7 chr13 91858366 91858710 + 2 NA intron (NM_004466, intron 5 of 7) L1M1|LINE|L1 459917 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 200-16 chr4 42274818 42274954 + 2 NA Intergenic Intergenic 116382 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 240-46 chr8 117734633 117734899 + 2 NA Intergenic Intergenic 186147 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 205-22 chr5 101302001 101302184 + 2 NA Intergenic Intergenic -398810 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 612-8 chr20 5915334 5915934 + 2 NA intron (NM_001819, intron 1 of 4) intron (NM_001819, intron 1 of 4) 4124 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 294.5-4 chr1 112987203 112987440 + 2 NA Intergenic MER57F|LTR|ERV1 30906 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 333.5-12 chr20 51536427 51536729 + 2 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 6141 NM_173091 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 483-13 chr19 38061639 38062006 + 2 NA intron (NM_015073, intron 2 of 21) intron (NM_015073, intron 2 of 21) -101274 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 211-32 chr9 118884641 118884787 + 2 NA Intergenic Intergenic 205043 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 400.5-15 chr22 36909755 36910234 + 2 NA Intergenic L1PA16|LINE|L1 -3634 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 265-25 chr22 19562534 19562826 + 2 NA Intergenic LTR78B|LTR|ERV1 4159 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 549.5-6 chr18 73073868 73074432 + 2 NA Intergenic Intergenic 190348 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 616.5-17 chr6 166329101 166329502 + 2 NA intron (NR_130113, intron 4 of 6) MIR|SINE|MIR 13244 NR_130113 113402 Hs.487143 NM_145169 ENSG00000198818 SFT2D1 C6orf83|pRGR1 SFT2 domain containing 1 protein-coding 284-18 chr2 136428815 136428991 + 2 NA Intergenic L1MC1|LINE|L1 -310748 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 331-26 chr19 15822809 15822975 + 2 NA Intergenic AluJr|SINE|Alu -6055 NR_015379 652995 Hs.644234 NR_015379 ENSG00000214049 UCA1 CUDR|LINC00178|NCRNA00178|UCAT1|onco-lncRNA-36 urothelial cancer associated 1 ncRNA 411-21 chr2 163751674 163752072 + 2 NA Intergenic Intergenic -15865 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 229-13 chr15 63281415 63281554 + 2 NA intron (NM_031301, intron 2 of 5) L3|LINE|CR1 3879 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 623-3 chr15 97927991 97928549 + 2 NA Intergenic Intergenic -32433 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 332-9 chr14 87837400 87837791 + 2 NA Intergenic Intergenic 155587 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 358.5-30 chr8 124977577 124977911 + 2 NA exon (NM_152412, exon 3 of 3) exon (NM_152412, exon 3 of 3) 4449 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 320.5-27 chr5 156096746 156096993 + 2 NA Intergenic L1MD2|LINE|L1 -229888 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 307-35 chr9 31397446 31397636 + 2 NA Intergenic Intergenic -16051 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 622-10 chr22 28236928 28237424 + 2 NA intron (NM_001145418, intron 5 of 22) (TC)n|Simple_repeat|Simple_repeat -222693 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 382.5-6 chr14 47355034 47355424 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -11983 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 573-14 chr3 165016657 165017112 + 2 NA intron (NM_001041, intron 31 of 47) intron (NM_001041, intron 31 of 47) 61612 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 369-31 chr4 178705958 178706431 + 2 NA Intergenic Intergenic -798258 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 314-13 chr16 60324843 60325123 + 2 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 34810 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 448-29 chr6 127339409 127339895 + 2 NA intron (NM_001002030, intron 1 of 5) AluSx|SINE|Alu 2755 NM_001139510 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 607-13 chr18 3660745 3661220 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 57245 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 207-13 chr2 47602674 47602838 + 2 NA Intergenic L1MB8|LINE|L1 -32425 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 149 chr12 32340844 32340919 + 2 NA TTS (NM_001363603) TTS (NM_001363603) -58677 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 389-18 chr19 30163304 30163605 + 2 NA Intergenic Intergenic -208930 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 296-10 chr12 127908474 127908685 + 2 NA intron (NR_126452, intron 3 of 3) L1ME1|LINE|L1 -6831 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 411-41 chr8 87924295 87924703 + 2 NA Intergenic Intergenic -50484 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 196-21 chr7 105495690 105495805 + 2 NA intron (NM_001318164, intron 5 of 15) AluJb|SINE|Alu 12773 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 526-20 chr8 112060237 112060544 + 2 NA Intergenic Intergenic -583103 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 385-38 chr7 106671156 106671387 + 2 NA Intergenic Intergenic -10113 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 598-11 chr7 83670890 83671299 + 2 NA Intergenic Intergenic -21955 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 355-21 chr2 192422452 192422656 + 2 NA Intergenic Intergenic -227621 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 234.5-16 chr2 72780546 72780738 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 45391 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 274.5-19 chr6 87868694 87868831 + 2 NA intron (NR_110869, intron 2 of 4) MamGypLTR1d|LTR|Gypsy 83902 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 319.5-28 chr7 67451280 67451504 + 2 NA Intergenic Intergenic 115416 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 171.5-10 chr19 39596163 39596321 + 2 NA Intergenic Intergenic -6282 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 267.5-24 chr7 66270566 66270757 + 2 NA intron (NM_003596, intron 2 of 5) L1MC5|LINE|L1 65327 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 265-31 chr6 49575078 49575388 + 2 NA Intergenic Intergenic 24565 NR_146855 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 444-32 chr8 120691369 120691794 + 2 NA intron (NM_021021, intron 2 of 6) MER102b|DNA|hAT-Charlie -69672 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 449-34 chrX 13810460 13810724 + 2 NA intron (NM_001001995, intron 1 of 7) intron (NM_001001995, intron 1 of 7) 6501 NM_001001995 2824 Hs.495710 NM_005278 ENSG00000046653 GPM6B M6B glycoprotein M6B protein-coding 603-3 chr13 100404498 100404887 + 2 NA intron (NR_148027, intron 20 of 23) MER61-int|LTR|ERV1 76323 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 441-22 chr2 203900400 203900731 + 2 NA Intergenic Intergenic 32794 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 303-18 chr20 23871803 23872049 + 2 NA Intergenic Intergenic 7822 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 700-3 chr13 92732066 92732525 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -10681 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 235-2 chr10 14886501 14886760 + 2 NA intron (NM_001193427, intron 2 of 5) intron (NM_001193427, intron 2 of 5) 7730 NM_024670 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 541.5 chr1 98343939 98344438 + 2 NA Intergenic Intergenic 133477 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 384.5-6 chr11 46794026 46794303 + 2 NA intron (NM_001008938, intron 13 of 43) L1MB7|LINE|L1 -31665 NR_003056 692108 Hs.693252 NR_003056 ENSG00000212135 SNORD67 HBII-166 small nucleolar RNA, C/D box 67 snoRNA 279-34 chr8 75197497 75197759 + 2 NA Intergenic L1MC4|LINE|L1 80853 NR_103850 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 281-18 chr17 35757201 35757360 + 2 NA intron (NR_111988, intron 8 of 8) MLT1L|LTR|ERVL-MaLR -3607 NM_145272 146853 Hs.127194 NM_145272 ENSG00000270806 C17orf50 - chromosome 17 open reading frame 50 protein-coding 409-13 chr2 62540914 62541308 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR -34916 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 303-16 chr2 9906034 9906296 + 2 NA intron (NM_001318977, intron 8 of 13) intron (NM_001318977, intron 8 of 13) -45528 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 330-16 chr15 64739919 64740266 + 2 NA non-coding (NR_138350, exon 8 of 8) non-coding (NR_138350, exon 8 of 8) 21125 NR_138364 348093 Hs.436518 NM_194272 ENSG00000166831 RBPMS2 - RNA binding protein, mRNA processing factor 2 protein-coding 214.5-40 chrX 45954406 45954563 + 2 NA Intergenic L1M4|LINE|L1 -102994 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 559-8 chr18 9396388 9396910 + 2 NA intron (NM_020648, intron 4 of 4) intron (NM_020648, intron 4 of 4) 61876 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 120.5-14 chr3 134404104 134404223 + 2 NA Intergenic L2a|LINE|L2 -28746 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 363-16 chr15 66530878 66531126 + 2 NA intron (NM_001287823, intron 11 of 17) intron (NM_001287823, intron 11 of 17) 25676 NM_017975 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 369-9 chr10 88544008 88544200 + 2 NA intron (NM_018363, intron 4 of 6) MIR|SINE|MIR 39214 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 360.5-6 chr14 72683862 72684185 + 2 NA intron (NM_001280544, intron 7 of 9) L2|LINE|L2 167203 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 283-27 chr20 59911775 59911943 + 2 NA intron (NM_014258, intron 13 of 44) intron (NM_014258, intron 13 of 44) 21778 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 318.5-17 chr20 16241750 16241927 + 2 NA Intergenic Intergenic -255956 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 750-4 chr10 101725244 101725981 + 2 NA Intergenic Intergenic -30317 NM_001323541 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 526.5-6 chr12 120672745 120673297 + 2 NA Intergenic AluSz|SINE|Alu -14128 NM_014730 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 330-7 chr10 32456717 32456982 + 2 NA intron (NR_109827, intron 4 of 8) intron (NR_109827, intron 4 of 8) 10709 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 391.5-31 chr4 112214585 112214911 + 2 NA Intergenic Intergenic -17039 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 326-20 chr2 904798 905055 + 2 NA intron (NR_110179, intron 1 of 3) intron (NR_110179, intron 1 of 3) 525 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 241.5-13 chr15 95555061 95555181 + 2 NA Intergenic Intergenic 122028 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 360-21 chr2 58892387 58892719 + 2 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -325155 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 242-20 chr4 53078674 53078870 + 2 NA intron (NM_152540, intron 5 of 8) MIR|SINE|MIR 216455 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 258-21 chr4 111671325 111671483 + 2 NA Intergenic Intergenic -474050 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 470-8 chr12 19401906 19402264 + 2 NA Intergenic L1PBb|LINE|L1 -37407 NM_153207 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 344-8 chr12 8837338 8837594 + 2 NA exon (NM_144670, exon 8 of 36) exon (NM_144670, exon 8 of 36) -7538 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 284-13 chr15 59853353 59853553 + 2 NA Intergenic L1M5|LINE|L1 -150858 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 313-12 chr12 130546677 130546979 + 2 NA intron (NM_001351226, intron 2 of 21) MER102a|DNA|hAT-Charlie 81628 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 317-26 chr6 139531191 139531486 + 2 NA Intergenic Intergenic -56742 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 360-36 chr4 36991900 36992200 + 2 NA Intergenic L1MEg|LINE|L1 -9729 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 326-40 chr9 3374006 3374188 + 2 NA intron (NM_134428, intron 3 of 17) (CA)n|Simple_repeat|Simple_repeat 21499 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 289-34 chr4 108205988 108206148 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 33948 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 443.5-5 chr12 10500380 10500672 + 2 NA Intergenic Intergenic -5367 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 862.5-5 chr4 56667866 56668387 + 2 NA intron (NM_032495, intron 1 of 3) AluSx1|SINE|Alu -11604 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 325.5-8 chr14 40100186 40100431 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -667808 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 437-13 chr12 58172669 58173024 + 2 NA Intergenic Intergenic 84954 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 397-2 chr1 199807040 199807424 + 2 NA Intergenic Intergenic -220478 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 593-20 chrX 65034572 65034937 + 2 NA promoter-TSS (NM_001178032) promoter-TSS (NM_001178032) -13 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 276.5-38 chr8 72181251 72181572 + 2 NA Intergenic L2a|LINE|L2 70223 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 717-6 chr2 107516313 107516806 + 2 NA Intergenic L1ME1|LINE|L1 -12860 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 386-30 chr8 68617756 68618053 + 2 NA intron (NR_146186, intron 7 of 12) L1PA3|LINE|L1 -286413 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 487.5-31 chr8 106332529 106333001 + 2 NA intron (NM_018002, intron 1 of 15) L1MB7|LINE|L1 62587 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 386.5-26 chr8 104442330 104442622 + 2 NA intron (NM_001385, intron 4 of 9) intron (NM_001385, intron 4 of 9) 24579 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 175-6 chr17 57706641 57706778 + 2 NA Intergenic Intergenic 38590 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 257-17 chr16 86886495 86886667 + 2 NA Intergenic Intergenic 164490 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 486-22 chr2 63797550 63797953 + 2 NA Intergenic L1M1|LINE|L1 -43213 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 433-6 chr12 15609778 15610133 + 2 NA Intergenic L1MEc|LINE|L1 63344 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 412-7 chr11 9365821 9366356 + 2 NA Intergenic Intergenic -18564 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 390-15 chr2 67072465 67072734 + 2 NA Intergenic MIR|SINE|MIR -13847 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 453.5-12 chr3 76062721 76063335 + 2 NA Intergenic Intergenic -277479 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 324-37 chr7 91093962 91094249 + 2 NA intron (NM_012395, intron 11 of 13) L1PA16|LINE|L1 -170328 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 335-40 chr3 55285135 55285440 + 2 NA Intergenic Intergenic 107115 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 536.5-17 chr7 5528705 5529212 + 2 NA intron (NM_001101, intron 3 of 5) intron (NM_001101, intron 3 of 5) 1643 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 299-26 chr4 113772862 113773145 + 2 NA Intergenic LTR12C|LTR|ERV1 -11076 NM_172115 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 548.5-17 chr5 130643896 130644272 + 2 NA Intergenic Intergenic 521172 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 275-4 chr1 180297674 180297850 + 2 NA intron (NM_032360, intron 7 of 7) AluSq2|SINE|Alu -23081 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 601-2 chr16 68173664 68174044 + 2 NA intron (NM_004555, intron 5 of 10) intron (NM_004555, intron 5 of 10) 59645 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 317-10 chr17 28840458 28840694 + 2 NA intron (NM_001288636, intron 1 of 5) intron (NM_001288636, intron 1 of 5) 2214 NM_001288639 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 322.5-31 chr9 133537972 133538179 + 2 NA intron (NM_001145320, intron 3 of 18) MIRb|SINE|MIR 3371 NM_014694 9719 Hs.522543 NM_014694 ENSG00000197859 ADAMTSL2 ADAMTSL-2|GPHYSD1 ADAMTS like 2 protein-coding 464-27 chr7 126155165 126155450 + 2 NA Intergenic Intergenic -891016 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 297-9 chr16 21563523 21563765 + 2 NA Intergenic Intergenic -33577 NM_001288659 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 342-23 chr20 57810602 57810794 + 2 NA Intergenic Intergenic -99162 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 503-8 chr15 69375096 69375539 + 2 NA intron (NM_001104554, intron 3 of 8) MLT1B|LTR|ERVL-MaLR -39032 NM_001367804 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 211-29 chr8 92155011 92155231 + 2 NA Intergenic Intergenic -51736 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 258-29 chrX 14669111 14669314 + 2 NA intron (NM_002063, intron 7 of 8) THE1B-int|LTR|ERVL-MaLR 139676 NM_001118886 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 247-22 chr5 168471648 168471874 + 2 NA 3' UTR (NM_015238, exon 23 of 23) 3' UTR (NM_015238, exon 23 of 23) -14710 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 270-8 chr14 73043368 73043719 + 2 NA Intergenic AluSc|SINE|Alu -14991 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 312-28 chr5 52266448 52266829 + 2 NA Intergenic Intergenic 258607 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 374.5-12 chr16 81895035 81895432 + 2 NA intron (NM_002661, intron 12 of 32) intron (NM_002661, intron 12 of 32) 115942 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 402-25 chr5 22344969 22345225 + 2 NA intron (NM_001364104, intron 2 of 13) L3|LINE|CR1 -131247 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 211.5-33 chr7 11748605 11748766 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 83513 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 479-22 chr6 153758681 153759076 + 2 NA Intergenic Intergenic -251618 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 457-28 chr6 146977103 146977556 + 2 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -173505 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 640.5-6 chr17 53616904 53617408 + 2 NA Intergenic Intergenic -205771 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 363-32 chr8 57515740 57516062 + 2 NA Intergenic Intergenic 172114 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 276-15 chr15 38222152 38222299 + 2 NA Intergenic Intergenic -30611 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 448-8 chr14 24687994 24688276 + 2 NA Intergenic Intergenic -53945 NM_001346011 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 393-35 chr8 119878601 119878868 + 2 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 5012 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 223.5-17 chr18 51510486 51510698 + 2 NA intron (NR_040074, intron 1 of 2) L1MEc|LINE|L1 118550 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 469-4 chr11 14822288 14822805 + 2 NA intron (NM_000922, intron 7 of 15) L1PA13|LINE|L1 69659 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 328.5-19 chr2 31389491 31389672 + 2 NA intron (NM_000379, intron 6 of 35) intron (NM_000379, intron 6 of 35) 25161 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 220-19 chr2 191235824 191235996 + 2 NA Intergenic AluJo|SINE|Alu -9494 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 268.5-32 chr7 17547044 17547208 + 2 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 11783 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 358-7 chr10 44116156 44116419 + 2 NA Intergenic Intergenic -176463 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 370-11 chr15 60960914 60961136 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 268277 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 197-8 chr11 47036418 47036649 + 2 NA intron (NR_103472, intron 2 of 7) L1MC4|LINE|L1 99772 NM_024113 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 508-14 chr20 39216561 39216902 + 2 NA intron (NR_027124, intron 1 of 3) intron (NR_027124, intron 1 of 3) 8017 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 316-6 chr10 74665087 74665281 + 2 NA intron (NM_001369124, intron 8 of 9) L1MC4|LINE|L1 -135860 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 254-33 chr5 146767728 146767875 + 2 NA intron (NM_001271899, intron 2 of 9) L1MC1|LINE|L1 110984 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 409.5-25 chr5 102862023 102862550 + 2 NA intron (NM_001364582, intron 1 of 24) L1ME3G|LINE|L1 -3537 NM_138821 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 452-13 chr2 49718607 49719009 + 2 NA Intergenic Intergenic 255395 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 542-21 chr6 119358137 119358652 + 2 NA Intergenic AluSq|SINE|Alu -8633 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 613.5-10 chr6 110320833 110321438 + 2 NA intron (NM_001123364, intron 2 of 4) AluSx1|SINE|Alu 8923 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 281-27 chr3 70738210 70738405 + 2 NA Intergenic Intergenic 326617 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 422-8 chr11 106851089 106851439 + 2 NA intron (NM_001256424, intron 4 of 8) L1MA5|LINE|L1 167212 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 234.5-21 chr3 151063039 151063169 + 2 NA intron (NR_024066, intron 2 of 5) L1ME4a|LINE|L1 -23694 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 493-14 chr19 44696654 44697057 + 2 NA Intergenic AluJo|SINE|Alu -2296 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B|DFNB113 carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 276.5-23 chr20 13897175 13897381 + 2 NA intron (NR_073206, intron 6 of 20) L1M4c|LINE|L1 93336 NR_073206 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 477.5-15 chr18 8584913 8585151 + 2 NA Intergenic Intergenic -24413 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 269-19 chr2 18032027 18032296 + 2 NA Intergenic L1MEc|LINE|L1 153494 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 376-33 chrX 95414151 95414457 + 2 NA Intergenic Intergenic -351078 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 361-10 chr11 76893364 76893630 + 2 NA intron (NM_001300953, intron 1 of 9) MIRc|SINE|MIR 32579 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 365-7 chr12 60945168 60945417 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 1247547 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 436-5 chr10 105678768 105679173 + 2 NA intron (NR_120625, intron 3 of 3) L1M1|LINE|L1 141363 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 334.5-28 chr7 25200216 25200597 + 2 NA Intergenic L2|LINE|L2 -20052 NM_001371351 377-13 chr18 10539992 10540487 + 2 NA intron (NM_003826, intron 7 of 11) intron (NM_003826, intron 7 of 11) 14212 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 227-5 chr10 69095997 69096153 + 2 NA intron (NM_001321054, intron 1 of 1) intron (NM_001321054, intron 1 of 1) 7972 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 588.5-9 chr2 173614608 173615085 + 2 NA Intergenic Intergenic 259974 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 476-20 chr2 235912139 235912583 + 2 NA intron (NM_014914, intron 11 of 16) intron (NM_014914, intron 11 of 16) 256025 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 288.5-5 chr1 190214987 190215341 + 2 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 260846 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 230-36 chr9 94846958 94847099 + 2 NA intron (NM_032823, intron 5 of 14) L2a|LINE|L2 37066 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 157-17 chr7 41859729 41859838 + 2 NA Intergenic MIR3|SINE|MIR -156693 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 655.5-4 chr13 90373684 90374257 + 2 NA Intergenic Intergenic -119318 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 382.5-5 chr12 79794583 79794850 + 2 NA intron (NM_001244990, intron 19 of 24) L1M5|LINE|L1 -103619 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 302-16 chr20 32370376 32370613 + 2 NA intron (NM_015338, intron 3 of 11) MER58A|DNA|hAT-Charlie 11429 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 344-18 chr17 78633374 78633667 + 2 NA Intergenic L1M5|LINE|L1 -1463 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 484-33 chr8 131968664 131968940 + 2 NA intron (NR_136616, intron 9 of 23) L2|LINE|L2 52029 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 130-5 chr2 69286072 69286157 + 2 NA Intergenic Intergenic 101113 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 186-11 chr2 101183888 101184047 + 2 NA Intergenic L1MB7|LINE|L1 32307 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 325-11 chr2 212452980 212453184 + 2 NA intron (NM_001042599, intron 1 of 26) MIRb|SINE|MIR -26722 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 653.5-2 chr11 31716077 31716576 + 2 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 84335 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 417.5-2 chr10 13703198 13703449 + 2 NA intron (NM_001318336, intron 12 of 23) intron (NM_001318336, intron 12 of 23) 4244 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 224-9 chr15 97330973 97331103 + 2 NA Intergenic Intergenic 190773 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 301 chr1 75523566 75523800 + 2 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 87431 NM_001320287 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 226-3 chr1 215199688 215199845 + 2 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 117029 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 348.5-24 chr7 7899402 7899690 + 2 NA Intergenic L1MEd|LINE|L1 69206 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 357-42 chr7 68418257 68418502 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 398126 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 268-17 chr5 27172063 27172342 + 2 NA Intergenic Charlie3|DNA|hAT-Charlie -133616 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 386.5-20 chr5 42199914 42200221 + 2 NA Intergenic Intergenic -24722 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 665.5-5 chr3 114431538 114432031 + 2 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -21809 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 218-12 chr15 66748334 66748576 + 2 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 46219 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 929-4 chr5 13840492 13841245 + 2 NA intron (NM_001369, intron 34 of 78) intron (NM_001369, intron 34 of 78) 103612 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 463.5-13 chr3 144964195 144964466 + 2 NA Intergenic Intergenic 991249 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 336.5-27 chr8 125782050 125782413 + 2 NA Intergenic L1ME1|LINE|L1 168966 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 334-2 chr1 114671754 114672068 + 2 NA Intergenic AluJb|SINE|Alu -1862 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 783-8 chr4 65376139 65376860 + 2 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 292989 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 633.5-9 chr6 54989385 54989844 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -116846 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 430.5-6 chr10 49135484 49135997 + 2 NA non-coding (NR_038973, exon 2 of 6) non-coding (NR_038973, exon 2 of 6) -1720 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 268.5-34 chr8 68640472 68640653 + 2 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -309071 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 317.5-25 chr4 81232285 81232553 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -17197 NM_001363401 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 788-6 chr18 38567004 38567535 + 2 NA Intergenic Intergenic 910134 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 257-12 chr14 66050699 66050866 + 2 NA Intergenic Intergenic -435589 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 342.5-12 chr16 81232799 81233039 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -5770 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 420 chr1 58601791 58602165 + 2 NA Intergenic L1PB2|LINE|L1 -24726 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 273-22 chr22 34428945 34429269 + 2 NA Intergenic MIRb|SINE|MIR -506219 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 277.5-18 chr2 145834740 145834920 + 2 NA Intergenic L1MA5A|LINE|L1 -752227 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 392-33 chr7 62857273 62857522 + 2 NA Intergenic ALR/Alpha|Satellite|centr 446659 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 234.5-25 chr5 7685790 7686044 + 2 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 165216 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 363.5-33 chr8 125999802 126000125 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -48766 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 472.5-17 chr6 44258434 44258840 + 2 NA promoter-TSS (NM_001286511) promoter-TSS (NM_001286511) -747 NM_001286511 347734 Hs.182885 NM_178148 ENSG00000157593 SLC35B2 PAPST1|SLL|UGTrel4 solute carrier family 35 member B2 protein-coding 452-12 chr16 76169694 76169984 + 2 NA Intergenic AluY|SINE|Alu -107562 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 401-33 chr8 127534660 127534912 + 2 NA Intergenic Intergenic -52647 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 344.5-28 chr6 48435821 48436037 + 2 NA Intergenic Intergenic -367240 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 424-11 chr20 56829627 56829993 + 2 NA Intergenic Intergenic 200504 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 443-9 chr11 20908804 20909148 + 2 NA intron (NM_201551, intron 5 of 18) L1MB4|LINE|L1 239390 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 304.5-10 chr11 10888418 10888590 + 2 NA Intergenic L1M4|LINE|L1 30287 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 245-34 chr6 41073722 41073863 + 2 NA intron (NM_021705, intron 1 of 8) CpG 818 NM_002505 4800 Hs.10441 NM_002505 ENSG00000001167 NFYA CBF-A|CBF-B|HAP2|NF-YA nuclear transcription factor Y subunit alpha protein-coding 286-25 chr4 66973861 66974142 + 2 NA Intergenic L2c|LINE|L2 447999 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 316.5 chr1 35430442 35430673 + 2 NA Intergenic Intergenic -64480 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 242-15 chr18 37923388 37923591 + 2 NA Intergenic L1M5|LINE|L1 266354 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 402-11 chr11 123753554 123753869 + 2 NA exon (NM_001005188, exon 1 of 1) exon (NM_001005188, exon 1 of 1) 807 NM_001005188 390260 Hs.553759 NM_001005188 ENSG00000221931 OR6X1 OR11-270 olfactory receptor family 6 subfamily X member 1 protein-coding 146-3 chr10 87996904 87996994 + 2 NA Intergenic Intergenic 133324 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 457-24 chr6 35621912 35622327 + 2 NA intron (NM_001145775, intron 4 of 11) intron (NM_001145775, intron 4 of 11) 42670 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 169.5-22 chr8 130143667 130143801 + 2 NA intron (NM_001362925, intron 14 of 29) intron (NM_001362925, intron 14 of 29) -58966 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 269.5-22 chr2 75952216 75952465 + 2 NA Intergenic Intergenic -241425 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 292-27 chr4 125012939 125013135 + 2 NA Intergenic Intergenic -300305 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 414-49 chr9 100459868 100460155 + 2 NA intron (NM_001198812, intron 1 of 9) MIRb|SINE|MIR -13138 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 435.5-9 chr22 17106790 17107194 + 2 NA intron (NM_014339, intron 11 of 12) intron (NM_014339, intron 11 of 12) 14368 NM_031890 27439 Hs.209577 NM_031890 ENSG00000183307 TMEM121B CECR6 transmembrane protein 121B protein-coding 195-8 chr15 27028871 27029033 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 57771 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 389.5-21 chr3 179164896 179165121 + 2 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 16651 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 743.5-2 chr4 157914775 157915397 + 2 NA Intergenic L2|LINE|L2 -255666 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 336-46 chr8 56222826 56223203 + 2 NA Intergenic Intergenic 11225 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 268.5-4 chr11 85784556 85784825 + 2 NA intron (NM_001365826, intron 1 of 18) intron (NM_001365826, intron 1 of 18) 26451 NM_001365826 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 221.5-30 chr8 127686178 127686338 + 2 NA Intergenic Intergenic 47709 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 467.5-14 chr3 83626910 83627178 + 2 NA Intergenic L1M5|LINE|L1 1242531 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 268.5-14 chr2 118233907 118234059 + 2 NA Intergenic Intergenic -47597 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 211 chr1 54930461 54930633 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -43352 NM_014762 1718 Hs.498727 NM_014762 ENSG00000116133 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 398-31 chr7 439261 439469 + 2 NA Intergenic MLT2C1|LTR|ERVL 59940 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 557-2 chr10 71170791 71171211 + 2 NA Intergenic Intergenic -41569 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 363-17 chr17 57243696 57243994 + 2 NA Intergenic Intergenic -12006 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 372-41 chrX 51453515 51453736 + 2 NA Intergenic L1M4b|LINE|L1 42967 NM_018159 55190 Hs.200016 NM_018159 ENSG00000196368 NUDT11 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta nudix hydrolase 11 protein-coding 228-5 chr15 86798250 86798461 + 2 NA intron (NM_152336, intron 23 of 24) LTR67B|LTR|ERVL -134525 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 477-14 chr3 4751104 4751559 + 2 NA non-coding (NR_004428, exon 1 of 2) non-coding (NR_004428, exon 1 of 2) 259 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 469.5-17 chr7 49013725 49013998 + 2 NA Intergenic L1PA14|LINE|L1 89314 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 366.5-26 chr5 145634524 145634833 + 2 NA Intergenic L2c|LINE|L2 200664 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 242-17 chr2 17182688 17182837 + 2 NA Intergenic Intergenic 335678 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 268.5-17 chr22 43170522 43170748 + 2 NA intron (NM_015140, intron 11 of 13) AluJb|SINE|Alu 16499 NM_015140 23170 Hs.517670 NM_015140 ENSG00000100304 TTLL12 dJ526I14.2 tubulin tyrosine ligase like 12 protein-coding 551-3 chr1 228325973 228326283 + 2 NA intron (NM_052843, intron 56 of 80) L1MD2|LINE|L1 70981 NR_106800 102465444 NR_106800 ENSG00000284311 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 708-3 chr18 56838703 56839281 + 2 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 187607 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 343-7 chr11 67020926 67021300 + 2 NA Intergenic L1ME3A|LINE|L1 -1680 NM_001177880 91683 Hs.287636 NM_177963 ENSG00000173227 SYT12 SYT11|sytXII synaptotagmin 12 protein-coding 608-2 chr1 87715265 87715851 + 2 NA Intergenic Intergenic -343903 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 403-19 chr18 63359610 63359882 + 2 NA exon (NM_002035, exon 3 of 10) exon (NM_002035, exon 3 of 10) 7460 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 336.5-24 chr6 169075833 169076229 + 2 NA Intergenic Intergenic 8245 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 254-30 chr4 172441152 172441382 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 247650 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 279-30 chr5 154185052 154185266 + 2 NA Intergenic L2a|LINE|L2 -5574 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 467-27 chr8 84400026 84400305 + 2 NA intron (NM_001354319, intron 2 of 8) Tigger4b|DNA|TcMar-Tigger -15319 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 321-15 chr2 208384733 208384969 + 2 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) -21979 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 293.5-36 chr8 137682480 137682839 + 2 NA Intergenic L2a|LINE|L2 -269071 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 205-24 chr5 124775026 124775199 + 2 NA Intergenic L1MB5|LINE|L1 -30000 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 393.5-23 chr9 88701226 88701532 + 2 NA Intergenic AluSz|SINE|Alu 44526 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 415-2 chr1 218004611 218004951 + 2 NA Intergenic AluJb|SINE|Alu -38724 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 395-25 chr5 41001529 41002030 + 2 NA intron (NM_173489, intron 37 of 41) intron (NM_173489, intron 37 of 41) 69563 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 397-31 chr8 48850658 48850968 + 2 NA Intergenic Intergenic 70616 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 459.5-12 chr2 190276903 190277227 + 2 NA intron (NM_198047, intron 6 of 12) intron (NM_198047, intron 6 of 12) 42761 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 402-3 chr1 110424907 110425120 + 2 NA Intergenic Intergenic -17089 NM_006402 10542 Hs.439815 NM_006402 ENSG00000134248 LAMTOR5 HBXIP|XIP late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding 303-26 chr5 161128228 161128491 + 2 NA Intergenic L1MA9|LINE|L1 -189733 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 378-23 chr5 152727082 152727510 + 2 NA intron (NR_109877, intron 3 of 4) MER57A-int|LTR|ERV1 245053 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 253-12 chr18 2976806 2977071 + 2 NA intron (NM_014646, intron 1 of 19) AluJb|SINE|Alu -30315 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 242-14 chr18 34136102 34136257 + 2 NA intron (NM_001353232, intron 1 of 9) L1MB8|LINE|L1 86291 NM_001353235 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 490-26 chr5 21234449 21234762 + 2 NA Intergenic Intergenic -224875 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 325-25 chr5 148033118 148033378 + 2 NA Intergenic Intergenic -30724 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 446.5-7 chr2 2367585 2367875 + 2 NA Intergenic Intergenic -36455 NM_001329851 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 325-14 chr21 37487318 37487553 + 2 NA intron (NM_001347721, intron 6 of 11) MER104|DNA|TcMar-Tc2 67136 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 386-12 chr16 85590897 85591134 + 2 NA Intergenic Intergenic -20394 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 418-25 chr7 35352929 35353143 + 2 NA intron (NR_038864, intron 2 of 2) intron (NR_038864, intron 2 of 2) 39181 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 352-18 chr2 51165457 51165715 + 2 NA intron (NR_135237, intron 2 of 10) L1PBa|LINE|L1 132985 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 355.5-13 chr22 20246306 20246653 + 2 NA intron (NM_023004, intron 1 of 1) (GCAGGA)n|Simple_repeat|Simple_repeat 2732 NR_031618 100302118 NR_031618 ENSG00000221039 MIR1286 MIRN1286|hsa-mir-1286|mir-1286 microRNA 1286 ncRNA 403-28 chr21 25899299 25899685 + 2 NA intron (NM_001204301, intron 14 of 16) MLT1F|LTR|ERVL-MaLR -163838 NM_001685 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 480-9 chr14 51647527 51647857 + 2 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 4052 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 426-24 chr22 19540655 19541106 + 2 NA Intergenic L1MDa|LINE|L1 -15543 NM_003277 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 185-5 chr2 41520366 41520492 + 2 NA Intergenic L2c|LINE|L2 -357126 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 296.5-37 chr9 4238687 4238956 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 61247 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 365-21 chr5 8475823 8476179 + 2 NA Intergenic Intergenic 15076 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 336.5-16 chr3 101222596 101222988 + 2 NA 3' UTR (NM_016247, exon 19 of 19) 3' UTR (NM_016247, exon 19 of 19) 97783 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 376-31 chr8 100068431 100068728 + 2 NA intron (NM_001286693, intron 4 of 25) intron (NM_001286693, intron 4 of 25) 37047 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 467-9 chr14 47363922 47364207 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -20818 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 266-38 chr6 45993971 45994147 + 2 NA intron (NM_001370649, intron 1 of 5) L3|LINE|CR1 21801 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 238-2 chr1 37711160 37711316 + 2 NA Intergenic Intergenic 18722 NM_018101 55143 Hs.524571 NM_018101 ENSG00000134690 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 412-17 chr2 68417352 68417607 + 2 NA Intergenic Intergenic 49815 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 278-17 chr21 29807137 29807311 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 59049 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 421.5-14 chr19 30635241 30635585 + 2 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 263029 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 418-7 chr12 13633482 13633750 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -256871 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 401-18 chr18 7624799 7625066 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 57616 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 428-12 chr16 75042573 75042841 + 2 NA intron (NM_032268, intron 1 of 4) L1ME1|LINE|L1 43683 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 472-23 chr8 85849254 85849661 + 2 NA Intergenic MER65-int|LTR|ERV1 -21515 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 294-38 chr8 41412190 41412420 + 2 NA Intergenic L1MD|LINE|L1 -14350 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 261.5-21 chr20 46876576 46876780 + 2 NA Intergenic Intergenic -17946 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 480-33 chr8 119264968 119265245 + 2 NA Intergenic Intergenic -18249 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 198-18 chr7 32046510 32046692 + 2 NA intron (NM_001322059, intron 3 of 17) L2c|LINE|L2 23806 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 465.5-5 chr12 119058452 119058779 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 77074 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 301-20 chr17 40264818 40265071 + 2 NA exon (NM_133264, exon 5 of 8) exon (NM_133264, exon 5 of 8) -22935 NM_001254 990 Hs.405958 NM_001254 ENSG00000094804 CDC6 CDC18L|HsCDC18|HsCDC6|MGORS5 cell division cycle 6 protein-coding 411-10 chr10 124118018 124118451 + 2 NA Intergenic Intergenic -24636 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 209-14 chr2 112988457 112988605 + 2 NA Intergenic L1MA8|LINE|L1 10525 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 486.5-18 chr8 111786737 111787016 + 2 NA Intergenic Intergenic 410237 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 183-8 chr12 19724487 19724633 + 2 NA Intergenic U1|snRNA|snRNA 283961 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 155-5 chr2 62668460 62668566 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -5365 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 324-17 chr18 5031551 5031798 + 2 NA Intergenic L1MC4|LINE|L1 -49508 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 198-20 chr7 69497720 69497898 + 2 NA Intergenic LOR1b|LTR|ERV1 99815 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 551-20 chr20 5899599 5900120 + 2 NA Intergenic L1MB7|LINE|L1 -11651 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 271.5-40 chr8 123689349 123689578 + 2 NA intron (NM_001003954, intron 9 of 11) intron (NM_001003954, intron 9 of 11) -35662 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 709-9 chr3 4880897 4881428 + 2 NA Intergenic Intergenic 25339 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 310.5-30 chr3 50131312 50131544 + 2 NA intron (NR_135301, intron 2 of 3) (CA)n|Simple_repeat|Simple_repeat -23630 NM_001318798 6405 Hs.32981 NM_004186 ENSG00000001617 SEMA3F SEMA-IV|SEMA4|SEMAK semaphorin 3F protein-coding 330.5-20 chr2 102522414 102522614 + 2 NA intron (NM_001011552, intron 9 of 11) intron (NM_001011552, intron 9 of 11) 49288 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 229.5-15 chr19 28507469 28507686 + 2 NA intron (NR_110759, intron 5 of 9) LTR37B|LTR|ERV1 -99111 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 262.5-17 chr4 128478644 128478875 + 2 NA intron (NR_125882, intron 4 of 8) L2a|LINE|L2 50743 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 601.5-9 chr2 114900986 114901345 + 2 NA intron (NM_001321910, intron 2 of 26) HSMAR2|DNA|TcMar-Mariner -67617 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 206-5 chr10 68662317 68662439 + 2 NA intron (NM_030625, intron 6 of 11) intron (NM_030625, intron 6 of 11) -58861 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 1032.5-2 chr6 49164828 49165609 + 2 NA Intergenic Intergenic 298035 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 329-24 chr4 24460471 24460767 + 2 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 12286 NR_148981 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 545 chr1 103147886 103148270 + 2 NA Intergenic L2|LINE|L2 -39556 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 659.5-4 chr2 150344139 150344614 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -87369 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 444 chr1 91547151 91547407 + 2 NA Intergenic Intergenic 46171 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 581.5-3 chr11 104852818 104853348 + 2 NA Intergenic Intergenic 45587 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 481-12 chr3 54371722 54372170 + 2 NA intron (NM_018398, intron 3 of 37) MER46C|DNA|TcMar-Tigger 249394 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 257 chr1 112965967 112966153 + 2 NA Intergenic Intergenic 9645 NR_103744 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 304.5-40 chr7 67476245 67476397 + 2 NA Intergenic Intergenic 140345 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 192-21 chr5 130751437 130751549 + 2 NA Intergenic L1MA7|LINE|L1 413763 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 326 chr1 34173144 34173562 + 2 NA intron (NM_032884, intron 1 of 6) ORSL-2b|DNA|hAT-Tip100 -3554 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 386.5-15 chr22 26779961 26780272 + 2 NA non-coding (NR_110543, exon 6 of 6) non-coding (NR_110543, exon 6 of 6) -80095 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 254-24 chr3 20106056 20106216 + 2 NA intron (NM_003884, intron 5 of 17) intron (NM_003884, intron 5 of 17) -31429 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 310-43 chr8 122412760 122413043 + 2 NA Intergenic Intergenic 155743 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 355.5-12 chr20 21430684 21430861 + 2 NA Intergenic Intergenic -33246 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 312-36 chr9 114307145 114307377 + 2 NA intron (NM_032888, intron 58 of 60) intron (NM_032888, intron 58 of 60) -15762 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 514-17 chr5 13555867 13556190 + 2 NA Intergenic AluY|SINE|Alu 388452 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 533.5-12 chr6 161713552 161714002 + 2 NA intron (NM_004562, intron 7 of 11) THE1B|LTR|ERVL-MaLR 242800 NR_134593 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 326.5-11 chr13 49232084 49232364 + 2 NA Intergenic AluJr|SINE|Alu 11886 NM_001507 2862 Hs.248126 NM_001507 ENSG00000102539 MLNR GPR38|MTLR1 motilin receptor protein-coding 227-18 chr2 37164679 37164836 + 2 NA Intergenic L1MEc|LINE|L1 -7710 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 288.5-14 chr12 114143294 114143565 + 2 NA Intergenic Intergenic 98341 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 376-28 chr7 36199771 36200157 + 2 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 46710 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 210-2 chr11 42770085 42770230 + 2 NA Intergenic L1M3|LINE|L1 499212 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 220.5-6 chr11 112727820 112727948 + 2 NA Intergenic MIRb|SINE|MIR -172082 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 317-13 chr2 140282061 140282462 + 2 NA intron (NM_018557, intron 84 of 90) intron (NM_018557, intron 84 of 90) 304424 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 481-20 chr8 81496118 81496451 + 2 NA Intergenic Intergenic -13051 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 478.5-16 chr4 45158464 45159000 + 2 NA Intergenic L1MA10|LINE|L1 -432098 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 266-29 chr3 38638629 38638825 + 2 NA intron (NM_198056, intron 1 of 27) intron (NM_198056, intron 1 of 27) 10945 NM_000335 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 358.5-29 chr8 120321076 120321371 + 2 NA intron (NM_021110, intron 40 of 47) intron (NM_021110, intron 40 of 47) 123927 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 356.5-9 chr11 100204874 100205235 + 2 NA intron (NM_001243270, intron 14 of 23) intron (NM_001243270, intron 14 of 23) -482234 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 503-4 chr12 20493076 20493407 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -78623 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 249-12 chr17 58902391 58902576 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 146614 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 342.5-11 chr16 71610072 71610243 + 2 NA Intergenic LTR49|LTR|ERV1 -16027 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 164 chr1 10326852 10326965 + 2 NA intron (NM_001365951, intron 27 of 48) intron (NM_001365951, intron 27 of 48) 27942 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 545-22 chr7 48940641 48941031 + 2 NA Intergenic Intergenic 16289 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 529.5-21 chr8 74235917 74236216 + 2 NA 3' UTR (NM_001317830, exon 6 of 6) 3' UTR (NM_001317830, exon 6 of 6) 85295 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 324-10 chr13 27864822 27865218 + 2 NA intron (NR_047484, intron 1 of 4) intron (NR_047484, intron 1 of 4) 52271 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 361.5-17 chr20 51477402 51477583 + 2 NA intron (NM_012340, intron 3 of 10) (AT)n|Simple_repeat|Simple_repeat -24515 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 289.5-4 chr1 97917518 97917694 + 2 NA intron (NM_000110, intron 1 of 22) Tigger19a|DNA|TcMar-Tigger 3453 NM_000110 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 648-3 chr13 114236181 114236672 + 2 NA intron (NM_001330104, intron 1 of 16) intron (NM_001330104, intron 1 of 16) 1529 NM_001078645 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 580-6 chr17 70029284 70029894 + 2 NA Intergenic L1PREC2|LINE|L1 -21682 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 343-4 chr10 96011104 96011430 + 2 NA intron (NM_001159747, intron 4 of 11) intron (NM_001159747, intron 4 of 11) 11176 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 350.5-15 chr6 50861534 50861893 + 2 NA Intergenic Intergenic 42842 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 418.5-35 chrX 28759265 28759585 + 2 NA intron (NM_014271, intron 1 of 10) L1MC5a|LINE|L1 171979 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 243-36 chr9 98858976 98859193 + 2 NA Intergenic L1MA4|LINE|L1 51414 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 465.5 chr1 22623378 22623781 + 2 NA Intergenic Intergenic 9787 NR_106742 102466615 NR_106742 ENSG00000276835 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 550.5-10 chr2 193179829 193180268 + 2 NA Intergenic Intergenic 430203 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 558-2 chr12 51643419 51643751 + 2 NA intron (NM_001369788, intron 1 of 25) intron (NM_001369788, intron 1 of 25) 52349 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 160-11 chr22_KI270879v1_alt 280096 280195 + 2 NA TTS (NR_003082).2 TTS (NR_003082).2 -1659 NM_001293811 2952 Hs.268573 NM_000853 GSTT1 - glutathione S-transferase theta 1 protein-coding 226.5-18 chr3 106842583 106842725 + 2 NA Intergenic Intergenic 397984 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 240-28 chr20 38803802 38804022 + 2 NA Intergenic L1MB8|LINE|L1 -1785 NM_001172735 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 273.5 chr1 163870812 163871046 + 2 NA Intergenic L1MA8|LINE|L1 -447738 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 446.5-18 chr5 17670056 17670315 + 2 NA Intergenic Intergenic -14547 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 739.5-5 chr8 55451631 55452005 + 2 NA non-coding (NR_027765, exon 1 of 1) non-coding (NR_027765, exon 1 of 1) 3503 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 160-5 chr1 246565304 246565395 + 2 NA promoter-TSS (NM_001139459) promoter-TSS (NM_001139459) 912 NM_022366 64216 Hs.7395 NM_022366 ENSG00000162851 TFB2M Hkp1|mtTFB2 transcription factor B2, mitochondrial protein-coding 668.5-5 chr4 67935127 67935524 + 2 NA intron (NM_001114387, intron 3 of 9) L2b|LINE|L2 28168 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 368-34 chr5 28695587 28695824 + 2 NA Intergenic Intergenic -231165 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 664-3 chr12 87369082 87369596 + 2 NA Intergenic L1MC3|LINE|L1 38600 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 216-14 chr2 209331404 209331593 + 2 NA Intergenic Intergenic -92549 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 437-30 chr2 129839033 129839251 + 2 NA Intergenic L1MD|LINE|L1 38349 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 353-17 chr17 69074533 69074923 + 2 NA Intergenic L1PA16|LINE|L1 -13801 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 429-4 chr1 240225617 240226025 + 2 NA intron (NM_020066, intron 6 of 17) L1M4b|LINE|L1 133938 NM_001348094 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 245-24 chr20 20961134 20961410 + 2 NA Intergenic Intergenic 145086 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 293.5-13 chr16 74661446 74661626 + 2 NA intron (NM_001370534, intron 1 of 12) intron (NM_001370534, intron 1 of 12) 5341 NM_001370539 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 536-15 chr4 66676733 66677179 + 2 NA Intergenic L1M5|LINE|L1 400132 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 528-12 chr15 73558571 73559015 + 2 NA intron (NM_001042367, intron 5 of 5) L1ME1|LINE|L1 10750 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 155 chr10 97288589 97288701 + 2 NA intron (NM_032900, intron 1 of 11) intron (NM_032900, intron 1 of 11) 3992 NM_032900 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 587-8 chr2 179107704 179108047 + 2 NA 3' UTR (NM_178123, exon 18 of 18) 3' UTR (NM_178123, exon 18 of 18) -57738 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 388-26 chr3 169637980 169638438 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 25503 NM_001366473 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 584.5-9 chr4 178613139 178613548 + 2 NA Intergenic Intergenic -705407 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 433-18 chr3 106742991 106743207 + 2 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 497539 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 731-10 chr8 93573292 93573828 + 2 NA intron (NR_033858, intron 5 of 10) L1ME4a|LINE|L1 126873 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 399.5-30 chrX 106776119 106776551 + 2 NA intron (NM_024539, intron 2 of 6) intron (NM_024539, intron 2 of 6) -26338 NM_017752 54885 Hs.351798 NM_017752 ENSG00000133138 TBC1D8B GRAMD8B TBC1 domain family member 8B protein-coding 251-4 chr13 33595300 33595441 + 2 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 81424 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 500-11 chr4 122590130 122590505 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -28666 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 535.5-18 chr8 51885803 51886164 + 2 NA intron (NM_001363193, intron 1 of 5) intron (NM_001363193, intron 1 of 5) 13053 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 423.5-5 chr11 114418528 114418894 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie 18045 NM_001286048 10179 Hs.7527 NM_016090 ENSG00000076053 RBM7 - RNA binding motif protein 7 protein-coding 399-30 chr4 62921382 62921687 + 2 NA Intergenic Intergenic -759769 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 404.5-22 chr7 62545660 62545916 + 2 NA Intergenic ALR/Alpha|Satellite|centr 758268 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 370-9 chr13 29255014 29255308 + 2 NA intron (NM_001033602, intron 3 of 13) intron (NM_001033602, intron 3 of 13) -173499 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 238-23 chr20 45344298 45344521 + 2 NA intron (NM_002999, intron 1 of 4) intron (NM_002999, intron 1 of 4) 4015 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 173-6 chr2 58446873 58446992 + 2 NA Intergenic Intergenic -73821 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 131-7 chr21 41058635 41058737 + 2 NA Intergenic Intergenic 89378 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 654-5 chr13 29774275 29774836 + 2 NA intron (NM_007106, intron 2 of 4) intron (NM_007106, intron 2 of 4) 76062 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 302-22 chr4 88036361 88036549 + 2 NA intron (NR_156488, intron 3 of 13) intron (NR_156488, intron 3 of 13) 28820 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 512.5-3 chr13 80616373 80616764 + 2 NA Intergenic L1PA15|LINE|L1 -275442 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 286.5-17 chr2 19363740 19363993 + 2 NA Intergenic Intergenic -5243 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 343-22 chr3 62999547 62999877 + 2 NA Intergenic Intergenic -102976 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 577-2 chr11 19279298 19279696 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -37842 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 444-15 chr2 99432866 99433352 + 2 NA intron (NR_135649, intron 8 of 22) intron (NR_135649, intron 8 of 22) 56908 NR_135652 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 309.5-20 chr5 1874297 1874491 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 8531 NM_016358 50805 Hs.196927 NM_016358 ENSG00000113430 IRX4 IRXA3 iroquois homeobox 4 protein-coding 541-3 chr12 19804458 19804986 + 2 NA Intergenic Intergenic -209963 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 387-15 chr17 57253973 57254260 + 2 NA Intergenic L1ME1|LINE|L1 -1735 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 762-8 chr9 73808776 73809456 + 2 NA Intergenic Intergenic -562415 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 761-7 chr5 124041506 124041917 + 2 NA Intergenic Intergenic 396809 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 299-28 chr5 162183783 162183997 + 2 NA Intergenic L1ME2z|LINE|L1 116248 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 370-36 chr9 86046782 86046981 + 2 NA intron (NM_016548, intron 4 of 9) intron (NM_016548, intron 4 of 9) 52677 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 473.5-14 chr7 37010668 37010965 + 2 NA intron (NR_104120, intron 2 of 2) intron (NR_104120, intron 2 of 2) 13020 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 357.5-17 chr5 159471454 159471868 + 2 NA Intergenic AluY|SINE|Alu -5385 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 542-9 chr14 57220290 57220670 + 2 NA intron (NM_006544, intron 13 of 17) intron (NM_006544, intron 13 of 17) 48425 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 260-25 chr4 62120911 62121163 + 2 NA intron (NR_110595, intron 4 of 7) MLT1G3|LTR|ERVL-MaLR 40728 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 453-35 chrUn_KI270438v1 93104 93461 + 2 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 215-10 chr12 8080659 8080811 + 2 NA Intergenic L1ME3G|LINE|L1 -1476 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 170.5-3 chr10 55836406 55836590 + 2 NA Intergenic Intergenic -208556 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 440.5-23 chr8 90980546 90980980 + 2 NA intron (NM_001190972, intron 1 of 5) AluJo|SINE|Alu 4314 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 289-20 chr18 70969155 70969339 + 2 NA Intergenic MLT2B2|LTR|ERVL -318293 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 210-4 chr12 5969317 5969446 + 2 NA exon (NM_000552, exon 45 of 52) exon (NM_000552, exon 45 of 52) -23149 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 304.5-7 chr10 23317720 23318019 + 2 NA 3' UTR (NM_153714, exon 5 of 5) 3' UTR (NM_153714, exon 5 of 5) -26088 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 478.5-21 chr6 41755315 41755617 + 2 NA Intergenic AluSg|SINE|Alu -8065 NM_001166424 5225 Hs.1867 NM_002630 ENSG00000096088 PGC PEPC|PGII progastricsin protein-coding 797.5-2 chr2 52789453 52790025 + 2 NA Intergenic L1ME2z|LINE|L1 -87124 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 384-14 chr2 57916517 57916982 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 9098 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 330.5-8 chr10 30896013 30896364 + 2 NA intron (NM_001143766, intron 5 of 7) AluY|SINE|Alu 103329 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 238-26 chr3 65189978 65190207 + 2 NA Intergenic L2b|LINE|L2 -502092 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 446.5-3 chr12 2189867 2190193 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 33451 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 326-3 chr1 171388370 171388661 + 2 NA Intergenic L3|LINE|CR1 49619 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 245.5-10 chr14 57577492 57577703 + 2 NA intron (NM_001306087, intron 4 of 7) intron (NM_001306087, intron 4 of 7) -83740 NM_001283060 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 249.5-39 chr9 95503547 95503727 + 2 NA intron (NM_000264, intron 2 of 23) intron (NM_000264, intron 2 of 23) 3562 NM_001083607 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 482-23 chr9 131508852 131509153 + 2 NA non-coding (NR_148392, exon 6 of 21) non-coding (NR_148392, exon 6 of 21) 6084 NR_148397 10585 Hs.522449 NM_007171 ENSG00000130714 POMT1 LGMD2K|LGMDR11|MDDGA1|MDDGB1|MDDGC1|RT protein O-mannosyltransferase 1 protein-coding 331-27 chr2 23840599 23840867 + 2 NA intron (NR_125717, intron 13 of 28) L1MEd|LINE|L1 86390 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 220-30 chr7 77248887 77249027 + 2 NA intron (NM_020879, intron 4 of 18) intron (NM_020879, intron 4 of 18) -49138 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 369.5-3 chr1 195964470 195964757 + 2 NA Intergenic Intergenic 124102 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 694 chr1 160175386 160176002 + 2 NA intron (NM_144699, intron 15 of 21) MIRb|SINE|MIR -1717 NM_001001734 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 378.5-28 chr6 157330677 157331088 + 2 NA Intergenic Intergenic -6623 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 259.5-22 chr20 55505127 55505366 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -78049 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 209.5-30 chrX 83944759 83944928 + 2 NA Intergenic L1PB4|LINE|L1 83697 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 215-34 chr8 121247458 121247623 + 2 NA Intergenic Intergenic -391806 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 485-17 chr8 135075307 135075613 + 2 NA Intergenic Intergenic -158671 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 491-18 chr4 34073811 34074139 + 2 NA Intergenic AluJr|SINE|Alu -34082 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 253-16 chr21 30179487 30179672 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -12774 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 275-30 chr5 43802904 43803097 + 2 NA Intergenic MIR3|SINE|MIR -199770 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 305-4 chr1 211800749 211801016 + 2 NA intron (NM_014873, intron 2 of 7) HAL1|LINE|L1 -28755 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 358-14 chr11 129053990 129054242 + 2 NA intron (NM_001142685, intron 9 of 21) intron (NM_001142685, intron 9 of 21) -29928 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 587.5-17 chr4 61723751 61724138 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 437821 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 180-12 chr5 18705149 18705318 + 2 NA Intergenic AluSx1|SINE|Alu 897959 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 512.5-4 chr17 59018158 59018565 + 2 NA intron (NR_148346, intron 19 of 23) intron (NR_148346, intron 19 of 23) 88519 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 342-26 chr4 40128734 40129118 + 2 NA intron (NM_001318359, intron 13 of 18) intron (NM_001318359, intron 13 of 18) -62154 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 466.5-24 chr8 119621277 119621779 + 2 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 17311 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 559-22 chr9 25591985 25592610 + 2 NA Intergenic Intergenic 86561 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 232-9 chr11 61389281 61389487 + 2 NA Intergenic MER68|LTR|ERVL -2976 NM_001330285 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 427-22 chr4 73138824 73139192 + 2 NA intron (NM_198889, intron 14 of 32) intron (NM_198889, intron 14 of 32) -69249 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 428-20 chr3 65339519 65340052 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -554031 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 257-37 chr4 124340211 124340399 + 2 NA Intergenic Intergenic 218129 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 290-7 chr13 72152912 72153196 + 2 NA Intergenic Intergenic -285850 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 625-16 chr5 162595602 162596174 + 2 NA Intergenic Intergenic 528246 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 392-35 chr7 108519234 108519546 + 2 NA intron (NM_015723, intron 2 of 11) intron (NM_015723, intron 2 of 11) 6745 NM_001256009 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 236.5-19 chr2 45821201 45821391 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 169621 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 682-12 chr4 30533852 30534340 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -186273 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 392-39 chr8 140552847 140553142 + 2 NA intron (NM_001164623, intron 10 of 17) intron (NM_001164623, intron 10 of 17) 40998 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 351-2 chr1 183167577 183167818 + 2 NA Intergenic Intergenic -18567 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 296-29 chr5 128659220 128659519 + 2 NA Intergenic Intergenic -121124 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 325.5-19 chr20 37289431 37289716 + 2 NA promoter-TSS (NM_001003897) promoter-TSS (NM_001003897) -82 NM_022077 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 133.5-8 chr13 77214794 77214865 + 2 NA intron (NM_015057, intron 21 of 82) Tigger3a|DNA|TcMar-Tigger 112265 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 201-10 chr16 82603326 82603473 + 2 NA Intergenic Intergenic -23570 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 321.5-8 chr10 44081231 44081457 + 2 NA Intergenic L2a|LINE|L2 168942 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 545.5-3 chr12 120605003 120605322 + 2 NA Intergenic AluSx1|SINE|Alu -23760 NM_015918 51367 Hs.279913 NM_015918 ENSG00000167272 POP5 HSPC004|RPP2|RPP20|hPop5 POP5 homolog, ribonuclease P/MRP subunit protein-coding 429.5-10 chr2 43057475 43057837 + 2 NA Intergenic Intergenic -18113 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 478 chr1 227098701 227099222 + 2 NA intron (NM_001366019, intron 15 of 36) intron (NM_001366019, intron 15 of 36) 158667 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 304.5-4 chr1 202706970 202707464 + 2 NA intron (NM_177402, intron 1 of 8) L2a|LINE|L2 3237 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 367.5-28 chr5 162086883 162087287 + 2 NA intron (NM_198904, intron 1 of 9) intron (NM_198904, intron 1 of 9) 19443 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 343.5-3 chr10 63701656 63701885 + 2 NA Intergenic MIR3|SINE|MIR -179880 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 421-19 chr2 143163581 143163888 + 2 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 34315 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 223-9 chr14 58514101 58514286 + 2 NA intron (NM_001329945, intron 29 of 29) intron (NM_001329945, intron 29 of 29) 74512 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 124.5-15 chr9 88621134 88621252 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 86015 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 655-14 chr6 4054282 4054713 + 2 NA intron (NR_146785, intron 11 of 20) intron (NR_146785, intron 11 of 20) 24640 NM_173563 222826 Hs.657342 NM_173563 ENSG00000145975 FAM217A C6orf146 family with sequence similarity 217 member A protein-coding 255-25 chr5 26338485 26338720 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 699984 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 738-9 chr8 124935995 124936549 + 2 NA Intergenic L1MC5|LINE|L1 -5736 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 549-11 chr4 44580627 44580968 + 2 NA Intergenic Intergenic 70844 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 212.5-23 chr3 136050898 136051106 + 2 NA intron (NM_181897, intron 4 of 12) intron (NM_181897, intron 4 of 12) 28260 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 488 chr11 103210990 103211337 + 2 NA intron (NM_001377, intron 53 of 88) L2|LINE|L2 101737 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 388-10 chr12 16590039 16590360 + 2 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 15180 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 442-9 chr16 2073438 2073796 + 2 NA intron (NM_021055, intron 21 of 40) intron (NM_021055, intron 21 of 40) 16667 NR_030646 100188847 NR_030646 ENSG00000221656 MIR1225 MIRN1225 microRNA 1225 ncRNA 294.5-21 chr20 59880979 59881179 + 2 NA intron (NM_014258, intron 29 of 44) intron (NM_014258, intron 29 of 44) 52558 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 156-13 chr22 49366466 49366604 + 2 NA Intergenic Intergenic 176931 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 406-21 chr6 146780052 146780439 + 2 NA intron (NM_024694, intron 29 of 35) L1M4|LINE|L1 23579 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 539-13 chr4 114471451 114471788 + 2 NA Intergenic L1MEc|LINE|L1 -126783 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 495-9 chr2 68250701 68251127 + 2 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1618 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 277-29 chr20 33180736 33180945 + 2 NA intron (NM_001319164, intron 8 of 8) intron (NM_001319164, intron 8 of 8) 12681 NM_080574 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 341.5-9 chr12 4172765 4172954 + 2 NA Intergenic Intergenic -100903 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 409.5-10 chr17 50048506 50048877 + 2 NA Intergenic LTR32|LTR|ERVL 7048 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 PICART1 - p53 inducible cancer associated RNA transcript 1 ncRNA 263-16 chr3 143978576 143978711 + 2 NA intron (NM_001134470, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 5562 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 216.5-6 chr10 24363341 24363472 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -86008 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 227-23 chr20 47879971 47880163 + 2 NA Intergenic LTR16D|LTR|ERVL -93451 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 446.5-24 chr8 75022057 75022406 + 2 NA intron (NM_031461, intron 12 of 14) intron (NM_031461, intron 12 of 14) 22076 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 391-30 chr8 138529526 138529864 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -31965 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 568.5-5 chr2 182762240 182762587 + 2 NA intron (NR_073367, intron 20 of 22) intron (NR_073367, intron 20 of 22) 46156 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 608-4 chr11 27884965 27885438 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -163171 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 233-12 chr2 9987526 9987676 + 2 NA intron (NM_198182, intron 9 of 15) intron (NM_198182, intron 9 of 15) 35908 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 396.5-20 chr21 19684879 19685193 + 2 NA Intergenic L1MCb|LINE|L1 214719 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 633.5-7 chr2 182379637 182380011 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 47224 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 272-15 chr2 68873049 68873220 + 2 NA Intergenic Intergenic -1737 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 773.5 chr11 15242657 15243280 + 2 NA intron (NM_001278315, intron 12 of 12) intron (NM_001278315, intron 12 of 12) 93866 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 489.5-5 chr11 47859611 47860007 + 2 NA Intergenic Intergenic -11265 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 165.5-20 chr6 44469087 44469231 + 2 NA Intergenic MIR|SINE|MIR 33518 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 355.5-16 chr5 43336826 43337015 + 2 NA Intergenic Intergenic -23508 NM_001324224 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 240-42 chr7 17037806 17037956 + 2 NA Intergenic Intergenic -155898 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 282-8 chr10 63922194 63922417 + 2 NA Intergenic Charlie30a|DNA|hAT-Charlie -400415 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 531.5-5 chr18 4440705 4441410 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 14209 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 496.5-18 chr9 30341322 30341600 + 2 NA Intergenic Intergenic 66993 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 332-41 chr7 78715240 78715497 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -293620 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 534-11 chr16 23741227 23741653 + 2 NA Intergenic AluSx|SINE|Alu -13586 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 308-2 chr1 247740033 247740357 + 2 NA TTS (NM_001004732) TTS (NM_001004732) 1580 NM_001004732 343170 NM_001004732 ENSG00000153230 OR14K1 OR1-39|OR1.5.9|OR5AY1 olfactory receptor family 14 subfamily K member 1 protein-coding 328-20 chr2 57535921 57536136 + 2 NA Intergenic L1MC2|LINE|L1 -371623 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 394-17 chr3 32829830 32830302 + 2 NA intron (NM_001039111, intron 1 of 3) AluSx|SINE|Alu 12069 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 718-2 chr2 47686057 47686476 + 2 NA Intergenic Intergenic -96816 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 170-8 chr14 60786520 60786610 + 2 NA intron (NM_001177963, intron 1 of 6) Charlie1a|DNA|hAT-Charlie 51804 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 340-26 chr20 37570944 37571271 + 2 NA Intergenic Intergenic -43176 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 188-10 chr2 64647383 64647558 + 2 NA intron (NM_014755, intron 1 of 1) intron (NM_014755, intron 1 of 1) 6443 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 185-10 chr8 81745932 81746063 + 2 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 13549 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 567-8 chr19 27998486 27998916 + 2 NA intron (NR_146733, intron 3 of 6) L1M2|LINE|L1 -204761 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 621-7 chr2 10351914 10352225 + 2 NA intron (NM_001258357, intron 1 of 4) AluSz6|SINE|Alu -16609 NM_001258358 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 254-13 chr2 34930310 34930557 + 2 NA Intergenic Intergenic 252876 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 311.5-32 chr3 84289131 84289303 + 2 NA Intergenic LTR73|LTR|ERV1 580358 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 563.5 chr11 20316352 20316881 + 2 NA Intergenic AluSz6|SINE|Alu -47069 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 263.5-7 chr14 56543567 56543732 + 2 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 29318 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 401-10 chr11 103041530 103041777 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 50507 NM_001318739 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 299-14 chr17 66713166 66713412 + 2 NA intron (NM_002737, intron 8 of 16) AluSx4|SINE|Alu -73783 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 349-17 chr16 51432416 51432729 + 2 NA Intergenic MIR|SINE|MIR -281300 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 274-15 chr2 168301642 168301805 + 2 NA Intergenic Intergenic -54128 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 420.5-17 chr3 131915357 131915837 + 2 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 70334 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 203-20 chr4 122263717 122263948 + 2 NA intron (NM_015312, intron 42 of 83) intron (NM_015312, intron 42 of 83) 93229 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 337.5-12 chr18 75813718 75814062 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -101487 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 346-5 chr1 209069792 209070067 + 2 NA Intergenic Intergenic 97475 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 310.5-28 chr2 217025378 217025557 + 2 NA Intergenic Intergenic 154695 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 265-24 chr20 14417087 14417421 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -79587 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 289.5-11 chr10 118312211 118312507 + 2 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 29965 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 157-16 chr6 23339359 23339508 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -621509 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 302.5-43 chr9 102843491 102843713 + 2 NA Intergenic L2c|LINE|L2 -151731 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 610.5-7 chr2 8665521 8666034 + 2 NA Intergenic L1MB3|LINE|L1 16084 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 235.5 chr1 38548971 38549174 + 2 NA Intergenic Intergenic 73876 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 153-12 chr7 35701336 35701482 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 6203 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 452-5 chr11 38951278 38951633 + 2 NA Intergenic Intergenic 302597 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 262-8 chr10 79093977 79094220 + 2 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 25132 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 344-3 chr1 227178172 227178390 + 2 NA intron (NM_001366019, intron 5 of 36) THE1B|LTR|ERVL-MaLR 140211 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 472.5-3 chr10 108258275 108258729 + 2 NA Intergenic Intergenic -189209 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 216.5-22 chr2 120798657 120798817 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 6456 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 455 chr1 45138447 45138780 + 2 NA intron (NM_020883, intron 1 of 13) MER8|DNA|TcMar-Tigger 67992 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 280-15 chr14 66870187 66870392 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -319151 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 530-25 chr6 16959236 16959593 + 2 NA Intergenic Intergenic -142844 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 223.5-9 chr12 54174365 54174515 + 2 NA Intergenic Intergenic 14517 NM_001351249 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 591-4 chr11 38694580 38695088 + 2 NA Intergenic L2a|LINE|L2 45976 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 275.5-6 chr10 33066785 33066974 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 49928 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 193-20 chr5 129526044 129526177 + 2 NA intron (NM_133638, intron 3 of 22) intron (NM_133638, intron 3 of 22) -65421 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 297-4 chr1 227360171 227360435 + 2 NA Intergenic AluSg4|SINE|Alu -41811 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 293.5-27 chr6 83025555 83025715 + 2 NA intron (NR_146809, intron 5 of 9) AluSx|SINE|Alu 40206 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 417-45 chr9 31672800 31673112 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -291466 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 415.5-16 chr6 75526178 75526517 + 2 NA Intergenic Intergenic -32547 NM_001289987 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 473.5-18 chr9 80204622 80204998 + 2 NA Intergenic L1MEg|LINE|L1 229787 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 593-5 chr14 69570804 69571379 + 2 NA 3' UTR (NM_001271507, exon 2 of 2) 3' UTR (NM_001271507, exon 2 of 2) 3780 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 721-2 chr12 22080683 22081206 + 2 NA Intergenic MIR|SINE|MIR 34726 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 452-24 chr4 70389886 70390157 + 2 NA 3' UTR (NM_006685, exon 3 of 3) 3' UTR (NM_006685, exon 3 of 3) 6890 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 279-28 chr4 170841762 170841985 + 2 NA Intergenic Intergenic -98138 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 493-7 chr14 72243582 72243882 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -273088 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 344.5-26 chr5 90555253 90555717 + 2 NA Intergenic Intergenic -3312 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 271-4 chr11 103237490 103237723 + 2 NA intron (NM_001377, intron 63 of 88) intron (NM_001377, intron 63 of 88) 128180 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 384-15 chr2 96981136 96981368 + 2 NA intron (NM_001122646, intron 1 of 16) AluSx1|SINE|Alu 5328 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 389-25 chr20 46445466 46445850 + 2 NA TTS (NR_146919) TTS (NR_146919) 11985 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 266-32 chr4 60022715 60022878 + 2 NA Intergenic Intergenic -899823 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 331-36 chr5 107517950 107518184 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 152870 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 424-23 chr8 128408707 128409022 + 2 NA intron (NR_121672, intron 6 of 7) (TTCCTCA)n|Simple_repeat|Simple_repeat 155815 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 327-42 chr7 29794081 29794435 + 2 NA Intergenic L1ME4a|LINE|L1 -12296 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 341-4 chr10 113483364 113483627 + 2 NA Intergenic MER99|DNA|hAT? -67336 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 314-40 chr8 127463250 127463583 + 2 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 18723 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 542-16 chr20 58747598 58748128 + 2 NA Intergenic Intergenic -25562 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 362.5-7 chr11 102462713 102463076 + 2 NA TTS (NR_135053) TTS (NR_135053) -4361 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 379.5-6 chr11 83905136 83905516 + 2 NA intron (NM_001142700, intron 7 of 19) L2c|LINE|L2 -222901 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 555-6 chr12 55678752 55679311 + 2 NA Intergenic L1MC4|LINE|L1 -2705 NM_152637 196410 Hs.51483 NM_152637 ENSG00000170439 METTL7B ALDI methyltransferase like 7B protein-coding 399-26 chr3 134573901 134574121 + 2 NA intron (NM_001353123, intron 11 of 11) Charlie17b|DNA|hAT-Charlie 77007 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 465.5-10 chr2 46672508 46672921 + 2 NA Intergenic Intergenic -26246 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 431-23 chr4 27744638 27744986 + 2 NA Intergenic L1ME1|LINE|L1 527333 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 267-43 chr5 84587472 84587837 + 2 NA Intergenic Intergenic -202774 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 353-14 chr15 65298622 65298857 + 2 NA Intergenic Intergenic 2688 NR_002756 26831 NR_002756 ENSG00000199568 RNU5A-1 RNU5|RNU5A|RNU5C|U5A|U5B1 RNA, U5A small nuclear 1 snRNA 189-16 chr2 68582096 68582256 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -61412 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 345.5-33 chr8 52936077 52936323 + 2 NA Intergenic AluSz|SINE|Alu -3708 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 242-5 chr12 1059074 1059258 + 2 NA intron (NR_027949, intron 2 of 15) L1P4|LINE|L1 31418 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 264.5-36 chr8 47014224 47014530 + 2 NA Intergenic AluSz6|SINE|Alu 173491 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 487.5-23 chr4 68135006 68135424 + 2 NA Intergenic L1MA4A|LINE|L1 -5346 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 279-29 chr5 43657099 43657280 + 2 NA intron (NM_012343, intron 16 of 21) L2c|LINE|L2 -53959 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 393-18 chr2 114590306 114590603 + 2 NA intron (NM_001321908, intron 2 of 25) MER63C|DNA|hAT-Blackjack 128877 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 287-40 chr7 32218507 32218901 + 2 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 80624 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 367-12 chr12 2635919 2636193 + 2 NA intron (NM_001129836, intron 31 of 46) intron (NM_001129836, intron 31 of 46) 36164 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 338-35 chr7 54016420 54016752 + 2 NA Intergenic Intergenic -204655 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 374.5-24 chr8 124691060 124691415 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 37236 NM_001363297 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 361-24 chr21 23436949 23437415 + 2 NA Intergenic Intergenic -52347 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 254.5-48 chr8 141097809 141098010 + 2 NA Intergenic L1MA4A|LINE|L1 -30680 NM_001362798 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 284-12 chr15 46966861 46967051 + 2 NA Intergenic L1MA4|LINE|L1 -217133 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 557-5 chr12 16642827 16643219 + 2 NA Intergenic Intergenic -34809 NR_045012 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 274.5-22 chr7 81628803 81629118 + 2 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) -2744 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 249.5-37 chr8 96572371 96572584 + 2 NA intron (NM_002998, intron 1 of 4) intron (NM_002998, intron 1 of 4) -72765 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 303.5-6 chr14 60701774 60702014 + 2 NA Intergenic L1MA5A|LINE|L1 22457 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 832-4 chr2 71985147 71985670 + 2 NA Intergenic L1MEf|LINE|L1 162454 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 580-3 chr12 26119626 26120137 + 2 NA TTS (NM_030762) TTS (NM_030762) 5156 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 654-10 chr20 43378886 43379316 + 2 NA Intergenic Intergenic -78795 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 466-11 chr14 56285710 56286155 + 2 NA intron (NM_021255, intron 3 of 5) MER5C1|DNA|hAT-Charlie 167521 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 503.5-19 chrX 129773759 129774308 + 2 NA Intergenic MIRb|SINE|MIR -5916 NM_018990 54440 Hs.61469 NM_018990 ENSG00000122122 SASH3 753P9|CXorf9|HACS2|SH3D6C|SLY SAM and SH3 domain containing 3 protein-coding 393.5-5 chr11 5734654 5735027 + 2 NA Intergenic Intergenic -1608 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 193.5 chr1 151971747 151971877 + 2 NA Intergenic Intergenic 22047 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 175.5-26 chr5 89326229 89326328 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -422173 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 482.5-5 chr14 69321702 69322157 + 2 NA intron (NM_020692, intron 2 of 15) intron (NM_020692, intron 2 of 15) 61771 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 391.5-32 chr5 43769589 43769984 + 2 NA Intergenic Intergenic -166556 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 178-16 chr5 160148859 160148982 + 2 NA Intergenic Intergenic -29470 NM_001349733 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 471-15 chr15 86254489 86254788 + 2 NA intron (NM_152336, intron 7 of 24) intron (NM_152336, intron 7 of 24) 62330 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 271-13 chr2 12452799 12452949 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 253744 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 333-18 chr2 152408355 152408751 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 73379 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 230-9 chr14 56946377 56946601 + 2 NA Intergenic Intergenic 133331 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 201-7 chr12 124489578 124489712 + 2 NA intron (NM_001077261, intron 3 of 47) intron (NM_001077261, intron 3 of 47) 77967 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 246-7 chr17 59101166 59101324 + 2 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 5635 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 357-40 chr7 37317635 37317987 + 2 NA intron (NM_001206480, intron 2 of 21) L1MA2|LINE|L1 35857 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 306-30 chr7 67765189 67765440 + 2 NA Intergenic Intergenic -254939 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 320-5 chr11 47664048 47664276 + 2 NA intron (NM_024783, intron 17 of 18).2 intron (NM_024783, intron 17 of 18).2 -21508 NM_001317231 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 531-21 chr20 39044443 39044806 + 2 NA Intergenic L1ME5|LINE|L1 82280 NM_001190809 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 341-5 chr11 26459194 26459392 + 2 NA intron (NM_031418, intron 3 of 26) L2a|LINE|L2 -14609 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 458.5-16 chr5 118014666 118015170 + 2 NA intron (NR_104997, intron 2 of 2) L1MB8|LINE|L1 -267656 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 255-24 chr4 161426056 161426278 + 2 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -596566 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 428.5-24 chr9 34943137 34943441 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -14198 NR_136307 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 318-38 chr6 134963957 134964198 + 2 NA 3' UTR (NM_001363686, exon 19 of 19) 3' UTR (NM_001363686, exon 19 of 19) -13976 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 488-20 chr8 131364564 131364901 + 2 NA Intergenic Intergenic -323823 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 273.5-10 chr17 29634102 29634368 + 2 NA intron (NM_033389, intron 14 of 14) intron (NM_033389, intron 14 of 14) -12812 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 192-10 chr17 32290527 32290646 + 2 NA intron (NM_001363836, intron 4 of 8) Tigger15a|DNA|TcMar-Tigger 24410 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 458-4 chr10 31666803 31667137 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 241956 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 390.5-27 chr6 63296502 63296814 + 2 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 23319 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 343.5-20 chr2 225904906 225905181 + 2 NA Intergenic Intergenic -237751 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 247-13 chr22 20809086 20809253 + 2 NA intron (NM_001362863, intron 8 of 53) intron (NM_001362863, intron 8 of 53) 35056 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 461-17 chr3 121155279 121155682 + 2 NA intron (NR_145517, intron 8 of 8) intron (NR_145517, intron 8 of 8) 105840 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 223-18 chr2 58910785 58910968 + 2 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -306832 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 550.5-9 chr2 41969854 41970205 + 2 NA Intergenic Intergenic -16223 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 187 chr1 41519583 41519748 + 2 NA intron (NM_024503, intron 6 of 8) intron (NM_024503, intron 6 of 8) -34982 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 384-11 chr16 58630020 58630304 + 2 NA promoter-TSS (NM_001265612) promoter-TSS (NM_001265612) -336 NM_016284 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 360-42 chr5 128283412 128283679 + 2 NA intron (NM_001999, intron 55 of 64) L2|LINE|L2 199779 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 358-37 chr4 13602873 13603092 + 2 NA exon (NM_148894, exon 10 of 26) exon (NM_148894, exon 10 of 26) 24743 NM_148894 259282 Hs.744935 NM_148894 ENSG00000038219 BOD1L1 BOD1L|FAM44A biorientation of chromosomes in cell division 1 like 1 protein-coding 349.5-17 chr18 13161558 13161854 + 2 NA Intergenic Intergenic -57054 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 493.5-18 chr7 28141432 28141800 + 2 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -38841 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 351.5-5 chr13 64203708 64203883 + 2 NA Intergenic Intergenic -127784 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 311-18 chr2 188508353 188508590 + 2 NA intron (NM_001252669, intron 4 of 8) intron (NM_001252669, intron 4 of 8) 210979 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 257-38 chr5 89181488 89181705 + 2 NA intron (NR_136219, intron 6 of 9) intron (NR_136219, intron 6 of 9) -277491 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 460.5-27 chr5 181204888 181205224 + 2 NA promoter-TSS (NM_203296) promoter-TSS (NM_203296) 140 NM_203293 81786 Hs.487412 NM_033342 ENSG00000146054 TRIM7 GNIP|RNF90 tripartite motif containing 7 protein-coding 434-17 chr5 8358436 8358795 + 2 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 98949 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 434.5-4 chr12 99758835 99759320 + 2 NA intron (NM_152788, intron 8 of 25) intron (NM_152788, intron 8 of 25) 111324 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 302-21 chr3 146896643 146896912 + 2 NA Intergenic Intergenic -25146 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 287-11 chr14 87180816 87181042 + 2 NA Intergenic MER77B|LTR|ERVL 275151 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 199-20 chr7 130695228 130695337 + 2 NA Intergenic Intergenic -7850 NM_001304968 114960 Hs.592266 NM_052933 ENSG00000213265 TSGA13 - testis specific 13 protein-coding 161-5 chr11 43699607 43699764 + 2 NA intron (NM_016142, intron 1 of 10) LTR16C|LTR|ERVL 18947 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 237-15 chr20 46025395 46025637 + 2 NA intron (NM_001134771, intron 1 of 25) intron (NM_001134771, intron 1 of 25) -3443 NR_147699 109729184 Hs.675276 NR_147699 ENSG00000204044 SLC12A5-AS1 - SLC12A5 and MMP9 antisense RNA 1 ncRNA 522-26 chr3 189380999 189381308 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -140559 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 402.5-18 chr2 127113705 127113980 + 2 NA Intergenic Intergenic -6688 NM_139351 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 462-10 chr11 33512241 33512514 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 136269 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 248-14 chr2 181304358 181304502 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 1222 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 393-22 chr20 57778604 57779044 + 2 NA Intergenic Intergenic -67288 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 384.5-9 chr15 83546733 83546957 + 2 NA intron (NM_001324186, intron 2 of 9) L1M1|LINE|L1 56231 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 223-20 chr2 89841035 89841159 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203190 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 749 chr14 73256424 73257032 + 2 NA intron (NM_001365907, intron 13 of 25) AluSz6|SINE|Alu -10727 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 388.5-26 chr8 142952207 142952548 + 2 NA Intergenic Intergenic -34534 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 213-6 chr14 73108841 73108985 + 2 NA intron (NM_021239, intron 13 of 18) intron (NM_021239, intron 13 of 18) -27594 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 385.5-21 chr19 31717965 31718278 + 2 NA Intergenic Intergenic 125840 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 277-35 chr4 59980626 59980847 + 2 NA Intergenic LTR29|LTR|ERV1 -941883 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 295 chr1 23500361 23500659 + 2 NA Intergenic L1M5|LINE|L1 -16331 NM_001143778 55616 Hs.437379 NM_017707 ENSG00000088280 ASAP3 ACAP4|CENTB6|DDEFL1|UPLC1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding 385-37 chr7 41671134 41671459 + 2 NA Intergenic Intergenic -22623 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 435-22 chr4 41883614 41884205 + 2 NA Intergenic Intergenic -1298 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 381.5-21 chr6 53396322 53396680 + 2 NA Intergenic Intergenic -47322 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 173-17 chr8 78507066 78507212 + 2 NA Intergenic Intergenic -9201 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 499-8 chr2 109071941 109072495 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -56987 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 410.5-3 chr15 27337472 27337770 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -176302 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 219-13 chr13 38906531 38906694 + 2 NA Intergenic L1MEg|LINE|L1 -79021 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 670-7 chr2 12233748 12234214 + 2 NA intron (NR_110196, intron 3 of 5) L1M5|LINE|L1 34851 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 163-7 chr4 49136027 49136121 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 149432 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 281-21 chr2 53715691 53715883 + 2 NA intron (NM_001201965, intron 5 of 8) intron (NM_001201965, intron 5 of 8) -51996 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 456-3 chr1 107913165 107913588 + 2 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) 16153 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 190-15 chr7 84355966 84356093 + 2 NA Intergenic Intergenic -161240 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 224.5-30 chr8 37525531 37525653 + 2 NA Intergenic Intergenic -4206 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 420-20 chr2 185791359 185791705 + 2 NA exon (NM_173651, exon 16 of 23) exon (NM_173651, exon 16 of 23) 8618 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 221.5-15 chr2 209478879 209479118 + 2 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 54951 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 485.5-26 chrX 69932930 69933456 + 2 NA intron (NM_001005609, intron 1 of 7) HAL1|LINE|L1 -89664 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 331.5-11 chr17 26711126 26711383 + 2 NA Intergenic ALR/Alpha|Satellite|centr 377987 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 189.5-22 chr4 80426481 80426577 + 2 NA intron (NM_152770, intron 2 of 5) MER5A|DNA|hAT-Charlie 90809 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 396-12 chr15 87521662 87522037 + 2 NA Intergenic Intergenic -55080 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 361-14 chr15 62066617 62066880 + 2 NA promoter-TSS (NM_207322) promoter-TSS (NM_207322) -229 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 366.5-8 chr14 41215405 41215808 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 260895 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 384-17 chr2 104507017 104507384 + 2 NA intron (NR_015399, intron 2 of 3) MIR|SINE|MIR 3309 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 543-9 chr4 39068510 39068889 + 2 NA intron (NM_199039, intron 1 of 9) intron (NM_199039, intron 1 of 9) 6467 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 305-18 chr18 7960029 7960264 + 2 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 392830 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 299-23 chr3 138665790 138665982 + 2 NA intron (NM_006219, intron 19 of 23) intron (NM_006219, intron 19 of 23) 41735 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 409-34 chr8 118933293 118933559 + 2 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 18459 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 831.5-5 chr9 106580235 106581037 + 2 NA Intergenic L3|LINE|CR1 -20292 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 445-17 chr3 110213112 110213446 + 2 NA Intergenic L1MA3|LINE|L1 610451 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 403-18 chr16 67624511 67624793 + 2 NA intron (NM_006565, intron 7 of 11) AluJb|SINE|Alu -20492 NM_001013838 146206 Hs.611432 NM_001013838 ENSG00000159753 CARMIL2 CARMIL2b|IMD58|LRRC16C|RLTPR capping protein regulator and myosin 1 linker 2 protein-coding 628.5-9 chr5 106442317 106442987 + 2 NA Intergenic Intergenic 568362 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 579.5-5 chr17 67553206 67553577 + 2 NA intron (NM_181671, intron 3 of 9) intron (NM_181671, intron 3 of 9) -81806 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 323-6 chr10 97485221 97485408 + 2 NA intron (NM_001289403, intron 1 of 29) AluSq2|SINE|Alu 13108 NM_022362 64210 Hs.500721 NM_022362 ENSG00000155229 MMS19 CIAO4|MET18|MMS19L|hMMS19 MMS19 homolog, cytosolic iron-sulfur assembly component protein-coding 166-13 chr6 163086629 163086721 + 2 NA intron (NM_001080379, intron 3 of 4) intron (NM_001080379, intron 3 of 4) -32514 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 405.5-14 chr3 124038289 124038679 + 2 NA Intergenic Intergenic -46314 NM_001317774 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 433-19 chr3 128238795 128239336 + 2 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -85151 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 270.5-22 chr5 147114652 147115004 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -33308 NM_001271900 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 340.5-12 chr2 43205797 43206055 + 2 NA Intergenic Intergenic 20680 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 400-16 chr2 153414792 153415097 + 2 NA Intergenic Intergenic 63818 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 469-15 chr2 120702845 120703380 + 2 NA Intergenic Intergenic -32756 NM_001371271 301-36 chr8 134368649 134368827 + 2 NA Intergenic Intergenic -229333 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 543-16 chr8 52437569 52437989 + 2 NA Intergenic Intergenic -27900 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 228 chr12 65775043 65775245 + 2 NA intron (NR_026825, intron 1 of 1) L3|LINE|CR1 -49316 NM_001300919 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 347-31 chr9 113899399 113899697 + 2 NA intron (NM_001318042, intron 1 of 14) MER1B|DNA|hAT-Charlie 23239 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 175-18 chr8 105820600 105820688 + 2 NA intron (NR_125796, intron 2 of 7) L1MA1|LINE|L1 239859 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 231-27 chr7 85501285 85501494 + 2 NA Intergenic HERV35I-int|LTR|ERV1 80267 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 411-35 chr7 25256331 25256696 + 2 NA Intergenic Intergenic -28027 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 296-20 chr2 79228936 79229188 + 2 NA Intergenic L1PA16|LINE|L1 -69309 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 541.5-14 chr2 176359757 176360071 + 2 NA Intergenic Intergenic 90472 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 510-24 chr8 144353895 144354255 + 2 NA exon (NM_001280561, exon 4 of 6) exon (NM_001280561, exon 4 of 6) 856 NR_047684 340393 Hs.122231 NM_001252402 ENSG00000261587 TMEM249 C8ORFK29 transmembrane protein 249 protein-coding 422.5-18 chr5 114516464 114516969 + 2 NA intron (NR_130785, intron 3 of 12) L1MEd|LINE|L1 -59325 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 275-34 chr7 29171041 29171352 + 2 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 18861 NM_001371267 462.5-5 chr12 42050812 42051286 + 2 NA Intergenic L1MEd|LINE|L1 93825 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 313-20 chr2 227311863 227312066 + 2 NA 3' UTR (NM_000091, exon 52 of 52) 3' UTR (NM_000091, exon 52 of 52) 13200 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 417-2 chr1 111822596 111822944 + 2 NA intron (NM_172198, intron 2 of 6) L1MB3|LINE|L1 34135 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 243.5-35 chr8 132632597 132632885 + 2 NA exon (NM_001321963, exon 5 of 12) exon (NM_001321963, exon 5 of 12) 42804 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 298-26 chr6 119373323 119373560 + 2 NA Intergenic MER92B|LTR|ERV1 -23680 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 637-15 chr8 89280762 89281272 + 2 NA Intergenic SVA_E|Retroposon|SVA 476694 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 449-29 chr6 92501939 92502258 + 2 NA Intergenic Intergenic -811670 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 507.5-3 chr1 157768047 157768448 + 2 NA intron (NM_001159488, intron 5 of 8) intron (NM_001159488, intron 5 of 8) 8885 NM_001159488 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 329-38 chrX 94478874 94479194 + 2 NA Intergenic HERVL-int|LTR|ERVL 584192 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 140.5-9 chr14 70044236 70044374 + 2 NA TTS (NR_104122) TTS (NR_104122) 35912 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 263-13 chr19 34591096 34591240 + 2 NA 3' UTR (NM_001025591, exon 3 of 3) 3' UTR (NM_001025591, exon 3 of 3) 3417 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 510-10 chr15 59560670 59561021 + 2 NA Intergenic Intergenic -50938 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 335.5-13 chr15 87518859 87519253 + 2 NA Intergenic MER21C|LTR|ERVL -57873 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 300.5-2 chr1 77219657 77219896 + 2 NA promoter-TSS (NM_005482) promoter-TSS (NM_005482) -346 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 333-28 chr4 39065537 39065797 + 2 NA intron (NM_199039, intron 1 of 9) intron (NM_199039, intron 1 of 9) 3435 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 273.5-2 chr1 195579331 195579490 + 2 NA Intergenic L1MDa|LINE|L1 509305 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 489-8 chr12 5595093 5595535 + 2 NA intron (NM_001278596, intron 21 of 25) AluJr|SINE|Alu 101182 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 368-18 chr2 37355323 37355685 + 2 NA intron (NM_012413, intron 2 of 6) L4_C_Mam|LINE|RTE-X 10874 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 325.5-28 chr7 81721543 81721840 + 2 NA intron (NM_001010932, intron 9 of 17) L1MC4|LINE|L1 -30285 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 567.5-12 chr4 101647468 101648119 + 2 NA Intergenic Intergenic -142814 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 245.5-30 chr6 48241769 48241957 + 2 NA Intergenic Intergenic -173174 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 513.5-15 chr4 15758980 15759388 + 2 NA Intergenic Intergenic -19144 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 504-24 chr7 125405241 125405683 + 2 NA Intergenic L1MC3|LINE|L1 -141171 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 227.5-4 chr1 241602255 241602421 + 2 NA intron (NM_014322, intron 2 of 3) L2c|LINE|L2 33592 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 203.5-7 chr11 15234664 15234788 + 2 NA intron (NM_001042536, intron 9 of 12) intron (NM_001042536, intron 9 of 12) 85624 NM_001278313 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 355-11 chr16 26213198 26213448 + 2 NA Intergenic L2c|LINE|L2 188086 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 385-41 chr8 108530812 108531080 + 2 NA Intergenic Intergenic 87322 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 381-30 chr8 90450597 90451112 + 2 NA Intergenic MER57B2|LTR|ERV1 155209 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 160.5-22 chr8 91426838 91426969 + 2 NA Intergenic Intergenic 177584 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 428.5-18 chr4 181492127 181492541 + 2 NA Intergenic Intergenic -227305 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 339.5-20 chr4 34243495 34243972 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 26014 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 204-8 chr12 13142148 13142268 + 2 NA Intergenic L2b|LINE|L2 -38541 NM_001080554 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 440-11 chr17 34916681 34917146 + 2 NA Intergenic AluJo|SINE|Alu 44547 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 315-23 chr3 106519737 106519988 + 2 NA Intergenic Intergenic -650461 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 312-9 chr2 20833334 20833518 + 2 NA Intergenic Intergenic -10296 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 244.5-24 chr21 45218492 45218722 + 2 NA intron (NR_027674, intron 9 of 11) L1MEc|LINE|L1 -15733 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 542-13 chr2 35460533 35460976 + 2 NA Intergenic Intergenic -10651 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 489.5-21 chr8 84069228 84069665 + 2 NA Intergenic L1PA16|LINE|L1 -113341 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 245.5-32 chr6 69766492 69766793 + 2 NA intron (NM_001367272, intron 3 of 15) L1MB7|LINE|L1 29824 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 251-3 chr11 21181183 21181320 + 2 NA intron (NM_201551, intron 13 of 18) MADE1|DNA|TcMar-Mariner 511665 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 352.5-18 chr3 13815044 13815354 + 2 NA Intergenic Intergenic 64872 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 532-17 chr8 62862856 62863248 + 2 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -114809 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 169-16 chr6 64721260 64721411 + 2 NA intron (NM_001292009, intron 22 of 43) L2a|LINE|L2 -580083 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 438.5-12 chr7 137938721 137938950 + 2 NA intron (NM_001253775, intron 1 of 3) intron (NM_001253775, intron 1 of 3) -5847 NM_001318246 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 401-14 chr14 89277129 89277471 + 2 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 139933 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 302-24 chr5 56233273 56233541 + 2 NA promoter-TSS (NM_024669) promoter-TSS (NM_024669) -77 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 245-3 chr1 165234106 165234308 + 2 NA intron (NM_177398, intron 4 of 8) intron (NM_177398, intron 4 of 8) 122034 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 262-31 chr8 105262600 105262753 + 2 NA Intergenic L1PA11|LINE|L1 -55762 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 431-7 chr12 28982166 28982546 + 2 NA Intergenic Intergenic -166922 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 410-34 chr8 87765350 87765679 + 2 NA Intergenic Intergenic 108501 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 286-26 chr4 88788732 88788958 + 2 NA intron (NM_001265580, intron 1 of 15) intron (NM_001265580, intron 1 of 15) 34516 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 213.5-24 chr4 25064721 25064832 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -33830 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 227-3 chr10 32301344 32301519 + 2 NA intron (NM_001272004, intron 2 of 13) L1MD2|LINE|L1 45727 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 322.5 chr1 27948981 27949203 + 2 NA exon (NM_014474, exon 3 of 8) exon (NM_014474, exon 3 of 8) -10370 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 556.5-14 chr5 29949833 29950111 + 2 NA Intergenic L1MD2|LINE|L1 69412 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 852.5 chr3 100374919 100375651 + 2 NA intron (NM_014820, intron 6 of 11) L1MB7|LINE|L1 25804 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 274.5-4 chr10 78737210 78737371 + 2 NA Intergenic Intergenic 330158 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 464.5 chr1 32859655 32859962 + 2 NA TTS (NM_001256121) TTS (NM_001256121) 11005 NM_001171940 252995 Hs.524234 NM_153756 ENSG00000160097 FNDC5 FRCP2|irisin fibronectin type III domain containing 5 protein-coding 414-23 chr20 41950495 41950920 + 2 NA Intergenic L2a|LINE|L2 -332330 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 566-16 chr8 87623756 87624138 + 2 NA Intergenic Intergenic 250068 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 433.5-3 chr10 35812665 35813105 + 2 NA Intergenic Intergenic 34583 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 316.5-5 chr1 203979935 203980290 + 2 NA Intergenic AluSx1|SINE|Alu 61152 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 388.5-7 chr2 38610860 38611117 + 2 NA Intergenic AluSx1|SINE|Alu -7952 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 407.5-23 chr9 108790796 108791217 + 2 NA Intergenic L2a|LINE|L2 64980 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 419-28 chr7 122164123 122164610 + 2 NA Intergenic Intergenic -20117 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 425-22 chr16 80488673 80489059 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -51868 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 170-16 chr5 125748459 125748590 + 2 NA Intergenic Intergenic 255263 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 497.5-14 chr6 108827931 108828279 + 2 NA Intergenic L1ME2|LINE|L1 -20311 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 432.5-17 chr5 4310466 4310839 + 2 NA Intergenic Intergenic -462829 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 516-17 chr2 104786403 104786927 + 2 NA Intergenic Intergenic -28946 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 452.5-10 chr20 62606275 62606547 + 2 NA Intergenic Intergenic -36092 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 246.5-35 chr6 36223405 36223695 + 2 NA intron (NM_015695, intron 10 of 12) L1ME4c|LINE|L1 -19618 NM_001145716 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 212.5-9 chr12 52512966 52513102 + 2 NA Intergenic LTR53-int|LTR|ERVL 7360 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 259.5-4 chr10 27445757 27445963 + 2 NA Intergenic Intergenic -31492 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 831.5-4 chr6 147800737 147801335 + 2 NA Intergenic Intergenic 292346 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 277.5-5 chr1 208542556 208542701 + 2 NA Intergenic Intergenic -186060 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 557.5-16 chrX 100044868 100045421 + 2 NA Intergenic Intergenic 365129 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 139-9 chr6 69009761 69009882 + 2 NA intron (NM_001704, intron 11 of 31) intron (NM_001704, intron 11 of 31) 374539 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 354-31 chrX 95709562 95709844 + 2 NA Intergenic Intergenic 628199 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 404-19 chr16 73528006 73528311 + 2 NA Intergenic Intergenic 141353 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 277-13 chr14 50392754 50392972 + 2 NA intron (NM_001282236, intron 2 of 8) L2-1_AMi|LINE|L2 4018 NM_004196 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 365-28 chr7 81846195 81846443 + 2 NA Intergenic Intergenic -76272 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 637-2 chr2 36824418 36824821 + 2 NA Intergenic Intergenic 127912 NM_001177971 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 376-3 chr12 11607192 11607453 + 2 NA Intergenic Intergenic -42532 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 411.5-15 chr2 13278730 13279006 + 2 NA Intergenic Intergenic -271855 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 254.5-29 chr2 79648730 79649021 + 2 NA TTS (NR_036231) TTS (NR_036231) 484 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 420-36 chr9 106422658 106423067 + 2 NA Intergenic L2|LINE|L2 -178066 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 331.5-12 chr18 6016358 6016538 + 2 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -120494 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 508.5-22 chr6 162741543 162741945 + 2 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 13774 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 531.5-6 chr20 51835272 51835570 + 2 NA intron (NR_110016, intron 2 of 2) L2a|LINE|L2 27492 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 437-22 chr2 15791955 15792238 + 2 NA Intergenic L1PB3|LINE|L1 101314 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 177-15 chr4 136246791 136246920 + 2 NA Intergenic Intergenic -333175 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 249.5-14 chr2 86177761 86178070 + 2 NA intron (NM_006839, intron 3 of 14) intron (NM_006839, intron 3 of 14) 15193 NR_039939 100616159 NR_039939 ENSG00000265420 MIR4779 - microRNA 4779 ncRNA 442-10 chr18 6407231 6407490 + 2 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 7551 NM_001365768 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 390.5-21 chr22 47865663 47865876 + 2 NA Intergenic L1ME3|LINE|L1 234095 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 218.5-10 chr15 63840684 63840803 + 2 NA Intergenic Intergenic -6795 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 863-8 chr9 82309491 82309983 + 2 NA Intergenic Intergenic 320965 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 260-12 chr16 23577714 23577963 + 2 NA Intergenic L2b|LINE|L2 18478 NM_005003 4706 Hs.189716 NM_005003 ENSG00000004779 NDUFAB1 ACP|ACP1|FASN2A|SDAP NADH:ubiquinone oxidoreductase subunit AB1 protein-coding 612.5-9 chr22 38542576 38542932 + 2 NA intron (NM_007068, intron 8 of 13) L1M1|LINE|L1 25655 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 172-7 chr16 47420391 47420478 + 2 NA intron (NM_030790, intron 6 of 17) L1MA4A|LINE|L1 40629 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 468.5-8 chr20 44387781 44388075 + 2 NA intron (NR_109949, intron 2 of 3) L2|LINE|L2 7778 NR_109949 101927219 Hs.655919 NR_109949 ENSG00000229005 HNF4A-AS1 uc002xlx HNF4A antisense RNA 1 ncRNA 563.5-3 chr18 41728622 41729119 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -208193 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 431.5-11 chr2 171110914 171111225 + 2 NA intron (NM_012290, intron 2 of 20) L1MD|LINE|L1 -44096 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 165.5-25 chr8 121788751 121788858 + 2 NA Intergenic Intergenic -147364 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 426.5 chr1 47946570 47946920 + 2 NA intron (NM_001194986, intron 2 of 6) L1MC|LINE|L1 50640 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 377-33 chr9 32653115 32653485 + 2 NA Intergenic L1PA14|LINE|L1 -17631 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 395-28 chr5 150952705 150953202 + 2 NA Intergenic MER49|LTR|ERV1 -6369 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 677.5-6 chr8 69661962 69662392 + 2 NA Intergenic MIRc|SINE|MIR 69277 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 339-36 chr8 55891936 55892265 + 2 NA intron (NM_002350, intron 1 of 12) L3|LINE|CR1 10755 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 268-33 chrUn_KI270333v1 1026 1246 + 2 NA NA SAR|Satellite|Satellite NA NA 505.5-25 chr8 131725801 131726163 + 2 NA Intergenic MIR|SINE|MIR -178111 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 341-16 chr2 74195051 74195283 + 2 NA Intergenic AluSz6|SINE|Alu -3396 NR_027405 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 509-20 chr7 117333484 117333812 + 2 NA Intergenic L1M5|LINE|L1 -10590 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 400-19 chr21 45648036 45648435 + 2 NA intron (NM_001348240, intron 1 of 16) MLT1D|LTR|ERVL-MaLR 4510 NM_001348240 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 495-17 chr5 168532509 168532797 + 2 NA Intergenic Intergenic 3348 NM_001355274 345630 Hs.166262 NM_001355274 ENSG00000188573 FBLL1 - fibrillarin like 1 protein-coding 271-24 chr5 6655733 6655942 + 2 NA intron (NR_136739, intron 3 of 5) intron (NR_136739, intron 3 of 5) 22397 NM_001324323 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 327-25 chr2 57553083 57553328 + 2 NA Intergenic Intergenic -354446 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 281.5-34 chr6 39862086 39862261 + 2 NA intron (NM_015345, intron 3 of 24) MIR3|SINE|MIR 35207 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 223.5-15 chr16 67645144 67645269 + 2 NA promoter-TSS (NM_001013838) promoter-TSS (NM_001013838) 62 NM_001317026 146206 Hs.611432 NM_001013838 ENSG00000159753 CARMIL2 CARMIL2b|IMD58|LRRC16C|RLTPR capping protein regulator and myosin 1 linker 2 protein-coding 702-3 chr11 95406119 95406680 + 2 NA Intergenic L1M5|LINE|L1 -173924 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 331-23 chr16 81251827 81252159 + 2 NA intron (NM_017429, intron 2 of 10) intron (NM_017429, intron 2 of 10) 13304 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 286-31 chr7 109248597 109248823 + 2 NA Intergenic Intergenic -364123 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 360-46 chrX 101914500 101914782 + 2 NA intron (NM_001282401, intron 1 of 8) L1MA1|LINE|L1 17386 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 349.5 chr1 63915364 63915639 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 141484 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 435.5-23 chr9 104915626 104915997 + 2 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 12344 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 469.5-15 chr4 126274667 126275084 + 2 NA Intergenic Intergenic 767616 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 715.5-13 chr8 122375551 122376087 + 2 NA Intergenic MIRb|SINE|MIR 192825 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 237-17 chr3 43983175 43983362 + 2 NA Intergenic L1MA7|LINE|L1 -130944 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 376-7 chr15 56646416 56646666 + 2 NA intron (NM_001002843, intron 18 of 20) intron (NM_001002843, intron 18 of 20) 87545 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 474.5-14 chr6 128652178 128652576 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -131778 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 275-6 chr10 62961189 62961502 + 2 NA Intergenic Intergenic -142178 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 400-27 chr7 40890531 40890898 + 2 NA Intergenic L1M4c|LINE|L1 89225 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 521-5 chr13 68140714 68141044 + 2 NA Intergenic Intergenic 744446 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 349-12 chr11 95813259 95813513 + 2 NA intron (NM_014679, intron 3 of 10) intron (NM_014679, intron 3 of 10) 22888 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 314 chr1 39422788 39423012 + 2 NA exon (NM_012090, exon 54 of 93) exon (NM_012090, exon 54 of 93) 13827 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 249-10 chr12 120747356 120747529 + 2 NA Intergenic L1ME3|LINE|L1 21616 NM_000017 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 330-23 chr2 62736543 62736828 + 2 NA intron (NM_001142615, intron 2 of 22) L1MCa|LINE|L1 29788 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 197-12 chr12 72752454 72752581 + 2 NA Intergenic Intergenic -406673 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 288.5-30 chr3 113055042 113055350 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -35525 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 368.5-5 chr1 230108224 230108585 + 2 NA intron (NM_004481, intron 1 of 15) Tigger5b|DNA|TcMar-Tigger 41166 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 438-12 chr15 59106265 59106556 + 2 NA intron (NM_004701, intron 1 of 8) intron (NM_004701, intron 1 of 8) 1264 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 452.5-4 chr14 54346208 54346443 + 2 NA Intergenic Intergenic -50543 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 357-2 chr1 46008787 46009000 + 2 NA intron (NM_001324320, intron 10 of 29) intron (NM_001324320, intron 10 of 29) 121780 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 484-12 chr11 123918159 123918481 + 2 NA Intergenic L1MEc|LINE|L1 11888 NM_001005197 338662 Hs.449688 NM_001005197 ENSG00000181518 OR8D4 OR11-275 olfactory receptor family 8 subfamily D member 4 protein-coding 349-13 chr11 100849674 100849990 + 2 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -84442 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 496-18 chr20 58959179 58959559 + 2 NA Intergenic AluSx|SINE|Alu -21887 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 405-6 chr11 70705433 70705857 + 2 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -43804 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 544-8 chr3 108125153 108125471 + 2 NA promoter-TSS (NR_110028) promoter-TSS (NR_110028) 248 NR_110030 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 410-7 chr14 76331716 76332227 + 2 NA Intergenic Intergenic -39376 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 677.5-8 chr8 138453667 138454142 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 43357 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 477.5-16 chr22 44720928 44721209 + 2 NA intron (NM_181334, intron 2 of 14) intron (NM_181334, intron 2 of 14) 18864 NM_181333 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 334.5-7 chr10 108032727 108032969 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 36445 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 394.5-21 chr4 65233829 65234112 + 2 NA Intergenic Intergenic -229470 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 456.5-23 chrX 51404410 51404795 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -2346 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 439-17 chr6 60675594 60675929 + 2 NA Intergenic L1M4|LINE|L1 -898369 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 301-21 chr18 7724826 7725104 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 157649 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 456-26 chr5 128018903 128019306 + 2 NA intron (NR_152803, intron 1 of 1) L3|LINE|CR1 64071 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 228-2 chr12 126707795 126707984 + 2 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat -17571 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 484-2 chr1 35387688 35388238 + 2 NA intron (NM_005095, intron 13 of 29) intron (NM_005095, intron 13 of 29) -21886 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 607.5-7 chr18 2622662 2623113 + 2 NA Intergenic AluSx|SINE|Alu 32508 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 345.5-17 chr2 35952189 35952395 + 2 NA Intergenic Intergenic 403278 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 253.5-4 chr11 91152794 91152981 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -283685 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 566.5 chr10 54701593 54701943 + 2 NA intron (NM_001354404, intron 4 of 34) L1PA15|LINE|L1 -93811 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 563.5-5 chr21 30691379 30691818 + 2 NA Intergenic Intergenic 27179 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 314.5-30 chr6 42073794 42074001 + 2 NA intron (NM_138572, intron 7 of 8) L2a|LINE|L2 23373 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 382-10 chr14 37092417 37092633 + 2 NA intron (NM_001171170, intron 1 of 10) MLT1L|LTR|ERVL-MaLR -79501 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 495-2 chr11 30825273 30825575 + 2 NA Intergenic Intergenic 167262 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 329-20 chr22 48276081 48276400 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 1876 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 303-22 chr4 60004028 60004326 + 2 NA Intergenic L1PA16|LINE|L1 -918442 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 501-8 chr15 70155975 70156359 + 2 NA Intergenic Intergenic -58250 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 555-29 chr9 119089849 119090481 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 279270 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 340-37 chr8 81068306 81068535 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 43648 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 465-31 chr6 69188900 69189323 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 553829 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 359-4 chr1 164180256 164180485 + 2 NA Intergenic L2|LINE|L2 -378990 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 379-28 chr20 45700225 45700582 + 2 NA intron (NM_172006, intron 2 of 3) L1M5|LINE|L1 -1635 NM_172005 164237 Hs.406733 NM_172005 ENSG00000168634 WFDC13 C20orf138|WAP13|dJ601O1.3 WAP four-disulfide core domain 13 protein-coding 186-30 chrX 74313200 74313377 + 2 NA Intergenic Intergenic 9108 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 602-16 chr4 108219331 108219764 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 47427 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 251-24 chr3 62584236 62584453 + 2 NA intron (NM_003716, intron 8 of 29) intron (NM_003716, intron 8 of 29) -210794 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 610.5-9 chr22 28270597 28271212 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -188965 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 654-9 chr2 220290150 220290706 + 2 NA Intergenic L2c|LINE|L2 -383863 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 379-26 chr2 228707639 228707891 + 2 NA Intergenic Intergenic -96370 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 262-27 chr5 57093905 57094149 + 2 NA Intergenic Intergenic -79921 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 357-26 chr3 88889844 88890068 + 2 NA Intergenic Intergenic -217665 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 585-13 chr5 149113123 149113740 + 2 NA Intergenic AluSx1|SINE|Alu -28016 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 206.5-41 chr9 37125407 37125663 + 2 NA intron (NM_001289121, intron 1 of 8) intron (NM_001289121, intron 1 of 8) 4937 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 483-12 chr14 79996168 79996472 + 2 NA Intergenic Intergenic -215099 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 371.5-20 chr21 34006328 34006705 + 2 NA Intergenic Intergenic 30134 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 409.5-4 chr12 46808256 46808552 + 2 NA intron (NM_018018, intron 1 of 16) intron (NM_018018, intron 1 of 16) 17593 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 325-19 chr5 15698328 15698550 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -83437 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 347-12 chr2 43322986 43323282 + 2 NA intron (NR_144316, intron 29 of 36) AluJr|SINE|Alu 95923 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 474-3 chr11 79807149 79807520 + 2 NA Intergenic Intergenic -366304 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 181-19 chr7 31952985 31953109 + 2 NA intron (NM_001322059, intron 3 of 17) L2c|LINE|L2 117360 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 435.5-5 chr2 223683171 223683433 + 2 NA Intergenic L1ME4a|LINE|L1 -80941 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 257-48 chrX 130500685 130500823 + 2 NA Intergenic Intergenic 5813 NR_027141 55855 Hs.567120 NM_018472 DENND10P1 FAM45B|FAM45BP|HT011 DENND10 pseudogene 1 pseudo 325.5 chr1 59399498 59400010 + 2 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 89722 NM_001350794 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 348-30 chr6 128675958 128676271 + 2 NA Intergenic Intergenic -155515 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 165-9 chr5 173125323 173125518 + 2 NA intron (NM_153607, intron 8 of 8) HAL1M8|LINE|L1 -19111 NM_001205 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 228-3 chr15 43410295 43410520 + 2 NA TTS (NM_001286414) TTS (NM_001286414) 39306 NM_014444 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 431.5-5 chr12 16222716 16223119 + 2 NA intron (NM_001170798, intron 6 of 8) intron (NM_001170798, intron 6 of 8) 54768 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 210-15 chr2 63732547 63732689 + 2 NA Intergenic Intergenic -108346 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 366.5-32 chr8 133172838 133173144 + 2 NA Intergenic AluJr|SINE|Alu -18048 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 384-13 chr2 57450797 57451099 + 2 NA Intergenic AluJb|SINE|Alu -456703 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 162-8 chr2 133355320 133355422 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 89176 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 432-28 chr8 127621131 127621601 + 2 NA Intergenic AluSx1|SINE|Alu 112601 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 269.5-13 chr13 104928106 104928447 + 2 NA Intergenic L2c|LINE|L2 -537591 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 439-6 chr2 162633623 162633874 + 2 NA intron (NM_033272, intron 2 of 15) L1M5|LINE|L1 -135188 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 408.5-2 chr1 183004252 183004732 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -18928 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 528-10 chr14 55288269 55288562 + 2 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 16261 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 531.5-12 chr6 11663370 11663796 + 2 NA Intergenic MER61A|LTR|ERV1 115464 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 146.5-2 chr1 170334102 170334214 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -49950 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 352.5-23 chr4 117814353 117814641 + 2 NA Intergenic Intergenic -19904 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 609-4 chr2 13296204 13296599 + 2 NA Intergenic Intergenic -289388 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 529.5-23 chr8 121698507 121698937 + 2 NA Intergenic L1ME3A|LINE|L1 -57282 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 529-15 chr20 59718132 59718617 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -2836 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 366.5-14 chr17 50214287 50214684 + 2 NA promoter-TSS (NR_110806) promoter-TSS (NR_110806) -209 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 557-13 chr2 115176631 115177185 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 14753 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 382-15 chr15 90136702 90136917 + 2 NA Intergenic HERVH-int|LTR|ERV1 -34255 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 550-20 chr5 107687079 107687654 + 2 NA Intergenic L1MA3|LINE|L1 -16429 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 400-8 chr14 61665229 61665585 + 2 NA Intergenic AluSc|SINE|Alu -30106 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 465.5-20 chr7 3482231 3482768 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 181247 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 444.5-21 chr8 125708712 125709064 + 2 NA Intergenic Intergenic 242309 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 332-27 chr3 183450942 183451157 + 2 NA promoter-TSS (NR_145727) promoter-TSS (NR_145727) -810 NR_145727 109616971 NR_145727 ENSG00000201229 SNORA63D - small nucleolar RNA, H/ACA box 63D snoRNA 226.5-4 chr11 84286391 84286524 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -13177 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 543.5-19 chr9 137112195 137112774 + 2 NA intron (NM_013379, intron 8 of 12) intron (NM_013379, intron 8 of 12) 2249 NM_013379 29952 Hs.37916 NM_013379 ENSG00000176978 DPP7 DPP2|DPPII|QPP dipeptidyl peptidase 7 protein-coding 364-19 chr2 59493909 59494273 + 2 NA Intergenic L1PA16|LINE|L1 276383 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 322.5-12 chr18 48383946 48384109 + 2 NA intron (NM_001371287, intron 1 of 5) intron (NM_001371287, intron 1 of 5) -8400 NM_001371290 156-3 chr10 50797450 50797540 + 2 NA Intergenic Intergenic 57559 NM_001321957 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 206-18 chr5 44008374 44008486 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -380302 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 636-21 chr8 4502375 4502905 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 492274 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 433-29 chr6 166535240 166535531 + 2 NA intron (NM_001006932, intron 3 of 21) intron (NM_001006932, intron 3 of 21) 9305 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 336-38 chr3 138219061 138219381 + 2 NA intron (NM_213654, intron 3 of 12) intron (NM_213654, intron 3 of 12) 31690 NM_015396 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 279-4 chr11 26154365 26154535 + 2 NA Intergenic Intergenic -34673 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 411-37 chr7 75915421 75915750 + 2 NA TTS (NR_039795) TTS (NR_039795) 388 NR_039795 100616270 NR_039795 ENSG00000284334 MIR4651 mir-4651 microRNA 4651 ncRNA 459.5-6 chr12 117369106 117369394 + 2 NA Intergenic MIRb|SINE|MIR -7448 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 378.5-3 chr10 7740323 7740614 + 2 NA intron (NM_002216, intron 16 of 20) intron (NM_002216, intron 16 of 20) 37152 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 532.5-5 chr1 227025856 227026278 + 2 NA exon (NM_001366010, exon 29 of 35) exon (NM_001366010, exon 29 of 35) 85773 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 354-20 chr22 27322787 27323123 + 2 NA Intergenic Intergenic 12304 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 511-22 chr5 119409130 119409408 + 2 NA Intergenic Intergenic -43228 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 333.5-5 chr12 68311163 68311544 + 2 NA intron (NM_001368282, intron 11 of 13) L2a|LINE|L2 21009 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 473-25 chr8 39909898 39910372 + 2 NA Intergenic LTR49-int|LTR|ERV1 -3756 NM_002164 3620 Hs.840 NM_002164 ENSG00000131203 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 418-28 chr7 124721749 124722145 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 43845 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 248-23 chr7 118038177 118038419 + 2 NA Intergenic Intergenic -145866 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 230-22 chr3 58985812 58985973 + 2 NA intron (NR_110820, intron 2 of 2) L2c|LINE|L2 64133 NM_001351532 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 389.5-7 chr10 19132576 19132819 + 2 NA intron (NM_001142308, intron 8 of 39) intron (NM_001142308, intron 8 of 39) 83896 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 377-30 chr7 136158356 136158617 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -181127 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 229-30 chr7 17127230 17127396 + 2 NA Intergenic Intergenic -171339 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 435.5-20 chr8 117115967 117116262 + 2 NA intron (NM_001172815, intron 2 of 10) L2a|LINE|L2 -18881 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 530.5 chr1 112783080 112783473 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 62709 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 566.5-4 chr14 82035355 82035829 + 2 NA Intergenic Intergenic -292454 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 217-24 chr7 30728768 30729003 + 2 NA Intergenic LTR16A1|LTR|ERVL -23250 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 359.5-15 chr16 3793550 3793744 + 2 NA intron (NM_004380, intron 3 of 30) intron (NM_004380, intron 3 of 30) -76123 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 299-16 chr2 22236212 22236439 + 2 NA Intergenic Intergenic -300154 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 409-2 chr10 56410323 56410597 + 2 NA Intergenic MIRb|SINE|MIR -49187 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 820-2 chr3 84458773 84459341 + 2 NA Intergenic Intergenic 410518 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 434 chr1 165000235 165000508 + 2 NA Intergenic L2c|LINE|L2 -225730 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 180.5-23 chr8 133162529 133162697 + 2 NA Intergenic Intergenic -28426 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 496-23 chr6 164699964 164700363 + 2 NA Intergenic L1MEg|LINE|L1 121900 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 546-11 chr3 155002859 155003286 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -21052 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 286-9 chr14 56734561 56734745 + 2 NA Intergenic L1ME4b|LINE|L1 71014 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 257-26 chr2 210847775 210847936 + 2 NA Intergenic L1MA4|LINE|L1 230284 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 544.5-9 chr5 75518068 75518535 + 2 NA intron (NM_001345921, intron 1 of 13) L1M3f|LINE|L1 -6320 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 424-14 chr22 45547771 45548109 + 2 NA intron (NM_006487, intron 12 of 14) MIRb|SINE|MIR 45057 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 283.5-35 chr8 118657403 118657767 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -35622 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 279-26 chr4 51920585 51920776 + 2 NA Intergenic L1MD3|LINE|L1 77101 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 494.5-16 chr8 79197825 79198116 + 2 NA Intergenic Intergenic -134218 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 284.5-19 chr16 5024586 5024747 + 2 NA TTS (NM_016256) TTS (NM_016256) -9036 NR_038913 100507589 Hs.729936 NR_038913 NAGPA-AS1 - NAGPA antisense RNA 1 ncRNA 317.5-19 chr2 184828806 184829284 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 230516 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 182.5 chr1 201530648 201530842 + 2 NA intron (NR_160748, intron 2 of 2) intron (NR_160748, intron 2 of 2) 10841 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 290-22 chr3 69365420 69365629 + 2 NA intron (NM_015123, intron 1 of 22) AluSz|SINE|Alu 20564 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 400.5-23 chr5 152274869 152275096 + 2 NA Intergenic L1MA8|LINE|L1 130297 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 239-29 chr8 142788798 142788980 + 2 NA Intergenic Intergenic -2350 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 290-31 chr7 15803391 15803656 + 2 NA Intergenic Intergenic 115145 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 188-3 chr11 101804526 101804712 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -110391 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 385-23 chr3 41958152 41958414 + 2 NA intron (NR_136342, intron 1 of 34) L1MB2|LINE|L1 3820 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 207.5-12 chr13 63931898 63932001 + 2 NA Intergenic Intergenic -87824 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 215.5-7 chr10 22551413 22551591 + 2 NA intron (NM_005028, intron 6 of 9) intron (NM_005028, intron 6 of 9) -113573 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 239-3 chr10 75670416 75670610 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 23004 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 387-33 chr7 30017113 30017406 + 2 NA intron (NR_046478, intron 4 of 4) intron (NR_046478, intron 4 of 4) 9443 NR_046478 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 307.5-40 chr8 84281179 84281559 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 96703 NM_001354321 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 426-9 chr12 110579932 110580188 + 2 NA intron (NR_138550, intron 1 of 4) intron (NR_138550, intron 1 of 4) 3258 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 418-11 chr16 63924448 63924683 + 2 NA Intergenic Intergenic 1197498 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 367-6 chr1 194381583 194381871 + 2 NA Intergenic L1P4a|LINE|L1 1076982 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 211-3 chr11 65431281 65431483 + 2 NA non-coding (NR_131012, exon 1 of 1) non-coding (NR_131012, exon 1 of 1) 8584 NR_131012 283131 Hs.523789 NR_002802 ENSG00000245532 NEAT1 LINC00084|NCRNA00084|TncRNA|VINC nuclear paraspeckle assembly transcript 1 ncRNA 293.5-10 chr15 72044916 72045062 + 2 NA intron (NM_006901, intron 2 of 41) intron (NM_006901, intron 2 of 41) -69269 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 317.5-15 chr2 104072568 104072853 + 2 NA Intergenic Intergenic 335622 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 463-25 chr7 91778346 91778905 + 2 NA Intergenic Intergenic 102077 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 146.5-14 chr17 78893635 78893768 + 2 NA intron (NM_001243541, intron 2 of 2) intron (NM_001243541, intron 2 of 2) 9500 NM_001243541 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 229.5-10 chr15 94785788 94785950 + 2 NA Intergenic Intergenic -69494 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 595-4 chr12 64939540 64939894 + 2 NA intron (NR_146276, intron 3 of 3) L1MEh|LINE|L1 52574 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 465-6 chr1 114850063 114850418 + 2 NA Intergenic L2a|LINE|L2 -4563 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 427.5-26 chr7 28630271 28630528 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -55734 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 597-23 chr6 149602297 149602699 + 2 NA intron (NM_001204076, intron 4 of 7) intron (NM_001204076, intron 4 of 7) 8882 NR_077247 645958 Hs.632614 NR_077247 RPS18P9 RPS18_6_767 ribosomal protein S18 pseudogene 9 pseudo 260-37 chr9 100414203 100414366 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 -12929 NM_001198807 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 288-16 chr18 65335421 65335680 + 2 NA Intergenic Intergenic -414702 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 577.5-10 chr14 74932990 74933549 + 2 NA Intergenic AluSq|SINE|Alu -10009 NM_001370255 83694 Hs.414481 NM_031464 ENSG00000198208 RPS6KL1 RSKL2 ribosomal protein S6 kinase like 1 protein-coding 184 chr10 60634195 60634337 + 2 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -61310 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 489-28 chr5 164849368 164849670 + 2 NA Intergenic L1ME1|LINE|L1 379240 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 506-22 chr5 51079135 51079443 + 2 NA Intergenic Intergenic -109102 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 242-3 chr11 104482173 104482389 + 2 NA Intergenic L1M1|LINE|L1 127021 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 455.5-14 chr2 142786053 142786471 + 2 NA Intergenic L1ME3A|LINE|L1 -91402 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 176-8 chr2 217569687 217569846 + 2 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 186827 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 280-33 chr7 29836159 29836411 + 2 NA intron (NM_001080529, intron 2 of 8) intron (NM_001080529, intron 2 of 8) 29731 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 349-22 chr20 43771739 43772055 + 2 NA Intergenic Intergenic -44895 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 367.5-21 chr3 33308994 33309240 + 2 NA intron (NR_146129, intron 4 of 15) L1M1|LINE|L1 31675 NR_146130 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 234-10 chr14 88871631 88871834 + 2 NA intron (NR_159362, intron 12 of 14) intron (NR_159362, intron 12 of 14) 47081 NM_001366535 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 883-2 chr12 61655176 61655666 + 2 NA Intergenic LTR49-int|LTR|ERV1 537418 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 252.5-25 chr7 86084285 86084486 + 2 NA Intergenic Intergenic -559524 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 289-37 chr5 16288363 16288736 + 2 NA Intergenic L2a|LINE|L2 108308 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 426-10 chr14 28113634 28114111 + 2 NA Intergenic Intergenic -440651 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 406-28 chrX 125772195 125772500 + 2 NA Intergenic Intergenic -337415 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 480-3 chr1 216226692 216227050 + 2 NA intron (NM_206933, intron 14 of 71) LTR78|LTR|ERV1 154406 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 403-34 chr7 46050742 46051338 + 2 NA Intergenic AluSq2|SINE|Alu -129768 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 376.5-3 chr10 21104034 21104250 + 2 NA intron (NM_001173484, intron 2 of 6) L1ME1|LINE|L1 -69848 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 266-18 chr17 82491506 82491666 + 2 NA Intergenic Intergenic -28146 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 255.5-16 chr2 129823581 129823858 + 2 NA Intergenic L1ME4a|LINE|L1 53772 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 327-20 chr17 57319920 57320164 + 2 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 63023 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 435-8 chr13 96258236 96258527 + 2 NA intron (NM_153456, intron 1 of 1) (CAA)n|Simple_repeat|Simple_repeat 167542 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 201-13 chr18 5886630 5886758 + 2 NA Intergenic MIR|SINE|MIR 9260 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 308-34 chr7 7353721 7353954 + 2 NA Intergenic Intergenic 98683 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 216.5-14 chr14 58025506 58025747 + 2 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 126587 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 455.5-10 chr17 76231614 76231878 + 2 NA intron (NM_052916, intron 1 of 18) intron (NM_052916, intron 1 of 18) 8747 NM_052916 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 649.5-6 chr2 157158472 157158951 + 2 NA Intergenic MIR3|SINE|MIR -98994 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 187.5-7 chr12 105546418 105546621 + 2 NA Intergenic Intergenic -157684 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 279-6 chr12 21559515 21559761 + 2 NA intron (NM_021957, intron 9 of 15) intron (NM_021957, intron 9 of 15) 31713 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 445-14 chr2 239746679 239746939 + 2 NA Intergenic Intergenic -16051 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 210.5-26 chr6 105396982 105397281 + 2 NA intron (NM_002726, intron 2 of 14) AluSz6|SINE|Alu 5951 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 433.5 chr1 20416065 20416391 + 2 NA intron (NR_033887, intron 1 of 11) L1MD3|LINE|L1 12566 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 322-16 chr22 36067036 36067337 + 2 NA Intergenic MLT2C1|LTR|ERVL -38362 NM_001082578 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 480-22 chr22 21867953 21868244 + 2 NA promoter-TSS (NM_138957) promoter-TSS (NM_138957) -418 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 496-25 chr7 71252843 71253199 + 2 NA intron (NM_022479, intron 1 of 10) MER4CL34|LTR|ERV1 -54653 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 376-16 chr2 50511852 50512175 + 2 NA intron (NM_001330096, intron 7 of 16) MIR3|SINE|MIR -164257 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 411.5-17 chr2 155569311 155569577 + 2 NA Intergenic L2|LINE|L2 685487 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 281-12 chr12 46665361 46665553 + 2 NA Intergenic Intergenic 160540 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 445.5-16 chr4 255745 256114 + 2 NA TTS (NR_027481) TTS (NR_027481) 43329 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 208-5 chr10 77389309 77389460 + 2 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 38512 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 564.5-3 chr11 93062916 93063308 + 2 NA Intergenic Intergenic 93489 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 288-40 chr8 129963563 129963807 + 2 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -23874 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 668 chr1 79333600 79334213 + 2 NA Intergenic Intergenic -327176 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 177-5 chr13 34964559 34964690 + 2 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 22337 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 204-7 chr12 253130 253258 + 2 NA TTS (NR_120482) TTS (NR_120482) 4105 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 253.5-18 chr2 138723216 138723460 + 2 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 57052 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 314-44 chrX 68435350 68435628 + 2 NA Intergenic Intergenic -1994 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 352-3 chr10 66651615 66651912 + 2 NA intron (NM_001127384, intron 9 of 17) LTR12C|LTR|ERV1 -274273 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 222-25 chr6 82785620 82785749 + 2 NA Intergenic Intergenic 280157 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 256-12 chr18 11678218 11678369 + 2 NA Intergenic LTR75|LTR|ERVL -10971 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 307.5-32 chr6 116970995 116971292 + 2 NA Intergenic Intergenic 93901 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 558-13 chr3 99506874 99507241 + 2 NA Intergenic Intergenic -131537 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 197.5-29 chr4 183205496 183205615 + 2 NA intron (NM_024949, intron 2 of 22) L1MEc|LINE|L1 35079 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 554-16 chr21 18285787 18286447 + 2 NA intron (NM_002772, intron 21 of 24) L2a|LINE|L2 40242 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 465-36 chrX 40045162 40045537 + 2 NA Intergenic AluSq2|SINE|Alu 52117 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 609-17 chr5 58408829 58409323 + 2 NA Intergenic MER4A1_|LTR|ERV1 51010 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 475-12 chr17 54841690 54841965 + 2 NA Intergenic Intergenic -58864 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 466-8 chr11 75814891 75815341 + 2 NA promoter-TSS (NR_144531) promoter-TSS (NR_144531) -94 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 263-21 chr4 152386925 152387160 + 2 NA intron (NM_033632, intron 2 of 11) intron (NM_033632, intron 2 of 11) -4513 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 269-38 chrX 128166555 128166728 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -114238 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 160-12 chr3 193122574 193122666 + 2 NA Intergenic Intergenic -118602 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 340.5-30 chr8 55076438 55076647 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -25486 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 277.5-22 chr3 24987564 24987839 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 158378 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 409.5-22 chr5 66768683 66769045 + 2 NA intron (NM_001290228, intron 2 of 4) L1MD1|LINE|L1 -59909 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 249-6 chr11 23272236 23272450 + 2 NA Intergenic Intergenic 146847 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 482-19 chr7 20459442 20459781 + 2 NA Intergenic Intergenic -127849 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 392-10 chr11 95121339 95121583 + 2 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) -29078 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 318.5 chr10 60658209 60658456 + 2 NA intron (NM_001204403, intron 1 of 43) L1M4a1|LINE|L1 75196 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 273-27 chr3 125049604 125049821 + 2 NA intron (NM_020733, intron 1 of 16) intron (NM_020733, intron 1 of 16) 6285 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 547-17 chr7 5659234 5659616 + 2 NA intron (NM_207111, intron 13 of 16) L2b|LINE|L2 21036 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 221-28 chr8 102373384 102373570 + 2 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 39212 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 552-2 chr1 63989552 63989955 + 2 NA intron (NM_005012, intron 1 of 8) Plat_L3|LINE|CR1 122452 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 241-24 chr8 142120504 142120679 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -55748 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 549.5-8 chr3 149417797 149418136 + 2 NA Intergenic Intergenic 40188 NR_046650 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 315.5-16 chr2 24543419 24543588 + 2 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) -40974 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 313.5-8 chr11 92827286 92827690 + 2 NA intron (NM_001008781, intron 12 of 24) MIR3|SINE|MIR 88140 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 412-21 chr3 72199592 72199918 + 2 NA Intergenic Intergenic 48498 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 284.5-11 chr11 83006765 83007002 + 2 NA intron (NM_001286060, intron 1 of 4) intron (NM_001286060, intron 1 of 4) 27391 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 269-25 chr3 49119084 49119311 + 2 NA 5' UTR (NM_001351106, exon 2 of 26) 5' UTR (NM_001351106, exon 2 of 26) 1741 NM_001199160 10869 Hs.255596 NM_006677 ENSG00000172046 USP19 ZMYND9 ubiquitin specific peptidase 19 protein-coding 298-32 chr8 131436314 131436484 + 2 NA Intergenic L1MA4|LINE|L1 -395490 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 216-8 chr15 42541480 42541617 + 2 NA 3' UTR (NM_153260, exon 6 of 6) 3' UTR (NM_153260, exon 6 of 6) 7245 NM_153260 255252 Hs.234681 NM_153260 ENSG00000180979 LRRC57 - leucine rich repeat containing 57 protein-coding 388.5-5 chr19 48189543 48189851 + 2 NA intron (NM_199341, intron 3 of 3) L1ME4b|LINE|L1 19017 NM_199341 374920 Hs.664054 NM_199341 ENSG00000185453 ZSWIM9 C19orf68 zinc finger SWIM-type containing 9 protein-coding 505-15 chr2 74983214 74983743 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 24835 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 347-14 chr2 201566934 201567187 + 2 NA intron (NM_001168221, intron 8 of 15) MIR|SINE|MIR 52118 NM_152525 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 354.5-23 chr21 43693634 43693945 + 2 NA 3' UTR (NM_015056, exon 16 of 16) 3' UTR (NM_015056, exon 16 of 16) -25340 NM_003681 8566 Hs.284491 NM_003681 ENSG00000160209 PDXK C21orf124|C21orf97|HEL-S-1a|PKH|PNK|PRED79 pyridoxal kinase protein-coding 586-17 chr8 13658887 13659328 + 2 NA Intergenic MIRb|SINE|MIR 29417 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 217-8 chr16 34097520 34097658 + 2 NA Intergenic AluJo|SINE|Alu -65989 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 411-16 chr2 8110050 8110306 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -133364 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 485.5-20 chr7 4379488 4379843 + 2 NA Intergenic Intergenic -244828 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 316-4 chr10 53902386 53902583 + 2 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -583746 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 309-6 chr11 65623184 65623451 + 2 NA intron (NM_032223, intron 11 of 34) intron (NM_032223, intron 11 of 34) 7005 NM_032223 399909 Hs.380801 NM_032223 ENSG00000197136 PCNX3 PCNXL3 pecanex 3 protein-coding 451 chr1 52393021 52393363 + 2 NA intron (NM_001190818, intron 6 of 16) MER5A|DNA|hAT-Charlie 11231 NM_004153 4998 Hs.17908 NM_004153 ENSG00000085840 ORC1 HSORC1|ORC1L|PARC1 origin recognition complex subunit 1 protein-coding 350-2 chr1 170490093 170490362 + 2 NA intron (NR_125958, intron 1 of 2) L1PA15|LINE|L1 -41895 NM_001146039 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 330-10 chr10 72219256 72219494 + 2 NA intron (NM_001366791, intron 1 of 3) intron (NM_001366791, intron 1 of 3) -2241 NR_045564 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 225-36 chr9 107166088 107166227 + 2 NA Intergenic MER90|LTR|ERV1 -63169 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 403-40 chr9 33468532 33468848 + 2 NA promoter-TSS (NR_106910) promoter-TSS (NR_106910) -755 NR_106910 102465512 NR_106910 ENSG00000275651 MIR6851 hsa-mir-6851 microRNA 6851 ncRNA 291-12 chr18 8573025 8573372 + 2 NA Intergenic Intergenic -36247 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 224-12 chr17 62321392 62321520 + 2 NA Intergenic AluJr|SINE|Alu -45801 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 327-31 chr20 56481621 56481817 + 2 NA intron (NM_001283036, intron 4 of 8) L1MB5|LINE|L1 13134 NM_016407 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 336-44 chr5 65427078 65427402 + 2 NA intron (NR_135689, intron 7 of 25) (TTTCTA)n|Simple_repeat|Simple_repeat 54680 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 188-9 chr16 65444250 65444361 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 131995 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 330.5-5 chr1 208507354 208507702 + 2 NA Intergenic L1MA5A|LINE|L1 -221160 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 415-26 chr6 131878807 131879177 + 2 NA intron (NM_006208, intron 19 of 24) intron (NM_006208, intron 19 of 24) 70972 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 244.5-29 chr4 32592617 32592872 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 241706 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 297.5-6 chr12 39594611 39594809 + 2 NA intron (NM_005164, intron 6 of 9) AluSx|SINE|Alu 25093 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 254.5-43 chr7 42222318 42222462 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 14819 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 269.5-23 chr2 162157082 162157329 + 2 NA intron (NR_110255, intron 1 of 3) intron (NR_110255, intron 1 of 3) -4958 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 268-6 chr14 57595331 57595544 + 2 NA intron (NM_001306087, intron 1 of 7) L1MC3|LINE|L1 -101580 NM_001283060 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 328-18 chr18 79990422 79990660 + 2 NA intron (NM_001305564, intron 1 of 2) intron (NM_001305564, intron 1 of 2) -1978 NM_006701 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 614-9 chr3 102844217 102844646 + 2 NA Intergenic Intergenic 409416 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 155.5-3 chr12 27977428 27977565 + 2 NA Intergenic Intergenic -4763 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 389-4 chr10 119938271 119938614 + 2 NA intron (NM_007190, intron 18 of 18) L1ME4a|LINE|L1 -20071 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 249.5-10 chr14 65143728 65143922 + 2 NA Intergenic LTR85b|LTR|Gypsy? -41130 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 283.5-5 chr10 97138393 97138630 + 2 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) 35755 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 298.5-29 chr9 102778189 102778373 + 2 NA Intergenic LTR1B|LTR|ERV1 -217052 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 368 chr1 164974342 164974645 + 2 NA Intergenic MIRb|SINE|MIR -199852 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 459-11 chr2 30710034 30710312 + 2 NA Intergenic Intergenic 97273 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 405.5-13 chr3 96843683 96844055 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 29275 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 389-32 chr3 106293368 106293694 + 2 NA Intergenic Intergenic -424130 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 266-35 chr5 44311741 44311967 + 2 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -76878 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 461.5-15 chr7 630086 630488 + 2 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 26889 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 223.5-33 chr6 53040262 53040422 + 2 NA intron (NM_014920, intron 2 of 13) MLT1F2|LTR|ERVL-MaLR 21460 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 396-23 chr5 5294222 5294538 + 2 NA intron (NM_139056, intron 18 of 22) MLT2D|LTR|ERVL -128297 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 294.5-17 chr2 39133004 39133199 + 2 NA Intergenic Intergenic -12638 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 262-17 chr16 12866991 12867211 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -34497 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 232-17 chr2 57965013 57965140 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 57425 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 540-23 chr7 80122374 80122754 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger -12267 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 192-22 chr5 169467414 169467530 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -116301 NM_001329643 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 174-12 chr2 114658811 114658952 + 2 NA intron (NM_001321908, intron 2 of 25) THE1D|LTR|ERVL-MaLR 174667 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 250-21 chr2 81590506 81590647 + 2 NA Intergenic Intergenic -123630 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 241-9 chr15 80234148 80234355 + 2 NA intron (NM_001352888, intron 1 of 2) intron (NM_001352888, intron 1 of 2) 17962 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 266-30 chr3 128519062 128519244 + 2 NA Intergenic Intergenic 11318 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 203-24 chr7 81742045 81742220 + 2 NA TTS (NM_001010931) TTS (NM_001010931) 27915 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 459.5-16 chr5 45402328 45402836 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 293798 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 499-20 chr6 38013098 38013569 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 193606 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 300-33 chr9 80887030 80887277 + 2 NA Intergenic Intergenic 802382 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 586-6 chr14 44910479 44910963 + 2 NA intron (NR_110050, intron 1 of 2) intron (NR_110050, intron 1 of 2) 1196 NR_110050 101927418 Hs.144809 NR_110050 ENSG00000258949 LOC101927418 - uncharacterized LOC101927418 ncRNA 179-21 chr7 55397928 55398093 + 2 NA intron (NM_018697, intron 2 of 8) intron (NM_018697, intron 2 of 8) 32562 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 379-22 chr2 84768476 84768682 + 2 NA intron (NM_001370, intron 64 of 76) L1MEg|LINE|L1 112505 NM_001307978 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 200-15 chr20 25478992 25479130 + 2 NA exon (NM_001318226, exon 16 of 23) exon (NM_001318226, exon 16 of 23) 71378 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 270-18 chr3 16909017 16909195 + 2 NA intron (NM_001144382, intron 1 of 5).2 intron (NM_001144382, intron 1 of 5).2 -23984 NM_015184 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 195.5-20 chr3 103375465 103375597 + 2 NA Intergenic Intergenic 148585 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 439.5-30 chr8 92635085 92635528 + 2 NA intron (NR_125827, intron 2 of 4) MER53|DNA|hAT 20188 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 510.5-10 chr5 152864363 152864837 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 107749 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 579-20 chr5 114116505 114116888 + 2 NA Intergenic Intergenic -245374 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 344-26 chr4 65447977 65448167 + 2 NA intron (NM_001281767, intron 5 of 16) L1MEd|LINE|L1 221416 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 656-7 chr20 52261374 52261959 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -69681 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 493-23 chr5 100758813 100759247 + 2 NA Intergenic Intergenic 57535 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 355-29 chr5 28981575 28981876 + 2 NA Intergenic L1M4|LINE|L1 54855 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 494-12 chr20 625961 626289 + 2 NA Intergenic L1ME5|LINE|L1 -15859 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 608-12 chr4 19534397 19534849 + 2 NA Intergenic Intergenic -717282 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 280-25 chr3 115225343 115225489 + 2 NA Intergenic Intergenic -78128 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 349-4 chr1 151613458 151613702 + 2 NA intron (NM_030918, intron 1 of 11) intron (NM_030918, intron 1 of 11) 1530 NM_030918 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 343-21 chr3 58597275 58597552 + 2 NA intron (NM_001282714, intron 1 of 4) intron (NM_001282714, intron 1 of 4) -9667 NR_134853 105377108 NR_134853 ENSG00000244383 FAM3D-AS1 lnc-KCTD6-3 FAM3D antisense RNA 1 ncRNA 431.5-9 chr15 92448935 92449527 + 2 NA intron (NM_001330416, intron 4 of 4) L1PA16|LINE|L1 22315 NR_126501 104613533 Hs.97584 NR_126501 ENSG00000259170 LOC104613533 - uncharacterized LOC104613533 ncRNA 404.5-23 chrX 100890080 100890337 + 2 NA Intergenic LTR82B|LTR|ERVL -15849 NM_007052 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 571.5-11 chr8 85492972 85493701 + 2 NA Intergenic Intergenic -28421 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 168 chr1 221187648 221187792 + 2 NA Intergenic L1ME3G|LINE|L1 148576 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 259-12 chr2 55533731 55533883 + 2 NA intron (NM_001282761, intron 5 of 10) intron (NM_001282761, intron 5 of 10) 14212 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 374-3 chr1 198960011 198960317 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -22735 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 400-23 chr5 15104263 15104617 + 2 NA Intergenic Intergenic 162120 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 304-24 chr3 37367313 37367590 + 2 NA TTS (NM_002078) TTS (NM_002078) -18818 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 427-20 chr3 60791074 60791319 + 2 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -173326 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 450.5-2 chr11 54976073 54976360 + 2 NA Intergenic ALR/Alpha|Satellite|centr 269384 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 508-9 chr16 75407427 75407722 + 2 NA intron (NM_006324, intron 4 of 6) AluJb|SINE|Alu 25929 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 344-31 chr8 28625301 28625556 + 2 NA Intergenic Intergenic 76036 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 513.5-7 chr2 47736298 47736714 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger -46576 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 262-6 chr10 52562991 52563200 + 2 NA intron (NR_155748, intron 1 of 2) L1ME1|LINE|L1 -92562 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 253.5-3 chr11 37739213 37739368 + 2 NA Intergenic Intergenic -199311 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 434-14 chr3 159633210 159633595 + 2 NA intron (NM_001197108, intron 1 of 6) HAL1|LINE|L1 135210 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 464-2 chr10 14754725 14755159 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 19955 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 610-9 chr2 203084902 203085265 + 2 NA intron (NM_001114132, intron 10 of 54) MamSINE1|SINE|tRNA-RTE 70204 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 314.5-10 chr12 52486524 52486730 + 2 NA TTS (NM_005554) TTS (NM_005554) 6630 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 519.5-15 chr5 21409972 21410281 + 2 NA Intergenic Intergenic -49354 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 309-14 chr17 59367463 59367630 + 2 NA intron (NM_001005404, intron 2 of 4) MER58A|DNA|hAT-Charlie 1463 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 461-19 chr4 32389636 32390086 + 2 NA Intergenic L1ME1|LINE|L1 38823 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 369-5 chr10 36780746 36781013 + 2 NA Intergenic Intergenic -344978 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 239-6 chr12 40029410 40029653 + 2 NA intron (NM_052885, intron 2 of 9) intron (NM_052885, intron 2 of 9) 76550 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 326-25 chr20 59505927 59506241 + 2 NA Intergenic MER101|LTR|ERV1 -71425 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 243.5-3 chr1 242204579 242204819 + 2 NA intron (NM_001320272, intron 6 of 10) MIRb|SINE|MIR -205601 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 316-24 chr21 22386117 22386394 + 2 NA Intergenic Intergenic 287638 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 666-13 chr7 145472706 145473303 + 2 NA Intergenic Intergenic -636951 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 215.5-9 chr10 110229650 110229787 + 2 NA intron (NM_001008541, intron 2 of 4) intron (NM_001008541, intron 2 of 4) 3722 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 233-21 chr4 58234700 58234847 + 2 NA Intergenic MIR|SINE|MIR 301555 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 618.5 chr10 6067837 6068253 + 2 NA Intergenic Intergenic -5675 NM_000417 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 525.5-17 chr8 118455963 118456337 + 2 NA intron (NM_001101676, intron 2 of 4) L2b|LINE|L2 -164851 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 640-7 chr4 85244878 85245249 + 2 NA Intergenic Intergenic -230087 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 234.5-18 chr2 184109195 184109403 + 2 NA Intergenic Intergenic -269676 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 306.5-36 chr7 20032831 20033059 + 2 NA intron (NR_110114, intron 2 of 5) intron (NR_110114, intron 2 of 5) 107481 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 188-8 chr15 46367785 46368046 + 2 NA Intergenic Intergenic 662720 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 648.5-4 chr4 104740845 104741461 + 2 NA Intergenic MIR|SINE|MIR -246259 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 217-2 chr11 27160573 27160711 + 2 NA intron (NR_125767, intron 2 of 4) MLT1H1|LTR|ERVL-MaLR 58126 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 220.5-16 chr2 4622981 4623164 + 2 NA Intergenic Intergenic 33150 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 323-22 chr3 30637574 30637826 + 2 NA intron (NM_001024847, intron 2 of 7) L1ME4b|LINE|L1 31099 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 382-22 chr2 53920769 53921020 + 2 NA exon (NM_014614, exon 18 of 47) exon (NM_014614, exon 18 of 47) 50099 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 337-17 chr2 208649344 208649549 + 2 NA intron (NR_136588, intron 2 of 5) intron (NR_136588, intron 2 of 5) 106804 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 363-34 chr8 100954273 100954684 + 2 NA Intergenic Intergenic -1096 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 319-22 chr2 100278944 100279225 + 2 NA 3' UTR (NM_198461, exon 12 of 12) 3' UTR (NM_198461, exon 12 of 12) 43649 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 128-4 chr18 4637680 4637814 + 2 NA Intergenic Intergenic -182440 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 465-12 chr10 91872750 91873108 + 2 NA Intergenic AluJb|SINE|Alu 36557 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 332-24 chr3 44279642 44280087 + 2 NA intron (NM_001145030, intron 8 of 19) L1MA4A|LINE|L1 37978 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 447-31 chr9 20365469 20365814 + 2 NA intron (NM_001286691, intron 6 of 10) intron (NM_001286691, intron 6 of 10) 45597 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 287-10 chr14 77268966 77269248 + 2 NA intron (NM_021257, intron 2 of 3) intron (NM_021257, intron 2 of 3) 2205 NM_021257 58157 Hs.274363 NM_021257 ENSG00000165553 NGB - neuroglobin protein-coding 553-10 chr5 117703840 117704314 + 2 NA Intergenic Intergenic -26284 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 414-36 chr6 105089094 105089555 + 2 NA Intergenic Intergenic 47022 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 255-15 chr20 59102213 59102388 + 2 NA Intergenic L1MC1|LINE|L1 -59454 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 218.5-2 chr10 31381707 31381824 + 2 NA intron (NM_001323638, intron 4 of 12) AluSz|SINE|Alu 17990 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 369-12 chr11 79417116 79417368 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 4984 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 392-26 chr3 123911696 123911949 + 2 NA Intergenic Intergenic -27490 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 212-29 chr8 106153804 106153982 + 2 NA Intergenic Intergenic -93390 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 234-18 chr3 46818724 46818941 + 2 NA Intergenic L1MEc|LINE|L1 -6258 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 287-3 chr1 88937728 88937957 + 2 NA intron (NM_001008661, intron 13 of 13) L1MC4|LINE|L1 -46275 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 323-19 chr2 100232922 100233152 + 2 NA intron (NR_103730, intron 1 of 2) intron (NR_103730, intron 1 of 2) 24783 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 333-3 chr11 80463749 80463996 + 2 NA Intergenic L1PREC2|LINE|L1 298931 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 141-8 chr6 158691342 158691449 + 2 NA intron (NM_001242394, intron 6 of 17) MER5A|DNA|hAT-Charlie 27992 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 206.5-22 chr2 98210290 98210412 + 2 NA intron (NR_144297, intron 12 of 18) intron (NR_144297, intron 12 of 18) 60818 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 551.5-4 chr2 38100124 38100689 + 2 NA Intergenic Intergenic -24225 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 341-17 chr2 81458410 81458741 + 2 NA Intergenic Intergenic 8371 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 409.5-26 chr5 154056747 154057025 + 2 NA 3' UTR (NM_005927, exon 3 of 3) 3' UTR (NM_005927, exon 3 of 3) 17919 NM_001242336 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 208.5-14 chr2 171690464 171690727 + 2 NA intron (NM_001271787, intron 2 of 15) intron (NM_001271787, intron 2 of 15) 2840 NM_001271787 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 430-10 chr13 51646500 51646903 + 2 NA intron (NM_052950, intron 1 of 11) intron (NM_052950, intron 1 of 11) 62239 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 536-12 chr3 116597474 116597849 + 2 NA Intergenic Intergenic 45188 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 314-30 chr4 124409657 124409849 + 2 NA Intergenic Intergenic 148681 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 523-28 chr8 58044451 58044892 + 2 NA intron (NM_147189, intron 3 of 4) intron (NM_147189, intron 3 of 4) 50148 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 538-12 chr4 88051512 88052155 + 2 NA intron (NR_156488, intron 6 of 13) intron (NR_156488, intron 6 of 13) 44198 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 264.5-11 chr14 53340053 53340207 + 2 NA Intergenic MIR3|SINE|MIR 186776 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 487.5-18 chr20 54278284 54278575 + 2 NA Intergenic Intergenic 70342 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 413-12 chr14 68833468 68833793 + 2 NA Intergenic L1MA4|LINE|L1 -37387 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 229-9 chr11 94874704 94874907 + 2 NA 3' UTR (NM_001301007, exon 12 of 12) 3' UTR (NM_001301007, exon 12 of 12) 98751 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 331-8 chr10 14493422 14493641 + 2 NA Intergenic L1M5|LINE|L1 39183 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 468-10 chr15 45399879 45400171 + 2 NA intron (NM_001321015, intron 1 of 11) AluSx1|SINE|Alu 2202 NM_001321015 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 297-10 chr17 69922428 69922662 + 2 NA Intergenic L1ME1|LINE|L1 -39162 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 291-29 chr8 52534237 52534642 + 2 NA 3' UTR (NM_207413, exon 5 of 5) 3' UTR (NM_207413, exon 5 of 5) 30991 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 640-12 chr6 72706456 72706800 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 76133 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 170-20 chr6 160671437 160671531 + 2 NA Intergenic L1PREC2|LINE|L1 -7225 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 724 chr10 36101824 36102289 + 2 NA Intergenic L1MCa|LINE|L1 323754 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 496-13 chr2 33874233 33874593 + 2 NA intron (NR_126403, intron 2 of 5) L1MD|LINE|L1 -146196 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 369-39 chr7 113066012 113066309 + 2 NA Intergenic Intergenic 20178 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 303-4 chr1 222003312 222003495 + 2 NA Intergenic Intergenic -24883 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 189-19 chr4 54115927 54116053 + 2 NA Intergenic L1PA15|LINE|L1 15827 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 460.5-8 chr14 70933403 70933825 + 2 NA intron (NM_014982, intron 1 of 35) MER58B|DNA|hAT-Charlie 26155 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 548-10 chr2 77720950 77721330 + 2 NA Intergenic Intergenic -194794 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 306-4 chr12 77237581 77237759 + 2 NA Intergenic Intergenic -172101 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 443.5-4 chr12 9765510 9765883 + 2 NA Intergenic Intergenic -4795 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 220.5-25 chr5 17178466 17178600 + 2 NA intron (NR_027253, intron 1 of 2) MER63A|DNA|hAT-Blackjack -22541 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 277-15 chr14 69891775 69891992 + 2 NA intron (NM_001034852, intron 1 of 11) MER53|DNA|hAT 12467 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 416.5-15 chr4 66574502 66574881 + 2 NA Intergenic Intergenic 297867 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 310-12 chr15 81989276 81989529 + 2 NA Intergenic Intergenic 56616 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 426-42 chr8 105128055 105128310 + 2 NA Intergenic MIRb|SINE|MIR -190256 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 571-14 chr3 133916976 133917638 + 2 NA Intergenic Intergenic 12505 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 347.5-10 chr16 67898402 67898582 + 2 NA intron (NM_006742, intron 1 of 2) AluJr|SINE|Alu 5238 NM_006742 5681 Hs.513683 NM_006742 ENSG00000159792 PSKH1 - protein serine kinase H1 protein-coding 533-23 chr5 3694942 3695288 + 2 NA Intergenic Intergenic 99283 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 378-21 chr5 127470669 127471022 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -46795 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 352.5-20 chr3 115404660 115404861 + 2 NA Intergenic Intergenic -218750 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 345.5 chr1 83923278 83923710 + 2 NA intron (NM_001350215, intron 9 of 19) intron (NM_001350215, intron 9 of 19) -62498 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 612.5-6 chr18 30146655 30147144 + 2 NA Intergenic Intergenic -152011 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 396-35 chr9 32682177 32682510 + 2 NA Intergenic L1MA1|LINE|L1 -46674 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 180-18 chr8 139511111 139511246 + 2 NA Intergenic Intergenic 191945 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 484-5 chr1 174498070 174498458 + 2 NA intron (NM_001366446, intron 13 of 25) (ATAT)n|Simple_repeat|Simple_repeat 50300 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 290-2 chr1 220375604 220375838 + 2 NA Intergenic MLT2D|LTR|ERVL -103268 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 257-11 chr14 54174475 54174671 + 2 NA Intergenic Intergenic -217682 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 658.5-4 chr14 42821793 42822131 + 2 NA Intergenic LTR40a|LTR|ERVL 1215106 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 465-13 chr10 106578719 106579075 + 2 NA 3' UTR (NM_001206571, exon 25 of 25) 3' UTR (NM_001206571, exon 25 of 25) 438732 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 300-4 chr1 174871457 174871643 + 2 NA intron (NM_001366446, intron 19 of 25) intron (NM_001366446, intron 19 of 25) -2836 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 253-37 chr9 87797284 87797532 + 2 NA Intergenic AluSp|SINE|Alu 24493 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 144-10 chr8 83301391 83301510 + 2 NA Intergenic Intergenic -102308 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 307-10 chr12 42266823 42267025 + 2 NA Intergenic MER52A|LTR|ERV1 -28556 NM_005748 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 186-10 chr2 68192110 68192204 + 2 NA intron (NM_000945, intron 2 of 5) intron (NM_000945, intron 2 of 5) 34269 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 452-15 chr2 79516867 79517187 + 2 NA intron (NM_001164883, intron 1 of 16) intron (NM_001164883, intron 1 of 16) 4093 NM_001282597 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 292-12 chr17 44448852 44449064 + 2 NA intron (NM_001304942, intron 2 of 6) intron (NM_001304942, intron 2 of 6) -12107 NM_001304943 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 254-27 chr3 121255755 121256005 + 2 NA intron (NM_001348343, intron 16 of 27) intron (NM_001348343, intron 16 of 27) 206240 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 504-4 chr10 32747499 32747953 + 2 NA intron (NM_001321115, intron 29 of 43) L1PA15|LINE|L1 153746 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 364-16 chr16 66554794 66555042 + 2 NA intron (NM_001202509, intron 1 of 2) L2a|LINE|L2 2342 NM_001204098 100529251 Hs.698621 NM_001202509 ENSG00000254788 CKLF-CMTM1 - CKLF-CMTM1 readthrough protein-coding 249-14 chr2 23496252 23496391 + 2 NA intron (NM_052920, intron 2 of 13) L1ME3F|LINE|L1 111142 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 385.5-7 chr12 38027528 38027799 + 2 NA Intergenic ALR/Alpha|Satellite|centr -289111 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 120-4 chr2 89840476 89840545 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202603 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 225-31 chr6 149009497 149009637 + 2 NA intron (NM_005715, intron 5 of 7) (AC)n|Simple_repeat|Simple_repeat 23094 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 536.5-4 chr10 55980419 55980877 + 2 NA Intergenic Intergenic -352706 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 227.5-18 chr4 72107015 72107143 + 2 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 67947 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 359-9 chr10 75805483 75805730 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 22845 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 212-20 chr4 42026807 42026999 + 2 NA intron (NM_006345, intron 6 of 17) intron (NM_006345, intron 6 of 17) 36373 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 559.5-4 chr12 103344783 103345085 + 2 NA intron (NM_001099336, intron 4 of 5) MIR3|SINE|MIR 151034 NR_103526 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 245-22 chr2 122512149 122512284 + 2 NA Intergenic Intergenic 561265 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 485-12 chr3 76904657 76904956 + 2 NA Intergenic Intergenic -135293 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 694-12 chr7 26718307 26718933 + 2 NA intron (NM_003930, intron 9 of 12) AluSc|SINE|Alu 80749 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 575.5-7 chr4 62173359 62173738 + 2 NA Intergenic L2a|LINE|L2 -11783 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 293-19 chr3 169405632 169405856 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -42123 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 349-30 chr5 120007701 120007948 + 2 NA Intergenic L3b|LINE|CR1 378265 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 497-7 chr18 43316979 43317371 + 2 NA Intergenic Intergenic -39685 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 538.5-13 chr3 125446272 125446723 + 2 NA TTS (NR_073435) TTS (NR_073435) -71143 NM_001348430 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 642-16 chr8 54084320 54084725 + 2 NA intron (NM_001279356, intron 2 of 7) AluSz|SINE|Alu 17032 NM_001279360 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 219-26 chr5 13197 13355 + 2 NA Intergenic TAR1|Satellite|telo -78892 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 713-3 chr21 30167222 30167739 + 2 NA promoter-TSS (NM_012131) promoter-TSS (NM_012131) -675 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 219.5-2 chr1 156942389 156942545 + 2 NA intron (NM_014784, intron 32 of 39) intron (NM_014784, intron 32 of 39) -6223 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 609-20 chr8 16309616 16310044 + 2 NA Intergenic Intergenic -117039 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 291.5-12 chr2 129494674 129494867 + 2 NA Intergenic L1MA9|LINE|L1 -220879 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 368-2 chr1 233683297 233683647 + 2 NA Intergenic LTR7|LTR|ERV1 59320 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 222-2 chr10 5774925 5775097 + 2 NA intron (NM_001494, intron 6 of 10) intron (NM_001494, intron 6 of 10) 38423 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 241-10 chr16 71721700 71721832 + 2 NA intron (NM_015020, intron 1 of 18) intron (NM_015020, intron 1 of 18) 2935 NM_015020 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 274-2 chr1 147593645 147593824 + 2 NA intron (NM_004326, intron 1 of 9) L2c|LINE|L2 52233 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 194-8 chr2 119509131 119509268 + 2 NA intron (NM_002980, intron 1 of 12) intron (NM_002980, intron 1 of 12) 15253 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 744-6 chr15 60698738 60699300 + 2 NA intron (NM_134261, intron 1 of 10) L1ME3G|LINE|L1 17450 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 307-9 chr12 40031451 40031716 + 2 NA intron (NM_052885, intron 2 of 9) MIRb|SINE|MIR 74498 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 812-4 chr19 1638083 1638588 + 2 NA intron (NM_001136139, intron 3 of 19) intron (NM_001136139, intron 3 of 19) 14280 NM_001351778 6929 Hs.371282 NM_003200 ENSG00000071564 TCF3 AGM8|E2A|E47|ITF1|TCF-3|VDIR|bHLHb21|p75 transcription factor 3 protein-coding 333.5-10 chr2 112945156 112945462 + 2 NA Intergenic MER33|DNA|hAT-Charlie 30116 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 452-10 chr15 95768563 95768997 + 2 NA Intergenic L1MEc|LINE|L1 335687 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 185.5-27 chr5 13153888 13154069 + 2 NA Intergenic Intergenic -121092 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 585-5 chr18 68156738 68157219 + 2 NA Intergenic L1MA5A|LINE|L1 -342156 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 388-20 chr2 127136768 127137153 + 2 NA Intergenic Intergenic -29806 NM_139351 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 448.5-8 chr16 7076494 7076794 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -256201 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 367-4 chr1 103409105 103409385 + 2 NA Intergenic Intergenic 116266 NM_001347930 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 457-17 chr3 89256743 89257095 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 149298 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 368.5-28 chr7 53280557 53280759 + 2 NA Intergenic Intergenic 245025 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 584.5-12 chr9 111462359 111462665 + 2 NA intron (NM_001363756, intron 1 of 48) L1M5|LINE|L1 21050 NM_001364931 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 305.5-11 chr17 67568726 67568959 + 2 NA intron (NM_181671, intron 4 of 9) intron (NM_181671, intron 4 of 9) -97257 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 185.5-6 chr13 42679454 42679598 + 2 NA Intergenic Intergenic -102024 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 251-17 chr2 53147814 53148013 + 2 NA Intergenic Intergenic -445298 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 624-2 chr11 7070644 7071002 + 2 NA intron (NM_176822, intron 11 of 11) MIR|SINE|MIR -18175 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 463.5-26 chr8 123137748 123138045 + 2 NA intron (NM_001363149, intron 17 of 21) MER77|LTR|ERVL -41151 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 532 chr1 190895421 190895868 + 2 NA Intergenic Intergenic 270754 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 240.5-17 chr5 38235829 38235969 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -22660 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 436.5-13 chr6 120611249 120611497 + 2 NA Intergenic Intergenic 596194 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 417-8 chr10 116831384 116831697 + 2 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) -3972 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 455-27 chr6 39961980 39962336 + 2 NA Intergenic MamRep1151|LTR?|LTR? -27696 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 596-13 chr5 103872990 103873323 + 2 NA Intergenic Intergenic -310367 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 590-2 chr11 83119386 83119845 + 2 NA Intergenic AluJr|SINE|Alu -37516 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 321.5-34 chr9 106104499 106104670 + 2 NA Intergenic Intergenic 410043 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 276.5-40 chr9 138015046 138015261 + 2 NA intron (NM_001243812, intron 18 of 45) intron (NM_001243812, intron 18 of 45) 29918 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 341-10 chr13 33322385 33322578 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) 12785 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 465-9 chr10 81106563 81106839 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 456904 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 264-2 chr1 154990715 154991083 + 2 NA intron (NM_201398, intron 6 of 7) L1MB7|LINE|L1 -2687 NM_018655 55891 Hs.272399 NM_018655 ENSG00000163352 LENEP LEP503 lens epithelial protein protein-coding 500-6 chr16 82550456 82550800 + 2 NA Intergenic Intergenic -76341 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 365.5-6 chr12 27500524 27500726 + 2 NA intron (NM_001145010, intron 8 of 8) intron (NM_001145010, intron 8 of 8) -23581 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 407-16 chr16 6099153 6099453 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 79600 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 343.5-9 chr11 114285228 114285455 + 2 NA Intergenic Intergenic -10472 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 426 chr1 45195563 45195817 + 2 NA intron (NM_020883, intron 1 of 13) Tigger10|DNA|TcMar-Tigger 10915 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 265-9 chr13 103488860 103489036 + 2 NA Intergenic Intergenic 63748 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 520.5-21 chr8 83345616 83345965 + 2 NA Intergenic Intergenic -57968 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 522.5-7 chr2 191698070 191698695 + 2 NA intron (NR_131917, intron 2 of 2) L1MC5a|LINE|L1 8201 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 336-3 chr1 200742849 200743232 + 2 NA intron (NM_001297707, intron 1 of 17) intron (NM_001297707, intron 1 of 17) 3468 NM_203459 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 501-22 chr7 66803961 66804339 + 2 NA intron (NR_160287, intron 8 of 9) AluJo|SINE|Alu 40676 NR_003934 729156 Hs.709878 NR_003934 ENSG00000230583 GTF2IRD1P1 - GTF2I repeat domain containing 1 pseudogene 1 pseudo 262-32 chr9 86334034 86334336 + 2 NA intron (NM_001185074, intron 6 of 19) L1MCb|LINE|L1 20225 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 298-34 chr8 144076395 144076571 + 2 NA Intergenic Intergenic -2189 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 335-38 chr3 8859547 8859760 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -90039 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 251-2 chr1 111533955 111534159 + 2 NA intron (NM_001081976, intron 1 of 5) MIR|SINE|MIR -7952 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 377.5-13 chr3 35209113 35209457 + 2 NA intron (NR_110817, intron 2 of 3) L1MDa|LINE|L1 184738 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 589-9 chr22 42921627 42922004 + 2 NA intron (NM_001184970, intron 1 of 10) AluSx1|SINE|Alu 25226 NM_007229 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 405-18 chr3 98451987 98452372 + 2 NA Intergenic Intergenic -17301 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 348-19 chr19 37227376 37227689 + 2 NA intron (NM_152604, intron 1 of 4) LTR13|LTR|ERVK 1068 NM_152604 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 180.5-21 chr8 128229918 128230083 + 2 NA Intergenic HAL1b|LINE|L1 79884 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 260-17 chr2 187506844 187507022 + 2 NA intron (NM_006287, intron 1 of 7) L1PA3|LINE|L1 47502 NM_001329241 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 250-2 chr1 170972891 170973056 + 2 NA intron (NM_001163629, intron 8 of 21) L1ME1|LINE|L1 37439 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 295-33 chr3 194086197 194086558 + 2 NA Intergenic Intergenic -15407 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 454-12 chr19 18183982 18184391 + 2 NA Intergenic AluSx|SINE|Alu -9032 NM_032683 84769 Hs.515254 NM_032683 ENSG00000254858 MPV17L2 FKSG24 MPV17 mitochondrial inner membrane protein like 2 protein-coding 254-20 chr22 21849928 21850114 + 2 NA intron (NM_002745, intron 1 of 8) L1ME3B|LINE|L1 17659 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 287-26 chr3 106263998 106264144 + 2 NA Intergenic Intergenic -394670 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 478.5-22 chr6 153948306 153948601 + 2 NA Intergenic Intergenic -62043 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 296-30 chr6 149142813 149143016 + 2 NA Intergenic L1MEd|LINE|L1 -75010 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 347-7 chr13 113088115 113088429 + 2 NA intron (NM_001366646, intron 21 of 27) intron (NM_001366646, intron 21 of 27) -17516 NM_001267554 2155 Hs.36989 NM_000131 ENSG00000057593 F7 SPCA coagulation factor VII protein-coding 274-31 chr6 54549425 54549621 + 2 NA Intergenic L2a|LINE|L2 241082 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 515-17 chr5 34943090 34943502 + 2 NA intron (NM_194283, intron 7 of 12) L1MC4|LINE|L1 13703 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 565-7 chr20 53141302 53141699 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -43783 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 410-24 chr5 12876177 12876444 + 2 NA Intergenic AluJb|SINE|Alu 156576 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 507-20 chr3 100021249 100021577 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -57015 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 428-2 chr1 151454683 151454934 + 2 NA intron (NM_001194938, intron 1 of 17) intron (NM_001194938, intron 1 of 17) 4686 NM_145796 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 513-7 chr10 97652949 97653433 + 2 NA intron (NM_018425, intron 2 of 8) intron (NM_018425, intron 2 of 8) 12505 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 389-24 chr20 35767428 35767802 + 2 NA Intergenic AluSx|SINE|Alu -4400 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 249.5-34 chr7 19463578 19463815 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 241740 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 270-37 chr9 28581564 28581861 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 137593 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 420-17 chr2 6045149 6045718 + 2 NA Intergenic L1PREC2|LINE|L1 63455 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 401-13 chr13 54425557 54425847 + 2 NA Intergenic Intergenic -113654 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 346.5-17 chr20 12470588 12471027 + 2 NA Intergenic LTR16|LTR|ERVL 466156 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 390-29 chr7 91742895 91743218 + 2 NA Intergenic L1MA2|LINE|L1 137646 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 240-39 chr6 109170950 109171177 + 2 NA intron (NR_152435, intron 1 of 45) intron (NR_152435, intron 1 of 45) 5232 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 359-34 chr5 25395395 25395751 + 2 NA Intergenic Intergenic 204620 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 238-3 chr1 40039091 40039347 + 2 NA promoter-TSS (NM_001350479) promoter-TSS (NM_001350479) -846 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 247-4 chr11 27408814 27409029 + 2 NA intron (NM_001346432, intron 1 of 16) intron (NM_001346432, intron 1 of 16) -45673 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 543-20 chr8 129317399 129317801 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -76360 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 367-27 chr5 59330935 59331158 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 25924 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 629.5-2 chr10 116337638 116338020 + 2 NA intron (NM_198515, intron 3 of 8) intron (NM_198515, intron 3 of 8) 13381 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 390.5-18 chr20 15883824 15884062 + 2 NA intron (NM_001351663, intron 9 of 17) MIRb|SINE|MIR 39371 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 315-39 chr8 26642915 26643156 + 2 NA intron (NM_001244604, intron 8 of 13) intron (NM_001244604, intron 8 of 13) 64630 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 401-22 chr2 217415521 217415860 + 2 NA intron (NR_026597, intron 8 of 12) L1ME1|LINE|L1 132957 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 196 chr1 11340114 11340253 + 2 NA Intergenic Intergenic 66985 NM_001330349 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 472-7 chr17 64490985 64491421 + 2 NA intron (NM_007215, intron 3 of 7) FAM|SINE|Alu 5851 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 596-8 chr22 28777780 28778210 + 2 NA intron (NM_001284264, intron 2 of 3) AluSc8|SINE|Alu 4858 NM_001284265 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 183-4 chr10 67030488 67030579 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 18267 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 345-7 chr11 129962280 129962573 + 2 NA intron (NM_199437, intron 1 of 20) intron (NM_199437, intron 1 of 20) -6396 NM_001367895 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7|TRIS PR/SET domain 10 protein-coding 556.5-21 chr8 129365188 129365647 + 2 NA intron (NR_130920, intron 3 of 3) L2c|LINE|L2 118725 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 313-7 chr11 129246576 129246791 + 2 NA intron (NR_145484, intron 1 of 1) intron (NR_145484, intron 1 of 1) 36481 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 570-17 chr4 48356349 48356681 + 2 NA intron (NM_020846, intron 1 of 7) MamRTE1|LINE|RTE-BovB 14986 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 322-10 chr17 61982059 61982338 + 2 NA exon (NM_005121, exon 16 of 30) exon (NM_005121, exon 16 of 30) -54216 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 398-25 chr3 187397786 187398151 + 2 NA Intergenic L1MB8|LINE|L1 29583 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 356-17 chr18 20974133 20974407 + 2 NA intron (NM_005406, intron 22 of 32) L2a|LINE|L2 137543 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 452-2 chr1 151976588 151976850 + 2 NA Intergenic Intergenic 17140 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 222.5-3 chr11 44455990 44456254 + 2 NA Intergenic MER113|DNA|hAT-Charlie -109541 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 219.5-6 chr11 86437352 86437577 + 2 NA Intergenic L1M4|LINE|L1 62577 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 304-25 chr3 70828665 70828911 + 2 NA Intergenic Intergenic 236136 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 742-4 chr5 76214000 76214519 + 2 NA intron (NM_014979, intron 4 of 12) L1MA9|LINE|L1 130876 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 530-6 chr1 234961712 234962056 + 2 NA intron (NR_125945, intron 1 of 3) intron (NR_125945, intron 1 of 3) 2115 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 470-21 chr2 227688548 227688899 + 2 NA intron (NM_001371411, intron 4 of 5) L1M1|LINE|L1 17933 NM_001371412 257-45 chr8 67232301 67232514 + 2 NA intron (NM_006421, intron 23 of 38) intron (NM_006421, intron 23 of 38) 111374 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 440.5-15 chr2 239483067 239483346 + 2 NA Intergenic Intergenic 81458 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 581-11 chr3 10765104 10765459 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -1072 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 219-7 chr11 38048173 38048322 + 2 NA Intergenic Intergenic 109646 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 177.5-10 chr12 22689370 22689532 + 2 NA 3' UTR (NM_018638, exon 8 of 8) 3' UTR (NM_018638, exon 8 of 8) 64280 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 317-16 chr21 27019878 27020047 + 2 NA Intergenic L2a|LINE|L2 -52874 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 459-25 chr5 42407199 42407480 + 2 NA Intergenic Intergenic -16100 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 582-5 chr12 759000 759362 + 2 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 6258 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 304-6 chr12 8685208 8685397 + 2 NA intron (NR_123740, intron 1 of 8) L1MC|LINE|L1 3625 NM_001352267 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 838 chr1 103326212 103326687 + 2 NA Intergenic L1MA1|LINE|L1 199062 NM_001347930 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 321.5-24 chr4 76069652 76069877 + 2 NA intron (NM_001130017, intron 1 of 9) L1MB7|LINE|L1 -4931 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 339-16 chr2 11163680 11163851 + 2 NA intron (NM_001282712, intron 3 of 3) intron (NM_001282712, intron 3 of 3) 8298 NM_001282712 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 276-9 chr1 199150153 199150293 + 2 NA intron (NR_147896, intron 1 of 3) intron (NR_147896, intron 1 of 3) 1625 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 290-27 chr5 156911320 156911549 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 51792 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 213.5-34 chr7 110878283 110878421 + 2 NA intron (NM_001350963, intron 5 of 5) Zaphod|DNA|hAT-Tip100 -212654 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 471.5-12 chr2 124257340 124257747 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 232256 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 214.5-34 chr8 118395130 118395266 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -225803 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 519.5-17 chr7 30183518 30183985 + 2 NA Intergenic Intergenic 48765 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 375-21 chr3 146998671 146998927 + 2 NA Intergenic Intergenic 76876 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 363.5 chr10 83540504 83540904 + 2 NA Intergenic Intergenic 136385 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 256.5-20 chr2 163647113 163647298 + 2 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 88803 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 404.5-13 chr2 134273424 134273839 + 2 NA intron (NM_001371457, intron 3 of 16) (TG)n|Simple_repeat|Simple_repeat 19559 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 486-41 chr8 134336394 134336858 + 2 NA Intergenic Intergenic -261445 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 216-9 chr17 35237917 35238152 + 2 NA Intergenic Intergenic -5038 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 580.5-6 chr4 148416092 148416538 + 2 NA intron (NM_000901, intron 2 of 8) MIR|SINE|MIR 26099 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 516-13 chr16 75239046 75239388 + 2 NA promoter-TSS (NM_001170721) promoter-TSS (NM_001170721) -557 NM_001170721 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 259.5-36 chr5 79910234 79910482 + 2 NA Intergenic MLT2D|LTR|ERVL -26221 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 264-22 chr5 168781385 168781538 + 2 NA intron (NM_003062, intron 12 of 35) intron (NM_003062, intron 12 of 35) -13206 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 382-18 chr17 40242933 40243186 + 2 NA intron (NM_133264, intron 1 of 7) intron (NM_133264, intron 1 of 7) 23755 NM_133264 147179 Hs.421622 NM_133264 ENSG00000171475 WIPF2 WICH|WIRE WAS/WASL interacting protein family member 2 protein-coding 547.5-9 chr4 96548748 96549048 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 238195 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 350-7 chr14 50319426 50319620 + 2 NA intron (NM_001370605, intron 2 of 5) MIR3|SINE|MIR 7199 NM_015684 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 440-17 chr2 42183703 42183984 + 2 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -13612 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 280-30 chr6 8304408 8304669 + 2 NA Intergenic Intergenic 131007 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 294-2 chr1 62106833 62107012 + 2 NA intron (NM_001350145, intron 33 of 43) MamGypLTR1a|LTR|Gypsy -28066 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 324-18 chr18 6493398 6493630 + 2 NA Intergenic Intergenic -17902 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 300-2 chr1 60258587 60258765 + 2 NA Intergenic Intergenic -184906 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 481.5-12 chr4 9837254 9837514 + 2 NA intron (NM_001001290, intron 11 of 12) intron (NM_001001290, intron 11 of 12) 55750 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 705-3 chr16 87575489 87576147 + 2 NA Intergenic Intergenic -26017 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 421-18 chr2 109731198 109731559 + 2 NA Intergenic Intergenic -61380 NM_001037866 729540 Hs.535589 NM_001037866 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2 like and GRIP domain containing 6 protein-coding 367-21 chr22 36724554 36724778 + 2 NA intron (NR_134623, intron 2 of 3) AluJr|SINE|Alu 20790 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 521.5-2 chr13 53842850 53843126 + 2 NA intron (NR_047488, intron 3 of 5) intron (NR_047488, intron 3 of 5) 27569 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 309-20 chr2 110836807 110836999 + 2 NA intron (NM_001371254, intron 9 of 18) MER102b|DNA|hAT-Charlie 104330 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 270.5-2 chr1 100360756 100360916 + 2 NA intron (NM_001319212, intron 2 of 13) intron (NM_001319212, intron 2 of 13) 8330 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 243-21 chr20 21923219 21923378 + 2 NA Intergenic MIR|SINE|MIR -130792 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 283-4 chr1 199170860 199171075 + 2 NA intron (NR_147896, intron 3 of 3) L2|LINE|L2 22369 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 298-16 chr3 188554962 188555346 + 2 NA intron (NM_001167672, intron 4 of 9) L2a|LINE|L2 13512 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 218-36 chr8 79579256 79579472 + 2 NA Intergenic MIRb|SINE|MIR -31753 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 310-3 chr1 67094125 67094371 + 2 NA intron (NM_001276352, intron 8 of 8) intron (NM_001276352, intron 8 of 8) -40100 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 194-3 chr13 19700658 19700826 + 2 NA intron (NR_156729, intron 6 of 8) intron (NR_156729, intron 6 of 8) 67083 NM_017520 54737 Hs.269654 NM_017520 ENSG00000196199 MPHOSPH8 HSMPP8|TWA3|mpp8 M-phase phosphoprotein 8 protein-coding 422-2 chr10 54101873 54102275 + 2 NA intron (NM_001354411, intron 16 of 34) L1M4b|LINE|L1 -384156 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 256-7 chr14 27067361 27067590 + 2 NA Intergenic Intergenic 158833 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 414-12 chr15 63439006 63439377 + 2 NA Intergenic Intergenic 48961 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 602-14 chr20 25053731 25054223 + 2 NA intron (NM_032501, intron 1 of 13) intron (NM_032501, intron 1 of 13) 4162 NM_032501 84532 Hs.529353 NM_032501 ENSG00000154930 ACSS1 ACAS2L|ACECS1|AceCS2L acyl-CoA synthetase short chain family member 1 protein-coding 455-2 chr1 85836570 85837026 + 2 NA intron (NM_152890, intron 43 of 59) intron (NM_152890, intron 43 of 59) -128365 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 410-33 chr8 85101745 85102072 + 2 NA Intergenic L1MA4A|LINE|L1 -5330 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 573-20 chr9 25955353 25955691 + 2 NA Intergenic Intergenic -111153 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 696.5-6 chr8 10070394 10070865 + 2 NA intron (NM_001135670, intron 1 of 4) L1MD1|LINE|L1 16337 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 630-12 chr2 5560200 5560681 + 2 NA Intergenic Intergenic 130678 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 283-18 chr2 7315402 7315656 + 2 NA Intergenic L1M5|LINE|L1 -105732 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 384-26 chr7 32251375 32251676 + 2 NA intron (NM_001322059, intron 1 of 17) L2|LINE|L2 47803 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 316.5-25 chr7 20170589 20170921 + 2 NA 5' UTR (NM_182762, exon 2 of 7) 5' UTR (NM_182762, exon 2 of 7) 28839 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 550-4 chr10 65609963 65610341 + 2 NA intron (NR_120647, intron 2 of 5) L1MB8|LINE|L1 38727 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 322-12 chr2 24296494 24296749 + 2 NA intron (NM_001348182, intron 13 of 38) MLT1B|LTR|ERVL-MaLR 63915 NM_001348185 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 355-4 chr10 63047782 63048044 + 2 NA Intergenic L1M4|LINE|L1 -85334 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 713.5-2 chr15 64496717 64497139 + 2 NA Intergenic AluJb|SINE|Alu -2492 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 414-8 chr12 30624159 30624590 + 2 NA Intergenic Intergenic 52870 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 283.5-30 chr5 55610667 55610942 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie -75726 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 264.5-12 chr14 72862906 72863049 + 2 NA intron (NM_001280542, intron 1 of 10) L2a|LINE|L2 29672 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 435-38 chr8 113758820 113759193 + 2 NA Intergenic L1MEg|LINE|L1 -322067 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 157-12 chr4 71194169 71194300 + 2 NA intron (NM_001098484, intron 1 of 25) MIRc|SINE|MIR 6948 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 318-18 chr19 30786363 30786640 + 2 NA Intergenic L2a|LINE|L2 -381009 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 429.5-11 chr2 52974377 52974682 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -271914 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 728-5 chr2 88303267 88303947 + 2 NA Intergenic L2a|LINE|L2 130468 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 332.5-10 chr3 89975314 89975603 + 2 NA Intergenic Intergenic 867837 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 294-37 chr7 151399739 151399892 + 2 NA intron (NM_198285, intron 2 of 5) intron (NM_198285, intron 2 of 5) -9346 NR_034012 100131176 Hs.659231 NR_034012 ENSG00000243836 WDR86-AS1 - WDR86 antisense RNA 1 ncRNA 261.5-18 chr19 28594675 28594955 + 2 NA intron (NR_110759, intron 5 of 9) L2a|LINE|L2 -11873 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 852.5-3 chr7 37303102 37303641 + 2 NA intron (NM_001206480, intron 4 of 21) intron (NM_001206480, intron 4 of 21) 50297 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 270.5-19 chr22 32290249 32290399 + 2 NA Intergenic L1PA8|LINE|L1 -34977 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 416.5-10 chr14 39781561 39781931 + 2 NA Intergenic L1PBa1|LINE|L1 -349246 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 457-7 chr17 19492144 19492603 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -41481 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 413.5-7 chr13 38866168 38866616 + 2 NA intron (NM_207361, intron 16 of 23) AluSx1|SINE|Alu -38801 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 287.5-22 chr4 79374788 79375049 + 2 NA Intergenic L1ME3A|LINE|L1 33310 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 552-6 chr12 106660999 106661336 + 2 NA intron (NM_001206691, intron 4 of 17) MIRb|SINE|MIR 23533 NR_038912 100505978 Hs.662583 NR_038912 ENSG00000257711 LOC100505978 - uncharacterized LOC100505978 ncRNA 247-31 chr9 29276681 29276899 + 2 NA Intergenic Intergenic -63189 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 750.5-2 chr10 89415894 89416455 + 2 NA intron (NM_012420, intron 1 of 1) AluSx3|SINE|Alu 1606 NM_012420 24138 Hs.252839 NM_012420 ENSG00000152778 IFIT5 ISG58|P58|RI58 interferon induced protein with tetratricopeptide repeats 5 protein-coding 345.5-6 chr10 82841473 82841838 + 2 NA intron (NR_163252, intron 3 of 8) MLT2C1|LTR|ERVL -608735 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 384-25 chr5 63417520 63417921 + 2 NA Intergenic Intergenic 544572 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 369.5-7 chr14 47430570 47430754 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -87416 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 243-18 chr2 51909977 51910215 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -460552 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 497-17 chr8 117704378 117704996 + 2 NA Intergenic Intergenic 183974 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 220-16 chr2 19136932 19137116 + 2 NA Intergenic AluSx1|SINE|Alu -110053 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 436.5-17 chr7 75668619 75668882 + 2 NA intron (NM_005338, intron 1 of 30) L2|LINE|L2 70191 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 284-2 chr1 156213804 156213955 + 2 NA intron (NM_001199664, intron 1 of 4) intron (NM_001199664, intron 1 of 4) 891 NM_001199664 100527963 Hs.530479 NM_001199661 ENSG00000260238 PMF1-BGLAP PMF-1|PMF1 PMF1-BGLAP readthrough protein-coding 167.5-3 chr11 112056210 112056325 + 2 NA intron (NM_001931, intron 11 of 13) L1MB7|LINE|L1 17904 NM_138789 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 157-14 chr5 65635708 65635801 + 2 NA intron (NM_001365342, intron 2 of 10) intron (NM_001365342, intron 2 of 10) 10727 NM_024941 80006 Hs.591760 NM_024941 ENSG00000113597 TRAPPC13 C5orf44|SHLD3 trafficking protein particle complex 13 protein-coding 437-26 chr2 67263798 67264056 + 2 NA intron (NR_110564, intron 1 of 4) L1MA10|LINE|L1 -48608 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 278-2 chr1 75774942 75775105 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -11171 NR_073562 5876 Hs.78948 NM_004582 ENSG00000137955 RABGGTB GGTB Rab geranylgeranyltransferase subunit beta protein-coding 295.5-26 chr5 68047576 68047734 + 2 NA Intergenic L1PA16|LINE|L1 -142221 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 340.5-32 chr9 6052380 6052736 + 2 NA Intergenic Intergenic -36934 NM_001243202 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 222-15 chr2 119231405 119231677 + 2 NA intron (NM_182915, intron 2 of 5) intron (NM_182915, intron 2 of 5) 7707 NM_138637 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 318-8 chr12 15169124 15169377 + 2 NA intron (NM_032918, intron 2 of 4) MLT2B1|LTR|ERVL 17327 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 392-29 chr6 70988806 70989253 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -31969 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 571-16 chr4 158812745 158813105 + 2 NA intron (NM_001366843, intron 1 of 17) L1MC1|LINE|L1 7086 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 338-10 chr16 8325389 8325626 + 2 NA Intergenic Intergenic 264331 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 302.5-32 chr4 74068118 74068348 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -12834 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 388-21 chr2 180822338 180822605 + 2 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 130367 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 264-11 chr17 66260821 66261086 + 2 NA Intergenic AluJr|SINE|Alu -31538 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 435.5-15 chr5 83881674 83882245 + 2 NA Intergenic L1ME4a|LINE|L1 -161104 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 194-2 chr11 109110503 109110751 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -311563 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 283-37 chr5 23224401 23224640 + 2 NA Intergenic MIR|SINE|MIR -283089 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 383-33 chr6 51891742 51892181 + 2 NA intron (NM_138694, intron 43 of 66) intron (NM_138694, intron 43 of 66) 195652 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 309-21 chr2 212084165 212084438 + 2 NA intron (NM_001042599, intron 2 of 26) L3b|LINE|CR1 342059 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 278-3 chr1 88249529 88249768 + 2 NA Intergenic L3b|LINE|CR1 -434496 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 617-10 chr7 27744498 27745154 + 2 NA intron (NM_001362794, intron 1 of 16) intron (NM_001362794, intron 1 of 16) 4731 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 391-15 chr20 57422838 57423187 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -29956 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 186-14 chr2 216574452 216574560 + 2 NA Intergenic MIRb|SINE|MIR 32432 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 533-16 chr20 47745769 47746218 + 2 NA intron (NM_198596, intron 2 of 20) MER102a|DNA|hAT-Charlie 40071 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 499.5-9 chr2 214591165 214591461 + 2 NA Intergenic Tigger12c|DNA|TcMar-Tigger 81131 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 319-13 chr16 86631062 86631248 + 2 NA Intergenic Intergenic 52646 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 486-33 chr4 46923333 46923731 + 2 NA 3' UTR (NM_001204266, exon 9 of 9) 3' UTR (NM_001204266, exon 9 of 9) -14287 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 492-24 chr3 22497018 22497365 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 540052 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 316.5-12 chr2 35190129 35190344 + 2 NA Intergenic Intergenic -281169 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 487-32 chr6 104317059 104317463 + 2 NA Intergenic Intergenic 542285 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 400-12 chr16 68637200 68637495 + 2 NA Intergenic MIR|SINE|MIR -7963 NM_001793 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 245.5-23 chr4 35008557 35008942 + 2 NA Intergenic L1ME1|LINE|L1 -739002 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 160.5-17 chr4 40965218 40965328 + 2 NA intron (NM_004307, intron 6 of 17) L1ME5|LINE|L1 -108081 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 378-11 chr15 70424000 70424315 + 2 NA Intergenic Intergenic 81771 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 316.5-21 chr5 23423952 23424165 + 2 NA Intergenic HERVL18-int|LTR|ERVL -83551 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 333-6 chr14 64013655 64013918 + 2 NA intron (NM_015180, intron 32 of 114) (TTAATAT)n|Simple_repeat|Simple_repeat 81339 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 509-19 chr7 100386930 100387248 + 2 NA intron (NM_178273, intron 2 of 4) MER85|DNA|PiggyBac 13602 NM_178273 29992 Hs.444407 NM_013439 ENSG00000085514 PILRA FDF03 paired immunoglobin like type 2 receptor alpha protein-coding 304-37 chr8 86861684 86861983 + 2 NA Intergenic Intergenic -4582 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 430-27 chr5 33642803 33643143 + 2 NA intron (NM_001324512, intron 10 of 21) intron (NM_001324512, intron 10 of 21) 202197 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 375-30 chr6 129298367 129298611 + 2 NA intron (NM_000426, intron 21 of 64) intron (NM_000426, intron 21 of 64) 411688 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 259-25 chr6 120413603 120413759 + 2 NA Intergenic Intergenic 398502 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 278-15 chr2 29778513 29778659 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 143000 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 417.5-14 chr3 147867979 147868405 + 2 NA Intergenic Intergenic -209967 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 427.5-15 chr2 100604198 100604671 + 2 NA intron (NR_146956, intron 1 of 2) intron (NR_146956, intron 1 of 2) 695 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 242.5-39 chr8 141185533 141185724 + 2 NA intron (NM_001362798, intron 18 of 21) AluJb|SINE|Alu 42946 NM_001080431 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 233-14 chr2 14219051 14219167 + 2 NA Intergenic Intergenic 181849 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 470-38 chr8 86517181 86517490 + 2 NA intron (NM_003909, intron 2 of 16) intron (NM_003909, intron 2 of 16) 2900 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 315.5-10 chr14 62842529 62842770 + 2 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 202809 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 279-31 chr6 21383047 21383290 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 128724 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 284-29 chr4 140096877 140097034 + 2 NA intron (NM_018717, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger -31060 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 260-27 chr5 11173323 11173538 + 2 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) -412196 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 335-20 chr18 25870769 25870992 + 2 NA Intergenic Intergenic 219733 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 579-10 chr2 62906855 62907180 + 2 NA intron (NM_001142615, intron 10 of 22) L1MD1|LINE|L1 140694 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 159.5-28 chr7 54928752 54928878 + 2 NA Intergenic L1MA3|LINE|L1 -90202 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 656-13 chr8 10020750 10021291 + 2 NA Intergenic L1MC5a|LINE|L1 -33272 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 400.5-30 chr8 136086947 136087207 + 2 NA Intergenic L1MA10|LINE|L1 -443721 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 408-11 chr13 34030586 34030920 + 2 NA Intergenic Intergenic 212604 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 161-7 chr18 65114405 65114550 + 2 NA Intergenic L2c|LINE|L2 -635775 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 338-33 chr7 37557826 37558161 + 2 NA Intergenic Intergenic -108667 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 294.5-6 chr10 80673735 80674147 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 24144 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 443-36 chr8 86996061 86996456 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 129843 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 427-33 chr9 118541284 118541635 + 2 NA Intergenic Intergenic -138212 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 772-5 chr15 65065207 65065795 + 2 NA intron (NM_016563, intron 1 of 4) intron (NM_016563, intron 1 of 4) 2490 NM_016563 51285 Hs.27018 NM_016563 ENSG00000103710 RASL12 RIS RAS like family 12 protein-coding 458-6 chr10 73603970 73604276 + 2 NA intron (NM_001350995, intron 1 of 21) AluSx4|SINE|Alu -12781 NR_146998 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 548-3 chr1 242453396 242453802 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -4117 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 256-29 chr7 55832976 55833228 + 2 NA intron (NM_207366, intron 6 of 9) AluSx3|SINE|Alu 29650 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 385.5-26 chr2 142978779 142979239 + 2 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 101345 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 292.5-2 chr1 52309576 52309726 + 2 NA intron (NM_007324, intron 12 of 17) intron (NM_007324, intron 12 of 17) 56554 NM_001330585 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 206-17 chr5 38963217 38963346 + 2 NA intron (NM_001285439, intron 16 of 38) L1M5|LINE|L1 111118 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 290.5-24 chr5 176659171 176659376 + 2 NA TTS (NM_001366492) TTS (NM_001366492) 11789 NM_130465 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 322-17 chr4 33509363 33509622 + 2 NA Intergenic MER57A-int|LTR|ERV1 530401 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 249.5-2 chr1 94424570 94424769 + 2 NA intron (NM_002858, intron 1 of 22) AluJo|SINE|Alu 6280 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 149-8 chr4 61151249 61151375 + 2 NA intron (NR_147148, intron 3 of 3) intron (NR_147148, intron 3 of 3) 7656 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 339-26 chr4 100822036 100822263 + 2 NA Intergenic Intergenic -147036 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 456-12 chr16 11744005 11744364 + 2 NA Intergenic AluJo|SINE|Alu -1327 NM_001324022 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 498-6 chr1 214396980 214397365 + 2 NA intron (NM_005401, intron 8 of 18) intron (NM_005401, intron 8 of 18) 116013 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 487-12 chr12 3750230 3750589 + 2 NA intron (NM_001144958, intron 1 of 19) MIR|SINE|MIR 2700 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 426-21 chr20 20616281 20616550 + 2 NA intron (NM_020343, intron 12 of 39) intron (NM_020343, intron 12 of 39) 96229 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 253-30 chr5 157496667 157496820 + 2 NA intron (NM_033274, intron 14 of 22) intron (NM_033274, intron 14 of 22) -36643 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 421-32 chr6 50379049 50379377 + 2 NA Intergenic Intergenic -329284 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 230-25 chr4 42435605 42435765 + 2 NA intron (NM_001105529, intron 32 of 35) L2a|LINE|L2 38197 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 395-3 chr12 8738695 8738992 + 2 NA intron (NR_147950, intron 2 of 8) LTR78B|LTR|ERV1 40852 NM_001297776 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 364-18 chr18 78256033 78256304 + 2 NA Intergenic Intergenic -262441 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 203-13 chr2 166086102 166086284 + 2 NA intron (NR_110260, intron 1 of 11) MER72|LTR|ERV1 4662 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 528.5-11 chr20 63373423 63373724 + 2 NA Intergenic Intergenic -12177 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 427.5-22 chr5 113275617 113275910 + 2 NA intron (NM_001085377, intron 3 of 18) MER2|DNA|TcMar-Tigger 19175 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 313.5-2 chr1 95560899 95561279 + 2 NA Intergenic Intergenic 50973 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 199-9 chr2 14236511 14236611 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 164397 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 480.5-6 chr2 133838973 133839239 + 2 NA Intergenic L1ME4a|LINE|L1 -270643 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 280.5-15 chr2 115058389 115058809 + 2 NA intron (NM_001321910, intron 2 of 26) AluSx1|SINE|Alu -5974 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 409-17 chr2 123408461 123408704 + 2 NA Intergenic L1MD1|LINE|L1 -335101 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 321-17 chr22 50573623 50573830 + 2 NA intron (NR_027928, intron 19 of 29) intron (NR_027928, intron 19 of 29) 4291 NM_001145137 1375 Hs.439777 NM_004377 ENSG00000205560 CPT1B CPT1-M|CPT1M|CPTI|CPTI-M|M-CPT1|MCCPT1|MCPT1 carnitine palmitoyltransferase 1B protein-coding 523-8 chr12 14674462 14675044 + 2 NA exon (NM_004963, exon 8 of 27) exon (NM_004963, exon 8 of 27) 21846 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 254-9 chr12 30950332 30950520 + 2 NA intron (NM_001370301, intron 1 of 6) intron (NM_001370301, intron 1 of 6) 23522 NM_001080509 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 260-28 chr5 45252388 45252629 + 2 NA Intergenic Intergenic 443561 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 249.5-4 chr10 77368355 77368558 + 2 NA intron (NR_126365, intron 3 of 5) L1ME1|LINE|L1 17584 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 381.5-29 chr9 77611381 77611780 + 2 NA intron (NM_004297, intron 1 of 6) LTR40b|LTR|ERVL 36742 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 449-18 chr21 28972756 28973108 + 2 NA intron (NM_015565, intron 6 of 29) L1MEd|LINE|L1 19945 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 448-3 chr1 207889685 207890084 + 2 NA intron (NM_001025109, intron 4 of 7) intron (NM_001025109, intron 4 of 7) 21241 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 187.5-29 chr7 25168999 25169153 + 2 NA intron (NM_138811, intron 2 of 9) L1MB7|LINE|L1 11278 NM_138811 136895 Hs.122055 NM_138811 ENSG00000153790 C7orf31 - chromosome 7 open reading frame 31 protein-coding 307-28 chr3 153685582 153685771 + 2 NA intron (NR_146713, intron 2 of 6) MER20B|DNA|hAT-Charlie 76850 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 640.5 chr1 68035249 68035851 + 2 NA intron (NR_040077, intron 2 of 9) THE1D|LTR|ERVL-MaLR 16081 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 384-12 chr2 53264508 53264877 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -503091 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 388.5-9 chr2 70264762 70265113 + 2 NA intron (NM_016297, intron 3 of 5) AluSz|SINE|Alu 6800 NM_016297 51449 Hs.567502 NM_016297 ENSG00000116005 PCYOX1 PCL1 prenylcysteine oxidase 1 protein-coding 379-34 chr5 132568944 132569179 + 2 NA intron (NM_005732, intron 2 of 24) L1MEc|LINE|L1 12084 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 393.5-3 chr10 116027537 116027835 + 2 NA Intergenic MLT2D|LTR|ERVL 167103 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 619-10 chr4 30554722 30555274 + 2 NA Intergenic Intergenic -165371 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 289-6 chr1 239518380 239518563 + 2 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -110602 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 584-11 chr21 18481769 18482077 + 2 NA Intergenic Intergenic -78138 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 398-8 chr14 53959773 53960155 + 2 NA Intergenic Intergenic -3073 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 483 chr1 80833363 80833905 + 2 NA Intergenic Intergenic 192347 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 531-23 chr3 179388683 179389294 + 2 NA intron (NM_033540, intron 16 of 17) intron (NM_033540, intron 16 of 17) 41279 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 239-21 chr3 28724820 28725051 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 149657 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 448-24 chr21 21719767 21720099 + 2 NA Intergenic Intergenic 17386 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 535.5-5 chr15 95269824 95270272 + 2 NA Intergenic Intergenic 57052 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 237-2 chr1 237938375 237938570 + 2 NA Intergenic MamRep564|Unknown|Unknown -47550 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 711.5-3 chr20 43109370 43109863 + 2 NA intron (NM_133170, intron 1 of 31) L2a|LINE|L2 80290 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 326-17 chr16 54063818 54064077 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 24554 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 276-34 chr3 182559512 182559719 + 2 NA Intergenic L1MEc|LINE|L1 -52491 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 207.5-11 chr12 84675027 84675148 + 2 NA Intergenic Intergenic 237712 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 441.5-18 chr8 132100508 132100776 + 2 NA intron (NM_001145095, intron 2 of 15) L2c|LINE|L2 4623 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 241-23 chr8 134603790 134603946 + 2 NA intron (NM_020863, intron 5 of 15) LTR79|LTR|ERVL 5797 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 672.5-2 chr10 107802404 107802868 + 2 NA Intergenic Intergenic 266657 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 637.5-5 chr20 51200254 51200680 + 2 NA Intergenic Intergenic -177360 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 642.5 chr1 231918991 231919416 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -6631 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 266-13 chr14 78311401 78311576 + 2 NA intron (NR_073547, intron 4 of 20) MER30|DNA|hAT-Charlie -92231 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 215.5-28 chr3 43603158 43603351 + 2 NA intron (NM_001346463, intron 2 of 12) HAL1|LINE|L1 18672 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 333.5-7 chr15 68656274 68656534 + 2 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 14901 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 309-27 chr3 168073481 168073716 + 2 NA intron (NM_001308155, intron 1 of 14) L2a|LINE|L2 22326 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 302-26 chr5 171157091 171157325 + 2 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -152040 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 342-14 chr18 67034683 67034904 + 2 NA Intergenic Intergenic -46791 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 242.5-26 chr4 148810973 148811122 + 2 NA Intergenic Intergenic 131331 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 494-7 chr15 46807047 46807553 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -376789 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 414.5-26 chr9 95128455 95128853 + 2 NA intron (NM_001243744, intron 8 of 13) intron (NM_001243744, intron 8 of 13) -42560 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 599-14 chr6 73085860 73086260 + 2 NA intron (NM_001160132, intron 5 of 13) intron (NM_001160132, intron 5 of 13) 57454 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 340-8 chr10 111671237 111671527 + 2 NA Intergenic L1MCa|LINE|L1 512383 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 275-10 chr12 5572864 5573021 + 2 NA intron (NM_001278596, intron 24 of 25) intron (NM_001278596, intron 24 of 25) 78810 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 347.5-21 chr3 119246795 119246980 + 2 NA intron (NR_046574, intron 3 of 3) L1PB2|LINE|L1 -6009 NM_212543 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 306.5-6 chr1 185436779 185437019 + 2 NA Intergenic Intergenic -101860 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 424-7 chr2 106325880 106326250 + 2 NA Intergenic MER39B|LTR|ERV1 -43680 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 415-16 chr18 8458859 8459374 + 2 NA Intergenic Intergenic -92082 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 266-33 chr5 10377744 10377962 + 2 NA exon (NM_005885, exon 2 of 26) exon (NM_005885, exon 2 of 26) 24158 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 273-14 chr18 6801355 6801517 + 2 NA intron (NM_001366230, intron 1 of 17) L1MEc|LINE|L1 -33049 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 301-32 chr6 47947911 47948141 + 2 NA intron (NM_207499, intron 2 of 2) MLT1F2|LTR|ERVL-MaLR 120663 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 580.5-7 chr6 55500190 55500625 + 2 NA intron (NM_001287741, intron 4 of 7) Kanga11a|DNA|TcMar-Tc2 78807 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 458-7 chr10 99017252 99017569 + 2 NA intron (NM_021828, intron 3 of 11) L1PA13|LINE|L1 -92842 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 453-33 chr9 69331769 69332203 + 2 NA intron (NM_004816, intron 1 of 10) intron (NM_004816, intron 1 of 10) 2661 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 497.5-16 chr7 38831534 38831854 + 2 NA intron (NM_014396, intron 4 of 28) MIRc|SINE|MIR 77497 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 501-27 chr9 35090507 35090929 + 2 NA intron (NM_032634, intron 7 of 10) intron (NM_032634, intron 7 of 10) 5831 NM_001201484 84720 Hs.522099 NM_032634 ENSG00000165282 PIGO HPMRS2 phosphatidylinositol glycan anchor biosynthesis class O protein-coding 245-30 chr5 117776308 117776486 + 2 NA intron (NR_104997, intron 1 of 2) L1PB1|LINE|L1 46036 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 394.5-20 chr4 62271479 62271796 + 2 NA Intergenic MLT2B4|LTR|ERVL -109872 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 475-34 chr9 78512980 78513380 + 2 NA Intergenic Intergenic 216055 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 482-10 chr2 68185285 68185768 + 2 NA intron (NM_000945, intron 5 of 5) (AT)n|Simple_repeat|Simple_repeat 27638 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 493-26 chr7 103035823 103036172 + 2 NA intron (NM_001111038, intron 2 of 18) MER1B|DNA|hAT-Charlie 38571 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 429.5-2 chr1 59523041 59523485 + 2 NA intron (NM_001278224, intron 1 of 9) intron (NM_001278224, intron 1 of 9) 7633 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 513-14 chr18 40374251 40374507 + 2 NA Intergenic Intergenic 308093 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 335-58 chr9 124636334 124636592 + 2 NA intron (NM_033334, intron 2 of 9) L1MC1|LINE|L1 -21973 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 422.5-15 chr4 63158018 63158374 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -996431 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 405-32 chr6 76161524 76161853 + 2 NA Intergenic MIR3|SINE|MIR -89010 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 214-14 chr3 195544376 195544546 + 2 NA Intergenic Intergenic -1136 NR_133014 5504 Hs.535731 NM_006241 ENSG00000184203 PPP1R2 IPP-2|IPP2|PPP1R2A protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding 190-14 chr5 142608518 142608615 + 2 NA intron (NM_000800, intron 2 of 3) (AT)n|Simple_repeat|Simple_repeat 12768 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 236-20 chr21 32675251 32675446 + 2 NA intron (NM_001160306, intron 12 of 27) intron (NM_001160306, intron 12 of 27) 52573 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 407-22 chr3 973876 974113 + 2 NA Intergenic Intergenic -119030 NM_001349354 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 349.5-8 chr12 99910234 99910653 + 2 NA intron (NM_152788, intron 1 of 25) L1MB8|LINE|L1 74211 NM_001352186 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 519.5-2 chr1 199081670 199081987 + 2 NA Intergenic Intergenic -62864 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 597-14 chr2 190898981 190899493 + 2 NA intron (NM_014905, intron 3 of 17) intron (NM_014905, intron 3 of 17) 18416 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 593-7 chr2 23713372 23713897 + 2 NA Intergenic L1MB7|LINE|L1 213489 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 328.5-14 chr16 12871369 12871605 + 2 NA Intergenic Intergenic -30111 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 626.5-3 chr2 36705769 36706135 + 2 NA intron (NM_001177969, intron 1 of 14) MER20|DNA|hAT-Charlie 9245 NM_001177971 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 354-9 chr15 60132702 60133033 + 2 NA Intergenic Intergenic 128556 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 197-16 chr22 49889469 49889706 + 2 NA 3' UTR (NM_014838, exon 2 of 2) 3' UTR (NM_014838, exon 2 of 2) 28851 NM_024105 79087 Hs.526711 NM_024105 ENSG00000182858 ALG12 CDG1G|ECM39|PP14673|hALG12 ALG12 alpha-1,6-mannosyltransferase protein-coding 493.5-13 chr3 189474385 189474631 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -122238 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 429-21 chr22 20841625 20842005 + 2 NA intron (NM_058004, intron 1 of 54) MLT1D|LTR|ERVL-MaLR 16996 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 239-20 chr3 24456708 24456870 + 2 NA intron (NM_001354709, intron 1 of 10) (ATAAT)n|Simple_repeat|Simple_repeat -37298 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 218 chr1 188016093 188016264 + 2 NA Intergenic Intergenic 572550 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 166 chr1 178467419 178467525 + 2 NA intron (NM_004841, intron 15 of 15) intron (NM_004841, intron 15 of 15) -45637 NM_001170722 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 455-37 chr9 82198458 82198858 + 2 NA Intergenic Intergenic 209886 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 335-8 chr12 1877456 1877753 + 2 NA intron (NM_172364, intron 16 of 37).2 intron (NM_172364, intron 16 of 37).2 41048 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 444-6 chr11 77761473 77761733 + 2 NA intron (NM_016578, intron 2 of 15) intron (NM_016578, intron 2 of 15) 59231 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 436.5 chr1 71542640 71542957 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 294214 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 290-14 chr19 51671834 51672003 + 2 NA Intergenic L1ME3B|LINE|L1 -17516 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 237.5-21 chr7 11118134 11118342 + 2 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 144366 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 157-9 chr2 204132454 204132594 + 2 NA Intergenic Intergenic 195776 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 296-9 chr12 116585442 116585729 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 26204 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 800.5-4 chr7 25974480 25975116 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -24812 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 393-31 chr6 78933319 78933674 + 2 NA TTS (NM_017934) TTS (NM_017934) 65945 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 552-4 chr11 41313788 41314323 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 145581 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 280-21 chr2 139907153 139907362 + 2 NA Intergenic Intergenic 679428 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 330.5-13 chr12 121458044 121458260 + 2 NA intron (NM_001005366, intron 12 of 22) AluJo|SINE|Alu -13800 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 236-7 chr12 23693984 23694157 + 2 NA intron (NM_152989, intron 9 of 17) L1MEd|LINE|L1 -109484 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 376-27 chr6 66623812 66624096 + 2 NA Intergenic L1MD2|LINE|L1 836075 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 375-33 chr7 85485813 85486174 + 2 NA intron (NR_134240, intron 3 of 3) intron (NR_134240, intron 3 of 3) 64871 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 248-5 chr14 45225582 45225769 + 2 NA intron (NM_018353, intron 10 of 16) intron (NM_018353, intron 10 of 16) 27527 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 351.5-11 chr2 119726375 119726772 + 2 NA Intergenic L1ME4a|LINE|L1 -33349 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 609-13 chr4 54140244 54140733 + 2 NA Intergenic L1M1|LINE|L1 40325 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 385-31 chr5 19072268 19072597 + 2 NA Intergenic Intergenic 813840 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 321-4 chr10 69020276 69020713 + 2 NA Intergenic Intergenic 31691 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 243-2 chr1 109341719 109341918 + 2 NA intron (NM_001205228, intron 9 of 19) intron (NM_001205228, intron 9 of 19) -34807 NM_001010985 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 352-12 chr18 25221353 25221623 + 2 NA intron (NM_001308225, intron 3 of 6) L3|LINE|CR1 130678 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 210-8 chr16 80367377 80367511 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -173290 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 303-23 chr4 103747038 103747269 + 2 NA Intergenic LOR1-int|LTR|ERV1 -27168 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 895-2 chr18 59610647 59611307 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 86446 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 292-5 chr11 82296868 82297327 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 106816 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 416-18 chr20 54232630 54232903 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 24679 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 310-5 chr1 181820463 181820752 + 2 NA Intergenic Intergenic 241105 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 245-16 chr17 42054154 42054353 + 2 NA Intergenic Intergenic -3652 NM_001358661 110806298 Hs.127116 NM_001358661 ENSG00000267221 C17orf113 - chromosome 17 open reading frame 113 protein-coding 323-8 chr14 61139703 61139930 + 2 NA Intergenic Intergenic 141522 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 522.5-2 chr1 21065809 21066394 + 2 NA intron (NM_003760, intron 1 of 31) AluJb|SINE|Alu 45282 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 488.5-14 chr7 53823235 53823765 + 2 NA Intergenic L1PA10|LINE|L1 -11569 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 616.5-5 chr11 111123901 111124289 + 2 NA Intergenic Intergenic -26777 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 198-13 chr22 27466802 27466943 + 2 NA Intergenic MIRb|SINE|MIR 156221 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 285-18 chr19 28062480 28062669 + 2 NA Intergenic Intergenic -268634 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 419-29 chr7 130947742 130948085 + 2 NA intron (NR_024153, intron 3 of 4) intron (NR_024153, intron 3 of 4) 34449 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 271-3 chr10 75305046 75305246 + 2 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 8763 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 378.5-18 chr20 42666899 42667104 + 2 NA intron (NM_133170, intron 7 of 31) L1ME4a|LINE|L1 -18482 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 419-17 chr2 121854547 121854938 + 2 NA Intergenic HAL1|LINE|L1 99091 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 560.5-9 chr2 166761788 166762223 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -126482 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 426-4 chr11 68748104 68748415 + 2 NA intron (NM_001039656, intron 2 of 5) intron (NM_001039656, intron 2 of 5) 3261 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 135-5 chr4 105700500 105700603 + 2 NA intron (NM_001142471, intron 1 of 6) intron (NM_001142471, intron 1 of 6) 8138 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 256-25 chr5 31929075 31929258 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 6993 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 593-15 chr6 47908911 47909298 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 122036 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 473-7 chr14 33059610 33060039 + 2 NA intron (NM_001164749, intron 2 of 11) AluJo|SINE|Alu 120945 NM_173159 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 445.5-27 chr8 96751097 96751460 + 2 NA intron (NM_016134, intron 1 of 7) L1PA11|LINE|L1 106036 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 392-28 chr4 65860780 65861213 + 2 NA Intergenic Intergenic -190501 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 411-5 chr1 173794540 173794764 + 2 NA Intergenic L1M3|LINE|L1 29480 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 267-44 chr5 117760391 117760620 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 30144 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 237-21 chr5 63898169 63898327 + 2 NA Intergenic L1MDa|LINE|L1 64044 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 350.5-4 chr15 49501514 49501935 + 2 NA intron (NM_001330293, intron 10 of 10) MSTB-int|LTR|ERVL-MaLR 78482 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 382-40 chr6 138855862 138856218 + 2 NA intron (NM_001077706, intron 10 of 21) L2|LINE|L2 59929 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 337.5-8 chr16 6576800 6577207 + 2 NA intron (NM_018723, intron 2 of 15) MLT1J1|LTR|ERVL-MaLR -196806 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 366-16 chr3 189026523 189026866 + 2 NA Intergenic L2|LINE|L2 -79055 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 382.5-20 chr7 32882558 32882875 + 2 NA intron (NM_015483, intron 1 of 3) AluSz|SINE|Alu 9044 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 557.5-2 chr11 106517272 106517776 + 2 NA Intergenic L1ME2|LINE|L1 266117 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 492-14 chr15 63711970 63712372 + 2 NA intron (NM_003922, intron 24 of 77) L2|LINE|L2 -111344 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 336-6 chr10 58228150 58228445 + 2 NA intron (NM_152230, intron 2 of 5) L1MC4a|LINE|L1 39597 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 368-5 chr11 28399374 28399722 + 2 NA Intergenic Intergenic 78000 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 335-47 chr6 164804093 164804397 + 2 NA intron (NR_131926, intron 3 of 3) L1M4a1|LINE|L1 17818 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 181-20 chr7 120698199 120698325 + 2 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 159882 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 322.5-13 chr2 54684452 54684690 + 2 NA Intergenic L1MC4|LINE|L1 -40441 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 315-7 chr10 92389648 92389827 + 2 NA Intergenic Intergenic -28924 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 474-30 chr6 69967528 69967933 + 2 NA intron (NM_001858, intron 11 of 50) intron (NM_001858, intron 11 of 50) 101174 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 443-32 chr5 136233828 136234099 + 2 NA intron (NM_020389, intron 7 of 11) intron (NM_020389, intron 7 of 11) 7308 NR_133682 106478968 Hs.637713 NR_133682 ENSG00000250947 TRPC7-AS2 CTB-28J9.2 TRPC7 antisense RNA 2 ncRNA 599-6 chr17 81472753 81473090 + 2 NA Intergenic Intergenic -21733 NR_036152 100422944 NR_036152 ENSG00000266189 MIR3186 mir-3186 microRNA 3186 ncRNA 361-28 chr7 95749924 95750270 + 2 NA Intergenic Intergenic -22409 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 202-7 chr18 46238617 46238832 + 2 NA intron (NM_001008239, intron 2 of 3) intron (NM_001008239, intron 2 of 3) 64690 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 334-12 chr15 99975594 99975896 + 2 NA intron (NM_139057, intron 21 of 21) intron (NM_139057, intron 21 of 21) 168722 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 537-12 chr2 173218634 173219150 + 2 NA intron (NM_016653, intron 11 of 19) intron (NM_016653, intron 11 of 19) 63144 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 221-21 chr5 53235664 53235817 + 2 NA Intergenic Intergenic 125898 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 608 chr1 52695961 52696441 + 2 NA intron (NM_023077, intron 1 of 2) AluSq2|SINE|Alu 2146 NM_023077 65260 Hs.349905 NM_023077 ENSG00000162377 COA7 C1orf163|RESA1|SCAN3|SELRC1 cytochrome c oxidase assembly factor 7 (putative) protein-coding 407-25 chr6 72093712 72094071 + 2 NA intron (NM_001350411, intron 2 of 3) L1MEd|LINE|L1 -119002 NM_001350446 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 818.5-6 chr7 94468811 94469379 + 2 NA Intergenic Intergenic -40714 NM_001363427 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 636-3 chr11 99500654 99501276 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -55180 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 308-14 chr17 64531657 64531869 + 2 NA intron (NR_133644, intron 13 of 19) intron (NR_133644, intron 13 of 19) 24786 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 326-19 chr18 7907857 7908286 + 2 NA intron (NM_002845, intron 4 of 30) L1ME3Cz|LINE|L1 340755 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 302.5-37 chr7 98345090 98345286 + 2 NA intron (NM_018842, intron 3 of 13) intron (NM_018842, intron 3 of 13) 55902 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 231.5-26 chr5 136711619 136711740 + 2 NA Intergenic L1MC3|LINE|L1 -346203 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 127-4 chr2 118717803 118717876 + 2 NA Intergenic Intergenic -114873 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 222 chr1 246902274 246902409 + 2 NA intron (NM_015446, intron 8 of 35) intron (NM_015446, intron 8 of 35) 29017 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 681.5-2 chr14 54576395 54576936 + 2 NA intron (NM_015589, intron 1 of 11) L3|LINE|CR1 9053 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 468-13 chr17 61811242 61811638 + 2 NA intron (NM_032043, intron 6 of 19) AluSp|SINE|Alu 52119 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 421-33 chr6 125245988 125246229 + 2 NA intron (NM_003287, intron 3 of 6) L1PBa|LINE|L1 42397 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 281.5-20 chr3 51268731 51269019 + 2 NA intron (NM_004947, intron 23 of 52) intron (NM_004947, intron 23 of 52) -116416 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 385-39 chr8 29824031 29824266 + 2 NA intron (NR_125817, intron 1 of 2) intron (NR_125817, intron 1 of 2) 4356 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 144-2 chr11 5123552 5123653 + 2 NA Intergenic LTR48B|LTR|ERV1 9040 NM_001005160 390054 Hs.546593 NM_001005160 ENSG00000171944 OR52A5 OR11-33 olfactory receptor family 52 subfamily A member 5 protein-coding 802-4 chr21 20865320 20866034 + 2 NA Intergenic Intergenic -62569 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 296.5-36 chr7 51952063 51952301 + 2 NA Intergenic MIRc|SINE|MIR -558926 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 240-20 chr17 77722666 77722862 + 2 NA TTS (NR_104134) TTS (NR_104134) 5795 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 320-7 chr12 3957897 3958102 + 2 NA Intergenic AluSz|SINE|Alu -84551 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 540.5-2 chr11 12505607 12505958 + 2 NA intron (NM_018222, intron 6 of 12) intron (NM_018222, intron 6 of 12) 128211 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 314-23 chr20 49357081 49357323 + 2 NA Intergenic MER112|DNA|hAT-Charlie 76519 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 447-4 chr10 122483943 122484460 + 2 NA intron (NM_002775, intron 1 of 8) intron (NM_002775, intron 1 of 8) 22648 NM_002775 5654 Hs.501280 NM_002775 ENSG00000166033 HTRA1 ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 458-14 chr16 80754480 80754868 + 2 NA intron (NM_152342, intron 1 of 6) MIRb|SINE|MIR 49924 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 300.5-19 chr19 51187580 51187893 + 2 NA Intergenic Intergenic -5770 NR_110732 101928517 Hs.707693 NR_110732 ENSG00000269072 LOC101928517 - uncharacterized LOC101928517 ncRNA 491.5-11 chr2 45024177 45024601 + 2 NA Intergenic Intergenic -14937 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 365-33 chr8 76606747 76607071 + 2 NA Intergenic Intergenic -74338 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 305-21 chr2 73742724 73743020 + 2 NA Intergenic AluSx1|SINE|Alu -5466 NM_001330389 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 338-17 chr2 51904837 51905063 + 2 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -465698 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 441-12 chr16 54140630 54140995 + 2 NA Intergenic (TTTCTCT)n|Simple_repeat|Simple_repeat 101419 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 575.5-11 chr6 36992638 36993209 + 2 NA Intergenic AluSx1|SINE|Alu -6372 NR_130739 23787 Hs.485262 NM_014341 ENSG00000137409 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 595.5-9 chr4 182324324 182324725 + 2 NA intron (NM_001080477, intron 2 of 27) intron (NM_001080477, intron 2 of 27) 81122 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 306-21 chr3 126906293 126906553 + 2 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -82171 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 449-27 chr6 70718923 70719265 + 2 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 50564 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 267-11 chr14 67876374 67876564 + 2 NA intron (NM_133509, intron 5 of 10) intron (NM_133509, intron 5 of 10) 52877 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 402.5-24 chr5 28554726 28555230 + 2 NA Intergenic L1M1|LINE|L1 -267313 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 159.5-16 chr2 108365460 108365539 + 2 NA Intergenic Intergenic -12455 NR_135776 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 417-12 chr12 8649120 8649500 + 2 NA intron (NR_123734, intron 8 of 9) MamRep1879|DNA|hAT-Tip100? 13516 NM_001297711 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 491-9 chr12 93050641 93051115 + 2 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -121583 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 362-14 chr18 60538813 60539169 + 2 NA Intergenic L1MB7|LINE|L1 -166216 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 486-25 chr20 56496525 56496878 + 2 NA exon (NM_080615, exon 5 of 7) exon (NM_080615, exon 5 of 7) -28028 NM_001012971 200232 Hs.504907 NM_001012971 ENSG00000124103 FAM209A C20orf106|dJ1153D9.3 family with sequence similarity 209 member A protein-coding 231-22 chr5 44512142 44512444 + 2 NA Intergenic Intergenic -2011 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 705-11 chr9 28283379 28284030 + 2 NA intron (NM_152570, intron 5 of 6) MIR|SINE|MIR 435601 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 335.5-29 chr5 67817277 67817483 + 2 NA Intergenic Charlie16a|DNA|hAT-Charlie 24167 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 432-8 chr15 48262084 48262502 + 2 NA intron (NM_001184832, intron 17 of 26) intron (NM_001184832, intron 17 of 26) 55991 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 433-23 chr5 8309182 8309409 + 2 NA Intergenic L1M1|LINE|L1 148269 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 604.5-4 chr14 59211769 59212428 + 2 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 23431 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 195-25 chr8 140286204 140286332 + 2 NA intron (NM_001160372, intron 13 of 22) intron (NM_001160372, intron 13 of 22) 171476 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 448-15 chr2 7429276 7429527 + 2 NA intron (NR_038432, intron 3 of 5) LTR50|LTR|ERVL 8140 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 330-8 chr10 63250279 63250465 + 2 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 18851 NM_001282948 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 382-7 chr12 79910472 79910923 + 2 NA intron (NM_001244990, intron 2 of 24) intron (NM_001244990, intron 2 of 24) 3214 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 158.5-16 chr22 31494953 31495071 + 2 NA Intergenic Intergenic -1127 NM_001258325 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 262-29 chr6 56212045 56212227 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 35444 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 598-8 chr5 31628249 31628632 + 2 NA Intergenic L2b|LINE|L2 -10691 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 207.5-32 chr6 90393639 90393744 + 2 NA Intergenic Intergenic 80949 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 186-5 chr14 62083721 62083837 + 2 NA intron (NM_001367661, intron 7 of 8) intron (NM_001367661, intron 7 of 8) -33578 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 776-3 chr4 13048823 13049368 + 2 NA Intergenic L1ME2|LINE|L1 435245 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 238-35 chr7 46238420 46238655 + 2 NA Intergenic L1MD1|LINE|L1 -317265 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 536-18 chr5 30244753 30245261 + 2 NA Intergenic Intergenic 364447 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 928-3 chr18 63648951 63649690 + 2 NA Intergenic AluSz|SINE|Alu -5064 NM_002974 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 448-21 chr2 171050129 171050527 + 2 NA intron (NM_001136555, intron 6 of 18) intron (NM_001136555, intron 6 of 18) 16645 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 224-22 chr5 7762188 7762351 + 2 NA intron (NM_020546, intron 16 of 24) intron (NM_020546, intron 16 of 24) 88864 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 284.5-23 chr2 19088284 19088530 + 2 NA Intergenic Intergenic -61436 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 305-14 chr13 95111918 95112143 + 2 NA intron (NM_001105515, intron 20 of 20) intron (NM_001105515, intron 20 of 20) -98314 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 609 chr12 124440997 124441488 + 2 NA intron (NM_001077261, intron 9 of 47) L1MC4a|LINE|L1 -104000 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 266-12 chr14 58544666 58544910 + 2 NA intron (NM_001329944, intron 31 of 31) intron (NM_001329944, intron 31 of 31) -89280 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 249.5-21 chr3 55291689 55292026 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 113685 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 440.5-10 chr14 56963547 56963920 + 2 NA Intergenic Intergenic 150575 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 289.5-16 chr13 93232304 93232593 + 2 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 5641 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 307-3 chr1 162280859 162281074 + 2 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) -61580 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 383.5-8 chr13 108905075 108905500 + 2 NA intron (NM_015011, intron 15 of 34) intron (NM_015011, intron 15 of 34) 262016 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 808-5 chr14 67875487 67876197 + 2 NA intron (NM_133509, intron 5 of 10) intron (NM_133509, intron 5 of 10) 52250 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 380-6 chr17 73887670 73888016 + 2 NA Intergenic L2b|LINE|L2 -59306 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 526.5-5 chr12 92853064 92853490 + 2 NA intron (NM_003566, intron 6 of 28) intron (NM_003566, intron 6 of 28) 76018 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 673-7 chr9 38039027 38039572 + 2 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 29928 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 170-12 chr18 48901788 48901917 + 2 NA Intergenic Intergenic 40955 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 230.5-27 chr2 65729290 65729447 + 2 NA Intergenic Intergenic -296769 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 177.5-27 chr8 15264913 15265024 + 2 NA Intergenic Intergenic -26537 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 344.5-23 chr4 107115886 107116139 + 2 NA Intergenic Intergenic -79699 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 256-5 chr12 76253701 76253939 + 2 NA Intergenic Intergenic -6063 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 202-16 chr3 95051304 95051497 + 2 NA Intergenic Intergenic 113137 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 366.5-25 chr4 168366122 168366342 + 2 NA intron (NM_001345927, intron 36 of 37) L1MA6|LINE|L1 -47480 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 374-24 chr4 39787395 39787706 + 2 NA Intergenic AluSp|SINE|Alu 89414 NM_001111112 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 203-7 chr18 65060994 65061185 + 2 NA Intergenic Intergenic -689163 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 283-44 chr8 121778511 121778890 + 2 NA Intergenic AluY|SINE|Alu -137260 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 374-12 chr18 45880662 45881051 + 2 NA intron (NM_020964, intron 31 of 43) intron (NM_020964, intron 31 of 43) 55181 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 586.5-6 chr14 69713982 69714718 + 2 NA 3' UTR (NM_014734, exon 6 of 6) 3' UTR (NM_014734, exon 6 of 6) -52792 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 405-31 chr5 160420612 160420936 + 2 NA Intergenic L2a|LINE|L2 -1081 NM_004219 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 PTTG1 regulator of sister chromatid separation, securin protein-coding 237.5-2 chr1 71325445 71325563 + 2 NA Intergenic Intergenic 244180 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 583-6 chr15 61540318 61540671 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -189424 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 318-41 chr7 7801620 7801823 + 2 NA exon (NM_001302348, exon 3 of 4) exon (NM_001302348, exon 3 of 4) -83114 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 486-15 chr15 24674084 24674464 + 2 NA Intergenic Intergenic -1120 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 483-29 chr6 56261589 56262007 + 2 NA intron (NM_001318752, intron 1 of 28) MLT1I|LTR|ERVL-MaLR -14218 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 280.5-26 chr5 11905955 11906197 + 2 NA Intergenic Intergenic -1630 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 426-27 chr3 115850597 115850920 + 2 NA intron (NM_001318915, intron 4 of 8) intron (NM_001318915, intron 4 of 8) 54368 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 334-21 chr4 82419298 82419575 + 2 NA Intergenic Intergenic 10789 NR_003249 9987 Hs.527105 NM_005463 ENSG00000152795 HNRNPDL HNRNP|HNRPDL|JKTBP|JKTBP2|LGMD1G|LGMDD3|laAUF1 heterogeneous nuclear ribonucleoprotein D like protein-coding 395.5-19 chr2 224615504 224615853 + 2 NA Intergenic Intergenic -30281 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 230.5-49 chr7 17597925 17598114 + 2 NA Intergenic L2c|LINE|L2 -39110 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 300-11 chr2 201766853 201767210 + 2 NA intron (NM_020919, intron 3 of 33) L1PA4|LINE|L1 13902 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 241-16 chr5 67006318 67006458 + 2 NA intron (NM_001297651, intron 1 of 25) intron (NM_001297651, intron 1 of 25) 1733 NM_001297651 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 270.5-35 chr8 130568033 130568321 + 2 NA Intergenic AluJo|SINE|Alu -124503 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 447-29 chr8 135222914 135223226 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -11061 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 445-9 chr16 2040066 2040466 + 2 NA intron (NM_002528, intron 4 of 5) intron (NM_002528, intron 4 of 5) 6972 NM_001252075 9351 Hs.440896 NM_004785 ENSG00000065054 SLC9A3R2 E3KARP|NHE3RF2|NHERF-2|NHERF2|OCTS2|SIP-1|SIP1|TKA-1 SLC9A3 regulator 2 protein-coding 355-31 chr5 81482208 81482568 + 2 NA intron (NM_001256733, intron 5 of 15) Tigger1|DNA|TcMar-Tigger -88254 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 555-17 chr3 104764616 104765066 + 2 NA Intergenic Intergenic -601872 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 229-16 chr2 44567507 44567668 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 205640 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 348-16 chr15 66344067 66344343 + 2 NA intron (NM_001289986, intron 5 of 6) FRAM|SINE|Alu 3137 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 410-16 chr2 181558917 181559169 + 2 NA intron (NR_027689, intron 2 of 10) intron (NR_027689, intron 2 of 10) 98062 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 598-13 chr8 26352219 26352737 + 2 NA intron (NM_001177591, intron 3 of 9) HAL1|LINE|L1 30475 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 314.5-20 chr2 215512254 215512553 + 2 NA Intergenic Intergenic 58696 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 447-15 chr2 65582106 65582379 + 2 NA Intergenic MIR|SINE|MIR -149643 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 387.5-19 chr4 4427061 4427366 + 2 NA intron (NM_016930, intron 7 of 10) intron (NM_016930, intron 7 of 10) 34759 NM_001346300 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 349 chr1 37705432 37705662 + 2 NA exon (NM_018101, exon 9 of 11) exon (NM_018101, exon 9 of 11) 13031 NM_018101 55143 Hs.524571 NM_018101 ENSG00000134690 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 336-12 chr12 271981 272291 + 2 NA Intergenic Intergenic -9263 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 234.5-30 chr7 107776068 107776258 + 2 NA intron (NM_000111, intron 15 of 20) intron (NM_000111, intron 15 of 20) 27070 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 239-9 chr12 102826368 102826616 + 2 NA Intergenic Intergenic -2093 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 437-7 chr10 90209134 90209488 + 2 NA Intergenic L1ME1|LINE|L1 -251938 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 242-33 chr8 130291587 130291727 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 4876 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 462.5-17 chr3 191358076 191358421 + 2 NA intron (NM_178335, intron 3 of 11) intron (NM_178335, intron 3 of 11) -27712 NM_198152 257313 Hs.518492 NM_198152 ENSG00000188958 UTS2B U2B|URP|UTS2D urotensin 2B protein-coding 288-2 chr1 73723301 73723547 + 2 NA intron (NR_146300, intron 3 of 3) ERVL-int|LTR|ERVL 48745 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 528-22 chr20 10299099 10299404 + 2 NA intron (NM_001322907, intron 8 of 9) intron (NM_001322907, intron 8 of 9) -79745 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 264-20 chr5 92845813 92846073 + 2 NA Intergenic Intergenic 725400 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 282.5-31 chr8 114128257 114128439 + 2 NA Intergenic L1MA4A|LINE|L1 -691409 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 346-18 chr15 75238308 75238595 + 2 NA Intergenic Intergenic -8761 NM_001321990 105376731 NM_001321990 LOC105376731 - taste receptor cell protein 1-like protein-coding 262.5-13 chr2 229170053 229170313 + 2 NA intron (NM_001100818, intron 1 of 2) MIRc|SINE|MIR 61909 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 555.5-6 chr3 161510184 161510469 + 2 NA Intergenic Intergenic 13518 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 318.5-2 chr10 69647949 69648407 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 17931 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 199.5-29 chr4 36160528 36160627 + 2 NA exon (NM_015230, exon 13 of 33) exon (NM_015230, exon 13 of 33) 83362 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 232.5-21 chr2 103550133 103550286 + 2 NA Intergenic AluYm1|SINE|Alu -565780 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 375-2 chr1 119888957 119889258 + 2 NA Intergenic L1MB2|LINE|L1 7408 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 206.5-32 chr5 14049714 14049862 + 2 NA Intergenic LTR16B1|LTR|ERVL -93554 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 518-19 chr5 80787446 80788016 + 2 NA intron (NM_002439, intron 18 of 23) intron (NM_002439, intron 18 of 23) -132748 NM_000791 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 367.5-5 chr1 160080875 160081207 + 2 NA promoter-TSS (NM_004983) promoter-TSS (NM_004983) -497 NM_004983 3765 Hs.66726 NM_004983 ENSG00000162728 KCNJ9 GIRK3|KIR3.3 potassium voltage-gated channel subfamily J member 9 protein-coding 207.5-33 chr7 39627217 39627457 + 2 NA intron (NM_005402, intron 1 of 4) intron (NM_005402, intron 1 of 4) 3765 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 170.5-5 chr10 93371089 93371285 + 2 NA intron (NM_013451, intron 24 of 53) Charlie1a|DNA|hAT-Charlie 111147 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 327-26 chr2 107280926 107281337 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 68394 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 571-20 chr6 114581106 114581456 + 2 NA Intergenic L1PBa|LINE|L1 -518404 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 380-7 chr18 63121778 63122125 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 197429 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 460.5-30 chr7 78184883 78185201 + 2 NA intron (NM_001301128, intron 12 of 20) MER33|DNA|hAT-Charlie -162200 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 204.5-21 chr20 40161774 40161890 + 2 NA Intergenic Intergenic 157371 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 415-27 chr6 155873626 155873922 + 2 NA Intergenic Intergenic -73023 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 289-27 chr22 19493742 19494034 + 2 NA intron (NM_001369291, intron 5 of 18) MIR|SINE|MIR 13968 NR_161281 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 318.5-16 chr2 133599069 133599399 + 2 NA Intergenic MER117|DNA|hAT-Charlie -30771 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 294-3 chr1 118802847 118803088 + 2 NA Intergenic L1PA17|LINE|L1 185376 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 277-23 chr18 49931167 49931319 + 2 NA intron (NM_001080467, intron 16 of 39) intron (NM_001080467, intron 16 of 39) 117220 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA 347-9 chr17 20040963 20041217 + 2 NA intron (NM_001243439, intron 1 of 14) L1MDa|LINE|L1 31731 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 399-35 chr6 23921526 23921765 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -204570 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 340-40 chr9 1361912 1362105 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 310521 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 528-23 chr3 2824231 2824632 + 2 NA intron (NM_175607, intron 7 of 24) AluSz|SINE|Alu -67784 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 403.5-10 chr2 24897447 24897951 + 2 NA intron (NM_001320613, intron 2 of 21) intron (NM_001320613, intron 2 of 21) 22538 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 640.5-10 chr6 20561487 20561879 + 2 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 27226 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 575-13 chr7 7595007 7595408 + 2 NA intron (NR_163250, intron 9 of 11) intron (NR_163250, intron 9 of 11) 27181 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 573-7 chr19 27958410 27959052 + 2 NA intron (NR_146734, intron 3 of 7) intron (NR_146734, intron 3 of 7) -164791 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 486.5-9 chr2 32507038 32507459 + 2 NA intron (NM_016252, intron 50 of 73) AluSz6|SINE|Alu -24905 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 372-6 chr1 195051976 195052210 + 2 NA Intergenic Intergenic 1036622 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 359-30 chr22 36006094 36006296 + 2 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 22342 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 349.5-14 chr16 87074583 87074844 + 2 NA Intergenic Intergenic 16929 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 436-26 chr3 178273876 178274257 + 2 NA Intergenic MIRb|SINE|MIR -145135 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 153-11 chr6 38571360 38571479 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 24648 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 316.5-2 chr1 80028993 80029174 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -506672 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 308-28 chr6 11412805 11412991 + 2 NA Intergenic Intergenic -30550 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 313-26 chr4 88197152 88197538 + 2 NA intron (NM_001257386, intron 1 of 15) L1MCa|LINE|L1 34281 NM_001257386 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 266-10 chr12 128743596 128743754 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 80283 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 328-25 chr3 83638398 83638708 + 2 NA Intergenic L1PA6|LINE|L1 1231022 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 465.5-19 chr6 37050912 37051242 + 2 NA Intergenic Intergenic 45422 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 330-44 chr8 112665094 112665314 + 2 NA intron (NM_001363185, intron 15 of 66) MER57C1|LTR|ERV1 21711 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 158-9 chr20 57733307 57733415 + 2 NA Intergenic L1ME3A|LINE|L1 -21825 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 366.5-20 chr2 193495665 193495954 + 2 NA Intergenic Intergenic 745964 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 356-24 chr2 191893767 191894028 + 2 NA Intergenic L1MC5|LINE|L1 -46809 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 302 chr1 3638793 3638968 + 2 NA intron (NM_017818, intron 3 of 11) intron (NM_017818, intron 3 of 11) 11223 NM_017818 49856 Hs.31714 NM_017818 ENSG00000116213 WRAP73 WDR8 WD repeat containing, antisense to TP73 protein-coding 255.5-11 chr17 65441597 65441756 + 2 NA Intergenic AluSx1|SINE|Alu -15865 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 295-11 chr13 19901260 19901491 + 2 NA Intergenic L1MB2|LINE|L1 -37726 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 415.5-5 chr13 104318768 104319160 + 2 NA Intergenic Intergenic 893764 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 295-4 chr1 178764383 178764645 + 2 NA intron (NM_152663, intron 1 of 19) L1PA15|LINE|L1 39270 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 429-9 chr12 114477353 114477567 + 2 NA Intergenic MIRc|SINE|MIR -69018 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 228.5-24 chr3 125430448 125430582 + 2 NA Intergenic MER72|LTR|ERV1 -55161 NM_001348430 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 346-10 chr11 21220286 21220495 + 2 NA intron (NM_201551, intron 13 of 18) L1MA5|LINE|L1 550804 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 400-17 chr20 8957057 8957455 + 2 NA Intergenic Intergenic -111798 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 639.5-7 chr5 24910781 24911160 + 2 NA Intergenic L1M5|LINE|L1 -70387 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 333-42 chr9 30613721 30613920 + 2 NA Intergenic L1MA4|LINE|L1 -205366 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 515-6 chr12 70837441 70837816 + 2 NA intron (NM_002849, intron 2 of 13) MER21B|LTR|ERVL -48708 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 381-4 chr1 214528192 214528492 + 2 NA intron (NM_005401, intron 1 of 18) L1ME4c|LINE|L1 23260 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 681.5-8 chr8 6141618 6142048 + 2 NA Intergenic Intergenic 264715 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 539-2 chr1 45297800 45298322 + 2 NA Intergenic Intergenic -5849 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 830-5 chr4 118327661 118328141 + 2 NA intron (NM_003619, intron 4 of 12) intron (NM_003619, intron 4 of 12) 25102 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 serine protease 12 protein-coding 263.5-26 chr7 25543636 25543767 + 2 NA Intergenic L2b|LINE|L2 119439 NR_157822 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 535-5 chr1 238753662 238754169 + 2 NA Intergenic Intergenic -267898 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 425-39 chr8 130629627 130629981 + 2 NA Intergenic Intergenic -186130 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 564-25 chr7 50243202 50243699 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -60614 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 257-14 chr14 73825181 73825349 + 2 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 4870 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 286-7 chr13 74379891 74380054 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 39143 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 292 chr1 63525946 63526143 + 2 NA intron (NM_032437, intron 2 of 13) intron (NM_032437, intron 2 of 13) 2519 NM_032437 84455 Hs.652324 NM_032437 ENSG00000203965 EFCAB7 - EF-hand calcium binding domain 7 protein-coding 244-21 chr3 177925535 177925813 + 2 NA Intergenic L3|LINE|CR1 108809 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 419-11 chr15 47470085 47470370 + 2 NA intron (NM_001198999, intron 2 of 19) MER113|DNA|hAT-Charlie -247278 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 901 chr11 75679746 75680384 + 2 NA Intergenic L1MEi|LINE|L1 -11631 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 386-11 chr16 13252483 13252735 + 2 NA Intergenic L2a|LINE|L2 351011 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 436-3 chr1 64399258 64399662 + 2 NA Intergenic Intergenic -70669 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 243-19 chr2 114465377 114465568 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 3895 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 459.5-18 chr6 64122179 64122484 + 2 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 315495 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 236-14 chr18 375923 376162 + 2 NA intron (NM_130386, intron 2 of 9) MIRc|SINE|MIR -107995 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 657-10 chr3 15595907 15596408 + 2 NA intron (NM_001284415, intron 3 of 14) intron (NM_001284415, intron 3 of 14) -5195 NM_001281723 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 334-30 chr8 121210874 121211209 + 2 NA Intergenic L1PB3|LINE|L1 -398995 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 429-13 chr18 8166152 8166392 + 2 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 200762 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 192-3 chr1 224568338 224568490 + 2 NA intron (NR_136293, intron 5 of 9) intron (NR_136293, intron 5 of 9) -47903 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 445.5-25 chr8 84033105 84033498 + 2 NA Intergenic Intergenic -149486 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 355-25 chr3 14378803 14379013 + 2 NA Intergenic Intergenic -23668 NM_001134367 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 388-4 chr10 74137368 74137716 + 2 NA intron (NM_207012, intron 3 of 9) intron (NM_207012, intron 3 of 9) 13286 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 320-12 chr2 27936879 27937131 + 2 NA intron (NM_199193, intron 4 of 13) Tigger1|DNA|TcMar-Tigger -45891 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 425.5-21 chr8 116718794 116719084 + 2 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 36884 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 563-18 chr8 119158120 119158500 + 2 NA Intergenic Intergenic -50053 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 481-19 chr7 36385620 36386091 + 2 NA intron (NM_001100425, intron 1 of 6) (AAAAT)n|Simple_repeat|Simple_repeat -4007 NM_001284302 54443 Hs.62180 NM_018685 ENSG00000011426 ANLN FSGS8|Scraps|scra anillin actin binding protein protein-coding 298 chr1 56795225 56795405 + 2 NA intron (NM_001004303, intron 1 of 19) L1MB2|LINE|L1 24089 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 485-7 chr19 56993688 56994069 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -126263 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 335.5-27 chr3 149844729 149844985 + 2 NA intron (NM_007282, intron 2 of 10) L1MB7|LINE|L1 32169 NM_183381 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 315-26 chr3 190864506 190864811 + 2 NA Intergenic AluSc|SINE|Alu -1964 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 518-2 chr1 100544437 100544788 + 2 NA Intergenic Intergenic 6473 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 375 chr1 101466549 101466814 + 2 NA Intergenic Intergenic 142844 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 869.5-5 chr3 105188725 105189265 + 2 NA Intergenic Intergenic -177718 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 662.5-8 chr8 120473816 120474265 + 2 NA intron (NM_022045, intron 11 of 21) intron (NM_022045, intron 11 of 21) 28621 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 523.5-8 chr2 110716779 110717274 + 2 NA Intergenic Intergenic -15547 NM_001365487 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 313.5-37 chr7 28430739 28431056 + 2 NA intron (NM_182898, intron 1 of 10) MLT1F2|LTR|ERVL-MaLR -4718 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 820.5-2 chr17 55445308 55445883 + 2 NA Intergenic MIR3|SINE|MIR -23760 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 422.5-6 chr17 57657305 57657602 + 2 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -49041 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 518 chr1 73651078 73651501 + 2 NA Intergenic Intergenic -23390 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 572-3 chr14 47564192 47564680 + 2 NA intron (NM_001113498, intron 1 of 16) THE1B|LTR|ERVL-MaLR 110518 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 740.5-7 chr22 27191654 27192274 + 2 NA Intergenic Intergenic 4448 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 217.5-29 chr5 9357056 9357309 + 2 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -154151 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 271.5-24 chr22 44754471 44754633 + 2 NA intron (NM_181335, intron 1 of 11) AluSq2|SINE|Alu 1994 NM_181335 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 357-34 chr5 16686077 16686325 + 2 NA intron (NM_012334, intron 28 of 40) intron (NM_012334, intron 28 of 40) -69143 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 312-5 chr12 119457050 119457284 + 2 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 122438 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 341-36 chr8 112236586 112236885 + 2 NA intron (NM_001363185, intron 63 of 66) Charlie15a|DNA|hAT-Charlie -406758 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 257-15 chr14 89290295 89290500 + 2 NA intron (NM_001085471, intron 3 of 6) intron (NM_001085471, intron 3 of 6) 126836 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 530-7 chr10 59385959 59386317 + 2 NA Intergenic Intergenic -22957 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 869.5 chr10 59702799 59703647 + 2 NA intron (NM_194298, intron 1 of 5) AluJb|SINE|Alu 6668 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 590-12 chr4 80556144 80556701 + 2 NA intron (NM_152770, intron 2 of 5) LOR1-int|LTR|ERV1 220702 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 357-11 chr12 14425144 14425489 + 2 NA exon (NM_018179, exon 2 of 15) exon (NM_018179, exon 2 of 15) 40035 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 348-28 chr5 35888720 35888917 + 2 NA Intergenic Intergenic 31927 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 332-17 chr2 103993055 103993342 + 2 NA Intergenic Intergenic 415134 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 371-27 chr7 39569530 39569805 + 2 NA intron (NM_001282446, intron 1 of 2) intron (NM_001282446, intron 1 of 2) 3263 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 115.5-4 chr11 84395149 84395261 + 2 NA intron (NM_001142699, intron 7 of 27) L1ME3B|LINE|L1 -77866 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 319.5-9 chr14 30564027 30564347 + 2 NA intron (NR_151720, intron 2 of 3) L1MC3|LINE|L1 5029 NM_017769 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 387 chr1 23642642 23643115 + 2 NA Intergenic AluSx1|SINE|Alu 15544 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 422-32 chr8 110754732 110755156 + 2 NA Intergenic Intergenic 272489 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 201-17 chr3 184864681 184864866 + 2 NA intron (NM_001009921, intron 15 of 46) L1MEc|LINE|L1 52266 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 424-3 chr12 22711368 22711694 + 2 NA Intergenic L2|LINE|L2 86360 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 381.5-11 chr2 129531580 129532040 + 2 NA Intergenic L1MD2|LINE|L1 -257919 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 316 chr1 39172329 39172611 + 2 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 88303 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 381-19 chr4 148404859 148405129 + 2 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 37420 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 455.5-3 chr12 33599258 33599856 + 2 NA Intergenic Intergenic -159738 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 794.5 chr1 47300398 47300944 + 2 NA intron (NM_001282938, intron 6 of 18) AluSx3|SINE|Alu 13476 NM_001282938 6491 Hs.525198 NM_003035 ENSG00000123473 STIL MCPH7|SIL STIL centriolar assembly protein protein-coding 171-8 chr2 52087658 52087779 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -282930 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 211-27 chr7 130828068 130828223 + 2 NA Intergenic L1M4c|LINE|L1 48665 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 685-8 chr3 86753969 86754593 + 2 NA Intergenic L1PB2|LINE|L1 236868 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 542.5-19 chr3 191686984 191687316 + 2 NA Intergenic Intergenic 225987 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 252.5-16 chr2 195094698 195094885 + 2 NA Intergenic L1PA16|LINE|L1 364196 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 430-13 chr15 73889959 73890259 + 2 NA TTS (NM_153356) TTS (NM_153356) 16545 NM_001286434 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 507-19 chr3 95281711 95282102 + 2 NA Intergenic Intergenic 343643 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 245-38 chr8 102861002 102861162 + 2 NA intron (NM_015878, intron 1 of 12) L1MD3|LINE|L1 3081 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 338-21 chr20 37940244 37940500 + 2 NA intron (NM_080607, intron 3 of 3) intron (NM_080607, intron 3 of 3) 37245 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 138-6 chr5 15149189 15149335 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger 117298 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 299-19 chr2 157034113 157034395 + 2 NA Intergenic Intergenic -223451 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 650-3 chr10 24195475 24195825 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -13141 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 423.5-2 chr1 226511896 226512208 + 2 NA Intergenic MLT2B4|LTR|ERVL -36712 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 762-6 chr2 114861351 114862095 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -28175 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 338.5-9 chr12 21699832 21700042 + 2 NA Intergenic Intergenic -42082 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 382-27 chr2 235872006 235872357 + 2 NA intron (NM_001037131, intron 9 of 17) MIR|SINE|MIR 296205 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 429-5 chr10 22288343 22288816 + 2 NA Intergenic L1MB5|LINE|L1 -27804 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 351-29 chr3 51315287 51315666 + 2 NA intron (NM_004947, intron 32 of 52) intron (NM_004947, intron 32 of 52) -69815 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 449-4 chr10 58455053 58455307 + 2 NA Intergenic Intergenic -57692 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 273-33 chr8 68466295 68466510 + 2 NA intron (NR_146187, intron 3 of 13) L1MA4A|LINE|L1 -134911 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 149-10 chr4 165587191 165587296 + 2 NA Intergenic Intergenic -97396 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 308-32 chr6 124687006 124687179 + 2 NA intron (NM_001040214, intron 4 of 6) MLT2A1|LTR|ERVL -275453 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 579-3 chr11 97011868 97012323 + 2 NA Intergenic Intergenic 503670 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 182-10 chr3 112782149 112782273 + 2 NA Intergenic L2a|LINE|L2 -20267 NR_149026 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 277-33 chr3 188723706 188723844 + 2 NA intron (NM_001167672, intron 6 of 9) intron (NM_001167672, intron 6 of 9) 34994 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 483.5-15 chr6 11535698 11536272 + 2 NA Intergenic Intergenic -1764 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 655-16 chr7 139755479 139756010 + 2 NA intron (NM_001113239, intron 1 of 14) L3|LINE|CR1 22254 NM_022740 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 544.5-7 chr20 45526896 45527301 + 2 NA Intergenic L1MA9|LINE|L1 -11476 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 355-17 chr2 27660094 27660346 + 2 NA intron (NM_001282732, intron 2 of 4) Charlie29a|DNA|hAT-Charlie -3251 NM_018158 22950 Hs.306000 NM_018158 ENSG00000163798 SLC4A1AP HLC3 solute carrier family 4 member 1 adaptor protein protein-coding 486-3 chr1 209571923 209572365 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -11570 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 178.5-4 chr14 67443619 67443724 + 2 NA Intergenic AluJr|SINE|Alu -1741 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 363-31 chr8 20010673 20010886 + 2 NA Intergenic L1PREC2|LINE|L1 71526 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 589 chr1 23364597 23365135 + 2 NA intron (NM_001370652, intron 2 of 2) MER103C|DNA|hAT-Charlie 3520 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 174-13 chr2 157461535 157461705 + 2 NA Intergenic Intergenic -17531 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 281-10 chr12 13479997 13480164 + 2 NA Intergenic Intergenic -103335 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 364.5-23 chr6 27506245 27506528 + 2 NA Intergenic Intergenic -33268 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 396-33 chr8 83708115 83708391 + 2 NA Intergenic Intergenic 304495 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 336.5-22 chr6 15649120 15649363 + 2 NA intron (NM_001271669, intron 1 of 7) L1MB2|LINE|L1 13787 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 478.5-24 chr8 86664618 86664923 + 2 NA intron (NM_019098, intron 6 of 17) intron (NM_019098, intron 6 of 17) 78905 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 669.5 chr1 62605578 62606071 + 2 NA 3' UTR (NM_014495, exon 7 of 7) 3' UTR (NM_014495, exon 7 of 7) 8304 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 189-14 chr2 29890898 29891078 + 2 NA intron (NM_004304, intron 1 of 28) MIRb|SINE|MIR 30598 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 263-14 chr2 51874851 51875029 + 2 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -495708 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 460-24 chr9 28374697 28375253 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 344330 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 379.5-17 chr3 193781080 193781317 + 2 NA Intergenic Intergenic 62811 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 206-10 chr2 108932833 108933005 + 2 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 56301 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 138.5 chr1 209794473 209794625 + 2 NA intron (NM_006147, intron 5 of 8) intron (NM_006147, intron 5 of 8) -9990 NM_152485 148304 Hs.497642 NM_152485 ENSG00000162757 C1orf74 URLC4 chromosome 1 open reading frame 74 protein-coding 362.5-17 chr2 24172252 24172513 + 2 NA Intergenic Intergenic -2671 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 324-14 chr14 68275939 68276167 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 352734 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 269-22 chr2 123593581 123593823 + 2 NA Intergenic Intergenic 431472 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 491-32 chr8 134568685 134568992 + 2 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -29233 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 230-4 chr10 55723885 55724125 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -96063 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 361-23 chr20 50492773 50493103 + 2 NA Intergenic AluSq|SINE|Alu -17383 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 240-15 chr13 64200100 64200244 + 2 NA Intergenic Intergenic -124161 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 192-11 chr2 5317598 5317756 + 2 NA Intergenic MIR3|SINE|MIR 373441 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 352-24 chr21 45497533 45497734 + 2 NA exon (NM_130444, exon 31 of 42) exon (NM_130444, exon 31 of 42) 19367 NR_106873 102465489 NR_106873 ENSG00000275167 MIR6815 hsa-mir-6815 microRNA 6815 ncRNA 372-32 chr4 122187894 122188198 + 2 NA exon (NM_015312, exon 7 of 84) exon (NM_015312, exon 7 of 84) 17443 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 570-13 chr15 70857796 70858285 + 2 NA intron (NM_001284357, intron 1 of 16) intron (NM_001284357, intron 1 of 16) -3883 NM_197958 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 252-8 chr14 69299786 69299962 + 2 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 39716 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 224.5-34 chr9 87261723 87261864 + 2 NA Intergenic L1MA8|LINE|L1 113149 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 344-5 chr10 36111375 36111767 + 2 NA Intergenic Intergenic 333269 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 350-32 chr6 7870211 7870499 + 2 NA intron (NM_001718, intron 4 of 6) intron (NM_001718, intron 4 of 6) 39722 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 284.5-40 chr7 142029059 142029279 + 2 NA intron (NM_004668, intron 10 of 47) AluSx3|SINE|Alu 33290 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 447-35 chrX 123722655 123723030 + 2 NA intron (NM_001081550, intron 1 of 38) L1ME3B|LINE|L1 10210 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 328-9 chr12 10194956 10195190 + 2 NA Intergenic L2|LINE|L2 16041 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 439.5-28 chr7 73696173 73696727 + 2 NA intron (NR_037776, intron 10 of 11) intron (NR_037776, intron 10 of 11) 12853 NR_037776 114049 Hs.647063 NM_017528 ENSG00000071462 BUD23 HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22 BUD23 rRNA methyltransferase and ribosome maturation factor protein-coding 360-23 chr2 184492729 184492969 + 2 NA Intergenic Intergenic -105680 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 230-12 chr15 84038451 84038730 + 2 NA 3' UTR (NM_001301110, exon 30 of 30) 3' UTR (NM_001301110, exon 30 of 30) -41597 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 380.5-22 chr4 105950986 105951362 + 2 NA intron (NM_001184692, intron 8 of 10) intron (NM_001184692, intron 8 of 10) 55703 NM_001033047 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 165.5-6 chr11 44046968 44047187 + 2 NA promoter-TSS (NM_001363113) promoter-TSS (NM_001363113) -904 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 595-6 chr17 53003320 53003774 + 2 NA Intergenic L1MA1|LINE|L1 18042 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 307.5-11 chr15 26223295 26223483 + 2 NA Intergenic Intergenic 107576 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 203.5-35 chr9 72202406 72202638 + 2 NA intron (NM_001242506, intron 3 of 14) intron (NM_001242506, intron 3 of 14) 53082 NM_001351572 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 195.5-10 chr14 46484740 46484883 + 2 NA intron (NR_102700, intron 1 of 1) Tigger8|DNA|TcMar-Tigger 13452 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 393.5-8 chr14 68000943 68001285 + 2 NA intron (NM_133509, intron 7 of 10) L1M5|LINE|L1 177522 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 394.5-10 chr16 85583694 85583951 + 2 NA Intergenic Intergenic -27587 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 307 chr1 54225175 54225451 + 2 NA TTS (NM_145716) TTS (NM_145716) -11130 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 235-9 chr13 29306770 29306944 + 2 NA intron (NM_001033602, intron 4 of 13) intron (NM_001033602, intron 4 of 13) -121803 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 449.5-16 chr8 65607353 65607819 + 2 NA intron (NM_001286702, intron 3 of 5) L2a|LINE|L2 26591 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 326-27 chr22 49967613 49967867 + 2 NA Intergenic Intergenic 4874 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 156-5 chr11 35184718 35184863 + 2 NA intron (NM_001001389, intron 3 of 16) intron (NM_001001389, intron 3 of 16) 21840 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 352.5-12 chr17 51921050 51921336 + 2 NA intron (NM_001082533, intron 4 of 9) L3|LINE|CR1 237521 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 263-26 chr8 134789722 134789941 + 2 NA Intergenic Intergenic 10776 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 313-23 chr3 23158454 23158832 + 2 NA Intergenic Intergenic 43935 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 314.5-11 chr15 48994399 48994661 + 2 NA intron (NM_001193489, intron 17 of 17) L2c|LINE|L2 -30611 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 304-31 chr5 38717638 38717815 + 2 NA intron (NR_104631, intron 1 of 4) AluSx|SINE|Alu 2547 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 336-29 chr2 40079486 40079881 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 162049 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 454.5-13 chr21 15861188 15861451 + 2 NA intron (NM_001283042, intron 19 of 24) intron (NM_001283042, intron 19 of 24) 131337 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 522-19 chr2 155480739 155481125 + 2 NA Intergenic MIR|SINE|MIR 773999 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 219-3 chr1 175311820 175312022 + 2 NA Intergenic Intergenic -118934 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 206-14 chr3 83270296 83270431 + 2 NA Intergenic L1PA16|LINE|L1 1284221 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 146-8 chr22 38513152 38513229 + 2 NA Intergenic Intergenic -6879 NM_001098504 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 227-11 chr11 86499041 86499170 + 2 NA intron (NM_001014811, intron 4 of 13) L2a|LINE|L2 124218 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 391.5-37 chr8 84348615 84348926 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -66714 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 304-13 chr17 56086749 56087002 + 2 NA Intergenic MIRb|SINE|MIR -66600 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 602-8 chr12 94524057 94524402 + 2 NA Intergenic HAL1M8|LINE|L1 -37560 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 281.5-3 chr10 115883669 115883868 + 2 NA intron (NM_207303, intron 28 of 28) L1ME3|LINE|L1 311021 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 440.5-7 chr11 89487119 89487466 + 2 NA intron (NM_001291929, intron 1 of 16) intron (NM_001291929, intron 1 of 16) 3468 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 448-20 chr2 117225491 117225866 + 2 NA Intergenic L1PB2|LINE|L1 -589013 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 277-32 chr3 171938790 171939003 + 2 NA Intergenic AluSx|SINE|Alu -38156 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 542-14 chr2 182224356 182224712 + 2 NA intron (NM_005019, intron 6 of 14) intron (NM_005019, intron 6 of 14) 17529 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 487-7 chr10 86735128 86735420 + 2 NA 3' UTR (NM_001171610, exon 14 of 14) 3' UTR (NM_001171610, exon 14 of 14) -21365 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 323.5-12 chr17 35018789 35018967 + 2 NA intron (NR_037713, intron 3 of 6) intron (NR_037713, intron 3 of 6) 38366 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 531-7 chr13 84758979 84759431 + 2 NA Intergenic Intergenic -24449 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 272-16 chr2 100327258 100327552 + 2 NA Intergenic AluY|SINE|Alu -4672 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 786-9 chr6 66583559 66584121 + 2 NA Intergenic (TGTGTA)n|Simple_repeat|Simple_repeat 795961 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 289-31 chr3 185748478 185748803 + 2 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 19264 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 433-13 chr17 60247584 60247897 + 2 NA intron (NM_032582, intron 11 of 33) AluSc8|SINE|Alu -16095 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 438.5 chr12 4163901 4164338 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -109643 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 374-14 chr2 10256579 10256916 + 2 NA Intergenic Intergenic -46157 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 418.5-33 chr9 114549927 114550292 + 2 NA Intergenic Intergenic -37660 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 375.5 chr1 237101615 237101842 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 59544 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 483.5-3 chr12 22958443 22958723 + 2 NA Intergenic L2|LINE|L2 -217053 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 334-24 chr5 13566383 13566598 + 2 NA Intergenic Intergenic 377990 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 207-2 chr10 62775697 62775897 + 2 NA Intergenic Intergenic -28923 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 300.5 chr1 28278635 28278932 + 2 NA intron (NM_031459, intron 8 of 9) intron (NM_031459, intron 8 of 9) 19265 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 212.5-27 chr6 39829928 39830091 + 2 NA intron (NM_015345, intron 1 of 24) L2a|LINE|L2 37012 NM_015345 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 381.5-27 chr9 20451908 20452167 + 2 NA intron (NM_001286691, intron 3 of 10) intron (NM_001286691, intron 3 of 10) -40799 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 304.5-41 chr8 74310063 74310344 + 2 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 11158 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 459-30 chr7 24312984 24313367 + 2 NA Intergenic Intergenic 28985 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 434-30 chr9 96126884 96127259 + 2 NA Intergenic Intergenic -10660 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 277-7 chr10 118095388 118095593 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -48549 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 414-10 chr14 54971209 54971550 + 2 NA intron (NM_007086, intron 16 of 25) AluJb|SINE|Alu 55720 NM_007086 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 435-10 chr14 81925002 81925285 + 2 NA Intergenic Intergenic -182005 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 289.5-36 chr7 47610509 47610653 + 2 NA Intergenic Intergenic -11358 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 220-14 chr18 13867688 13867878 + 2 NA Intergenic Intergenic 43634 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 613-10 chr7 47613354 47613919 + 2 NA Intergenic LTR45B|LTR|ERV1 -8303 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 266-19 chr19 22330036 22330218 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 43686 NM_001242680 100287226 Hs.531629 NM_001242680 ENSG00000196350 ZNF729 - zinc finger protein 729 protein-coding 449 chr1 63366450 63366840 + 2 NA promoter-TSS (NM_013339) promoter-TSS (NM_013339) -982 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 170-14 chr3 196702979 196703094 + 2 NA Intergenic Intergenic 9214 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 276-42 chr7 133411565 133411814 + 2 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 120808 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 373-40 chr8 37301150 37301383 + 2 NA Intergenic Intergenic 192647 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 355.5-3 chr11 46839339 46839567 + 2 NA intron (NM_001008938, intron 1 of 43) intron (NM_001008938, intron 1 of 43) 6827 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 626-19 chr8 52875316 52875889 + 2 NA Intergenic Intergenic -64306 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 252.5-22 chr5 157279120 157279303 + 2 NA intron (NM_014376, intron 1 of 30) MIRb|SINE|MIR 9887 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 336.5-9 chr12 124975937 124976182 + 2 NA intron (NM_032656, intron 5 of 26) MER68|LTR|ERVL 13072 NM_032656 57647 Hs.107382 NM_032656 ENSG00000150990 DHX37 DDX37|Dhr1 DEAH-box helicase 37 protein-coding 218-7 chr13 57187284 57187487 + 2 NA Intergenic Intergenic 20188 NM_001130406 729246 Hs.525056 NM_001130406 ENSG00000227151 PRR20D PRR20|PRR20A|PRR20B|PRR20C|PRR20E proline rich 20D protein-coding 254-32 chr5 92814190 92814360 + 2 NA Intergenic Intergenic 757068 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 266.5 chr1 162182485 162182651 + 2 NA intron (NM_014697, intron 2 of 9) Tigger1|DNA|TcMar-Tigger 25461 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 293-8 chr13 89222855 89223110 + 2 NA intron (NR_131229, intron 1 of 4) L1MD2|LINE|L1 -12309 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 363.5-15 chr2 12050179 12050503 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 43225 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 410.5-15 chr3 82571816 82572259 + 2 NA Intergenic Intergenic 585895 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 257-20 chr19 32749801 32749945 + 2 NA intron (NM_001366102, intron 6 of 32) intron (NM_001366102, intron 6 of 32) 30106 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 590-4 chr13 108605074 108605427 + 2 NA intron (NM_015011, intron 1 of 34) intron (NM_015011, intron 1 of 34) 9345 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 257.5-17 chr17 48852627 48852956 + 2 NA intron (NM_005831, intron 8 of 12) intron (NM_005831, intron 8 of 12) 21756 NM_001261391 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 437-3 chr1 188612834 188613267 + 2 NA Intergenic HERVL-int|LTR|ERVL 1169422 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 260-32 chr7 23433347 23433613 + 2 NA intron (NM_006547, intron 2 of 14) MER33|DNA|hAT-Charlie 37011 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 554.5-11 chr4 111687836 111688306 + 2 NA Intergenic Intergenic -457383 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 412-3 chr1 234110189 234110523 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -103855 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 314-26 chr3 47023334 47023644 + 2 NA intron (NR_146158, intron 19 of 21) intron (NR_146158, intron 19 of 21) 11947 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 440-30 chr5 96434897 96435173 + 2 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -1787 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 265.5-17 chr2 112593502 112593795 + 2 NA Intergenic Intergenic 8794 NM_001304354 84269 Hs.375707 NM_032309 ENSG00000125611 CHCHD5 C2orf9|CHTM1|MIC14|MIX14 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding 399-9 chr12 69737380 69737760 + 2 NA intron (NR_110072, intron 1 of 3) L2c|LINE|L2 980 NR_110072 101928002 Hs.569096 NR_110072 LOC101928002 - uncharacterized LOC101928002 ncRNA 378-18 chr22 27712869 27713226 + 2 NA Intergenic Intergenic 88709 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 317.5-28 chr5 64179909 64180273 + 2 NA intron (NM_001113561, intron 1 of 7) L1ME3Cz|LINE|L1 14248 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 306.5-31 chr5 25955796 25956195 + 2 NA Intergenic Intergenic 765042 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 465-15 chr11 22309433 22309757 + 2 NA Intergenic L1M5|LINE|L1 -28786 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 197-15 chr2 139978373 139978496 + 2 NA Intergenic HAL1|LINE|L1 608251 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 272.5-11 chr14 68523539 68523784 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 105126 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 551-12 chr15 65427279 65427560 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -4472 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 216-6 chr12 78438509 78438673 + 2 NA Intergenic L1MA3|LINE|L1 -78845 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 296-18 chr2 10566619 10566880 + 2 NA Intergenic L2|LINE|L2 117021 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 585.5-4 chr2 95373906 95374344 + 2 NA intron (NM_001034914, intron 1 of 7) MER91A|DNA|hAT-Tip100 27467 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 464-12 chr18 41309220 41309588 + 2 NA Intergenic MER34C2|LTR|ERV1 211273 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 445-28 chr7 42123892 42124250 + 2 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 113138 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 441-34 chr6 36604675 36605033 + 2 NA TTS (NR_036610) TTS (NR_036610) 10492 NM_003017 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 573.5-5 chr3 48177097 48177463 + 2 NA intron (NM_201567, intron 7 of 13) intron (NM_201567, intron 7 of 13) 11137 NM_001789 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 430-28 chr5 45002568 45002979 + 2 NA Intergenic Intergenic 193826 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 354.5-9 chr14 63759808 63760049 + 2 NA Intergenic Intergenic -31863 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 352-40 chr9 37990462 37990804 + 2 NA intron (NM_003028, intron 2 of 5) L1MC4a|LINE|L1 78594 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 459-8 chr18 6843543 6844068 + 2 NA intron (NM_001010000, intron 2 of 16) intron (NM_001010000, intron 2 of 16) 9320 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 379-35 chr5 150491022 150491309 + 2 NA Intergenic L2c|LINE|L2 -5173 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 165-4 chr19 39595908 39596022 + 2 NA Intergenic Intergenic -6559 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 546-13 chr5 80631977 80632422 + 2 NA intron (NM_001290357, intron 4 of 4) intron (NM_001290357, intron 4 of 4) -9675 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 321-3 chr10 18806910 18807202 + 2 NA Intergenic AluJb|SINE|Alu 147625 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 532-8 chr2 133451977 133452441 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 116254 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 518-17 chr5 8611985 8612311 + 2 NA Intergenic L1M3|LINE|L1 151223 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 175-8 chr2 98838171 98838310 + 2 NA exon (NM_207362, exon 3 of 10) exon (NM_207362, exon 3 of 10) -66342 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 319-36 chr6 73614371 73614695 + 2 NA intron (NM_012434, intron 8 of 10) MER21B|LTR|ERVL 39459 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 215.5-25 chr2 235824060 235824247 + 2 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) -306232 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 564.5-14 chr8 130247165 130247663 + 2 NA intron (NM_001362925, intron 3 of 29) MIRb|SINE|MIR 49119 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 230-14 chr18 67011206 67011358 + 2 NA Intergenic Intergenic -70302 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 364-8 chr11 111675054 111675393 + 2 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 72774 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 360-2 chr1 110058277 110058559 + 2 NA Intergenic Intergenic 12254 NM_006492 257 Hs.669953 NM_006492 ENSG00000156150 ALX3 FND|FND1 ALX homeobox 3 protein-coding 335-43 chr4 16987288 16987568 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -88619 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 364-9 chr12 15174316 15174544 + 2 NA intron (NM_032918, intron 2 of 4) L1MB8|LINE|L1 22507 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 287-43 chr8 86768412 86768658 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -24860 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 457-12 chr20 24338960 24339277 + 2 NA Intergenic Intergenic -130081 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 297.5-33 chr8 91268940 91269088 + 2 NA intron (NM_134266, intron 2 of 18) L1MA6|LINE|L1 19695 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 226.5-11 chr17 62598114 62598342 + 2 NA intron (NM_001284363, intron 15 of 19) Tigger19b|DNA|TcMar-Tigger -29442 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 507-21 chr3 184967716 184968015 + 2 NA intron (NM_001009921, intron 38 of 46) L1MB3|LINE|L1 155358 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 588-14 chr15 69230842 69231240 + 2 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) -67871 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 462-37 chr7 46090722 46091116 + 2 NA Intergenic L1PA15|LINE|L1 -169647 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 304.5-35 chr5 34714477 34714800 + 2 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 27079 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 320-8 chr14 56286212 56286536 + 2 NA intron (NM_021255, intron 3 of 5) intron (NM_021255, intron 3 of 5) 167963 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 396-18 chr2 197389899 197390175 + 2 NA Intergenic Intergenic 45056 NM_012433 23451 Hs.632554 NM_012433 ENSG00000115524 SF3B1 Hsh155|MDS|PRP10|PRPF10|SAP155|SF3b155 splicing factor 3b subunit 1 protein-coding 833 chr1 49661970 49662530 + 2 NA intron (NR_136623, intron 2 of 12) L1ME2|LINE|L1 -190165 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 462.5-16 chr3 7957458 7958008 + 2 NA intron (NR_110131, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 58574 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 321.5-18 chr17 70749486 70749660 + 2 NA Intergenic L1ME4a|LINE|L1 452606 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 431-30 chr9 36605888 36606198 + 2 NA intron (NR_046337, intron 7 of 17) intron (NR_046337, intron 7 of 17) 33148 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 380 chr11 103346822 103347127 + 2 NA intron (NM_001377, intron 82 of 88) L1MC5a|LINE|L1 237548 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 498.5-5 chr15 33441990 33442445 + 2 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 131250 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 780-2 chr2 208450416 208451014 + 2 NA intron (NM_005048, intron 7 of 12) intron (NM_005048, intron 7 of 12) 43885 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 167-8 chr2 113975225 113975339 + 2 NA intron (NR_148507, intron 2 of 2) MIR3|SINE|MIR -4287 NR_034128 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 327-44 chr7 145476921 145477121 + 2 NA Intergenic Intergenic -640968 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 437-40 chr8 138532198 138532445 + 2 NA Intergenic LTR37B|LTR|ERV1 -34591 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 390-3 chr13 67089526 67089810 + 2 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 98782 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 242-32 chr8 81313591 81313750 + 2 NA Intergenic Intergenic 33134 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 366.5-7 chr14 29600748 29600931 + 2 NA intron (NM_001330069, intron 14 of 18) intron (NM_001330069, intron 14 of 18) 326257 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 387-8 chr12 14073829 14074377 + 2 NA Intergenic Intergenic -93747 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 316.5-29 chr8 140463981 140464287 + 2 NA Intergenic Intergenic -5555 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 350-5 chr11 83637855 83638038 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 44479 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 180-2 chr11 28185384 28185505 + 2 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 77056 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 299-31 chr7 120288352 120288514 + 2 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 15258 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 487-9 chr10 107052652 107053048 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 111856 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 237.5-28 chr9 81334350 81334524 + 2 NA Intergenic Intergenic 355098 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 639-4 chr12 39626642 39627274 + 2 NA intron (NM_001031748, intron 1 of 12) intron (NM_001031748, intron 1 of 12) 775 NR_135051 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 310-40 chr8 70574741 70574941 + 2 NA 3' UTR (NM_001317805, exon 11 of 11) 3' UTR (NM_001317805, exon 11 of 11) 32828 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 660-14 chr6 45379022 45379479 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -1316 NM_001350327 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 427.5-9 chr14 56886311 56886575 + 2 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 73285 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 373-7 chr11 44061964 44062278 + 2 NA Intergenic L1M5|LINE|L1 -4149 NM_032592 84680 Hs.126706 NM_032592 ENSG00000110455 ACCS ACS|PHACS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) protein-coding 453-4 chr10 15423058 15423312 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -51896 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 306-35 chr8 132686458 132686735 + 2 NA Intergenic L2a|LINE|L2 -11051 NM_001321962 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 253-36 chr8 130444032 130444288 + 2 NA promoter-TSS (NM_001362926) promoter-TSS (NM_001362926) -486 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 263-6 chr12 7945824 7945983 + 2 NA Intergenic Intergenic -9716 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 289-12 chr12 76482764 76483003 + 2 NA intron (NM_020841, intron 2 of 23) intron (NM_020841, intron 2 of 23) -59598 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 420-18 chr2 70647552 70647916 + 2 NA Intergenic MIR|SINE|MIR -93908 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 329.5-11 chr2 137269031 137269464 + 2 NA intron (NM_001316349, intron 10 of 27) intron (NM_001316349, intron 10 of 27) 503702 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 399.5-10 chr2 161907934 161908299 + 2 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 166099 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 265.5-39 chr7 41793998 41794236 + 2 NA Intergenic Intergenic -91027 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 590.5-10 chr17 41938294 41938706 + 2 NA intron (NR_146621, intron 5 of 9) intron (NR_146621, intron 5 of 9) 7883 NR_146622 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 - tetratricopeptide repeat domain 25 protein-coding 335.5-21 chr2 170658518 170658743 + 2 NA Intergenic L1ME3B|LINE|L1 55937 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 474.5-2 chr1 67446823 67447060 + 2 NA Intergenic MIR|SINE|MIR -16539 NM_001018069 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 539.5-14 chr2 197321643 197322035 + 2 NA Intergenic AluJb|SINE|Alu -11059 NM_001195144 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 415 chr1 86927791 86928163 + 2 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 13342 NM_001134492 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 443-13 chr18 71745140 71745716 + 2 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 36798 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 465-33 chr8 24707784 24708144 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -159346 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 287-16 chr17 68509716 68509896 + 2 NA intron (NM_001278433, intron 1 of 10) intron (NM_001278433, intron 1 of 10) -1974 NM_212471 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 288.5-36 chr5 176808503 176808656 + 2 NA Intergenic AluSx1|SINE|Alu -1980 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 netrin receptor A protein-coding 325.5-10 chr14 67192106 67192369 + 2 NA intron (NM_173526, intron 1 of 8) intron (NM_173526, intron 1 of 8) 2797 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 258.5-13 chr21 18206634 18206863 + 2 NA intron (NM_001204178, intron 2 of 5) L1M1|LINE|L1 -38085 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 377-7 chr12 41368818 41369110 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -68775 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 431-27 chr7 50795943 50796236 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -2636 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 388-18 chr19 53008755 53009037 + 2 NA Intergenic MER50-int|LTR|ERV1 -5195 NM_152473 147664 Hs.44329 NM_152473 ENSG00000269526 ERVV-1 ENVV1|HERV-V1 endogenous retrovirus group V member 1, envelope protein-coding 343.5-29 chr5 11404634 11404937 + 2 NA intron (NM_001288715, intron 4 of 20) AluSz|SINE|Alu 184132 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 403-12 chr12 29948597 29948878 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -163978 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 434-13 chr3 106245755 106246156 + 2 NA Intergenic MIRc|SINE|MIR -376554 NM_001321790 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 276-45 chrX 19027013 19027230 + 2 NA intron (NM_001184833, intron 10 of 27) intron (NM_001184833, intron 10 of 27) -43007 NM_000292 5256 Hs.54941 NM_000292 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase regulatory subunit alpha 2 protein-coding 387.5-18 chr3 154895478 154895877 + 2 NA Intergenic L1PA7|LINE|L1 -128447 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 375.5-28 chrX 146307795 146307982 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -280016 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 220-15 chr2 11379470 11379602 + 2 NA Intergenic AluJr|SINE|Alu -14445 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 426-6 chr12 28130166 28130517 + 2 NA Intergenic MIRb|SINE|MIR -60115 NM_001352082 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 305-23 chr2 193643025 193643362 + 2 NA Intergenic L1M3a|LINE|L1 -701076 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 218-2 chr1 245005475 245005686 + 2 NA intron (NM_001290327, intron 2 of 7) AluSz|SINE|Alu -34711 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 150.5-17 chr4 30432726 30432888 + 2 NA Intergenic Intergenic -287562 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 310.5-23 chr2 112771956 112772204 + 2 NA Intergenic Intergenic -7471 NM_152515 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 567-9 chr2 14134938 14135496 + 2 NA Intergenic Intergenic 265741 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 381.5-4 chr13 96780930 96781201 + 2 NA intron (NM_153456, intron 1 of 1) MIRb|SINE|MIR 203107 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 379.5-23 chr8 125265009 125265198 + 2 NA intron (NM_001349486, intron 5 of 7) MER96B|DNA|hAT-Tip100 -165255 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 266-8 chr12 49562342 49562512 + 2 NA intron (NM_001012300, intron 7 of 13) intron (NM_001012300, intron 7 of 13) 4012 NM_001012300 10445 Hs.25313 NM_006337 ENSG00000187778 MCRS1 ICP22BP|INO80Q|MCRS2|MSP58|P78 microspherule protein 1 protein-coding 519.5-5 chr2 9688415 9688868 + 2 NA Intergenic AluSz|SINE|Alu -57644 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 482-5 chr12 87232699 87233000 + 2 NA Intergenic Intergenic -97890 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 459.5-22 chr9 81073008 81073497 + 2 NA Intergenic Intergenic 616283 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 348-20 chr19 52934345 52934719 + 2 NA intron (NM_001202473, intron 3 of 3) AluSp|SINE|Alu 8062 NR_037805 399669 Hs.745445 NM_203307 ENSG00000213801 ZNF321P ZNF321 zinc finger protein 321, pseudogene pseudo 342-30 chr6 16171813 16172010 + 2 NA Intergenic Intergenic 30355 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 322.5-21 chr4 44677656 44677940 + 2 NA promoter-TSS (NM_021927) promoter-TSS (NM_021927) -597 NM_001345868 60558 Hs.546419 NM_021927 ENSG00000151806 GUF1 EF-4|EF4|EIEE40 GUF1 homolog, GTPase protein-coding 531-10 chr15 80464174 80464513 + 2 NA intron (NM_014862, intron 3 of 18) MIRc|SINE|MIR 59961 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 285-24 chr6 57205726 57205876 + 2 NA intron (NM_001278667, intron 3 of 6) intron (NM_001278667, intron 3 of 6) 15660 NM_001278668 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 318-40 chr7 1134995 1135172 + 2 NA intron (NM_001134396, intron 1 of 4) L2a|LINE|L2 3164 NM_001318252 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 548-5 chr11 122103669 122104072 + 2 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) -1641 NR_137190 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 453.5-19 chr8 105989464 105989970 + 2 NA intron (NR_125797, intron 1 of 4) MER67D|LTR|ERV1 70786 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 295.5-25 chr5 55982674 55982899 + 2 NA non-coding (NR_120480, exon 2 of 18) non-coding (NR_120480, exon 2 of 18) 12177 NM_175767 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 192.5-16 chr2 151547645 151547783 + 2 NA exon (NM_004543, exon 104 of 149) exon (NM_004543, exon 104 of 149) 137812 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 559 chr10 13216699 13217249 + 2 NA promoter-TSS (NR_004394).2 promoter-TSS (NR_004394).2 -295 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 549.5 chr1 62543109 62543561 + 2 NA intron (NM_001367561, intron 24 of 49) A-rich|Low_complexity|Low_complexity -54185 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 565-16 chr9 15514089 15514645 + 2 NA Intergenic Intergenic -3348 NM_001128217 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 231.5-4 chr14 40749694 40749902 + 2 NA Intergenic Intergenic -204913 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 473-9 chr17 51771829 51772129 + 2 NA intron (NM_001082533, intron 4 of 9) MIRc|SINE|MIR 336552 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 375-7 chr12 63108314 63108560 + 2 NA Intergenic L2a|LINE|L2 44373 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 357-39 chr7 16650025 16650284 + 2 NA intron (NM_001362718, intron 1 of 10) intron (NM_001362718, intron 1 of 10) 3973 NM_014038 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 367-32 chr7 68409864 68410108 + 2 NA Intergenic Intergenic 389733 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 525.5-9 chr22 35202579 35202894 + 2 NA intron (NR_126356, intron 1 of 5) L3|LINE|CR1 28320 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 311.5-17 chr12 27058522 27058805 + 2 NA Intergenic AluJb|SINE|Alu 23859 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 181-9 chr20 12958636 12958828 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -6213 NR_109868 101929486 Hs.548761 NR_109868 ENSG00000233048 LINC01722 - long intergenic non-protein coding RNA 1722 ncRNA 446.5-2 chr10 121537644 121538071 + 2 NA intron (NR_073009, intron 4 of 16) intron (NR_073009, intron 4 of 16) -6543 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 279-35 chr8 122194702 122194918 + 2 NA Intergenic Intergenic 373834 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 419.5-2 chr1 248073892 248074101 + 2 NA intron (NM_001304535, intron 1 of 1) L1M5|LINE|L1 13314 NM_001004687 391192 Hs.690412 NM_001004687 ENSG00000198128 OR2L3 - olfactory receptor family 2 subfamily L member 3 protein-coding 403-21 chr19 35999777 36000114 + 2 NA Intergenic Intergenic 4757 NM_001042631 644096 Hs.356460 NM_001042631 ENSG00000205138 SDHAF1 LYRM8 succinate dehydrogenase complex assembly factor 1 protein-coding 205-30 chr9 32605412 32605574 + 2 NA Intergenic Intergenic 30176 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 267-14 chr16 66670807 66670987 + 2 NA intron (NM_181521, intron 1 of 3) L1ME4a|LINE|L1 25846 NM_181521 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 743.5-4 chr8 112069045 112069589 + 2 NA Intergenic L1MEd|LINE|L1 -574176 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 557-24 chr8 123490519 123490846 + 2 NA Intergenic Intergenic 41461 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 240-5 chr1 238845843 238846028 + 2 NA Intergenic L1MC4a|LINE|L1 -359918 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 652-2 chr1 202975358 202975735 + 2 NA Intergenic HAL1|LINE|L1 -8289 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 465-11 chr10 91573324 91573690 + 2 NA intron (NR_024467, intron 1 of 4) MLT1I|LTR|ERVL-MaLR 37953 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 166-14 chr8 82088476 82088562 + 2 NA Intergenic Intergenic -246233 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 310-41 chr8 81551509 81551777 + 2 NA Intergenic Intergenic -20253 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 128.5-6 chr10 122408740 122408883 + 2 NA intron (NM_001330178, intron 6 of 13) intron (NM_001330178, intron 6 of 13) -8154 NR_037506 100500866 NR_037506 ENSG00000265442 MIR3941 - microRNA 3941 ncRNA 545.5-15 chr8 91983918 91984317 + 2 NA intron (NM_004349, intron 8 of 10) intron (NM_004349, intron 8 of 10) 33563 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 459.5-13 chr20 41214970 41215383 + 2 NA intron (NM_015035, intron 2 of 3) AluSz|SINE|Alu 46153 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 315-3 chr1 105165719 105165915 + 2 NA Intergenic Intergenic 453118 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 175-11 chr22 30090071 30090192 + 2 NA intron (NM_001329457, intron 2 of 11) AluJb|SINE|Alu 9667 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 383.5-5 chr11 84123202 84123417 + 2 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 149971 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 278-18 chr22 27853769 27854003 + 2 NA intron (NM_001284277, intron 10 of 10) intron (NM_001284277, intron 10 of 10) -52130 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 604-13 chr2 123055117 123055605 + 2 NA Intergenic L1M4c|LINE|L1 18120 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 471-28 chr7 105022731 105023235 + 2 NA intron (NM_182931, intron 1 of 26) intron (NM_182931, intron 1 of 26) 8778 NM_182931 55904 Hs.592262 NM_018682 ENSG00000005483 KMT2E HDCMC04P|MLL5|NKp44L lysine methyltransferase 2E protein-coding 287-25 chr3 65192131 65192343 + 2 NA Intergenic Intergenic -504237 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 444-18 chr3 27336563 27336901 + 2 NA intron (NM_152534, intron 6 of 38) L1M2|LINE|L1 32651 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 252-19 chr3 122232052 122232216 + 2 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 47807 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 312.5-31 chr7 20334140 20334370 + 2 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -2493 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 682.5-15 chr9 24874689 24875226 + 2 NA Intergenic L1MC1|LINE|L1 -329060 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 580.5-2 chr15 80033446 80033872 + 2 NA Intergenic Intergenic -25909 NM_001242912 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 239-12 chr14 62647918 62648047 + 2 NA Intergenic Intergenic 397476 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 461-29 chr6 169091620 169091999 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 24023 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 240-18 chr15 88385477 88385670 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 81815 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 216-23 chr5 116496113 116496237 + 2 NA intron (NM_001300780, intron 5 of 19) intron (NM_001300780, intron 5 of 19) 48677 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 389.5-25 chr4 147941259 147941504 + 2 NA intron (NM_024605, intron 14 of 22) intron (NM_024605, intron 14 of 22) 158786 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 327-30 chr20 55652693 55653049 + 2 NA Intergenic L1MEi|LINE|L1 -225674 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 208-14 chr20 18637593 18637753 + 2 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 49619 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 186-25 chr5 106504365 106504499 + 2 NA Intergenic L1MA7|LINE|L1 506582 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 151.5-8 chr15 56345003 56345144 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -20351 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 339-3 chr10 71395649 71396079 + 2 NA Intergenic MIRb|SINE|MIR -1056 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 473 chr1 113541398 113541768 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 151068 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 436-25 chr3 125001581 125001815 + 2 NA intron (NM_020733, intron 11 of 16) intron (NM_020733, intron 11 of 16) 54299 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 504.5-12 chr9 103112396 103112807 + 2 NA Intergenic Intergenic 117268 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 449-16 chr2 59118866 59119377 + 2 NA Intergenic Intergenic -98587 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 437-41 chr9 35358331 35358591 + 2 NA intron (NM_001371187, intron 2 of 32) L1MB3|LINE|L1 16565 NM_001371187 204 chr1 52286083 52286315 + 2 NA intron (NM_007324, intron 9 of 17) intron (NM_007324, intron 9 of 17) 80006 NM_001330585 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 423.5-17 chr2 44946741 44947025 + 2 NA TTS (NM_005413) TTS (NM_005413) -5005 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 306-28 chr6 119773110 119773356 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 223425 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 468.5-4 chr14 49233108 49233507 + 2 NA Intergenic L1PA16|LINE|L1 353073 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 451.5-7 chr12 123166194 123166419 + 2 NA intron (NR_103517, intron 17 of 23) AluJo|SINE|Alu -55817 NM_001300801 57605 Hs.272759 NM_020845 ENSG00000090975 PITPNM2 NIR-3|NIR3|RDGB2|RDGBA2 phosphatidylinositol transfer protein membrane associated 2 protein-coding 643-13 chr4 117588834 117589457 + 2 NA intron (NR_125757, intron 2 of 3) MamGypsy2-I|LTR|Gypsy 160747 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 355-6 chr12 4072670 4073007 + 2 NA Intergenic Intergenic -199390 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 220-26 chr5 54839686 54839812 + 2 NA Intergenic Intergenic -95491 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 385.5-19 chr18 4626538 4626792 + 2 NA Intergenic L1M5|LINE|L1 -171358 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 151-2 chr12 24842604 24842687 + 2 NA intron (NM_001178091, intron 5 of 9) MIR|SINE|MIR 59577 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 284-35 chr8 125897113 125897349 + 2 NA Intergenic Intergenic 53966 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 282-16 chr2 66321534 66321694 + 2 NA Intergenic L1MB5|LINE|L1 36714 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 250-24 chr20 39455301 39455508 + 2 NA Intergenic L1MEj|LINE|L1 -230656 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 287.5-17 chr20 52377063 52377232 + 2 NA Intergenic L1MC4a|LINE|L1 -185162 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 306-5 chr13 29409943 29410180 + 2 NA intron (NM_001033602, intron 6 of 13) L1MC4a|LINE|L1 -18599 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 217-25 chr7 129677682 129677855 + 2 NA intron (NM_005011, intron 4 of 10) intron (NM_005011, intron 4 of 10) 47690 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 280-40 chrX 20152290 20152482 + 2 NA 3' UTR (NM_004586, exon 22 of 22) 3' UTR (NM_004586, exon 22 of 22) -10548 NM_001412 1964 Hs.522590 NM_001412 ENSG00000173674 EIF1AX EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C eukaryotic translation initiation factor 1A X-linked protein-coding 670-6 chr17 32170761 32171193 + 2 NA intron (NM_001288755, intron 1 of 18) intron (NM_001288755, intron 1 of 18) -19406 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 226-18 chr5 35139740 35139915 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -21705 NR_037910 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 305-37 chr4 53810788 53811026 + 2 NA Intergenic Intergenic 115006 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 503.5 chr1 198283672 198284039 + 2 NA intron (NM_133494, intron 7 of 9) Charlie9|DNA|hAT-Charlie 126857 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 221.5-11 chr16 26997807 26997999 + 2 NA Intergenic Intergenic -69024 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 315.5-38 chr8 86156187 86156475 + 2 NA Intergenic Intergenic 57421 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 317.5-8 chr13 41003484 41003767 + 2 NA intron (NM_001370329, intron 1 of 9) intron (NM_001370329, intron 1 of 9) 15691 NM_001370332 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 273-7 chr12 55913254 55913471 + 2 NA intron (NM_032345, intron 1 of 2) intron (NM_032345, intron 1 of 2) 13763 NM_001143853 84305 Hs.505687 NM_032345 ENSG00000170473 PYM1 PYM|WIBG PYM homolog 1, exon junction complex associated factor protein-coding 417.5-12 chr3 38481238 38481758 + 2 NA intron (NM_001106, intron 8 of 10) intron (NM_001106, intron 8 of 10) -14774 NM_001145464 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 243-29 chr6 39558219 39558357 + 2 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -126898 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 414 chr1 12680661 12681171 + 2 NA Intergenic Intergenic -35194 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 332.5-12 chr3 114384970 114385258 + 2 NA intron (NM_001348800, intron 8 of 11) intron (NM_001348800, intron 8 of 11) -1472 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 724.5-8 chr8 71522082 71522562 + 2 NA intron (NM_001370334, intron 2 of 19) L3b|LINE|CR1 25382 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 243.5-26 chr4 40522558 40522765 + 2 NA intron (NM_001098634, intron 2 of 6) Charlie1|DNA|hAT-Charlie -6676 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 251-10 chr15 43425217 43425452 + 2 NA intron (NM_001355001, intron 19 of 28) intron (NM_001355001, intron 19 of 28) 54233 NM_014444 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 416.5-20 chr6 74981319 74981554 + 2 NA Intergenic Intergenic 147346 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 450.5-10 chr20 50994177 50994442 + 2 NA Intergenic Intergenic 28798 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 460.5-12 chr19 29320021 29320302 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -107010 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 346-14 chr12 11768567 11768892 + 2 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 118875 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 664-4 chr2 150095068 150095723 + 2 NA Intergenic Intergenic 161612 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 287.5-3 chr1 59600329 59600511 + 2 NA intron (NM_001350794, intron 8 of 14) intron (NM_001350794, intron 8 of 14) 84790 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 509-16 chr4 84192882 84193183 + 2 NA intron (NR_125909, intron 5 of 8) MLT1H|LTR|ERVL-MaLR 106137 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 317-2 chr1 95674417 95674662 + 2 NA Intergenic Intergenic 164423 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 320-2 chr1 199970294 199970556 + 2 NA Intergenic Intergenic -57285 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 615.5-4 chr2 196026454 196026905 + 2 NA intron (NM_018897, intron 7 of 64) intron (NM_018897, intron 7 of 64) 42158 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 332.5-3 chr1 196865684 196865975 + 2 NA Intergenic L1MD|LINE|L1 -22223 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 422-3 chr10 75053054 75053324 + 2 NA intron (NM_001003892, intron 1 of 2) intron (NM_001003892, intron 1 of 2) 5394 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 396-5 chr12 40466387 40466670 + 2 NA intron (NM_173600, intron 51 of 173) intron (NM_173600, intron 51 of 173) 73134 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 296.5-9 chr15 97410342 97410634 + 2 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 111323 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 326.5-37 chr8 109455760 109456046 + 2 NA intron (NM_177531, intron 45 of 77) intron (NM_177531, intron 45 of 77) -83797 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 412.5-32 chr9 91645091 91645440 + 2 NA Intergenic Intergenic -8920 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 443-14 chr2 29815408 29815739 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 106013 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 254-19 chr21 26265698 26265948 + 2 NA Intergenic Intergenic -94695 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 267-49 chr8 97142535 97142726 + 2 NA intron (NM_016134, intron 7 of 7) MLT1J|LTR|ERVL-MaLR 135298 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 823.5-3 chr4 49143964 49144851 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 157765 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 443-34 chr7 51179183 51179533 + 2 NA intron (NM_015198, intron 5 of 12) AluSx|SINE|Alu 137451 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 546.5-4 chr19 30265848 30266390 + 2 NA Intergenic AluJr|SINE|Alu -106265 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 516-30 chr8 105069977 105070284 + 2 NA Intergenic Intergenic -248308 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 349-20 chr2 74221469 74221776 + 2 NA intron (NM_133478, intron 29 of 30) intron (NM_133478, intron 29 of 30) 23007 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 383-32 chr6 45983892 45984259 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 31785 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 514-5 chr11 97892712 97893019 + 2 NA Intergenic Intergenic -1128084 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 518-5 chr12 9211439 9211754 + 2 NA Intergenic L1M3a|LINE|L1 -3201 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 287.5-14 chr2 16827668 16827958 + 2 NA Intergenic Intergenic -161979 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 267-31 chr3 175514750 175514946 + 2 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 145308 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 448-32 chr8 116467569 116467918 + 2 NA Intergenic Intergenic -142684 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 328-10 chr12 83899755 83899919 + 2 NA Intergenic L1P2|LINE|L1 1012962 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 422.5-24 chr9 123046597 123046996 + 2 NA intron (NM_012197, intron 13 of 25) intron (NM_012197, intron 13 of 25) 13153 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 442-25 chr9 77124807 77125085 + 2 NA Intergenic AluSx|SINE|Alu -52499 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 469-2 chr10 110683315 110683782 + 2 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 39212 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 295-14 chr14 66331841 66332005 + 2 NA Intergenic L1MEg|LINE|L1 -154448 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 244-11 chr17 28056203 28056406 + 2 NA intron (NM_016231, intron 1 of 10) MIR3|SINE|MIR 13627 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 149-2 chr13 59949040 59949161 + 2 NA intron (NM_001258369, intron 17 of 26) LTR54B|LTR|ERV1 -63618 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 330.5-32 chr6 123554348 123554750 + 2 NA intron (NM_001256020, intron 2 of 8) intron (NM_001256020, intron 2 of 8) 82401 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 421-8 chr12 39713405 39713916 + 2 NA intron (NM_001031748, intron 11 of 12) (TA)n|Simple_repeat|Simple_repeat 87477 NR_135051 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 484.5-4 chr10 16251758 16252280 + 2 NA Intergenic L1MCa|LINE|L1 -184924 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 371.5-14 chr18 76819748 76820149 + 2 NA intron (NR_040024, intron 1 of 2) L1MEg|LINE|L1 2347 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 346.5-32 chr8 106744649 106744860 + 2 NA intron (NM_181354, intron 12 of 13) intron (NM_181354, intron 12 of 13) 18647 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 393.5-19 chr6 126869178 126869398 + 2 NA Intergenic LTR88b|LTR|Gypsy? -249383 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 177.5-12 chr12 75763991 75764118 + 2 NA Intergenic Intergenic -252445 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 363.5-26 chr6 33572177 33572603 + 2 NA TTS (NM_001188) TTS (NM_001188) 7886 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 389-7 chr12 44187863 44188076 + 2 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 351888 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 843.5-2 chr4 85667825 85668347 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -54382 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 409.5-14 chr2 171574694 171575060 + 2 NA Intergenic L1MC1|LINE|L1 52403 NM_024843 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 323-28 chr9 130548954 130549120 + 2 NA Intergenic AluJb|SINE|Alu 30457 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 348-29 chr5 168302938 168303250 + 2 NA intron (NM_001161661, intron 1 of 22) MIR|SINE|MIR 11449 NM_001161662 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 267-12 chr15 92963154 92963336 + 2 NA intron (NM_001271, intron 16 of 38) L1MB1|LINE|L1 58846 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 291-18 chr4 84961576 84961837 + 2 NA intron (NM_014991, intron 1 of 67) intron (NM_014991, intron 1 of 67) -3910 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 249-22 chr22 44129847 44129988 + 2 NA intron (NM_001243386, intron 4 of 11) intron (NM_001243386, intron 4 of 11) -43039 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 439.5-6 chr11 32681825 32682136 + 2 NA intron (NM_001008391, intron 7 of 17) intron (NM_001008391, intron 7 of 17) 98149 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 308 chr1 45351683 45351845 + 2 NA intron (NM_007170, intron 5 of 10) intron (NM_007170, intron 5 of 10) -11294 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 342.5-34 chr8 107558257 107558567 + 2 NA Intergenic L2|LINE|L2 -60494 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 209-12 chr17 68495597 68495766 + 2 NA intron (NM_001278433, intron 1 of 10) L2c|LINE|L2 -16099 NM_212471 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 225-7 chr11 113548832 113549034 + 2 NA Intergenic L1MB8|LINE|L1 -73535 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 471.5-13 chr2 142162533 142162828 + 2 NA Intergenic AluSz6|SINE|Alu -30979 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 460.5-17 chr2 186918901 186919473 + 2 NA Intergenic Intergenic -70017 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 453.5-16 chr6 134703333 134703658 + 2 NA Intergenic Intergenic -163490 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 431-22 chr3 194886147 194886442 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -117585 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 204.5-6 chr1 219823278 219823418 + 2 NA Intergenic Intergenic 105303 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 324.5-3 chr1 159860123 159860498 + 2 NA intron (NM_001013661, intron 1 of 6) (ACAGAC)n|Simple_repeat|Simple_repeat 2347 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 330-28 chr22 28623222 28623682 + 2 NA intron (NM_001145418, intron 2 of 22) L1MEa|LINE|L1 56413 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 292-28 chr5 17059057 17059317 + 2 NA Intergenic Intergenic 96805 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 221.5-7 chr12 122825886 122826157 + 2 NA intron (NM_201435, intron 12 of 12) intron (NM_201435, intron 12 of 12) -8727 NM_001303099 9026 Hs.524815 NM_003959 ENSG00000130787 HIP1R HIP12|HIP3|ILWEQ huntingtin interacting protein 1 related protein-coding 300-28 chr7 31063889 31064161 + 2 NA intron (NM_001199637, intron 2 of 13) intron (NM_001199637, intron 2 of 13) 11564 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 457-3 chr12 70506789 70507150 + 2 NA Intergenic MER57A-int|LTR|ERV1 103055 NM_001206971 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 559-4 chr14 65454316 65454681 + 2 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) -16604 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 303.5-10 chr2 117410078 117410474 + 2 NA Intergenic Intergenic -404415 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 375-23 chr4 37184851 37185125 + 2 NA Intergenic Intergenic 57003 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 254-28 chr4 57675280 57675459 + 2 NA Intergenic Intergenic 249497 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 233-6 chr10 78239636 78239813 + 2 NA Intergenic L1ME4a|LINE|L1 -8901 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 265-2 chr1 217618089 217618392 + 2 NA intron (NM_001297754, intron 2 of 5) AluSx|SINE|Alu 12850 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 556.5-9 chr22 41190325 41190675 + 2 NA intron (NR_110514, intron 2 of 2) AluSq2|SINE|Alu 7001 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 272-17 chr2 144867634 144867928 + 2 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 199814 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 497-5 chr14 87515355 87515655 + 2 NA Intergenic MIRb|SINE|MIR 139789 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 319.5-27 chr5 120220497 120220661 + 2 NA Intergenic Intergenic -243699 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 309.5 chr1 43519071 43519328 + 2 NA Intergenic Intergenic -6838 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 222.5-32 chr8 132525432 132525658 + 2 NA Intergenic Intergenic 35934 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 366.5 chr1 166688425 166688780 + 2 NA Intergenic Intergenic 84686 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 229.5-4 chr10 48489045 48489371 + 2 NA intron (NR_144642, intron 3 of 9) MIRb|SINE|MIR 4442 NM_001256026 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 787.5-8 chr6 167662919 167663414 + 2 NA Intergenic Intergenic 16057 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 387.5-3 chr11 82616073 82616309 + 2 NA Intergenic MER54A|LTR|ERVL 117673 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 590-13 chr6 45319822 45320580 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -8116 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 416-19 chr21 31061035 31061359 + 2 NA Intergenic Intergenic -22721 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 307-22 chr21 35764058 35764257 + 2 NA Intergenic Intergenic 43442 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 628.5-12 chr8 130428871 130429338 + 2 NA intron (NM_001362925, intron 1 of 29) MLT1C|LTR|ERVL-MaLR 14556 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 369 chr1 95329034 95329253 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -10880 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 712-5 chr3 144269430 144269831 + 2 NA Intergenic Intergenic 296549 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 245.5-8 chr13 20614436 20614605 + 2 NA intron (NM_001353573, intron 12 of 23) L1MD1|LINE|L1 47363 NM_001353572 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 508-6 chr15 47629624 47629986 + 2 NA intron (NM_001198999, intron 4 of 19) L1MA4A|LINE|L1 -87700 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 402.5-26 chr5 67953845 67954100 + 2 NA Intergenic L1MEd|LINE|L1 160759 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 318.5-19 chr22 19472269 19472610 + 2 NA intron (NM_001035247, intron 3 of 11) intron (NM_001035247, intron 3 of 11) 6754 NM_005659 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1 UFD1L ubiquitin recognition factor in ER associated degradation 1 protein-coding 174-25 chr5 57765049 57765186 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 114457 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 319.5-15 chr2 180748288 180748506 + 2 NA intron (NR_104324, intron 3 of 4) MIR|SINE|MIR 56293 NR_104321 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 336-32 chr2 181223231 181223491 + 2 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 82291 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 238-10 chr11 75928234 75928439 + 2 NA intron (NM_003369, intron 6 of 14) L2a|LINE|L2 113126 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 467-12 chr18 8850573 8851074 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 133442 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 188.5-30 chrX 78587196 78587308 + 2 NA Intergenic L1MA1|LINE|L1 72076 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 404-25 chr20 45711633 45711976 + 2 NA Intergenic L1MB1|LINE|L1 -6624 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 624.5-9 chr22 45810885 45811464 + 2 NA intron (NM_013236, intron 10 of 11) L1M5|LINE|L1 50650 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 524.5-7 chr16 61529696 61530201 + 2 NA Intergenic L2a|LINE|L2 -474182 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 360-39 chr5 60012935 60013424 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -119453 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 553.5-15 chr5 143198939 143199342 + 2 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) 6640 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 467.5-7 chr17 63753999 63754277 + 2 NA intron (NM_020198, intron 9 of 12) intron (NM_020198, intron 9 of 12) -12152 NM_001363788 92335 Hs.514402 NM_153335 ENSG00000266173 STRADA LYK5|NY-BR-96|PMSE|STRAD|STRAD alpha|Stlk STE20 related adaptor alpha protein-coding 313.5 chr1 39442515 39442691 + 2 NA intron (NM_012090, intron 72 of 92) intron (NM_012090, intron 72 of 92) 33530 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 265-26 chr3 5238497 5238735 + 2 NA Intergenic Intergenic 11639 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 292.5-16 chr2 95364793 95365074 + 2 NA intron (NM_001034914, intron 1 of 7) AluJb|SINE|Alu 18275 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 289.5-24 chr2 167228070 167228242 + 2 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 40784 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 156.5-10 chr2 28373935 28374063 + 2 NA Intergenic Intergenic -18859 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 504-23 chr7 42642560 42643014 + 2 NA Intergenic MIR3|SINE|MIR 63660 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 305-26 chr20 50824743 50824985 + 2 NA intron (NM_017843, intron 2 of 5) MER102c|DNA|hAT-Charlie 29970 NM_017843 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 439-16 chr6 38401666 38401913 + 2 NA intron (NM_052893, intron 7 of 11) MIRb|SINE|MIR -79807 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 329-7 chr12 11605612 11605893 + 2 NA Intergenic Intergenic -44102 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 253-18 chr22 34668642 34668817 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 329187 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 487.5-25 chr5 120250957 120251389 + 2 NA Intergenic Intergenic -213105 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 484-16 chr15 98087514 98087831 + 2 NA intron (NR_120325, intron 1 of 3) L1M4|LINE|L1 1081 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 568-16 chr7 112278120 112278815 + 2 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 71772 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 171.5-35 chrX 63354779 63354864 + 2 NA Intergenic Intergenic -3489 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 349-31 chr5 133006501 133006804 + 2 NA intron (NR_131767, intron 2 of 3) MIR|SINE|MIR 19897 NM_001300817 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 795-4 chr2 170191809 170192249 + 2 NA intron (NM_001083615, intron 1 of 33) L1MC4a|LINE|L1 13882 NM_138995 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 253-23 chr3 124348510 124348846 + 2 NA intron (NM_001024660, intron 10 of 59) L1MB3|LINE|L1 -25654 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 225-8 chr11 130385814 130385996 + 2 NA intron (NR_148980, intron 2 of 6) intron (NR_148980, intron 2 of 6) 42704 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 509-6 chr12 107544403 107544857 + 2 NA intron (NM_001018072, intron 3 of 16) intron (NM_001018072, intron 3 of 16) -36244 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 450-10 chr2 183831089 183831401 + 2 NA Intergenic Intergenic -547730 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 246.5-10 chr14 63783612 63783804 + 2 NA Intergenic L1MC4|LINE|L1 -55643 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 519.5-20 chr8 124088607 124088989 + 2 NA intron (NM_001039112, intron 33 of 40) L1MA3|LINE|L1 -48016 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 311.5-39 chr7 7680859 7681181 + 2 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 37587 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 253-11 chr17 70181113 70181315 + 2 NA Intergenic Intergenic 11679 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 569-2 chr1 198047301 198047866 + 2 NA Intergenic L1M2|LINE|L1 -109415 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 362-21 chr2 155990595 155990811 + 2 NA Intergenic L1PA16|LINE|L1 264228 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 356-10 chr13 79423889 79424133 + 2 NA non-coding (NR_038991, exon 7 of 7) non-coding (NR_038991, exon 7 of 7) 17702 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 266-34 chr5 38439743 38439919 + 2 NA intron (NM_182798, intron 12 of 16) intron (NM_182798, intron 12 of 16) -5715 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 460.5-22 chr4 93963544 93963826 + 2 NA Intergenic Intergenic 134932 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 270-21 chr4 169076093 169076249 + 2 NA Intergenic AluJb|SINE|Alu -65916 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 330-12 chr12 54640925 54641101 + 2 NA Intergenic Intergenic -6118 NM_033277 90070 Hs.307096 NM_033277 ENSG00000135413 LACRT - lacritin protein-coding 251.5 chr1 187082849 187083021 + 2 NA Intergenic Intergenic -9907 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 675.5-5 chr16 66492663 66493179 + 2 NA intron (NM_001197224, intron 4 of 4) intron (NM_001197224, intron 4 of 4) -16519 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 773.5-3 chr7 48682821 48683343 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -241465 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 479-12 chr2 54203152 54203456 + 2 NA intron (NM_138448, intron 3 of 3) L1MB7|LINE|L1 52925 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 243.5-23 chr3 84056185 84056426 + 2 NA Intergenic L1MC1|LINE|L1 813270 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 365-11 chr16 66293369 66293597 + 2 NA Intergenic Intergenic -73208 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 404-7 chr10 10392579 10392968 + 2 NA Intergenic Intergenic 69576 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 427-17 chr2 101907225 101907501 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -76102 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 512.5-9 chr7 52897109 52897542 + 2 NA Intergenic Intergenic -138308 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 218.5-23 chr3 80395997 80396240 + 2 NA Intergenic Intergenic -368779 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 210.5-16 chr3 116848825 116848956 + 2 NA Intergenic Intergenic 1477 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 736.5-3 chr17 82258392 82258966 + 2 NA intron (NM_001363749, intron 2 of 8) L1MC4a|LINE|L1 15021 NM_001893 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 609.5 chr12 22750086 22750393 + 2 NA Intergenic Intergenic 125068 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 369-8 chr10 81091202 81091477 + 2 NA Intergenic L1PA7|LINE|L1 441542 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 464-19 chr5 87299125 87299497 + 2 NA intron (NM_022650, intron 1 of 24) MIRc|SINE|MIR 24317 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 373.5-27 chr8 129658692 129658920 + 2 NA intron (NR_130917, intron 1 of 3) MSTA|LTR|ERVL-MaLR 21433 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 541-15 chr5 105563274 105563609 + 2 NA Intergenic Intergenic 463967 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 397.5-12 chr18 37144440 37144678 + 2 NA intron (NR_136303, intron 8 of 13) AluJb|SINE|Alu -129901 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 412.5-23 chr3 183616105 183616352 + 2 NA Intergenic Intergenic -19395 NM_001349414 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 835-2 chr2 241188239 241188795 + 2 NA promoter-TSS (NM_001370694) promoter-TSS (NM_001370694) -160 NM_001370694 50636 Hs.163909 NM_001001666 ENSG00000146205 ANO7 D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G anoctamin 7 protein-coding 435-43 chr9 112389549 112389870 + 2 NA intron (NR_036651, intron 1 of 9) L1ME3B|LINE|L1 9601 NM_032303 84263 Hs.59486 NM_032303 ENSG00000119471 HSDL2 C9orf99|SDR13C1 hydroxysteroid dehydrogenase like 2 protein-coding 176-4 chr14 62652752 62652918 + 2 NA Intergenic LTR37A|LTR|ERV1 392623 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 211-31 chr9 104023659 104023863 + 2 NA Intergenic Intergenic 24052 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 194.5-35 chr9 95542647 95542814 + 2 NA Intergenic L2b|LINE|L2 -25673 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 434-24 chr7 30960827 30961170 + 2 NA Intergenic AluSx4|SINE|Alu -2955 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 540.5-6 chr4 179125412 179125711 + 2 NA Intergenic Intergenic -1217625 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 551-4 chr1 234976581 234977056 + 2 NA Intergenic Intergenic -12819 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 297.5-29 chr5 6739644 6739956 + 2 NA exon (NM_006999, exon 4 of 13) exon (NM_006999, exon 4 of 13) 26368 NM_001171805 11044 Hs.481542 NM_006999 ENSG00000112941 TENT4A LAK-1|LAK1|PAPD7|POLK|POLS|TRF4|TRF4-1|TRF41|TUTASE5 terminal nucleotidyltransferase 4A protein-coding 419-13 chr17 59899661 59900057 + 2 NA intron (NM_001272044, intron 2 of 15) intron (NM_001272044, intron 2 of 15) 6738 NR_161462 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 387-6 chr11 26083702 26083986 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -105279 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 435-17 chr3 8275177 8275500 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 226320 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 417-31 chr4 87960600 87960880 + 2 NA Intergenic Intergenic -14910 NM_001040060 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 258.5-9 chr19 6901973 6902185 + 2 NA intron (NM_001974, intron 6 of 20) intron (NM_001974, intron 6 of 20) 14500 NM_001256252 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 590-9 chr2 104190618 104191155 + 2 NA Intergenic Intergenic 217446 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 413-39 chr8 84894016 84894260 + 2 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 188211 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 366-5 chr13 36389760 36390011 + 2 NA Intergenic Intergenic -19705 NM_001142294 23111 Hs.440414 NM_015087 ENSG00000133104 SPART SPG20|TAHCCP1 spartin protein-coding 510-25 chr9 95436233 95436682 + 2 NA Intergenic AluJb|SINE|Alu -27152 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 328-31 chr7 17655336 17655627 + 2 NA Intergenic L1MEc|LINE|L1 -96572 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 306-8 chr15 63129874 63130130 + 2 NA 3' UTR (NM_001288585, exon 5 of 5) 3' UTR (NM_001288585, exon 5 of 5) 8141 NM_001288585 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 340.5-26 chr5 57676263 57676674 + 2 NA Intergenic Intergenic 25808 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 293.5-22 chr20 59168378 59168602 + 2 NA Intergenic L1MD1|LINE|L1 -22530 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 412.5-30 chr6 159607281 159607510 + 2 NA Intergenic L1M5|LINE|L1 85846 NM_001024465 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 230-20 chr2 82412417 82412601 + 2 NA Intergenic Intergenic -444294 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 498-19 chr22 35211538 35211924 + 2 NA intron (NR_126356, intron 1 of 5) MLT1L|LTR|ERVL-MaLR 19325 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 455-3 chr1 185164306 185164696 + 2 NA intron (NM_017673, intron 2 of 18) Tigger1|DNA|TcMar-Tigger 7334 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 461-11 chr2 19821197 19821521 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -47495 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 165-15 chr9 83373896 83374049 + 2 NA intron (NM_001244960, intron 2 of 13) MIRb|SINE|MIR -42011 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 696-15 chr6 129210465 129211142 + 2 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 327662 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 576-7 chr19 43467186 43467613 + 2 NA Intergenic L1ME3|LINE|L1 -1791 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 299-21 chr20 52955550 52955782 + 2 NA Intergenic Intergenic -16692 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 547-21 chr8 121888132 121888498 + 2 NA Intergenic L1PA16|LINE|L1 -246875 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 561-13 chr22 21922349 21922912 + 2 NA 3' UTR (NM_014634, exon 8 of 8) 3' UTR (NM_014634, exon 8 of 8) -15607 NR_147620 100286925 Hs.659180 NR_147620 LOC100286925 - uncharacterized LOC100286925 ncRNA 410-22 chr3 191422630 191422986 + 2 NA Intergenic L1PA13|LINE|L1 -2716 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 536.5-8 chr14 22014110 22014390 + 2 NA Intergenic Intergenic -343233 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 384-3 chr10 24596038 24596326 + 2 NA intron (NM_001367447, intron 16 of 24) intron (NM_001367447, intron 16 of 24) 26661 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 175.5-27 chr5 96350318 96350409 + 2 NA intron (NR_130776, intron 3 of 4) MER4A|LTR|ERV1 81796 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 347-13 chr2 70541035 70541261 + 2 NA intron (NM_003236, intron 1 of 5) L1ME4a|LINE|L1 12298 NM_001308158 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 207.5-45 chrX 72324992 72325206 + 2 NA Intergenic L2c|LINE|L2 -17942 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 404-15 chr13 52693497 52693892 + 2 NA 3' UTR (NM_006704, exon 13 of 13) 3' UTR (NM_006704, exon 13 of 13) 40858 NM_001320831 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 359-26 chr2 186218676 186218917 + 2 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -132479 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 412-11 chr17 16065331 16065724 + 2 NA exon (NM_006311, exon 33 of 46) exon (NM_006311, exon 33 of 46) 65703 NM_001271420 54902 Hs.462316 NM_017775 ENSG00000011295 TTC19 2010204O13Rik|MC3DN2 tetratricopeptide repeat domain 19 protein-coding 665-12 chr8 125890801 125891342 + 2 NA Intergenic L1PB4|LINE|L1 60126 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 527-26 chr8 117604836 117605188 + 2 NA Intergenic MIR|SINE|MIR 84299 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 339-14 chr18 72109514 72109714 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -327388 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 573-4 chr14 47055801 47056265 + 2 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 287213 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 273-12 chr14 65700804 65701015 + 2 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 229807 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 305-41 chr5 170986235 170986392 + 2 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 124295 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 432-22 chr5 138167714 138168211 + 2 NA exon (NM_001300962, exon 8 of 20) exon (NM_001300962, exon 8 of 20) 10668 NM_001300961 10902 Hs.519337 NM_006696 ENSG00000112983 BRD8 SMAP|SMAP2|p120 bromodomain containing 8 protein-coding 333.5-2 chr1 173209391 173209643 + 2 NA Intergenic AluJr4|SINE|Alu -2186 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 458.5-10 chr20 34768391 34768847 + 2 NA intron (NM_001242539, intron 2 of 11) intron (NM_001242539, intron 2 of 11) 13785 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 246.5-18 chr2 137735314 137735515 + 2 NA Intergenic L1MB1|LINE|L1 192518 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 266-28 chr21 31853708 31853963 + 2 NA Intergenic Intergenic -19185 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 320-17 chr21 33195953 33196190 + 2 NA Intergenic Intergenic -25835 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 414-7 chr10 90206748 90207066 + 2 NA Intergenic L1ME4a|LINE|L1 -249534 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 220-21 chr3 71023383 71023579 + 2 NA intron (NR_146142, intron 11 of 19) intron (NR_146142, intron 11 of 19) 41443 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 287-15 chr17 59128639 59128871 + 2 NA intron (NM_182620, intron 2 of 3) L1MB7|LINE|L1 9117 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 365-39 chr9 104036975 104037157 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 37357 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 293.5-11 chr15 100317715 100318065 + 2 NA intron (NM_139057, intron 3 of 21) intron (NM_139057, intron 3 of 21) 24085 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 455.5-17 chr5 29891506 29891996 + 2 NA Intergenic L2b|LINE|L2 11191 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 382-29 chr3 37620919 37621145 + 2 NA intron (NM_002207, intron 15 of 27) THE1B|LTR|ERVL-MaLR 168891 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 613-11 chr8 68150037 68150486 + 2 NA intron (NM_024870, intron 34 of 39) ERV3-16A3_I-int|LTR|ERVL -180112 NM_001349477 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 244-9 chr15 67353812 67354030 + 2 NA intron (NM_001031715, intron 6 of 20) L1M5|LINE|L1 -98723 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 130.5-21 chr9 83056006 83056078 + 2 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 7100 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 308-35 chr7 11855116 11855337 + 2 NA Intergenic Intergenic -23028 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 522-37 chr9 78548712 78549050 + 2 NA Intergenic Intergenic 251756 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 291.5-6 chr14 60514084 60514384 + 2 NA Intergenic Intergenic 5088 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 550.5-6 chr12 112773029 112773493 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -18277 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 203-21 chr5 107784780 107784937 + 2 NA Intergenic Intergenic -113921 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 395.5-31 chr7 42488958 42489208 + 2 NA Intergenic Intergenic 217364 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 292-6 chr12 54204108 54204368 + 2 NA Intergenic Intergenic -15244 NM_001351245 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 281-42 chr8 83010550 83010768 + 2 NA Intergenic Intergenic 98555 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 226.5-29 chrX 68272076 68272237 + 2 NA intron (NM_002547, intron 5 of 24) intron (NM_002547, intron 5 of 24) 161339 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 443-18 chr2 100791618 100792028 + 2 NA Intergenic Intergenic -28316 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 177-11 chr2 164857449 164857594 + 2 NA Intergenic AluJo|SINE|Alu -15445 NM_001278460 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 371-30 chr8 83100752 83101163 + 2 NA Intergenic L1ME2|LINE|L1 188853 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 244-23 chr4 49120364 49120636 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 133858 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 331-30 chr20 31072722 31072956 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -184825 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 409.5-18 chr4 64425104 64425457 + 2 NA Intergenic Intergenic -15820 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 506-28 chr7 94014865 94015269 + 2 NA Intergenic Intergenic -10712 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 317-21 chr4 122850782 122851004 + 2 NA intron (NM_001361665, intron 1 of 2) intron (NM_001361665, intron 1 of 2) 24062 NM_001361665 2247 Hs.284244 NM_002006 ENSG00000138685 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 protein-coding 115-2 chr16 74463985 74464057 + 2 NA intron (NR_027264, intron 20 of 26) intron (NR_027264, intron 20 of 26) -42551 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 429-27 chr5 4116802 4117068 + 2 NA Intergenic L1ME3G|LINE|L1 521103 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 371-4 chr14 47866020 47866322 + 2 NA Intergenic Intergenic -71157 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 276.5-28 chr3 174872446 174872637 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 13207 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 318.5-26 chr5 35854930 35855148 + 2 NA Intergenic Intergenic -1852 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 186-32 chrY 11303408 11303503 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1118135 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 173 chr1 240706718 240706815 + 2 NA Intergenic L2c|LINE|L2 -94611 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 254.5-31 chr2 180014752 180014992 + 2 NA Intergenic LTR37-int|LTR|ERV1 -7575 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 387-18 chr2 69901931 69902148 + 2 NA intron (NR_037862, intron 4 of 6) L2b|LINE|L2 8083 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 256-14 chr2 54467853 54468074 + 2 NA intron (NM_003128, intron 1 of 35) L1ME4a|LINE|L1 11636 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 336-48 chr9 76730140 76730424 + 2 NA intron (NM_001308048, intron 6 of 17) Tigger13a|DNA|TcMar-Tigger -34154 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 644.5-3 chr18 5095004 5095418 + 2 NA intron (NR_146900, intron 2 of 3) intron (NR_146900, intron 2 of 3) 14029 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 621-4 chr14 46295299 46295762 + 2 NA intron (NR_102702, intron 3 of 3) L1MA4A|LINE|L1 -175829 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 492.5-12 chr19 49271492 49271738 + 2 NA Intergenic L1M5|LINE|L1 37253 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 209.5 chr1 214011013 214011224 + 2 NA intron (NM_001270616, intron 3 of 4) intron (NM_001270616, intron 3 of 4) 22585 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 392.5-12 chr17 16525901 16526129 + 2 NA Intergenic L1MB5|LINE|L1 -33822 NM_001113567 388341 Hs.25425 NM_207387 ENSG00000181350 LRRC75A C17orf76|FAM211A leucine rich repeat containing 75A protein-coding 325-7 chr16 84610764 84610953 + 2 NA intron (NM_021149, intron 2 of 3) intron (NM_021149, intron 2 of 3) 7220 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 315-21 chr22 24145430 24145929 + 2 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -35808 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 585.5-5 chr5 13194601 13194973 + 2 NA Intergenic Intergenic -161901 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 506-15 chr2 203217132 203217527 + 2 NA exon (NM_001114132, exon 55 of 55) exon (NM_001114132, exon 55 of 55) -21112 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 338.5-2 chr1 152894059 152894385 + 2 NA Intergenic L1ME1|LINE|L1 -14323 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 293-16 chr2 158998795 158999019 + 2 NA intron (NM_001350065, intron 1 of 27) intron (NM_001350065, intron 1 of 27) 30267 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 435.5-21 chr8 117469402 117469769 + 2 NA Intergenic Intergenic -51128 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 350-44 chr9 14779621 14780086 + 2 NA promoter-TSS (NM_001177704) promoter-TSS (NM_001177704) -320 NM_001177704 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 447-10 chr17 71988522 71988949 + 2 NA Intergenic Intergenic 37244 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 345-24 chr2 179177683 179178022 + 2 NA intron (NM_178123, intron 3 of 17) L1MB7|LINE|L1 86980 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 358-18 chr15 41359153 41359436 + 2 NA intron (NM_001243144, intron 5 of 8) intron (NM_001243144, intron 5 of 8) 26413 NM_001243144 51203 Hs.615092 NM_016359 ENSG00000137804 NUSAP1 ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL nucleolar and spindle associated protein 1 protein-coding 437-31 chr2 188575009 188575369 + 2 NA intron (NM_016315, intron 9 of 11) intron (NM_016315, intron 9 of 11) 214934 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 208-4 chr10 30157848 30158011 + 2 NA Intergenic L2|LINE|L2 -42435 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 206-28 chrX 68907305 68907419 + 2 NA Intergenic MIRb|SINE|MIR 78365 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 279-17 chr2 75036741 75036990 + 2 NA Intergenic Intergenic -53947 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 548-12 chr2 142426155 142426587 + 2 NA Intergenic Intergenic -294670 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 690-12 chr7 42004358 42004921 + 2 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 232570 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 294-13 chr13 113150588 113150762 + 2 NA Intergenic Intergenic -7973 NM_003891 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 515-15 chr4 70341607 70342075 + 2 NA Intergenic L2|LINE|L2 6860 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 263.5-4 chr12 28286214 28286345 + 2 NA intron (NM_001352082, intron 4 of 13) L1PA13|LINE|L1 -95541 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 343-32 chr8 91799764 91799975 + 2 NA Intergenic Intergenic 217811 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 443 chr1 26807438 26807665 + 2 NA Intergenic L1MB3|LINE|L1 -19137 NM_032283 84243 Hs.523710 NM_032283 ENSG00000204160 ZDHHC18 DHHC-18|DHHC18 zinc finger DHHC-type containing 18 protein-coding 728.5-5 chr3 185345997 185346458 + 2 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -16909 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 353-23 chr2 173474658 173474843 + 2 NA Intergenic Intergenic 119878 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 334.5-8 chr11 74315645 74316111 + 2 NA intron (NR_120556, intron 3 of 6) L1MC4|LINE|L1 -4238 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 432.5-20 chr8 88636307 88636707 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -309024 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 494.5-13 chr7 34608477 34608784 + 2 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -49588 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 326-29 chr4 168738670 168739002 + 2 NA intron (NM_001166108, intron 10 of 21) intron (NM_001166108, intron 10 of 21) -93259 NM_001367567 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 340.5-9 chr14 71361446 71361667 + 2 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -36781 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 721.5-3 chr16 7561090 7561585 + 2 NA intron (NM_145893, intron 2 of 13) MER58A|DNA|hAT-Charlie 228492 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 379-8 chr1 222956325 222956614 + 2 NA intron (NM_001369594, intron 2 of 7) intron (NM_001369594, intron 2 of 7) 28045 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 424.5-15 chr3 74233085 74233444 + 2 NA Intergenic Intergenic 287876 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 347-15 chr2 207977033 207977252 + 2 NA exon (NM_001080475, exon 3 of 8) exon (NM_001080475, exon 3 of 8) 48385 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 259.5-39 chr6 13061727 13062003 + 2 NA intron (NM_001322308, intron 4 of 13) intron (NM_001322308, intron 4 of 13) 48311 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 230.5-46 chr6 144053988 144054177 + 2 NA intron (NM_001317159, intron 1 of 7) intron (NM_001317159, intron 1 of 7) 1180 NM_001317159 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 272-23 chr3 125316135 125316326 + 2 NA intron (NM_001348436, intron 3 of 8) L1MA1|LINE|L1 41050 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 231-15 chr2 179440860 179441089 + 2 NA Intergenic Intergenic 121614 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 654-11 chr4 55183017 55183537 + 2 NA Intergenic Intergenic -57682 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 316-22 chr20 39460850 39461129 + 2 NA Intergenic LTR79|LTR|ERVL -236241 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 199.5-35 chr8 35917338 35917577 + 2 NA Intergenic Intergenic -207137 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 426.5-18 chr21 42982008 42982341 + 2 NA intron (NM_004571, intron 1 of 10) intron (NM_004571, intron 1 of 10) 7612 NM_004571 5316 Hs.431043 NM_004571 ENSG00000160199 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 423-13 chr16 3500199 3500488 + 2 NA promoter-TSS (NM_001330454) promoter-TSS (NM_001330454) -661 NM_001330454 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 272.5-28 chr3 102670884 102671070 + 2 NA Intergenic LTR40a|LTR|ERVL 235962 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 360.5-24 chr6 166367433 166367699 + 2 NA intron (NM_001270879, intron 1 of 4) intron (NM_001270879, intron 1 of 4) 15374 NM_016098 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 264-16 chr2 69717826 69717972 + 2 NA intron (NM_001320698, intron 2 of 14) intron (NM_001320698, intron 2 of 14) -24235 NM_001365496 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 409-7 chr12 3828950 3829196 + 2 NA intron (NM_020367, intron 2 of 7) intron (NM_020367, intron 2 of 7) 44326 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 607-22 chr6 63489130 63489479 + 2 NA Intergenic Intergenic -82708 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 571.5-12 chr8 132831022 132831423 + 2 NA intron (NM_001277196, intron 13 of 19) L2|LINE|L2 -35736 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 349-15 chr14 64499756 64499972 + 2 NA 5' UTR (NM_001354684, exon 1 of 4) 5' UTR (NM_001354684, exon 1 of 4) 589 NM_001354683 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 313-39 chr9 19178784 19178958 + 2 NA Intergenic AluJb|SINE|Alu -51265 NR_038064 123 Hs.3416 NM_001122 ENSG00000147872 PLIN2 ADFP|ADRP perilipin 2 protein-coding 398.5-19 chr4 156586359 156586685 + 2 NA Intergenic L2c|LINE|L2 385277 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 537.5-5 chr14 69569335 69569823 + 2 NA TTS (NM_001271507) TTS (NM_001271507) 5292 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 379-3 chr1 167525487 167525859 + 2 NA Intergenic Intergenic -7063 NM_198053 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 615.5-10 chr5 72782771 72783177 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR -33617 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 328.5-31 chr6 157828126 157828319 + 2 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 4976 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 305-32 chr3 74853735 74853942 + 2 NA Intergenic Intergenic -332698 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 506-8 chr12 112969398 112969766 + 2 NA intron (NM_006187, intron 14 of 15) intron (NM_006187, intron 14 of 15) -8937 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 635-5 chr10 8119712 8120189 + 2 NA Intergenic Intergenic 65262 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 462.5-20 chr7 3154245 3154673 + 2 NA intron (NR_126024, intron 2 of 3) intron (NR_126024, intron 2 of 3) 4114 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 308-29 chr6 45437669 45437848 + 2 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 15483 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 317.5-14 chr2 73051601 73051851 + 2 NA intron (NM_001330406, intron 2 of 14) MLT1A1|LTR|ERVL-MaLR 7446 NM_001330408 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 231-23 chr6 36052766 36052941 + 2 NA intron (NM_139012, intron 2 of 11) intron (NM_139012, intron 2 of 11) 25045 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 217-17 chr3 25647235 25647345 + 2 NA intron (NM_001330700, intron 1 of 35) intron (NM_001330700, intron 1 of 35) 17082 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 443-33 chr6 117732563 117732992 + 2 NA Intergenic L1ME2|LINE|L1 57308 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 529-5 chr12 57004921 57005245 + 2 NA intron (NM_014830, intron 1 of 1) intron (NM_014830, intron 1 of 1) 1463 NM_014830 9880 Hs.591025 NM_014830 ENSG00000166860 ZBTB39 ZNF922 zinc finger and BTB domain containing 39 protein-coding 380-18 chr5 98716980 98717236 + 2 NA Intergenic Intergenic -51524 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 538-18 chr8 48149818 48150352 + 2 NA Intergenic Intergenic 141654 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 313.5-39 chr7 94232962 94233148 + 2 NA Intergenic Intergenic 159137 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 277.5-32 chr7 86923252 86923464 + 2 NA intron (NM_001291991, intron 9 of 20) L1MA4|LINE|L1 42541 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 267.5-5 chr10 17234575 17234808 + 2 NA intron (NM_003380, intron 5 of 9) intron (NM_003380, intron 5 of 9) -4706 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 463.5-12 chr3 43718506 43718770 + 2 NA non-coding (NR_158560, exon 6 of 6) non-coding (NR_158560, exon 6 of 6) -27044 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 246.5-16 chr18 78010968 78011160 + 2 NA Intergenic MIRb|SINE|MIR -17337 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 297.5-8 chr13 49587283 49587542 + 2 NA Intergenic Intergenic -1829 NM_001352504 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 461.5-13 chr4 31908975 31909351 + 2 NA Intergenic Intergenic -88216 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 471.5 chr1 164512952 164513272 + 2 NA Intergenic AluJb|SINE|Alu -46248 NM_001204963 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 408.5-4 chr10 111933981 111934413 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 249568 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 391.5-4 chr11 67561205 67561613 + 2 NA Intergenic LTR23|LTR|ERV1 -22186 NM_000852 2950 Hs.523836 NM_000852 ENSG00000084207 GSTP1 DFN7|FAEES3|GST3|GSTP|HEL-S-22|PI glutathione S-transferase pi 1 protein-coding 450-8 chr14 61186381 61186686 + 2 NA Intergenic Intergenic 94805 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 602-10 chr16 74087858 74088461 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 127362 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 320-16 chr2 221838420 221838820 + 2 NA Intergenic Intergenic -264418 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 290-8 chr14 45728200 45728359 + 2 NA Intergenic Intergenic -12677 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 285.5-31 chr7 78803402 78803806 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -205384 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 607.5-4 chr13 20348394 20348954 + 2 NA Intergenic Intergenic 85172 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 537.5-3 chr11 68065018 68065471 + 2 NA intron (NM_001277, intron 9 of 11) intron (NM_001277, intron 9 of 11) 20450 NR_106811 102465451 NR_106811 ENSG00000275022 MIR6753 hsa-mir-6753 microRNA 6753 ncRNA 305-6 chr10 57082765 57083005 + 2 NA Intergenic L1ME2z|LINE|L1 221674 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 455-20 chr21 35368586 35368992 + 2 NA Intergenic L2b|LINE|L2 211975 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 352-39 chr8 80591746 80592140 + 2 NA Intergenic Intergenic 105717 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 500-12 chr4 181935543 181935826 + 2 NA Intergenic Intergenic -105711 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 522.5-5 chr12 219707 220061 + 2 NA TTS (NM_016615) TTS (NM_016615) -5727 NM_001122848 6539 Hs.437174 NM_003044 ENSG00000111181 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 member 12 protein-coding 463-19 chr3 24430181 24430677 + 2 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -63658 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 258-19 chr3 118527249 118527483 + 2 NA intron (NR_135547, intron 3 of 3) intron (NR_135547, intron 3 of 3) -114402 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 245-13 chr15 35841767 35841948 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -84999 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 339-35 chr8 55281152 55281346 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 174072 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 267-4 chr10 28334787 28334979 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -31819 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 277-44 chr7 14975071 14975270 + 2 NA promoter-TSS (NM_001350707) promoter-TSS (NM_001350707) -312 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 403.5-15 chr4 46561174 46561433 + 2 NA Intergenic Intergenic -171175 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 464.5-23 chr8 137973106 137973618 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 110183 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 412-16 chr2 54856260 54856612 + 2 NA intron (NM_001039753, intron 10 of 40) intron (NM_001039753, intron 10 of 40) 131424 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 267-35 chr4 96460308 96460481 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 149691 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 433-4 chr10 61438320 61438799 + 2 NA intron (NR_134508, intron 1 of 6) intron (NR_134508, intron 1 of 6) -14080 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 176.5-22 chr4 121433386 121433489 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -52419 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 179-24 chrX 45067200 45067305 + 2 NA intron (NR_111960, intron 15 of 27) intron (NR_111960, intron 15 of 27) 133624 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 397-38 chr9 105423974 105424390 + 2 NA intron (NM_001330731, intron 15 of 15) MER115|DNA|hAT-Tip100 -23852 NM_031919 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 309-43 chr8 129166649 129166896 + 2 NA Intergenic LTR33A|LTR|ERVL 74468 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 267-6 chr12 2257573 2257771 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -12104 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 534-17 chr2 181123819 181124245 + 2 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 195 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 259-15 chr20 52019214 52019404 + 2 NA Intergenic Intergenic 86175 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 449-36 chrX 85733499 85733878 + 2 NA Intergenic L1HS|LINE|L1 -102092 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 345-38 chr7 25202178 25202615 + 2 NA Intergenic L1MEg|LINE|L1 -22042 NM_001371351 273-11 chr14 60517178 60517337 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 8111 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 266-11 chr14 21208560 21208738 + 2 NA TTS (NM_001077443) TTS (NM_001077443) -1749 NR_038971 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 361-15 chr15 70534613 70534902 + 2 NA Intergenic Intergenic -28829 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 548-6 chr18 73853252 73853621 + 2 NA Intergenic Intergenic 294398 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 440-21 chr21 19115112 19115492 + 2 NA Intergenic Intergenic -355490 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 218-21 chr2 219226033 219226201 + 2 NA intron (NM_024085, intron 4 of 14) AluYc|SINE|Alu 3519 NR_104255 79065 Hs.323363 NM_024085 ENSG00000198925 ATG9A APG9L1|MGD3208|mATG9 autophagy related 9A protein-coding 636-20 chr5 173867232 173867708 + 2 NA Intergenic Intergenic -20879 NM_001308189 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 320-3 chr1 241562062 241562264 + 2 NA intron (NM_003679, intron 6 of 14) intron (NM_003679, intron 6 of 14) 29785 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 387.5-8 chr14 77048143 77048662 + 2 NA intron (NR_110554, intron 1 of 3) MIRb|SINE|MIR 7353 NR_110554 283575 Hs.651736 NR_110554 ENSG00000246548 LINC02288 - long intergenic non-protein coding RNA 2288 ncRNA 387-22 chr3 22905293 22905592 + 2 NA Intergenic Intergenic 297136 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 320.5-29 chr6 95501198 95501495 + 2 NA Intergenic Intergenic 76105 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 279-9 chr14 60084543 60084743 + 2 NA Intergenic MIR3|SINE|MIR -7268 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 317.5-31 chr5 122827494 122827665 + 2 NA exon (NM_001278199, exon 14 of 15) exon (NM_001278199, exon 14 of 15) -17870 NR_146145 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 427-5 chr1 115010447 115010784 + 2 NA Intergenic AluSg|SINE|Alu -19209 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 256-20 chr3 138789963 138790206 + 2 NA intron (NM_006219, intron 2 of 23) L1MB3|LINE|L1 44844 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 364-4 chr10 51008192 51008423 + 2 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 17419 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 443-30 chr5 77227491 77227814 + 2 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 16972 NM_001029853 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 213-17 chrX 142007253 142007441 + 2 NA Intergenic L1M8|LINE|L1 103453 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 477-25 chr8 120043142 120043561 + 2 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -81751 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 366.5-11 chr14 79101827 79102105 + 2 NA intron (NR_073547, intron 14 of 20) MLT1C|LTR|ERVL-MaLR -98016 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 183-23 chr8 83781534 83781698 + 2 NA Intergenic Intergenic 377858 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 147-7 chr6 160898842 160898958 + 2 NA Intergenic MIR3|SINE|MIR -92827 NM_001363582 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 218.5-11 chr15 72182569 72182788 + 2 NA intron (NM_001012642, intron 1 of 11) L1MB2|LINE|L1 15109 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 305.5-5 chr11 23576426 23576600 + 2 NA Intergenic L1MD|LINE|L1 -157323 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 377-29 chr7 68944856 68945151 + 2 NA Intergenic Intergenic 652621 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 361-6 chr10 54345289 54345635 + 2 NA intron (NM_001354411, intron 6 of 34) intron (NM_001354411, intron 6 of 34) -140768 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 299-27 chr5 15598518 15598758 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 16364 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 495-15 chr4 76565779 76566200 + 2 NA intron (NM_020859, intron 2 of 10) AluJo|SINE|Alu -7579 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 327.5-23 chr5 124687178 124687442 + 2 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 57802 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 416-29 chrX 103635807 103636146 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 7001 NM_004780 9338 Hs.95243 NM_004780 ENSG00000172465 TCEAL1 SIIR|WEX9|p21|pp21 transcription elongation factor A like 1 protein-coding 225-24 chr2 134280582 134280748 + 2 NA intron (NM_001371457, intron 3 of 16) intron (NM_001371457, intron 3 of 16) 26593 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 202-24 chr7 12086362 12086484 + 2 NA Intergenic Intergenic -124871 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 322-4 chr10 114308050 114308259 + 2 NA intron (NM_001001936, intron 9 of 18) intron (NM_001001936, intron 9 of 18) 68540 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 379.5-5 chr11 59150838 59151117 + 2 NA intron (NM_001369457, intron 2 of 2) intron (NM_001369457, intron 2 of 2) 6115 NM_022074 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 287.5-6 chr11 64921459 64921628 + 2 NA Intergenic Intergenic -3146 NM_006244 5526 Hs.75199 NM_006244 ENSG00000068971 PPP2R5B B56B|B56beta|PR61B protein phosphatase 2 regulatory subunit B'beta protein-coding 451.5-8 chr13 53044311 53044587 + 2 NA intron (NM_006418, intron 4 of 4) intron (NM_006418, intron 4 of 4) 15636 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 235-35 chr7 158795002 158795176 + 2 NA intron (NM_020728, intron 3 of 21) intron (NM_020728, intron 3 of 21) 34420 NM_001367773 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 306.5-5 chr1 166422642 166422893 + 2 NA Intergenic LTR1|LTR|ERV1 67272 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 377-14 chr2 49665228 49665494 + 2 NA Intergenic L1PREC2|LINE|L1 308842 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 480-15 chr18 59544485 59544878 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 152742 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 277-25 chr2 98803766 98803945 + 2 NA intron (NM_207362, intron 7 of 9) intron (NM_207362, intron 7 of 9) -31957 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 350-23 chr4 55134317 55134635 + 2 NA Intergenic Intergenic -8881 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 295-31 chr3 63093257 63093423 + 2 NA Intergenic Intergenic -9348 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 505-17 chr22 37716762 37717049 + 2 NA intron (NM_001039141, intron 6 of 23) L1MC4|LINE|L1 19857 NM_001039141 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 243.5-8 chr10 115985416 115985543 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 209310 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 571-10 chr2 228922916 228923425 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 308922 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 838-4 chr13 76689553 76690188 + 2 NA Intergenic MIRb|SINE|MIR 196535 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 368.5-2 chr1 151757375 151757813 + 2 NA Intergenic Intergenic -5375 NM_001134939 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 445.5-17 chr4 56788086 56788369 + 2 NA Intergenic AluJb|SINE|Alu 33246 NR_073419 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 381-14 chr3 27298979 27299279 + 2 NA intron (NM_152534, intron 14 of 38) THE1B-int|LTR|ERVL-MaLR 70254 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 392-3 chr1 107065833 107066155 + 2 NA Intergenic Intergenic 9320 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 514.5-3 chr10 127673634 127674149 + 2 NA Intergenic AluSg|SINE|Alu -63294 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 162.5-15 chr3 151209032 151209206 + 2 NA intron (NM_053002, intron 14 of 42) intron (NM_053002, intron 14 of 42) -5903 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 490-8 chr15 48404637 48405015 + 2 NA Intergenic Intergenic 72629 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 429.5-19 chr6 125807491 125807911 + 2 NA intron (NR_126386, intron 1 of 2) L3|LINE|CR1 11157 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 306.5-10 chr12 12446619 12446846 + 2 NA intron (NM_001300742, intron 3 of 3).2 intron (NM_001300742, intron 3 of 3).2 89654 NM_001300742 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 403-3 chr1 97687646 97687892 + 2 NA intron (NM_000110, intron 7 of 22) L1PA10|LINE|L1 -109152 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 440-27 chr4 32098393 32098859 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -76204 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 546-18 chrX 93125135 93125564 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -300446 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 896-4 chr5 166066027 166066719 + 2 NA Intergenic Intergenic 859997 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 320-15 chr2 178361349 178361657 + 2 NA intron (NM_001201480, intron 13 of 25) intron (NM_001201480, intron 13 of 25) 41261 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 171.5 chr1 42850719 42850877 + 2 NA intron (NM_001242739, intron 3 of 3) intron (NM_001242739, intron 3 of 3) 4185 NM_001242739 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 286.5 chr1 77993075 77993331 + 2 NA intron (NM_001317100, intron 2 of 3) MER58B|DNA|hAT-Charlie -11625 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 541-12 chr20 61113470 61113853 + 2 NA Intergenic Intergenic 34597 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 359-11 chr11 91625475 91625754 + 2 NA Intergenic L2a|LINE|L2 -599420 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 272-35 chr6 28080599 28080755 + 2 NA 5' UTR (NM_003447, exon 1 of 4) 5' UTR (NM_003447, exon 1 of 4) 109 NM_003447 7718 Hs.55481 NM_003447 ENSG00000197279 ZNF165 CT53|LD65|ZSCAN7 zinc finger protein 165 protein-coding 545-7 chr11 43223995 43224382 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 45181 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 469-12 chr2 22064579 22065099 + 2 NA Intergenic L1MC3|LINE|L1 -354187 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 463-20 chr4 66277403 66277850 + 2 NA TTS (NR_031673) TTS (NR_031673) 802 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 232-11 chr11 102563013 102563224 + 2 NA Intergenic L2b|LINE|L2 -32371 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 230.5-34 chr4 49651384 49651556 + 2 NA Intergenic (GAATG)n|Satellite|Satellite 664828 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 315-10 chr11 104945924 104946155 + 2 NA intron (NM_001225, intron 7 of 8) AluSz6|SINE|Alu 22535 NM_033306 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 138-5 chr16 77691914 77692022 + 2 NA Intergenic Intergenic -30524 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 365-20 chr4 145983206 145983547 + 2 NA Intergenic Intergenic -44553 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 421.5-11 chr14 68601406 68601645 + 2 NA intron (NM_001321818, intron 10 of 10) MIRc|SINE|MIR 27262 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 408-8 chr11 2153694 2154117 + 2 NA intron (NR_003512, intron 2 of 6) MIRc|SINE|MIR -4302 NM_001007139 3481 Hs.272259 NM_000612 ENSG00000167244 IGF2 C11orf43|GRDF|IGF-II|PP9974 insulin like growth factor 2 protein-coding 228.5-15 chr16 84534347 84534478 + 2 NA Intergenic MIRc|SINE|MIR -29753 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 540.5-11 chr8 91853490 91853916 + 2 NA Intergenic Intergenic 163977 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 415-20 chr2 184354374 184354765 + 2 NA Intergenic Intergenic -24406 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 440-19 chr2 52480809 52481226 + 2 NA Intergenic Intergenic 110369 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 623-6 chr3 71593309 71593840 + 2 NA Intergenic MER20|DNA|hAT-Charlie -9585 NM_001012505 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 248.5-30 chr8 89862693 89862922 + 2 NA Intergenic MER31-int|LTR|ERV1 -39061 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 549-6 chr17 66966858 66967306 + 2 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 2375 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 351-24 chr2 227867256 227867599 + 2 NA Intergenic Intergenic -3949 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 543.5-16 chr6 55670602 55671017 + 2 NA Intergenic L1MEf|LINE|L1 -91595 NR_109867 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 416-11 chr16 48829621 48829994 + 2 NA Intergenic Intergenic -219627 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 443-37 chr8 123216490 123216770 + 2 NA promoter-TSS (NR_039808) promoter-TSS (NR_039808) -767 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 361-20 chr2 98161914 98162169 + 2 NA intron (NM_001345864, intron 1 of 21) L1MD1|LINE|L1 12508 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 229.5-12 chr17 6062685 6062840 + 2 NA Intergenic Intergenic -7852 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 679.5-9 chr7 6686400 6686894 + 2 NA Intergenic Intergenic 20300 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 432-4 chr13 81323968 81324343 + 2 NA Intergenic Intergenic -97172 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 441 chr1 73861807 73862081 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 187265 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 370.5-20 chr3 183564978 183565424 + 2 NA Intergenic Intergenic -9495 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 163.5-5 chr18 63609999 63610201 + 2 NA Intergenic L1ME2|LINE|L1 22757 NM_001348269 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 420-34 chr7 124532784 124533107 + 2 NA Intergenic Intergenic -180849 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 504-8 chr11 64955505 64956001 + 2 NA intron (NM_001037225, intron 3 of 10) Charlie1a|DNA|hAT-Charlie 16338 NM_001318808 283129 Hs.567793 NM_001037225 ENSG00000168070 MAJIN C11orf85 membrane anchored junction protein protein-coding 228-8 chr2 76611849 76612034 + 2 NA Intergenic MIRb|SINE|MIR -374024 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 408-43 chr8 138793264 138793545 + 2 NA intron (NM_152888, intron 12 of 64) MIR3|SINE|MIR 120637 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 363-5 chr10 37764946 37765232 + 2 NA intron (NR_148006, intron 7 of 7) AluSx|SINE|Alu 30086 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 483-38 chr8 111336835 111337207 + 2 NA Intergenic Intergenic -39618 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 505-22 chr7 52028709 52029089 + 2 NA Intergenic Intergenic -635643 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 247.5 chr1 30951230 30951363 + 2 NA intron (NM_001020658, intron 16 of 21) intron (NM_001020658, intron 16 of 21) -2091 NR_004054 692234 NR_004054 SNORD103A U103 small nucleolar RNA, C/D box 103A snoRNA 458.5-4 chr11 104232743 104232998 + 2 NA Intergenic L1MEc|LINE|L1 -68723 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 660-13 chr6 28407145 28407541 + 2 NA Intergenic Intergenic -7596 NR_136509 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 269-27 chr5 97132231 97132497 + 2 NA intron (NM_153234, intron 1 of 5) intron (NM_153234, intron 1 of 5) 10247 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 368-22 chr20 40979256 40979558 + 2 NA Intergenic L1MA3|LINE|L1 -1306 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 346.5-15 chr2 133075996 133076192 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 160537 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 383-27 chr4 35944502 35944842 + 2 NA Intergenic Intergenic 299267 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 505-8 chr12 116118001 116118424 + 2 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 30442 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 258-2 chr10 96571067 96571341 + 2 NA intron (NM_020123, intron 2 of 14) HAL1|LINE|L1 15808 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 418-5 chr10 88644214 88644493 + 2 NA Intergenic L2b|LINE|L2 -20089 NM_001198829 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 268-19 chr5 163477122 163477325 + 2 NA intron (NM_012484, intron 11 of 17) intron (NM_012484, intron 11 of 17) 16591 NM_012484 3161 Hs.740467 NM_012484 ENSG00000072571 HMMR CD168|IHABP|RHAMM hyaluronan mediated motility receptor protein-coding 390-2 chr10 75477719 75477965 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 46218 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 577.5-17 chr8 42405006 42405368 + 2 NA intron (NM_001135694, intron 9 of 9) intron (NM_001135694, intron 9 of 9) 13307 NM_005662 7419 Hs.699301 NM_005662 ENSG00000078668 VDAC3 HD-VDAC3|VDAC-3 voltage dependent anion channel 3 protein-coding 124.5-13 chr5 162175683 162175766 + 2 NA Intergenic Intergenic 108082 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 229-32 chr8 126544328 126544526 + 2 NA Intergenic L1ME4b|LINE|L1 14051 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 348-2 chr1 119111527 119111825 + 2 NA intron (NM_015836, intron 1 of 5) L1MC1|LINE|L1 -28720 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 244-26 chr5 156382440 156382567 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 55339 NM_001128209 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 396-31 chr7 47007484 47007695 + 2 NA Intergenic L1MC2|LINE|L1 -310467 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 537-16 chr4 47319676 47320204 + 2 NA intron (NM_000812, intron 4 of 8) L1ME4b|LINE|L1 143762 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 248-22 chr7 3665531 3665727 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 364377 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 485-10 chr2 173630962 173631312 + 2 NA Intergenic Intergenic 276265 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 554.5-13 chr5 140629068 140629426 + 2 NA Intergenic AluSx|SINE|Alu 3928 NM_000591 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 583-13 chr5 53264123 53264642 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 154540 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 508.5-8 chr2 58239492 58239924 + 2 NA intron (NM_001114636, intron 1 of 13) L1MC4|LINE|L1 1672 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 553-4 chr18 7210303 7210729 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -20588 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 441.5-6 chr11 94247211 94247517 + 2 NA Intergenic AluSz6|SINE|Alu -58273 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 297.5 chr1 47674421 47674657 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -237222 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 348-34 chr8 119733152 119733506 + 2 NA intron (NM_003184, intron 25 of 25) intron (NM_003184, intron 25 of 25) -59939 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 344-33 chr8 139212694 139213030 + 2 NA Intergenic MIRb|SINE|MIR -298821 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 231-14 chr2 60341595 60341828 + 2 NA Intergenic Intergenic 41325 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 287-46 chrX 40765968 40766184 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -30534 NM_004229 9282 Hs.407604 NM_004229 ENSG00000180182 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 409-5 chr11 87746873 87747126 + 2 NA Intergenic Intergenic -27588 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 483-9 chr14 59625718 59626135 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 4888 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 325-39 chrX 71206105 71206271 + 2 NA Intergenic AluY|SINE|Alu -9024 NM_001097642 2705 Hs.333303 NM_000166 ENSG00000169562 GJB1 CMTX|CMTX1|CX32 gap junction protein beta 1 protein-coding 463-13 chr18 12595620 12595916 + 2 NA intron (NM_020148, intron 2 of 15) L2c|LINE|L2 60964 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 240-8 chr10 54479862 54480082 + 2 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -6258 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 323-9 chr14 74062674 74063134 + 2 NA intron (NM_001278593, intron 11 of 11) intron (NM_001278593, intron 11 of 11) 21549 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 541-17 chr6 49152172 49152670 + 2 NA Intergenic Intergenic 310832 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 270.5-37 chr9 91441775 91442039 + 2 NA Intergenic L1MA9|LINE|L1 -17281 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 422.5-7 chr2 136218088 136218391 + 2 NA Intergenic Intergenic -100084 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 615-12 chr3 130781273 130781653 + 2 NA Intergenic Intergenic -34634 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 340.5-11 chr16 46883271 46883565 + 2 NA promoter-TSS (NM_133443) promoter-TSS (NM_133443) -944 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 306-12 chr19 42481408 42481601 + 2 NA intron (NR_073179, intron 1 of 1) AluSx|SINE|Alu -38558 NM_198477 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 202.5-23 chr5 24570578 24570710 + 2 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 74334 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 609-14 chr4 64530812 64531283 + 2 NA Intergenic Intergenic -121587 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 734.5-2 chr14 20735581 20736083 + 2 NA Intergenic LTR24C|LTR|ERV1 -10055 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 364-12 chr12 116861405 116861766 + 2 NA intron (NM_003806, intron 1 of 1) intron (NM_003806, intron 1 of 1) 19856 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 152.5-2 chr1 27712511 27712639 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -13386 NM_152660 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 479-14 chr20 4607151 4607422 + 2 NA Intergenic Intergenic -79170 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 299-24 chr3 195286846 195287158 + 2 NA intron (NM_012287, intron 21 of 22) intron (NM_012287, intron 21 of 22) -15843 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 457.5-9 chr14 53664462 53664778 + 2 NA Intergenic Intergenic 283864 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 385-7 chr12 6258911 6259204 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51379 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 163-8 chr5 154507976 154508064 + 2 NA Intergenic MIRb|SINE|MIR -29793 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 297-29 chr7 24735160 24735357 + 2 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 22206 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 548.5-19 chr9 103275249 103275623 + 2 NA intron (NR_121578, intron 5 of 9) L1PA16|LINE|L1 49597 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 352.5-6 chr10 48225381 48225596 + 2 NA intron (NM_001018071, intron 10 of 28) MER65D|LTR|ERV1 26269 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 486.5-10 chr2 41668707 41669262 + 2 NA Intergenic HAL1b|LINE|L1 -208571 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 414-17 chr2 66335112 66335405 + 2 NA Intergenic Intergenic 23070 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 347.5-9 chr14 82472038 82472257 + 2 NA Intergenic L1ME3A|LINE|L1 -170485 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 479.5-2 chr11 120141429 120141739 + 2 NA Intergenic Intergenic -3471 NM_012101 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 323.5-23 chr3 177422620 177422871 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -19176 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 253-32 chr6 45878097 45878326 + 2 NA Intergenic Intergenic 59386 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 480 chr1 86902641 86902891 + 2 NA intron (NR_144512, intron 2 of 4) intron (NR_144512, intron 2 of 4) 11360 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 377.5 chr10 54246702 54246948 + 2 NA intron (NM_001354411, intron 8 of 34) L1ME2|LINE|L1 -239405 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 577-6 chr2 68956573 68956972 + 2 NA Intergenic (TTTCTC)n|Simple_repeat|Simple_repeat -3879 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 246.5-14 chr17 32652535 32652767 + 2 NA intron (NM_015194, intron 19 of 21) intron (NM_015194, intron 19 of 21) 165658 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 449-9 chr12 48636656 48636913 + 2 NA Intergenic Intergenic 17734 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 212-22 chr5 25661492 25661614 + 2 NA Intergenic Intergenic 470600 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 418-31 chr8 118979382 118979778 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 27317 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 291-5 chr11 100971425 100971655 + 2 NA intron (NM_001367945, intron 19 of 25) intron (NM_001367945, intron 19 of 25) 37266 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 255-14 chr20 21602260 21602459 + 2 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 32335 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 504-21 chr6 70669281 70669753 + 2 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 987 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 304-20 chr2 52370419 52370723 + 2 NA promoter-TSS (NR_135239) promoter-TSS (NR_135239) -77 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 177.5-8 chr10 41875378 41875515 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 492599 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 514-9 chr18 55316583 55317004 + 2 NA intron (NM_001243228, intron 8 of 19) intron (NM_001243228, intron 8 of 19) 4142 NM_001348215 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 425-36 chr6 71893398 71893734 + 2 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 6863 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 424.5-17 chr6 104140570 104140855 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 718834 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 374-5 chr10 58705762 58706025 + 2 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) -9122 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 284-23 chr21 32103194 32103446 + 2 NA Intergenic Intergenic -17025 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 275.5-12 chr12 111569149 111569286 + 2 NA intron (NM_001310121, intron 1 of 25) MIR|SINE|MIR 30098 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 242-22 chr4 67990144 67990267 + 2 NA Intergenic Intergenic 7234 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 289-26 chr2 123669739 123669941 + 2 NA Intergenic Intergenic 355334 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 275-9 chr11 30445437 30445587 + 2 NA intron (NM_001584, intron 3 of 5) L1MB3|LINE|L1 122408 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 437-19 chr16 86114818 86115257 + 2 NA Intergenic Intergenic -81144 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 215-21 chr3 13672101 13672359 + 2 NA intron (NR_027103, intron 1 of 5) intron (NR_027103, intron 1 of 5) 21509 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 591.5-6 chr4 30902567 30902960 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 182394 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 401-11 chr12 51602604 51602831 + 2 NA intron (NM_001369788, intron 1 of 25) intron (NM_001369788, intron 1 of 25) 11481 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 294-40 chr8 122709016 122709240 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -15022 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 358-16 chr14 59357648 59358071 + 2 NA intron (NM_001270520, intron 20 of 24) intron (NM_001270520, intron 20 of 24) 94418 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 278.5-15 chr3 36858473 36858699 + 2 NA intron (NM_001329998, intron 12 of 23) intron (NM_001329998, intron 12 of 23) -36086 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 240-9 chr10 59992480 59992614 + 2 NA Intergenic AluSc8|SINE|Alu -31634 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 284-31 chr5 11092927 11093101 + 2 NA intron (NM_001364128, intron 12 of 19) intron (NM_001364128, intron 12 of 19) -331780 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 365-19 chr4 108935824 108936061 + 2 NA intron (NR_045756, intron 7 of 35) intron (NR_045756, intron 7 of 35) -172889 NM_001146627 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 367.5-12 chr15 73842114 73842468 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -31273 NM_153356 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 492.5-5 chr12 27518301 27518682 + 2 NA Intergenic Intergenic -5715 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 691-8 chr7 14691998 14692747 + 2 NA intron (NM_001350717, intron 9 of 24) intron (NM_001350717, intron 9 of 24) 149078 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 372-31 chr4 112034155 112034377 + 2 NA Intergenic Intergenic -111188 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 227-25 chr3 86108278 86108456 + 2 NA Intergenic ERVL47-int|LTR|ERVL -280317 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 362.5-20 chr21 29416091 29416401 + 2 NA Intergenic L1PB1|LINE|L1 43745 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 295.5-29 chr7 42779425 42779616 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -73073 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 616.5-10 chr2 143143870 143144187 + 2 NA intron (NM_018460, intron 1 of 13) L1PA13|LINE|L1 14609 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 267-16 chr18 26222101 26222332 + 2 NA Intergenic L2-3_Crp|LINE|L2 -4229 NR_121653 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 312.5-24 chr5 123539535 123539786 + 2 NA intron (NM_001364141, intron 2 of 14) L1ME2|LINE|L1 -5757 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 211.5-8 chr13 65025824 65025974 + 2 NA Intergenic L1MA4A|LINE|L1 -840148 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 446.5-26 chr8 118948309 118948568 + 2 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 3447 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 622.5-7 chr8 9562527 9563205 + 2 NA intron (NM_003747, intron 1 of 26) HAL1M8|LINE|L1 6954 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 282-27 chr8 123671601 123671801 + 2 NA Intergenic Intergenic -17900 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 318-10 chr12 126923137 126923523 + 2 NA intron (NR_104646, intron 4 of 6) intron (NR_104646, intron 4 of 6) -48640 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 235.5-14 chr2 68022234 68022482 + 2 NA Intergenic L1MA3|LINE|L1 40646 NM_001190263 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 517.5-10 chr2 89828193 89828776 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -190577 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 269-18 chr17 59018794 59019038 + 2 NA intron (NR_148346, intron 19 of 23) L1MB7|LINE|L1 87964 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 451.5-21 chr6 45166067 45166447 + 2 NA intron (NM_001350325, intron 2 of 10) AluJb|SINE|Alu 31513 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 416.5-23 chrUn_KI270519v1 137409 137789 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 490.5-10 chr2 209640619 209641245 + 2 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 61253 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 253-26 chr4 52014303 52014441 + 2 NA intron (NM_001024611, intron 2 of 4) intron (NM_001024611, intron 2 of 4) 5991 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 402.5-17 chr2 117932155 117932356 + 2 NA intron (NM_019044, intron 22 of 23) intron (NM_019044, intron 22 of 23) 81815 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 769-4 chr20 31896579 31897070 + 2 NA intron (NR_148013, intron 3 of 16) AluSx1|SINE|Alu 17007 NR_160277 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 582.5-12 chr8 126262717 126263197 + 2 NA Intergenic Intergenic -62538 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 242-29 chr7 108804027 108804197 + 2 NA Intergenic Intergenic 80475 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 330.5-14 chr13 71947364 71947573 + 2 NA Intergenic L2a|LINE|L2 -80264 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 316-41 chr7 46963281 46963520 + 2 NA Intergenic L1MB5|LINE|L1 -266278 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 350-30 chr5 45067185 45067415 + 2 NA Intergenic Intergenic 258353 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 305-47 chr8 129774076 129774329 + 2 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 12422 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 507-24 chr4 61684008 61684431 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 477546 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 220.5-9 chr12 118018142 118018271 + 2 NA intron (NM_181578, intron 2 of 11) L1MB5|LINE|L1 1503 NM_007370 5985 Hs.731908 NM_007370 ENSG00000111445 RFC5 RFC36 replication factor C subunit 5 protein-coding 180 chr10 13172466 13172632 + 2 NA intron (NM_018518, intron 4 of 19) intron (NM_018518, intron 4 of 19) 10991 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 231.5-22 chr3 130774322 130774450 + 2 NA Intergenic Intergenic -27557 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 403-25 chr2 126796907 126797183 + 2 NA Intergenic Intergenic -101845 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 486-9 chr11 47915207 47915596 + 2 NA Intergenic Intergenic -65158 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 501-11 chr2 187351925 187352368 + 2 NA exon (NM_001271751, exon 12 of 14) exon (NM_001271751, exon 12 of 14) 96106 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 341.5-5 chr11 46417508 46417799 + 2 NA intron (NR_160027, intron 15 of 18) intron (NR_160027, intron 15 of 18) -25985 NM_001366692 1132 Hs.248100 NM_000741 ENSG00000180720 CHRM4 HM4|M4R cholinergic receptor muscarinic 4 protein-coding 322-22 chr8 129336997 129337240 + 2 NA Intergenic Intergenic -95878 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 269.5-24 chr2 168628715 168628911 + 2 NA intron (NM_001256126, intron 3 of 10) L1M6|LINE|L1 45870 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 348-26 chr4 168605983 168606222 + 2 NA intron (NM_001166108, intron 2 of 21) L1ME4b|LINE|L1 -25476 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 2007 chr17_KI270729v1_random 27441 28062 + 14 NA NA (GAATG)n|Satellite|Satellite NA NA 261.5 chr1 68246264 68246674 + 1.5 NA Intergenic Intergenic -13923 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 320.5-17 chr2 68144532 68144766 + 1.5 NA exon (NM_001256476, exon 3 of 7) exon (NM_001256476, exon 3 of 7) 12878 NM_138458 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 443.5-17 chr8 131220957 131221304 + 1.5 NA Intergenic Intergenic -180221 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 417.5-8 chr20 5022962 5023420 + 1.5 NA Intergenic AluSx|SINE|Alu -12878 NM_203327 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 286.5-30 chr6 81879795 81880123 + 1.5 NA intron (NR_149135, intron 3 of 3) L2b|LINE|L2 53521 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 317.5-5 chr11 11003649 11003989 + 1.5 NA Intergenic LTR33B|LTR|ERVL 145602 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 406-2 chr11 6741663 6742029 + 1.5 NA Intergenic Intergenic -19967 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 269.5-43 chr5 68482078 68482327 + 1.5 NA Intergenic Intergenic 189625 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 361-32 chr9 19438331 19438866 + 1.5 NA intron (NM_001010887, intron 4 of 5) intron (NM_001010887, intron 4 of 5) 29589 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 171.5-7 chr15 72399442 72399613 + 1.5 NA intron (NM_001080462, intron 2 of 4) intron (NM_001080462, intron 2 of 4) 1222 NR_148418 338949 Hs.446069 NM_001080462 ENSG00000187806 TMEM202 - transmembrane protein 202 protein-coding 245.5-39 chr9 71585647 71585947 + 1.5 NA Intergenic Intergenic -138826 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 235-7 chr11 62900600 62900813 + 1.5 NA Intergenic AluSx4|SINE|Alu 19007 NR_037193 6520 Hs.502769 NM_002394 ENSG00000168003 SLC3A2 4F2|4F2HC|4T2HC|CD98|CD98HC|MDU1|NACAE solute carrier family 3 member 2 protein-coding 343-31 chr8 83660074 83660473 + 1.5 NA Intergenic Intergenic 256515 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 313.5-23 chr20 964434 964683 + 1.5 NA intron (NM_001029871, intron 3 of 4) intron (NM_001029871, intron 3 of 4) 37753 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 637-14 chr8 88385588 88386447 + 1.5 NA Intergenic Intergenic -58534 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 345.5-24 chr4 16257241 16257586 + 1.5 NA non-coding (NR_027696, exon 3 of 3) non-coding (NR_027696, exon 3 of 3) 30750 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 292.5-34 chr9 19292212 19292448 + 1.5 NA intron (NR_073201, intron 5 of 31) AluSq|SINE|Alu 61637 NM_001330640 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 385.5-29 chr2 235884850 235885110 + 1.5 NA intron (NM_001037131, intron 10 of 17) AluJr|SINE|Alu 283406 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 313-8 chr12 7457531 7458056 + 1.5 NA Intergenic L1MA8|LINE|L1 -13608 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 279.5-16 chr6 42287425 42287641 + 1.5 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -69672 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 145.5-11 chr13 56340723 56340839 + 1.5 NA Intergenic L1PA16|LINE|L1 -800137 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 184-8 chr5 53598995 53599117 + 1.5 NA intron (NR_134475, intron 2 of 5) intron (NR_134475, intron 2 of 5) 38417 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 377.5-20 chr8 127626023 127626476 + 1.5 NA Intergenic Intergenic 107718 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 262-11 chr11 86495420 86495715 + 1.5 NA intron (NM_001014811, intron 5 of 13) intron (NM_001014811, intron 5 of 13) 120680 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 359.5-40 chr9 35174119 35174639 + 1.5 NA intron (NM_006377, intron 1 of 38) AluSz6|SINE|Alu 12370 NM_001371186 134-2 chr1 236942092 236942280 + 1.5 NA Intergenic Intergenic 62255 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 230.5-12 chr10 112911064 112911321 + 1.5 NA Intergenic Intergenic -39055 NM_001146284 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 201-9 chr14 79863599 79863759 + 1.5 NA non-coding (NR_158973, exon 23 of 23) non-coding (NR_158973, exon 23 of 23) -347740 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 322.5-27 chr7 27713866 27714328 + 1.5 NA Intergenic Intergenic -25276 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 202.5-22 chr5 14239646 14239893 + 1.5 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 96427 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 326-15 chr12 94909331 94909548 + 1.5 NA Intergenic Intergenic 74985 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 175.5-12 chr2 85451582 85451775 + 1.5 NA Intergenic L2a|LINE|L2 32747 NM_201594 284948 Hs.209542 NM_198482 ENSG00000152292 SH2D6 - SH2 domain containing 6 protein-coding 503-5 chr12 130043979 130044450 + 1.5 NA Intergenic Intergenic -1872 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 205-3 chr10 12188307 12188534 + 1.5 NA intron (NM_001321648, intron 1 of 10) intron (NM_001321648, intron 1 of 10) 7471 NM_014142 11164 Hs.555956 NM_014142 ENSG00000165609 NUDT5 YSA1|YSA1H|YSAH1|hNUDT5 nudix hydrolase 5 protein-coding 225-15 chr16 57148364 57148679 + 1.5 NA TTS (NM_152727) TTS (NM_152727) 34029 NM_001354101 80011 Hs.396740 NM_024946 ENSG00000172775 FAM192A C16orf94|CDA018|CDA10|NIP30|PIP30 family with sequence similarity 192 member A protein-coding 387-14 chr17 11000662 11001251 + 1.5 NA Intergenic MIR|SINE|MIR -162869 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 361-30 chr8 99854993 99855260 + 1.5 NA intron (NM_017890, intron 56 of 61) AluJo|SINE|Alu 38581 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 392.5-9 chr14 55523505 55523864 + 1.5 NA Intergenic AluSz|SINE|Alu 56408 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 407.5-4 chr11 72050031 72050581 + 1.5 NA intron (NR_104476, intron 2 of 24) MIRc|SINE|MIR 21996 NR_036123 100422953 NR_036123 ENSG00000263742 MIR3165 mir-3165 microRNA 3165 ncRNA 227.5-31 chr7 158511367 158511660 + 1.5 NA intron (NM_130843, intron 1 of 21) intron (NM_130843, intron 1 of 21) 21300 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 185-8 chr5 116271911 116272113 + 1.5 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 16269 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 362.5-6 chr11 97526204 97526572 + 1.5 NA Intergenic Intergenic 1017963 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 436-23 chr20 45162145 45162592 + 1.5 NA Intergenic L1P4|LINE|L1 -12534 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 223.5-2 chr1 86151644 86151882 + 1.5 NA intron (NM_152890, intron 1 of 59) intron (NM_152890, intron 1 of 59) 4708 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 177-13 chr3 62337790 62338021 + 1.5 NA Intergenic L2a|LINE|L2 18883 NM_001291942 57415 Hs.47166 NM_020685 ENSG00000114405 C3orf14 HT021 chromosome 3 open reading frame 14 protein-coding 389.5-8 chr10 64528826 64529097 + 1.5 NA Intergenic Intergenic -296567 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 166.5-10 chr2 112679521 112679731 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 33687 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 272-8 chr13 110848468 110848781 + 1.5 NA Intergenic Intergenic 21684 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 346.5-16 chr2 241635412 241635687 + 1.5 NA intron (NM_015963, intron 1 of 5) AluSz|SINE|Alu 1609 NM_015963 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 168.5-31 chr8 26106669 26106858 + 1.5 NA Intergenic L1ME1|LINE|L1 -61350 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 223-17 chr2 21941804 21942057 + 1.5 NA Intergenic Intergenic -231278 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 421-3 chr10 20071647 20072000 + 1.5 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 255391 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 156 chr1 39294642 39294791 + 1.5 NA intron (NM_012090, intron 17 of 92) intron (NM_012090, intron 17 of 92) -114357 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 186.5-18 chr20 43132590 43132766 + 1.5 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 57228 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 284-20 chr2 185127708 185128025 + 1.5 NA Intergenic Intergenic 39206 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 367 chr1 44712277 44712794 + 1.5 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 9366 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 185-3 chr14 74126759 74126955 + 1.5 NA intron (NM_001024674, intron 5 of 5) L1MB5|LINE|L1 41904 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 252-3 chr1 186750878 186751082 + 1.5 NA Intergenic L2c|LINE|L2 70326 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 117-3 chr8 90087740 90087855 + 1.5 NA Intergenic MER104|DNA|TcMar-Tc2 -4918 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 325-33 chr8 92593564 92593893 + 1.5 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 61766 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 293.5-26 chr5 119653742 119654110 + 1.5 NA Intergenic Intergenic 24367 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 158-2 chr10 86518363 86518534 + 1.5 NA intron (NM_001318328, intron 1 of 18) intron (NM_001318328, intron 1 of 18) 3336 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 274.5-16 chr20 56813797 56814096 + 1.5 NA Intergenic L1PA10|LINE|L1 184640 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 257.5-21 chr2 36620931 36621169 + 1.5 NA Intergenic LTR88b|LTR|Gypsy? -22882 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 386-21 chr20 13402999 13403348 + 1.5 NA intron (NM_017714, intron 13 of 13) intron (NM_017714, intron 13 of 13) -163486 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 230-35 chr8 138761035 138761325 + 1.5 NA intron (NM_152888, intron 17 of 64) intron (NM_152888, intron 17 of 64) 152861 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 631-4 chr14 30131236 30131861 + 1.5 NA Intergenic Intergenic -203701 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 369.5-26 chr8 138543199 138543610 + 1.5 NA Intergenic Intergenic -45674 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 277-14 chr14 51207162 51207403 + 1.5 NA Intergenic Intergenic -32965 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 280.5-29 chr5 118532427 118532721 + 1.5 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 29543 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 161-13 chr5 91336240 91336463 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -21949 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 129.5-12 chr3 60470616 60470765 + 1.5 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 147180 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 200.5-7 chr10 58729194 58729450 + 1.5 NA intron (NM_001080512, intron 3 of 20) Tigger1|DNA|TcMar-Tigger 14307 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 240-14 chr13 45284825 45285138 + 1.5 NA TTS (NM_004128) TTS (NM_004128) 51466 NR_145985 109616966 NR_145726 ENSG00000253051 SNORA31B - small nucleolar RNA, H/ACA box 31B snoRNA 254-26 chr3 107744471 107744646 + 1.5 NA intron (NM_001276286, intron 7 of 16) intron (NM_001276286, intron 7 of 16) 133510 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 178.5-16 chr4 83062818 83063056 + 1.5 NA intron (NM_001258006, intron 6 of 8) Tigger17a|DNA|TcMar-Tigger 27754 NM_016129 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 197-13 chr12 120081553 120081762 + 1.5 NA intron (NM_001367886, intron 8 of 9) intron (NM_001367886, intron 8 of 9) 35096 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 452.5-12 chr22 47615371 47615851 + 1.5 NA Intergenic MER44C|DNA|TcMar-Tigger 15958 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 131.5-2 chr1 187285521 187285608 + 1.5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -158064 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 227-20 chr2 139608877 139609124 + 1.5 NA Intergenic L1MA2|LINE|L1 711676 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 284.5-38 chr6 144493261 144493633 + 1.5 NA exon (NM_007124, exon 32 of 74) exon (NM_007124, exon 32 of 74) 87792 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 259.5-47 chr8 138521223 138521570 + 1.5 NA Intergenic Intergenic -23666 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 312.5-10 chr14 74504965 74505297 + 1.5 NA exon (NM_000428, exon 29 of 36) exon (NM_000428, exon 29 of 36) 11366 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 219-24 chr3 156294894 156295123 + 1.5 NA intron (NM_172159, intron 1 of 13) L2b|LINE|L2 3971 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 436.5-10 chr22 41329500 41329995 + 1.5 NA intron (NM_017590, intron 5 of 22) intron (NM_017590, intron 5 of 22) -27378 NM_001317930 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 215 chr1 57301580 57301770 + 1.5 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 121437 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 152.5-11 chr12 1904828 1904963 + 1.5 NA intron (NM_172364, intron 6 of 37).2 L1M4c|LINE|L1 13757 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 426-7 chr12 40438110 40438530 + 1.5 NA exon (NM_173600, exon 28 of 174) exon (NM_173600, exon 28 of 174) 44926 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 236.5-18 chr19 46325776 46325969 + 1.5 NA intron (NM_152796, intron 10 of 11) (GGAT)n|Simple_repeat|Simple_repeat -21215 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 266.5-25 chr7 53649910 53650130 + 1.5 NA Intergenic L1MB3|LINE|L1 161911 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 389-28 chr3 21793032 21793473 + 1.5 NA Intergenic MIRc|SINE|MIR -42042 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 206.5-8 chr12 40060229 40060426 + 1.5 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 45754 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 151.5-25 chr8 76624800 76625012 + 1.5 NA intron (NR_024360, intron 2 of 3) MIR3|SINE|MIR -56341 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 374.5-23 chr5 155067026 155067490 + 1.5 NA Intergenic Intergenic 53503 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 440.5-16 chr20 62814420 62815086 + 1.5 NA TTS (NM_007346) TTS (NM_007346) -2297 NM_001853 1299 Hs.716639 NM_001853 ENSG00000092758 COL9A3 DJ885L7.4.1|EDM3|IDD|MED collagen type IX alpha 3 chain protein-coding 120.5-10 chr2 6724838 6724970 + 1.5 NA Intergenic Intergenic 45407 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 312.5-17 chr21 17985121 17985421 + 1.5 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 67931 NM_001204178 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 291-2 chr1 107822797 107823142 + 1.5 NA intron (NM_006113, intron 2 of 26) L2a|LINE|L2 -74254 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 290-16 chr2 62430079 62430387 + 1.5 NA Intergenic MamRep1151|LTR?|LTR? 75962 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 218-40 chr9 83428638 83428848 + 1.5 NA intron (NM_174938, intron 1 of 13) MIRb|SINE|MIR 38999 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 336.5-3 chr1 118588530 118588926 + 1.5 NA Intergenic MER4B|LTR|ERV1 399615 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 378.5-25 chr5 16909821 16910231 + 1.5 NA intron (NM_012334, intron 1 of 40) MSTB1|LTR|ERVL-MaLR 26262 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 302.5-11 chr12 113446225 113446655 + 1.5 NA Intergenic L2|LINE|L2 24050 NM_138432 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 454-15 chr2 204023147 204023630 + 1.5 NA Intergenic LTR83|LTR|ERVL 86640 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 445-10 chr16 54641930 54642303 + 1.5 NA Intergenic Intergenic 206117 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 445.5-9 chr2 112232424 112232823 + 1.5 NA intron (NM_032494, intron 6 of 8) intron (NM_032494, intron 6 of 8) 22419 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 250-33 chr5 24053156 24053350 + 1.5 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 101905 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 403-16 chr15 67517219 67517742 + 1.5 NA intron (NR_040054, intron 2 of 2) intron (NR_040054, intron 2 of 2) 3493 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 205-6 chr11 10359804 10359940 + 1.5 NA intron (NR_103765, intron 2 of 3) L1MEf|LINE|L1 51559 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 162-5 chr16 72045067 72045234 + 1.5 NA Intergenic Intergenic -9355 NM_001318138 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 637-5 chr2 177495115 177495788 + 1.5 NA intron (NM_003659, intron 12 of 19) MIRb|SINE|MIR 57345 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 300-32 chr8 144971269 144971514 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -20511 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 160-6 chr10 65490570 65490719 + 1.5 NA Intergenic L1MEd|LINE|L1 -80781 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 332.5-15 chr6 52696236 52696659 + 1.5 NA Intergenic Intergenic 25334 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 360-9 chr10 57035248 57035606 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 269132 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 137-6 chr6 3215879 3215972 + 1.5 NA Intergenic AluSc8|SINE|Alu 11728 NM_178012 347733 Hs.300701 NM_178012 ENSG00000137285 TUBB2B CDCBM7|PMGYSA|bA506K6.1 tubulin beta 2B class IIb protein-coding 196-20 chr7 1148959 1149216 + 1.5 NA 3' UTR (NM_001365383, exon 6 of 6) 3' UTR (NM_001365383, exon 6 of 6) -10830 NM_001350968 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 207.5-37 chr8 69893406 69893626 + 1.5 NA Intergenic MER58C|DNA|hAT-Charlie -58538 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 417-32 chr4 95047172 95047609 + 1.5 NA intron (NM_001256792, intron 1 of 10) L1MC3|LINE|L1 -4287 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 160.5-23 chr9 30321786 30321919 + 1.5 NA Intergenic Intergenic 86602 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 398-39 chr9 99321561 99321889 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 53532 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 130-8 chr5 90831110 90831196 + 1.5 NA intron (NR_003149, intron 77 of 89) MLT2B4|LTR|ERVL 272356 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 172.5-2 chr1 115522086 115522294 + 1.5 NA Intergenic L2a|LINE|L2 -119780 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 280.5-19 chr2 180069169 180069463 + 1.5 NA Intergenic Intergenic -62019 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 376.5-8 chr16 13203074 13203589 + 1.5 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 301733 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 570-4 chr12 33122848 33123523 + 1.5 NA Intergenic MIR|SINE|MIR -226339 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 171.5-28 chr7 103870141 103870309 + 1.5 NA intron (NM_005045, intron 2 of 64) L1M4a1|LINE|L1 119291 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 179-13 chr22 25953012 25953202 + 1.5 NA intron (NM_001318245, intron 38 of 43) L2b|LINE|L2 210919 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 364.5-2 chr1 224924473 224924851 + 1.5 NA Intergenic AluSx1|SINE|Alu -4992 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 330-39 chr6 126466283 126466719 + 1.5 NA intron (NR_104462, intron 3 of 3) L1MC3|LINE|L1 -18130 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 260-6 chr11 94288458 94288776 + 1.5 NA Intergenic L1M4|LINE|L1 -17020 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 516-14 chr2 11969551 11970079 + 1.5 NA Intergenic L1MA4A|LINE|L1 -37301 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 285.5-34 chr8 98608643 98608877 + 1.5 NA intron (NM_001256313, intron 4 of 8) MamRep605|LTR?|LTR? 181802 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 221.5-6 chr12 80139799 80139976 + 1.5 NA intron (NM_001368062, intron 5 of 62) intron (NM_001368062, intron 5 of 62) 40350 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 309.5-13 chr14 88031405 88031664 + 1.5 NA intron (NR_046094, intron 2 of 3) ERVL-E-int|LTR|ERVL -5222 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 261.5-10 chr13 60185684 60186066 + 1.5 NA Intergenic AluJo|SINE|Alu -21890 NM_001258369 81624 Hs.283127 NM_030932 ENSG00000139734 DIAPH3 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 diaphanous related formin 3 protein-coding 468.5-7 chr2 169068239 169068740 + 1.5 NA intron (NM_001289763, intron 1 of 4) AluSx1|SINE|Alu 1412 NM_199204 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 324-39 chr8 84140415 84140762 + 1.5 NA Intergenic Intergenic -42199 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 621-6 chr18 70883366 70883836 + 1.5 NA Intergenic Intergenic -232647 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 342-36 chr7 145211155 145211442 + 1.5 NA Intergenic Intergenic -375245 NM_001350889 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 265-13 chr16 14353332 14353671 + 1.5 NA Intergenic L1MA3|LINE|L1 16765 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 200-6 chr12 21490383 21490556 + 1.5 NA intron (NM_002907, intron 3 of 14) intron (NM_002907, intron 3 of 14) 11166 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 294-22 chr2 126040340 126040569 + 1.5 NA Intergenic Intergenic 77531 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 384.5-24 chr7 104314093 104314409 + 1.5 NA Intergenic L2c|LINE|L2 -14405 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 187-21 chr3 195075998 195076193 + 1.5 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) -18493 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 332-20 chr20 5479444 5479902 + 1.5 NA Intergenic L1M4|LINE|L1 8477 NR_029405 643406 Hs.431161 NM_175877 LOC643406 - uncharacterized LOC643406 ncRNA 349-16 chr15 78494992 78495370 + 1.5 NA intron (NM_001354994, intron 20 of 21) intron (NM_001354994, intron 20 of 21) -12383 NM_001083612 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 125 chr13 103986767 103986936 + 1.5 NA Intergenic Intergenic 561651 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 223.5-21 chr2 240323666 240323995 + 1.5 NA Intergenic Intergenic -111833 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 404.5-12 chr2 100399416 100399878 + 1.5 NA intron (NM_004854, intron 4 of 6) intron (NM_004854, intron 4 of 6) 18021 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 379-39 chr7 97181256 97181650 + 1.5 NA 3' UTR (NM_020186, exon 2 of 2) 3' UTR (NM_020186, exon 2 of 2) 64860 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 381.5-22 chr6 72312407 72312774 + 1.5 NA intron (NM_001350433, intron 19 of 25) intron (NM_001350433, intron 19 of 25) -54156 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 489-31 chr7 4609265 4609700 + 1.5 NA Intergenic Intergenic -72813 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 440-16 chr2 31339929 31340523 + 1.5 NA intron (NM_000379, intron 33 of 35) intron (NM_000379, intron 33 of 35) 74516 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 321-30 chr8 133415719 133415992 + 1.5 NA Intergenic Intergenic -118551 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 149-12 chr8 40424987 40425157 + 1.5 NA Intergenic Intergenic -81709 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 359-8 chr10 53254346 53254639 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -482792 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 360-6 chr1 190871641 190872155 + 1.5 NA Intergenic Intergenic 247008 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 364-27 chr5 30564356 30564771 + 1.5 NA Intergenic Intergenic -629123 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 457.5-29 chr8 113037269 113037759 + 1.5 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 339638 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 380-4 chr12 129694774 129695283 + 1.5 NA intron (NM_133448, intron 2 of 8) AluSc8|SINE|Alu 208997 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 420-8 chr14 45721738 45722134 + 1.5 NA Intergenic AluJo|SINE|Alu -6334 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 229.5-8 chr13 92446166 92446466 + 1.5 NA intron (NM_004466, intron 7 of 7) L1MA2|LINE|L1 -43847 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 312.5-4 chr10 63958070 63958299 + 1.5 NA Intergenic L1ME3A|LINE|L1 -436294 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 331.5-16 chr22 23693810 23694194 + 1.5 NA intron (NM_001329424, intron 4 of 11) intron (NM_001329424, intron 4 of 11) -2414 NM_001329425 266747 Hs.658997 NM_153615 ENSG00000159496 RGL4 Rgr ral guanine nucleotide dissociation stimulator like 4 protein-coding 438.5-3 chr16 86064719 86065094 + 1.5 NA Intergenic Intergenic -131275 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 203.5-10 chr15 27142640 27142812 + 1.5 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 18593 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 296.5-26 chr4 60983228 60983662 + 1.5 NA Intergenic L1M4b|LINE|L1 60826 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 288.5-24 chr2 49000339 49000660 + 1.5 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -59104 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 443.5-10 chr3 17895188 17895682 + 1.5 NA Intergenic L1M1|LINE|L1 -67117 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 344.5-33 chr8 96270399 96270908 + 1.5 NA intron (NM_014754, intron 1 of 12) intron (NM_014754, intron 1 of 12) 8751 NM_001290225 9791 Hs.292579 NM_014754 ENSG00000156471 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 335-24 chr2 28577974 28578405 + 1.5 NA intron (NR_138141, intron 3 of 35) intron (NR_138141, intron 3 of 35) 11832 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 203-5 chr17 41828770 41828987 + 1.5 NA exon (NM_052935, exon 7 of 9) exon (NM_052935, exon 7 of 9) -6807 NM_001329595 317719 Hs.127510 NM_152467 ENSG00000161594 KLHL10 SPGF11 kelch like family member 10 protein-coding 410-17 chr20 17407606 17408089 + 1.5 NA intron (NM_002594, intron 5 of 11) intron (NM_002594, intron 5 of 11) 123532 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 484-17 chr16 85306442 85306883 + 1.5 NA promoter-TSS (NR_049816) promoter-TSS (NR_049816) -337 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 223.5-25 chr3 43312922 43313215 + 1.5 NA intron (NM_001100594, intron 2 of 5) L1MD2|LINE|L1 26528 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 334.5-27 chr6 70963745 70964034 + 1.5 NA Intergenic Intergenic -6829 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 368.5-10 chr11 21869155 21869611 + 1.5 NA Intergenic MIR3|SINE|MIR -323702 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 235.5-6 chr11 81696877 81697045 + 1.5 NA Intergenic L1M2|LINE|L1 193875 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 255.5-23 chr5 101371392 101371639 + 1.5 NA Intergenic Intergenic -468233 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 317-31 chr9 80992339 80992662 + 1.5 NA Intergenic L1MD1|LINE|L1 697035 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 239.5-29 chr9 76000506 76000690 + 1.5 NA intron (NR_120409, intron 3 of 19) L1MC5|LINE|L1 109925 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 131.5-4 chr10 52352375 52352549 + 1.5 NA Intergenic Intergenic 38181 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 311-6 chr1 199954880 199955128 + 1.5 NA Intergenic LTR33|LTR|ERVL -72706 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 127-7 chr5 30552951 30553072 + 1.5 NA Intergenic L1MC3|LINE|L1 -640675 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 205-25 chr5 140543230 140543422 + 1.5 NA intron (NM_020690, intron 34 of 35) intron (NM_020690, intron 34 of 35) -4336 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 414.5-16 chr22 38977890 38978220 + 1.5 NA intron (NM_001193289, intron 4 of 4) AluSx3|SINE|Alu -4292 NM_004900 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 267.5-18 chr3 183903571 183903794 + 1.5 NA Intergenic Intergenic 16882 NR_039650 100616127 NR_039650 ENSG00000263932 MIR4448 - microRNA 4448 ncRNA 152.5-29 chr9 70862738 70862895 + 1.5 NA intron (NM_001366143, intron 3 of 25) MIR|SINE|MIR 6236 NM_001007470 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 327-18 chr16 50015572 50016027 + 1.5 NA Intergenic L1MB3|LINE|L1 -9407 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 325-29 chr7 33320175 33320535 + 1.5 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 190791 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 272-4 chr10 23885778 23886131 + 1.5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 191227 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 138-2 chr14 51471560 51471746 + 1.5 NA intron (NR_051990, intron 2 of 2) HAL1ME|LINE|L1 -17475 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 251.5-28 chr9 98164962 98165270 + 1.5 NA intron (NM_052820, intron 1 of 11) AluJr|SINE|Alu 7776 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 284-28 chr4 101864252 101864585 + 1.5 NA intron (NM_017935, intron 4 of 16) MER112|DNA|hAT-Charlie 50576 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 219-39 chr8 109441155 109441467 + 1.5 NA exon (NM_177531, exon 34 of 78) exon (NM_177531, exon 34 of 78) 78850 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 409.5-16 chr20 37871203 37871624 + 1.5 NA intron (NM_001281495, intron 16 of 16) MLT1A1|LTR|ERVL-MaLR -31714 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 337-7 chr12 132297960 132298318 + 1.5 NA intron (NM_001122636, intron 1 of 10) intron (NM_001122636, intron 1 of 10) 22748 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 187-15 chr20 4936505 4936725 + 1.5 NA intron (NM_005116, intron 2 of 16) intron (NM_005116, intron 2 of 16) 64895 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 413.5-14 chr20 13238625 13239072 + 1.5 NA intron (NR_040043, intron 2 of 2) intron (NR_040043, intron 2 of 2) 839 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 254-35 chr5 166728592 166728785 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 197682 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 257.5-45 chr9 38701773 38702098 + 1.5 NA Intergenic L1ME4a|LINE|L1 80847 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 304-3 chr10 41891978 41892204 + 1.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 475954 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 248-2 chr10 30320809 30321120 + 1.5 NA intron (NM_018109, intron 6 of 8) intron (NM_018109, intron 6 of 8) 28374 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 366-25 chrX 39081110 39081440 + 1.5 NA Intergenic U6|snRNA|snRNA 246087 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 242.5-17 chr22 30984825 30985048 + 1.5 NA Intergenic L1MC5a|LINE|L1 15725 NR_152870 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 377-17 chr20 12473760 12474105 + 1.5 NA Intergenic L1MC3|LINE|L1 463031 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 330.5-33 chr7 35506701 35507088 + 1.5 NA Intergenic L1MC5a|LINE|L1 188241 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 387.5-15 chr20 28494715 28495184 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 107716 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 260.5 chr1 181903871 181904180 + 1.5 NA Intergenic MER102a|DNA|hAT-Charlie 157687 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 378-17 chr22 22175608 22176084 + 1.5 NA Intergenic Intergenic -68940 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 309-23 chr20 19332406 19332684 + 1.5 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -47949 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 206 chr1 155925253 155925485 + 1.5 NA TTS (NR_003005) TTS (NR_003005) 717 NR_003005 677771 Hs.678903 NR_003005 ENSG00000281394 SCARNA4 ACA26 small Cajal body-specific RNA 4 ncRNA 437-25 chr2 44165925 44166452 + 1.5 NA Intergenic Intergenic -2615 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 186.5-11 chr17 50695555 50695742 + 1.5 NA 3' UTR (NM_052855, exon 5 of 5) 3' UTR (NM_052855, exon 5 of 5) 12266 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 382.5-9 chr15 83698722 83699135 + 1.5 NA intron (NM_207517, intron 2 of 29) L2a|LINE|L2 44805 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 286-17 chr2 193397322 193397512 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 647572 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 285.5-29 chr7 5813210 5813478 + 1.5 NA Intergenic AluSz|SINE|Alu -9816 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 134-8 chr8 100012664 100012826 + 1.5 NA intron (NM_015668, intron 14 of 27) intron (NM_015668, intron 14 of 27) 8163 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 274.5-17 chr3 98143763 98143977 + 1.5 NA Intergenic Intergenic -5516 NM_001005514 403273 Hs.554714 NM_001005514 ENSG00000236032 OR5H14 - olfactory receptor family 5 subfamily H member 14 protein-coding 222-19 chr21 16326308 16326503 + 1.5 NA intron (NR_027790, intron 4 of 7) L2a|LINE|L2 -41637 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 469-5 chr11 19905518 19906226 + 1.5 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -116684 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 332.5-23 chr8 140418255 140418799 + 1.5 NA intron (NM_001321646, intron 4 of 21) AluSx|SINE|Alu 39217 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 132.5-11 chr2 172429866 172430027 + 1.5 NA intron (NM_001365530, intron 1 of 25) intron (NM_001365530, intron 1 of 25) 2360 NM_001079818 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 440-15 chr2 26024080 26024452 + 1.5 NA Intergenic L1M5|LINE|L1 -9818 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 250-13 chr15 71877989 71878209 + 1.5 NA exon (NM_006901, exon 31 of 42) exon (NM_006901, exon 31 of 42) 67545 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 208.5-23 chr4 60996425 60996673 + 1.5 NA Intergenic Intergenic 73930 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 329-10 chr15 57955816 57956113 + 1.5 NA intron (NM_170696, intron 11 of 11) intron (NM_170696, intron 11 of 11) 58059 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 264-18 chr3 163133130 163133397 + 1.5 NA Intergenic Intergenic 170038 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 238.5-11 chr12 99947819 99948069 + 1.5 NA intron (NM_152788, intron 1 of 25) MLT1E2|LTR|ERVL-MaLR 36710 NM_001352186 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 293-22 chr5 40207094 40207390 + 1.5 NA Intergenic L1MA7|LINE|L1 154951 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 290-20 chr22 25825424 25825671 + 1.5 NA intron (NM_001318245, intron 13 of 43) L1ME4a|LINE|L1 83359 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 333.5-3 chr11 77352486 77353047 + 1.5 NA intron (NM_001128620, intron 8 of 15) Tigger3c|DNA|TcMar-Tigger -51100 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 302.5-8 chr11 40065635 40065903 + 1.5 NA Intergenic Intergenic 227361 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 321.5-14 chr14 91293993 91294438 + 1.5 NA exon (NM_001080414, exon 23 of 30) exon (NM_001080414, exon 23 of 30) -40335 NM_001348437 8111 Hs.8882 NM_003485 ENSG00000119714 GPR68 AI2A6|GPR12A|OGR1 G protein-coupled receptor 68 protein-coding 264.5-35 chr7 80264895 80265160 + 1.5 NA Intergenic Intergenic 109412 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 192-27 chr9 95819135 95819364 + 1.5 NA intron (NR_023390, intron 2 of 2) AluSx|SINE|Alu -56442 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 295.5-16 chr2 145256265 145256695 + 1.5 NA Intergenic Intergenic 588513 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 557-6 chr12 31639488 31639984 + 1.5 NA Intergenic PRIMA41-int|LTR|ERV1 -7424 NM_001135864 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 324-26 chr3 119426717 119427078 + 1.5 NA Intergenic L1MA7|LINE|L1 36718 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 210.5-17 chr3 169941173 169941335 + 1.5 NA Intergenic Intergenic 25480 NR_027622 100128164 Hs.633070 NR_024409 ENSG00000239219 LOC100128164 - four and a half LIM domains 1 pseudogene pseudo 151.5-10 chr17 56188631 56188774 + 1.5 NA intron (NM_001365758, intron 2 of 20) MER21C|LTR|ERVL 35227 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 177.5-11 chr12 61149528 61149677 + 1.5 NA Intergenic HUERS-P3-int|LTR|ERV1 1043237 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 266-24 chr2 123016297 123016604 + 1.5 NA Intergenic Intergenic 57031 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 265.5-41 chr8 37535589 37535892 + 1.5 NA Intergenic L3|LINE|CR1 -14354 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 314.5-15 chr18 45344222 45344618 + 1.5 NA intron (NM_001371319, intron 4 of 23) MER21C|LTR|ERVL 131425 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 408-33 chr5 45727600 45727971 + 1.5 NA Intergenic Intergenic -31405 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 268-31 chr9 102436680 102436991 + 1.5 NA Intergenic LTR17|LTR|ERV1 -82802 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 315-22 chr22 31229955 31230336 + 1.5 NA intron (NM_005569, intron 2 of 15) HY3|scRNA|scRNA 17847 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 401.5-24 chr5 37300674 37301128 + 1.5 NA intron (NM_001278312, intron 29 of 33) AluSx|SINE|Alu -51473 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 181-17 chr7 20081782 20081951 + 1.5 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 58560 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 175-19 chr8 139484155 139484346 + 1.5 NA Intergenic Intergenic 218873 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 452.5-18 chr7 72199006 72199511 + 1.5 NA intron (NM_001363460, intron 2 of 5) AluSx1|SINE|Alu 138133 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 421-26 chr3 188686491 188687019 + 1.5 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -2026 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 433-26 chr5 143883800 143884142 + 1.5 NA Intergenic Intergenic 71810 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 114-2 chr2 37526316 37526407 + 1.5 NA Intergenic Intergenic 145838 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 238.5-8 chr11 44248704 44248973 + 1.5 NA 3' UTR (NM_001178083, exon 15 of 15) 3' UTR (NM_001178083, exon 15 of 15) 61301 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 231-6 chr14 60715066 60715371 + 1.5 NA intron (NM_017420, intron 2 of 2) intron (NM_017420, intron 2 of 2) 9133 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 247-28 chr8 122883068 122883303 + 1.5 NA intron (NM_001362797, intron 3 of 4) L2|LINE|L2 101530 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 380.5-25 chr5 163892808 163893238 + 1.5 NA Intergenic MER4B|LTR|ERV1 387404 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 253.5-11 chr16 5956010 5956318 + 1.5 NA Intergenic AluSz6|SINE|Alu -62860 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 445.5-14 chr22 25626921 25627364 + 1.5 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 62467 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 285-25 chr6 62401773 62402055 + 1.5 NA Intergenic L1MEg|LINE|L1 -115687 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 712-2 chr14 70739095 70739654 + 1.5 NA intron (NM_033141, intron 7 of 12) AluSc8|SINE|Alu 40676 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 444.5-15 chr4 84560581 84561035 + 1.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -22319 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 279.5-22 chr8 114603559 114603900 + 1.5 NA Intergenic Intergenic 1064284 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 165-14 chr9 69054893 69055087 + 1.5 NA intron (NM_000144, intron 3 of 4) intron (NM_000144, intron 3 of 4) 19238 NM_000144 2395 Hs.20685 NM_000144 ENSG00000165060 FXN CyaY|FA|FARR|FRDA|X25 frataxin protein-coding 412.5-13 chr19 7062007 7062435 + 1.5 NA Intergenic Intergenic -3587 NM_001164425 653657 Hs.448960 NM_001164425 ENSG00000182315 MBD3L3 - methyl-CpG binding domain protein 3 like 3 protein-coding 204.5-11 chr14 51838323 51838505 + 1.5 NA Intergenic AluSx|SINE|Alu -22198 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 275-7 chr10 67048364 67048630 + 1.5 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 36231 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 150.5-23 chr8 83137370 83137509 + 1.5 NA Intergenic Intergenic 225335 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 237 chr1 9653171 9653491 + 1.5 NA non-coding (NR_027045, exon 2 of 2) non-coding (NR_027045, exon 2 of 2) 1255 NR_027045 644997 Hs.568595 NM_001045478 ENSG00000179840 PIK3CD-AS1 C1orf200 PIK3CD antisense RNA 1 ncRNA 150.5-9 chr17 60082986 60083196 + 1.5 NA TTS (NR_030732) TTS (NR_030732) 3782 NR_135648 105371849 Hs.621935 NR_135648 ENSG00000267416 LOC105371849 - uncharacterized LOC105371849 ncRNA 282.5-28 chr7 45391020 45391330 + 1.5 NA Intergenic MER44D|DNA|TcMar-Tigger -182965 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 459-13 chr2 58845901 58846460 + 1.5 NA intron (NR_033873, intron 2 of 13) MIRb|SINE|MIR 325427 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 211.5-5 chr11 9189176 9189365 + 1.5 NA intron (NR_145966, intron 5 of 21) THE1B-int|LTR|ERVL-MaLR 76056 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 126 chr13 71820410 71820533 + 1.5 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 46721 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 123.5-13 chr6 105972016 105972190 + 1.5 NA Intergenic L1MB3|LINE|L1 -114233 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 302.5-36 chr7 16754956 16755189 + 1.5 NA intron (NM_014399, intron 1 of 5) intron (NM_014399, intron 1 of 5) 1317 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 206-3 chr10 60471782 60472052 + 1.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -82042 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 179.5-21 chr9 78382381 78382545 + 1.5 NA Intergenic Intergenic 85338 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 435-26 chr4 107552808 107553333 + 1.5 NA Intergenic MER121|DNA|hAT? 167164 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 263.5-3 chr10 100413613 100413916 + 1.5 NA Intergenic AluSx|SINE|Alu 40188 NR_026762 90271 Hs.628088 NR_026762 ENSG00000235823 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 314.5-25 chr3 180444448 180444869 + 1.5 NA Intergenic L2a|LINE|L2 30485 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 260.5-13 chr15 65380901 65381315 + 1.5 NA TTS (NM_020962) TTS (NM_020962) -3106 NM_004884 9543 Hs.128292 NM_004884 ENSG00000174498 IGDCC3 HsT18880|PUNC immunoglobulin superfamily DCC subclass member 3 protein-coding 217.5-10 chr11 132617038 132617366 + 1.5 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 326435 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 174-9 chr15 88829512 88829674 + 1.5 NA intron (NM_001369268, intron 1 of 18) intron (NM_001369268, intron 1 of 18) 26150 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 638.5-2 chr10 85522199 85522756 + 1.5 NA Intergenic L1MEf|LINE|L1 -55254 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 165.5 chr1 58993113 58993304 + 1.5 NA Intergenic Intergenic -27268 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 180.5-8 chr18 1396531 1396735 + 1.5 NA Intergenic Intergenic -37004 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 152.5-5 chr1 204628158 204628317 + 1.5 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 57501 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 372-30 chr3 188758548 188758903 + 1.5 NA intron (NM_001167672, intron 6 of 9) Charlie25|DNA|hAT-Charlie 69944 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 229-4 chr10 6737574 6737884 + 1.5 NA intron (NR_138480, intron 1 of 1) intron (NR_138480, intron 1 of 1) 347 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 278-10 chr14 80928986 80929315 + 1.5 NA intron (NM_152446, intron 2 of 24) L1PB3|LINE|L1 12588 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 277-40 chr5 174287323 174287600 + 1.5 NA Intergenic Intergenic -48893 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 382-17 chr16 86780157 86780694 + 1.5 NA Intergenic MIRb|SINE|MIR 58334 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 196-4 chr12 22755970 22756176 + 1.5 NA Intergenic Intergenic 130902 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 219-6 chr11 30604907 30605072 + 1.5 NA Intergenic L1MC4|LINE|L1 -18636 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 307.5-39 chr8 61831612 61832027 + 1.5 NA Intergenic L1PA13|LINE|L1 -58020 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 324-43 chr9 87460407 87460757 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -36646 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 251-7 chr14 60751265 60751448 + 1.5 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 16595 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 315-27 chr4 1780513 1780812 + 1.5 NA Intergenic AluSx4|SINE|Alu -12631 NM_001354809 2261 Hs.1420 NM_000142 ENSG00000068078 FGFR3 ACH|CD333|CEK2|HSFGFR3EX|JTK4 fibroblast growth factor receptor 3 protein-coding 168.5-32 chr8 132442517 132442711 + 1.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 4648 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 359.5-4 chr1 177646753 177647238 + 1.5 NA Intergenic Intergenic -53529 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 239-26 chr7 52824774 52825085 + 1.5 NA Intergenic Intergenic -210704 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 194.5-26 chr5 143215676 143215904 + 1.5 NA intron (NR_146198, intron 22 of 22) L1MB8|LINE|L1 23290 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 288-25 chr3 42706193 42706475 + 1.5 NA non-coding (NR_146957, exon 3 of 3) non-coding (NR_146957, exon 3 of 3) -3536 NM_020707 57467 Hs.476041 NM_020707 ENSG00000010282 HHATL C3orf3|GUP1|MBOAT3|MSTP002|OACT3 hedgehog acyltransferase like protein-coding 170-18 chr5 178616458 178616613 + 1.5 NA intron (NM_020666, intron 5 of 12) AluSx1|SINE|Alu 10515 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 320.5-9 chr15 47920346 47920578 + 1.5 NA Intergenic AluYh3|SINE|Alu -74226 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 176.5-28 chr6 94730728 94730974 + 1.5 NA Intergenic Intergenic 846600 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 313.5-43 chr8 141124689 141124938 + 1.5 NA Intergenic Intergenic -3776 NM_001362798 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 498-3 chr1 95375252 95375638 + 1.5 NA Intergenic L2c|LINE|L2 -23338 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 267.5-26 chr8 21635149 21635395 + 1.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR 153603 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 116.5-20 chr8 56656141 56656269 + 1.5 NA Intergenic Intergenic -96382 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 425-13 chr11 44222957 44223323 + 1.5 NA intron (NM_207122, intron 10 of 13) L1MD1|LINE|L1 86999 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 352-30 chr4 30594380 30594652 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -125853 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 655.5-6 chr17 33443913 33444578 + 1.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 89515 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 282.5-6 chr10 73248332 73248755 + 1.5 NA TTS (NM_016065) TTS (NM_016065) 1176 NR_038373 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 217-9 chr16 74968562 74968854 + 1.5 NA intron (NM_001324172, intron 1 of 13) AluSx|SINE|Alu 16415 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 248.5-12 chr18 72836382 72836581 + 1.5 NA intron (NM_001354021, intron 4 of 4) L2c|LINE|L2 16901 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 333-4 chr12 49202599 49203047 + 1.5 NA Intergenic Intergenic -13499 NM_001270399 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 343.5-23 chr22 47183115 47183553 + 1.5 NA Intergenic L1MA1|LINE|L1 -162237 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 200.5-20 chr2 76238429 76238617 + 1.5 NA Intergenic L1MA6|LINE|L1 -527608 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 175-2 chr10 124202390 124202595 + 1.5 NA Intergenic Intergenic -108894 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 127 chr10 103690794 103690911 + 1.5 NA intron (NM_014631, intron 6 of 13) MIR|SINE|MIR -12637 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 339-23 chr3 49524010 49524465 + 1.5 NA intron (NM_001177640, intron 3 of 3) intron (NM_001177640, intron 3 of 3) 30129 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-DT BSN-AS2 BSN divergent transcript ncRNA 290.5-13 chr16 6090292 6090605 + 1.5 NA intron (NM_018723, intron 1 of 15) MIRb|SINE|MIR 70745 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 582.5-11 chr6 165721434 165722034 + 1.5 NA Intergenic Intergenic -59454 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 333.5-15 chr22 35323324 35323809 + 1.5 NA exon (NM_005488, exon 5 of 15) exon (NM_005488, exon 5 of 15) -12074 NR_037471 100500826 NR_037471 ENSG00000266320 MIR3909 mir-3909 microRNA 3909 ncRNA 234.5-14 chr2 42871108 42871272 + 1.5 NA Intergenic AluJb|SINE|Alu -78607 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 173-12 chr22 31295359 31295474 + 1.5 NA Intergenic Intergenic -2882 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 128.5-26 chr8 26195244 26195415 + 1.5 NA Intergenic Intergenic -96179 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 317-25 chr6 113276699 113277062 + 1.5 NA Intergenic Intergenic 156567 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 326-24 chr20 47025125 47025475 + 1.5 NA intron (NM_172110, intron 5 of 13) Tigger9a|DNA|TcMar-Tigger 130457 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 279-19 chr2 239181079 239181334 + 1.5 NA intron (NM_006037, intron 4 of 26) intron (NM_006037, intron 4 of 26) 14251 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 271.5-30 chr5 16057988 16058344 + 1.5 NA Intergenic Intergenic 121625 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 400-32 chrX 3585226 3585584 + 1.5 NA Intergenic Intergenic -53154 NR_145722 109616969 NR_145722 ENSG00000212214 SNORA48B - small nucleolar RNA, H/ACA box 48B snoRNA 168-13 chr3 186224761 186224902 + 1.5 NA intron (NM_001346, intron 20 of 24) intron (NM_001346, intron 20 of 24) -115742 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 164.5-27 chr7 98899251 98899449 + 1.5 NA intron (NM_003496, intron 8 of 70) intron (NM_003496, intron 8 of 70) 17653 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 296-2 chr1 215145604 215145864 + 1.5 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 62997 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 389.5 chr1 45928393 45928720 + 1.5 NA intron (NM_001324320, intron 4 of 29) intron (NM_001324320, intron 4 of 29) 64208 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 241.5-25 chr4 40956748 40957071 + 1.5 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -99717 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 153-9 chr2 210002101 210002272 + 1.5 NA promoter-TSS (NM_006916) promoter-TSS (NM_006916) -379 NM_001278288 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 173.5-22 chr8 49245220 49245335 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 172933 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 407-11 chr12 123967317 123967840 + 1.5 NA intron (NM_001304958, intron 1 of 5) intron (NM_001304958, intron 1 of 5) 4481 NM_001304959 80212 Hs.114111 NM_025140 ENSG00000119242 CCDC92 - coiled-coil domain containing 92 protein-coding 147-4 chr21 42906163 42906342 + 1.5 NA intron (NM_021075, intron 3 of 3) intron (NM_021075, intron 3 of 3) 12943 NM_001001503 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 200-2 chr1 110362641 110362844 + 1.5 NA TTS (NM_001201547) TTS (NM_001201547) 23419 NM_022768 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 411.5-9 chr12 121508484 121508938 + 1.5 NA intron (NM_001005366, intron 11 of 22) MIRb|SINE|MIR -64359 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 170.5-23 chr8 32259637 32259880 + 1.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -180988 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 395-20 chr4 39596706 39597026 + 1.5 NA intron (NM_174921, intron 2 of 4) AluJb|SINE|Alu 30255 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 265-17 chr19 19280546 19280797 + 1.5 NA intron (NM_172231, intron 8 of 13) intron (NM_172231, intron 8 of 13) -7370 NM_001001524 53345 Hs.531624 NM_203510 ENSG00000213996 TM6SF2 - transmembrane 6 superfamily member 2 protein-coding 167 chr11 43379193 43379356 + 1.5 NA exon (NM_018259, exon 2 of 24) exon (NM_018259, exon 2 of 24) 20354 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 295-10 chr12 90559639 90559963 + 1.5 NA Intergenic L2a|LINE|L2 266483 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 182-9 chr2 69168903 69169031 + 1.5 NA intron (NM_032208, intron 13 of 17) intron (NM_032208, intron 13 of 17) 65285 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 248.5-29 chr8 49918116 49918328 + 1.5 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 6815 NR_135798 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 192-28 chrUn_KI270442v1 95992 96138 + 1.5 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 186-15 chr20 38094939 38095128 + 1.5 NA Intergenic LTR78|LTR|ERV1 61287 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 350.5-2 chr11 48103080 48103504 + 1.5 NA intron (NM_001098503, intron 1 of 8) AluJr|SINE|Alu 6510 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 355-38 chr7 11032664 11033084 + 1.5 NA intron (NR_033436, intron 6 of 16) MER5A|DNA|hAT-Charlie 59002 NR_033435 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 213-5 chr14 72364811 72364987 + 1.5 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -151921 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 422.5-8 chr2 219352096 219352487 + 1.5 NA Intergenic AluJr4|SINE|Alu -19114 NM_001007089 389075 Hs.290551 NM_001007089 ENSG00000182698 RESP18 - regulated endocrine specific protein 18 protein-coding 267-26 chr3 6609056 6609418 + 1.5 NA Intergenic L1ME1|LINE|L1 196212 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 374.5-25 chr9 32999045 32999517 + 1.5 NA intron (NM_001369005, intron 1 of 8) L2c|LINE|L2 2295 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 269.5-27 chr22 26832149 26832450 + 1.5 NA Intergenic Intergenic -27912 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 651.5 chr10 110216102 110216869 + 1.5 NA intron (NM_001008541, intron 1 of 4) intron (NM_001008541, intron 1 of 4) 6254 NM_001008541 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 368.5-27 chr7 22725944 22726295 + 1.5 NA non-coding (NR_131935, exon 2 of 2) non-coding (NR_131935, exon 2 of 2) -1081 NM_001318095 3569 Hs.654458 NM_000600 ENSG00000136244 IL6 BSF-2|BSF2|CDF|HGF|HSF|IFN-beta-2|IFNB2|IL-6 interleukin 6 protein-coding 244.5-11 chr14 38438473 38438769 + 1.5 NA Intergenic L1ME4a|LINE|L1 -182528 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 235-19 chr2 80318587 80318895 + 1.5 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 5362 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 295-8 chr11 37660119 37660369 + 1.5 NA Intergenic (ATACAT)n|Simple_repeat|Simple_repeat -278357 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 503-15 chr2 180293392 180293910 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -286354 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 289-29 chr3 101361815 101362130 + 1.5 NA intron (NM_020654, intron 10 of 23) intron (NM_020654, intron 10 of 23) -41397 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 291-30 chr8 104463920 104464310 + 1.5 NA intron (NM_001385, intron 1 of 9) intron (NM_001385, intron 1 of 9) 2940 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 324.5-2 chr1 107127353 107127713 + 1.5 NA Intergenic Intergenic -12555 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 369.5-8 chr17 14607070 14607316 + 1.5 NA Intergenic Intergenic 303453 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 447.5-14 chr3 60453939 60454634 + 1.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 163584 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 116-2 chr2 126421156 126421313 + 1.5 NA Intergenic Intergenic -234701 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 552-7 chr16 19982250 19982683 + 1.5 NA Intergenic Intergenic 91312 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 294.5-15 chr17 75302525 75302754 + 1.5 NA Intergenic AluSq2|SINE|Alu -13190 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 371-31 chr8 119047951 119048265 + 1.5 NA intron (NM_001324095, intron 3 of 7) L1PA16|LINE|L1 -19139 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 306-14 chr2 121965139 121965451 + 1.5 NA Intergenic Intergenic 209644 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 320.5-3 chr10 58803745 58804037 + 1.5 NA intron (NM_001080512, intron 15 of 20) intron (NM_001080512, intron 15 of 20) 88876 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 253-5 chr12 40969816 40970155 + 1.5 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 61628 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 235-38 chr8 143448756 143448951 + 1.5 NA intron (NM_015117, intron 9 of 11) MSTA-int|LTR|ERVL-MaLR -18121 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 298-21 chr5 24026088 24026443 + 1.5 NA intron (NR_131245, intron 4 of 4) L1PB1|LINE|L1 74917 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 205.5-4 chr11 62400485 62400695 + 1.5 NA Intergenic Intergenic -18443 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 446.5-13 chr3 107293916 107294281 + 1.5 NA intron (NR_028302, intron 2 of 3) L1ME1|LINE|L1 53406 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 236 chr1 69347559 69347780 + 1.5 NA Intergenic Intergenic -85586 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 184-6 chr3 164238408 164238601 + 1.5 NA Intergenic L2a|LINE|L2 -66948 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 222-17 chr2 200314049 200314262 + 1.5 NA intron (NM_001282744, intron 1 of 12) L2|LINE|L2 5205 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 166-2 chr10 86256833 86257010 + 1.5 NA intron (NM_017551, intron 2 of 15) LTR33|LTR|ERVL 7867 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 268-32 chr9 108755346 108755596 + 1.5 NA Intergenic Intergenic 100515 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 227.5-26 chr7 28990769 28991022 + 1.5 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 10928 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 393-33 chr7 36036170 36036607 + 1.5 NA Intergenic AluJr|SINE|Alu -58922 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 249-20 chr22 25166373 25166712 + 1.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -33316 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 234.5-23 chr4 71646758 71647044 + 1.5 NA Intergenic MER4D|LTR|ERV1 137178 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 350.5-12 chr6 4294284 4294677 + 1.5 NA Intergenic Intergenic -104451 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 491.5-5 chr11 57916205 57916718 + 1.5 NA Intergenic MIRb|SINE|MIR -107420 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 355.5-11 chr2 200237689 200238115 + 1.5 NA Intergenic AluJr|SINE|Alu -67977 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 166.5-8 chr2 77574449 77574591 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -52087 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 165.5-15 chr4 89208133 89208243 + 1.5 NA Intergenic L1MB2|LINE|L1 95371 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 249.5-33 chr7 13796173 13796438 + 1.5 NA Intergenic Intergenic 190209 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 499.5-15 chr3 110489840 110490347 + 1.5 NA Intergenic Intergenic 579866 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 170-2 chr1 96539884 96540077 + 1.5 NA Intergenic Intergenic -165855 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 352-29 chr3 149815210 149815690 + 1.5 NA intron (NM_007282, intron 2 of 10) intron (NM_007282, intron 2 of 10) 2762 NM_183381 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 214.5-36 chr8 136465677 136466005 + 1.5 NA Intergenic MER94|DNA|hAT-Blackjack -64957 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 289.5-25 chr2 222039575 222039935 + 1.5 NA Intergenic Intergenic -258392 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 321-32 chr9 76441740 76442175 + 1.5 NA 5' UTR (NM_001097634, exon 1 of 3) 5' UTR (NM_001097634, exon 1 of 3) 291 NM_001097634 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 230.5-50 chr7 20156440 20156654 + 1.5 NA intron (NM_182762, intron 5 of 6) intron (NM_182762, intron 5 of 6) 14631 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 571-23 chr8 126505040 126505895 + 1.5 NA Intergenic Intergenic 53011 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 523-14 chr18 40017654 40018231 + 1.5 NA Intergenic Intergenic -48344 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 140.5-19 chr21 37633035 37633153 + 1.5 NA intron (NM_002240, intron 3 of 3) L1ME3F|LINE|L1 212795 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 644-9 chr8 130491377 130492187 + 1.5 NA Intergenic Intergenic -48108 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 469.5-11 chr2 48427757 48428340 + 1.5 NA Intergenic Intergenic -12718 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 218-28 chr5 166949149 166949346 + 1.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -22877 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 202-4 chr13 51269420 51269609 + 1.5 NA intron (NM_001242312, intron 3 of 3) MamRep1151|LTR?|LTR? 47116 NM_145019 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 479-5 chr12 45663932 45664628 + 1.5 NA Intergenic L2c|LINE|L2 63641 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 158.5-17 chr3 67104952 67105133 + 1.5 NA Intergenic L1MC3|LINE|L1 106735 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 258.5-20 chr5 40402669 40402959 + 1.5 NA Intergenic Intergenic -277101 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 215.5-29 chr3 111638573 111638859 + 1.5 NA intron (NR_134917, intron 12 of 14) intron (NR_134917, intron 12 of 14) -35960 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 351-22 chr2 142047568 142047866 + 1.5 NA intron (NM_018557, intron 1 of 90) MLT1J2|LTR|ERVL-MaLR 83984 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 281.5-4 chr10 117207814 117208096 + 1.5 NA intron (NM_181840, intron 2 of 2) intron (NM_181840, intron 2 of 2) 10466 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 390.5-24 chr5 106157616 106158007 + 1.5 NA Intergenic Intergenic 853203 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 234-13 chr2 144133117 144133300 + 1.5 NA intron (NM_001354350, intron 6 of 14) (AT)n|Simple_repeat|Simple_repeat 78371 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 366.5-36 chr9 117289498 117289794 + 1.5 NA intron (NM_014010, intron 2 of 21) intron (NM_014010, intron 2 of 21) -108445 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 124-5 chr6 126196939 126197021 + 1.5 NA Intergenic Intergenic -142809 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 342.5-10 chr14 68700440 68700851 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -71858 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 292.5-15 chr17 65190191 65190527 + 1.5 NA intron (NM_003835, intron 11 of 18) intron (NM_003835, intron 11 of 18) 52989 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 349.5-27 chr6 56802223 56802677 + 1.5 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 41215 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 326.5-12 chr14 48275853 48276123 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -480974 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 288.5-2 chr1 94335827 94336230 + 1.5 NA Intergenic Intergenic -82349 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 260.5-33 chr8 63780091 63780341 + 1.5 NA non-coding (NR_038875, exon 2 of 3) non-coding (NR_038875, exon 2 of 3) 10786 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 217-19 chr3 114747297 114747518 + 1.5 NA intron (NM_001164343, intron 4 of 11) AluSx|SINE|Alu -3882 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 325-15 chr3 10966813 10967130 + 1.5 NA Intergenic LTR16C|LTR|ERVL -25763 NM_001348251 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 324.5-39 chrX 153648488 153648930 + 1.5 NA intron (NM_001318503, intron 2 of 3) AluJb|SINE|Alu 1506 NM_001318503 1852 Hs.144879 NM_001395 ENSG00000130829 DUSP9 MKP-4|MKP4 dual specificity phosphatase 9 protein-coding 216-7 chr14 66929888 66930164 + 1.5 NA intron (NM_020806, intron 8 of 22) L1MA3|LINE|L1 -259414 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 150-5 chr3 14813613 14813762 + 1.5 NA Intergenic MIR3|SINE|MIR -2273 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 192.5-17 chr2 233691373 233691506 + 1.5 NA promoter-TSS (NM_205862) promoter-TSS (NM_205862) -231 NM_205862 54578 Hs.554822 NM_001072 ENSG00000167165 UGT1A6 GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT-1A|UGT-1C|UGT-1E|UGT1|UGT1-01|UGT1-03|UGT1-05|UGT1.1|UGT1.3|UGT1.5|UGT1A|UGT1A1|UGT1A3|UGT1A5|UGT1A6S|UGT1C|UGT1E|UGT1F|hUG-BR1 UDP glucuronosyltransferase family 1 member A6 protein-coding 412-29 chr7 106075321 106075640 + 1.5 NA Intergenic AluSx1|SINE|Alu 36832 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 200-9 chr14 74884278 74884455 + 1.5 NA intron (NR_045209, intron 2 of 13) intron (NR_045209, intron 2 of 13) 2450 NR_033814 1743 Hs.525459 NM_001933 ENSG00000119689 DLST DLTS dihydrolipoamide S-succinyltransferase protein-coding 490-2 chr10 109126684 109127083 + 1.5 NA Intergenic Intergenic 796363 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 449-32 chr8 57772596 57773179 + 1.5 NA Intergenic L1PA8|LINE|L1 26738 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 315.5-6 chr1 246892181 246892459 + 1.5 NA intron (NM_015446, intron 14 of 35) AluSx|SINE|Alu 39038 NM_015446 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 302-33 chr8 80140581 80140835 + 1.5 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 30413 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 260-24 chr3 117481581 117481773 + 1.5 NA Intergenic Intergenic 209248 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 218-6 chr10 119710036 119710293 + 1.5 NA Intergenic FLAM_C|SINE|Alu -15883 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 381-15 chr3 169815331 169815747 + 1.5 NA Intergenic L1M1|LINE|L1 -2635 NM_001363888 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 426.5-20 chr5 37288415 37288820 + 1.5 NA 3' UTR (NM_153485, exon 35 of 35) 3' UTR (NM_153485, exon 35 of 35) -39189 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 335.5-30 chr7 80880557 80880949 + 1.5 NA intron (NM_006379, intron 2 of 17) AluSx1|SINE|Alu 38298 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 457-23 chr5 51338060 51338458 + 1.5 NA Intergenic Intergenic 45073 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 152-6 chr2 153109660 153109845 + 1.5 NA Intergenic Intergenic 369010 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 254.5-41 chr6 38664623 38664913 + 1.5 NA Intergenic L1MB8|LINE|L1 -24839 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 303.5-28 chr8 56508007 56508281 + 1.5 NA intron (NR_125813, intron 2 of 3) AluJb|SINE|Alu 51679 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 257-19 chr18 11049032 11049231 + 1.5 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 99631 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 548-14 chr22 30529152 30529728 + 1.5 NA intron (NM_001193336, intron 6 of 11) intron (NM_001193336, intron 6 of 11) 13214 NM_001353443 730005 Hs.505605 NM_001193336 ENSG00000214491 SEC14L6 - SEC14 like lipid binding 6 protein-coding 213.5-20 chr2 101026828 101027051 + 1.5 NA intron (NM_001102426, intron 15 of 19) intron (NM_001102426, intron 15 of 19) 24650 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 140.5-18 chr21 19622415 19622527 + 1.5 NA Intergenic Intergenic 277284 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 325.5-4 chr10 54594741 54594977 + 1.5 NA intron (NR_134503, intron 2 of 5) L1PA16|LINE|L1 13098 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 197-17 chr3 13893354 13893539 + 1.5 NA Intergenic HAL1b|LINE|L1 -13375 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 129.5-13 chr3 87157545 87157688 + 1.5 NA TTS (NR_104153) TTS (NR_104153) 68336 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 559-7 chr16 3431982 3432684 + 1.5 NA TTS (NM_152457) TTS (NM_152457) 11171 NM_152457 146434 Hs.88630 NM_152457 ENSG00000167981 ZNF597 HIT-4 zinc finger protein 597 protein-coding 121.5-16 chr5 24744496 24744582 + 1.5 NA Intergenic Intergenic 96044 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 396-26 chr6 5763004 5763593 + 1.5 NA intron (NM_006567, intron 6 of 6) AluJo|SINE|Alu -68026 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 412-15 chr2 38242780 38243291 + 1.5 NA Intergenic Intergenic 111930 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 489.5-22 chr8 99129786 99130384 + 1.5 NA intron (NM_017890, intron 8 of 61) intron (NM_017890, intron 8 of 61) 116819 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 202.5-13 chr15 69207198 69207446 + 1.5 NA intron (NM_001324094, intron 2 of 5) L1MD3|LINE|L1 46687 NM_001324093 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 219.5-19 chr20 36428531 36428769 + 1.5 NA intron (NM_001365621, intron 2 of 12) intron (NM_001365621, intron 2 of 12) -32818 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 334-9 chr14 31190091 31190501 + 1.5 NA intron (NM_015382, intron 2 of 42) MLT1G3|LTR|ERVL-MaLR 17497 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 195-21 chr7 50952248 50952449 + 1.5 NA Intergenic MIRb|SINE|MIR -158895 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 222.5-34 chr9 38623880 38624150 + 1.5 NA TTS (NR_027294) TTS (NR_027294) 2927 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 262-10 chr11 74799610 74799861 + 1.5 NA intron (NM_001098638, intron 2 of 5) intron (NM_001098638, intron 2 of 5) 50886 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 635.5 chr10 10503996 10504430 + 1.5 NA intron (NM_001326317, intron 1 of 14) L1MD1|LINE|L1 41663 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 221-10 chr17 61326807 61327036 + 1.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 40783 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 244.5-5 chr10 81404830 81405162 + 1.5 NA Intergenic Intergenic -470198 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 460.5-13 chr19 44608608 44609092 + 1.5 NA Intergenic AluSx1|SINE|Alu -4713 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily member 23 protein-coding 303.5-7 chr16 50073387 50073711 + 1.5 NA intron (NR_138092, intron 5 of 15) intron (NR_138092, intron 5 of 15) 7579 NR_138093 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 166-3 chr12 45948960 45949097 + 1.5 NA intron (NM_004719, intron 4 of 14) intron (NM_004719, intron 4 of 14) 41546 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 408.5-24 chr9 133459933 133460268 + 1.5 NA TTS (NM_139026).2 TTS (NM_139026).2 122 NM_001135775 11094 Hs.62003 NM_017586 ENSG00000160325 CACFD1 C9orf7|D9S2135|FLOWER calcium channel flower domain containing 1 protein-coding 530.5-7 chr2 145080267 145080884 + 1.5 NA Intergenic Intergenic 412608 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 307.5-28 chr5 4482813 4483129 + 1.5 NA Intergenic L1MEc|LINE|L1 -290510 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 473-6 chr12 97642583 97643139 + 1.5 NA Intergenic Intergenic 79049 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 164-12 chr8 111432828 111432970 + 1.5 NA intron (NR_146282, intron 2 of 3) L1M5|LINE|L1 56260 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 458-32 chr9 81679373 81679904 + 1.5 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 9897 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 165-11 chr7 54339712 54339855 + 1.5 NA intron (NR_120516, intron 1 of 2) Charlie1|DNA|hAT-Charlie 9086 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 509-12 chr20 55589982 55590501 + 1.5 NA Intergenic Intergenic -163044 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 587.5 chr1 109184728 109185259 + 1.5 NA intron (NM_001284352, intron 6 of 20) intron (NM_001284352, intron 6 of 20) -1556 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 375.5-26 chr8 130022581 130022907 + 1.5 NA Intergenic Intergenic -5615 NM_001353269 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 227-29 chr5 59466719 59466902 + 1.5 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -109840 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 300.5-8 chr10 78685567 78685800 + 1.5 NA Intergenic Intergenic 381765 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 319.5-10 chr14 64234319 64234640 + 1.5 NA intron (NM_001437, intron 8 of 8) intron (NM_001437, intron 8 of 8) 18525 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 360-27 chr20 47218647 47218988 + 1.5 NA intron (NM_001281774, intron 22 of 23) intron (NM_001281774, intron 22 of 23) 51850 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 285.5-11 chr2 106725199 106725500 + 1.5 NA Intergenic Intergenic 160679 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 292.5-36 chr9 114898799 114899045 + 1.5 NA intron (NM_001252290, intron 4 of 4) LTR67B|LTR|ERVL 31673 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 178-11 chr2 54710601 54710840 + 1.5 NA Intergenic MIR|SINE|MIR -14292 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 365-23 chr5 116146626 116147157 + 1.5 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 61429 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 206-20 chr6 34584452 34584688 + 1.5 NA Intergenic L2a|LINE|L2 -28237 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 338.5-5 chr10 21930772 21931044 + 1.5 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 72822 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 229.5-40 chr7 5621626 5621929 + 1.5 NA 3' UTR (NM_207116, exon 17 of 17) 3' UTR (NM_207116, exon 17 of 17) 28961 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 184-9 chr5 75963296 75963572 + 1.5 NA Intergenic HAL1ME|LINE|L1 -119949 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 174.5-2 chr1 43660086 43660241 + 1.5 NA intron (NM_014663, intron 3 of 21) intron (NM_014663, intron 3 of 21) 10014 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 456.5-7 chr14 81134667 81135096 + 1.5 NA intron (NM_000369, intron 8 of 9) HAL1|LINE|L1 67953 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 481-14 chr4 109600077 109600580 + 1.5 NA intron (NM_017918, intron 1 of 7) intron (NM_017918, intron 1 of 7) 40082 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 267-24 chr21 33314582 33314795 + 1.5 NA Intergenic L2|LINE|L2 -10282 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 270.5-5 chr10 114474964 114475240 + 1.5 NA intron (NM_001352440, intron 8 of 20) intron (NM_001352440, intron 8 of 20) 51811 NM_001322897 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 210-7 chr14 77587117 77587348 + 1.5 NA intron (NM_004863, intron 2 of 11) AluY|SINE|Alu 29535 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 225.5-29 chr3 135653042 135653347 + 1.5 NA Intergenic Intergenic -312534 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 180-16 chr8 101615892 101616070 + 1.5 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 123542 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 113.5-4 chr18 3478194 3478312 + 1.5 NA intron (NR_110429, intron 2 of 2) intron (NR_110429, intron 2 of 2) 12003 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 351-27 chr22 27255916 27256379 + 1.5 NA Intergenic Intergenic -31468 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 136-2 chr1 190976975 190977089 + 1.5 NA Intergenic Intergenic 251466 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 201.5-6 chr11 90344366 90344644 + 1.5 NA intron (NR_104190, intron 1 of 6) AluJb|SINE|Alu 93273 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 285.5-27 chr6 70933364 70933665 + 1.5 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 23546 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 491.5 chr1 80778742 80779192 + 1.5 NA Intergenic L1PA15|LINE|L1 137680 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 400.5-31 chr9 32968687 32969242 + 1.5 NA Intergenic Intergenic 32612 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 348-6 chr10 101934286 101934600 + 1.5 NA intron (NM_024541, intron 23 of 25) intron (NM_024541, intron 23 of 25) -90523 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 307.5-2 chr1 157605792 157606066 + 1.5 NA Intergenic L1MA4|LINE|L1 -7844 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 201-16 chr3 69701202 69701386 + 1.5 NA Intergenic L2|LINE|L2 -38170 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 255.5 chr1 99169385 99169577 + 1.5 NA Intergenic AluSx1|SINE|Alu -94811 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 179.5-15 chr5 103071233 103071387 + 1.5 NA Intergenic L1MA9|LINE|L1 48828 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 238.5-7 chr11 5830664 5830872 + 1.5 NA Intergenic L1PBa1|LINE|L1 10432 NM_001005174 390077 Hs.553737 NM_001005174 ENSG00000180988 OR52N2 OR11-57 olfactory receptor family 52 subfamily N member 2 protein-coding 193.5-6 chr10 22672689 22672877 + 1.5 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 41325 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 224-4 chr11 682614 682840 + 1.5 NA intron (NM_001367390, intron 6 of 11) L1M4b|LINE|L1 -12864 NM_001042463 283232 Hs.448664 NM_174940 ENSG00000177042 TMEM80 - transmembrane protein 80 protein-coding 159.5-19 chr20 35359621 35359769 + 1.5 NA intron (NM_001184977, intron 4 of 7) intron (NM_001184977, intron 4 of 7) 52278 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 218.5-31 chr7 79559127 79559288 + 1.5 NA Intergenic L1MEf|LINE|L1 105247 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 209-13 chr2 108486484 108486648 + 1.5 NA exon (NM_181453, exon 16 of 23) exon (NM_181453, exon 16 of 23) 37360 NR_028063 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 268-9 chr17 71368250 71368687 + 1.5 NA Intergenic Intergenic -166289 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 376.5-10 chr17 70657182 70657483 + 1.5 NA Intergenic Intergenic 487797 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 513.5-16 chr4 28343301 28343995 + 1.5 NA Intergenic Intergenic -475934 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 200-14 chr20 13575030 13575265 + 1.5 NA intron (NM_017714, intron 6 of 13) L1MEc|LINE|L1 63785 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 365-17 chr20 15254000 15254377 + 1.5 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 57348 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 156-15 chr5 16689366 16689492 + 1.5 NA intron (NM_012334, intron 28 of 40) intron (NM_012334, intron 28 of 40) -72371 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 398-12 chr16 76702196 76702592 + 1.5 NA Intergenic Intergenic 67396 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 261.5-17 chr18 22683338 22683734 + 1.5 NA Intergenic Intergenic 103301 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 227-21 chr2 149278216 149278403 + 1.5 NA Intergenic Intergenic -51676 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 299.5-33 chr8 127851337 127851657 + 1.5 NA intron (NR_003367, intron 1 of 8) MIRb|SINE|MIR 55535 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 164-5 chr14 80387562 80387734 + 1.5 NA intron (NR_038355, intron 5 of 8) intron (NR_038355, intron 5 of 8) -156591 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 199-10 chr2 64212598 64212746 + 1.5 NA Intergenic Intergenic -7187 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 333-25 chr3 113302757 113303092 + 1.5 NA intron (NM_001164496, intron 32 of 34) L1ME3C|LINE|L1 90808 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 284-30 chr5 2625220 2625444 + 1.5 NA Intergenic Intergenic -87259 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 254-40 chr7 138332863 138333032 + 1.5 NA Intergenic HERVH-int|LTR|ERV1 -127312 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 462-39 chr9 75721722 75722310 + 1.5 NA Intergenic L1M5|LINE|L1 -168628 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 315-38 chr7 128197114 128197643 + 1.5 NA Intergenic (AGAGAC)n|Simple_repeat|Simple_repeat -10494 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 146.5-36 chr9 27915033 27915130 + 1.5 NA Intergenic Intergenic -341215 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 353.5-14 chr19 5960428 5960806 + 1.5 NA intron (NM_003624, intron 1 of 16) intron (NM_003624, intron 1 of 16) 17523 NM_007320 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 448-9 chr14 64206147 64206749 + 1.5 NA intron (NM_015180, intron 100 of 114) intron (NM_015180, intron 100 of 114) -7696 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 255.5-19 chr4 76160792 76161103 + 1.5 NA 3' UTR (NM_005506, exon 12 of 12) 3' UTR (NM_005506, exon 12 of 12) -12432 NR_103781 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 268.5-24 chr5 57489039 57489255 + 1.5 NA Intergenic Intergenic -6336 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 269.5-17 chr15 86371101 86371321 + 1.5 NA intron (NM_152336, intron 17 of 24) L2|LINE|L2 -54243 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 171-9 chr2 196387340 196387519 + 1.5 NA intron (NM_020760, intron 2 of 28) MLT1A0|LTR|ERVL-MaLR -25252 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 287.5-25 chr7 95890551 95890782 + 1.5 NA intron (NM_004411, intron 6 of 16) MER5A|DNA|hAT-Charlie 118160 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 145-2 chr12 9994036 9994214 + 1.5 NA intron (NM_001099431, intron 4 of 4) L2a|LINE|L2 5175 NM_016509 51266 Hs.409794 NM_016509 ENSG00000165682 CLEC1B 1810061I13Rik|CLEC2|CLEC2B|PRO1384|QDED721 C-type lectin domain family 1 member B protein-coding 275-39 chr8 83743238 83743643 + 1.5 NA Intergenic Intergenic 339682 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 175.5-31 chr9 104756521 104756663 + 1.5 NA intron (NM_015469, intron 4 of 5) intron (NM_015469, intron 4 of 5) -7149 NR_130759 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 176.5-26 chr6 1449097 1449328 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -58801 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 281.5-19 chr3 32337288 32337594 + 1.5 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) -54412 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 181.5-30 chr7 12522929 12523106 + 1.5 NA intron (NR_136263, intron 1 of 3) intron (NR_136263, intron 1 of 3) 18620 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 199.5-14 chr17 72435826 72436005 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 93104 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 267.5-21 chr5 26432164 26432576 + 1.5 NA Intergenic L1M5|LINE|L1 606216 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 260-7 chr12 16951265 16951658 + 1.5 NA Intergenic Intergenic -37286 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 188-14 chr4 46134956 46135171 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -11009 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 200.5-14 chr14 100580983 100581165 + 1.5 NA Intergenic MIRb|SINE|MIR -11282 NM_020836 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 169.5-2 chr1 94120109 94120238 + 1.5 NA intron (NM_000350, intron 1 of 49) intron (NM_000350, intron 1 of 49) 975 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 389.5-26 chr4 180618287 180618841 + 1.5 NA Intergenic Intergenic 540585 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 175.5-11 chr2 50658006 50658276 + 1.5 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 38121 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 365.5 chr1 59755564 59756084 + 1.5 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) -16971 NR_110627 101926944 Hs.720353 NR_110627 LOC101926944 - uncharacterized LOC101926944 ncRNA 323.5-17 chr2 194663081 194663368 + 1.5 NA Intergenic Intergenic -67371 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 320.5-36 chr9 85170939 85171280 + 1.5 NA Intergenic LTR37A|LTR|ERV1 465208 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 454.5-30 chr8 123279189 123279629 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -3868 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 289-23 chr2 62024724 62025011 + 1.5 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) 119225 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 243.5-30 chr6 64320006 64320362 + 1.5 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 513348 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 208-18 chr5 75246858 75247209 + 1.5 NA Intergenic AluSp|SINE|Alu -10155 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 267-36 chr4 97185573 97185880 + 1.5 NA Intergenic Intergenic -181200 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 222.5-31 chr8 130835113 130835283 + 1.5 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 205711 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 281.5-24 chr4 188010496 188010828 + 1.5 NA Intergenic AluSc8|SINE|Alu 14891 NM_174900 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 290-6 chr11 112586246 112586566 + 1.5 NA Intergenic Intergenic -30604 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 310.5-15 chr15 38509803 38510111 + 1.5 NA intron (NM_001306086, intron 8 of 14) Tigger10|DNA|TcMar-Tigger 54857 NM_005739 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 216.5-20 chr2 80683626 80683860 + 1.5 NA Intergenic Intergenic 370364 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 263-15 chr20 42825124 42825565 + 1.5 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 139861 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 417-33 chr4 157837752 157838331 + 1.5 NA Intergenic AluSq2|SINE|Alu 265551 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 165.5-5 chr11 12425967 12426093 + 1.5 NA intron (NM_018222, intron 1 of 12) L2b|LINE|L2 48459 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 281.5-33 chr5 132621797 132622148 + 1.5 NA intron (NM_005732, intron 21 of 24) L1ME3F|LINE|L1 19818 NR_132124 101927761 Hs.598812 NR_132124 ENSG00000223442 TH2LCRR TH2-LCR T helper type 2 locus control region associated RNA ncRNA 218.5 chr1 242627006 242627247 + 1.5 NA Intergenic LTR16A1|LTR|ERVL -102429 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 277-45 chr7 22747749 22748139 + 1.5 NA Intergenic Intergenic -20324 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 253.5-20 chr20 12639266 12639600 + 1.5 NA Intergenic MIRb|SINE|MIR 297530 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 414.5-6 chr11 106597093 106597602 + 1.5 NA Intergenic L1ME4b|LINE|L1 345940 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 421.5-17 chr22 39905625 39905951 + 1.5 NA intron (NM_004810, intron 1 of 7) MIR|SINE|MIR 4704 NM_004810 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 483-25 chr5 99201368 99201852 + 1.5 NA Intergenic SATR1|Satellite|Satellite -271896 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 428.5-19 chr5 26566852 26567285 + 1.5 NA Intergenic Intergenic 471518 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 136.5-12 chr21 30970272 30970424 + 1.5 NA Intergenic Intergenic 68128 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 123-7 chrX 64379138 64379296 + 1.5 NA intron (NM_017677, intron 1 of 13) L1MC|LINE|L1 16235 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 265-37 chr8 142649454 142649668 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 10965 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 403.5-24 chr8 133646970 133647546 + 1.5 NA Intergenic Intergenic 36808 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 453-22 chr3 21806269 21806676 + 1.5 NA Intergenic AluY|SINE|Alu -55262 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 323-18 chr2 42699252 42699696 + 1.5 NA intron (NM_001330443, intron 11 of 16) L2|LINE|L2 64787 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 141.5-15 chr3 196477385 196477485 + 1.5 NA intron (NM_152617, intron 4 of 5) intron (NM_152617, intron 4 of 5) 26333 NM_152617 165918 Hs.250648 NM_152617 ENSG00000163961 RNF168 hRNF168 ring finger protein 168 protein-coding 243-20 chr2 191598072 191598235 + 1.5 NA Intergenic AluSc|SINE|Alu -79919 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 279.5-11 chr3 173381027 173381493 + 1.5 NA Intergenic Intergenic -14692 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 181.5-17 chr2 67528013 67528208 + 1.5 NA Intergenic L1MC1|LINE|L1 130777 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 371-28 chr7 81697080 81697578 + 1.5 NA Intergenic Intergenic -5923 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 785.5-6 chr4 72482894 72483780 + 1.5 NA intron (NM_014243, intron 3 of 21) L1ME1|LINE|L1 85884 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 422.5-10 chr20 41304267 41304634 + 1.5 NA Intergenic L2-3_Crp|LINE|L2 -4330 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 376.5 chr1 233598271 233598689 + 1.5 NA Intergenic Intergenic -15626 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 349-10 chr10 117045462 117045851 + 1.5 NA intron (NM_001258300, intron 2 of 17) L1MCb|LINE|L1 -40079 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 284-5 chr10 23556883 23557210 + 1.5 NA Intergenic LTR88c|LTR|Gypsy? 117777 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 457.5-21 chr4 111748551 111748939 + 1.5 NA Intergenic Intergenic -396709 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 326-11 chr11 65570381 65570758 + 1.5 NA promoter-TSS (NR_038923) promoter-TSS (NR_038923) 92 NM_006396 10534 Hs.25723 NM_006396 ENSG00000173465 ZNRD2 SSSCA1|p27 zinc ribbon domain containing 2 protein-coding 191.5-18 chr4 41509291 41509452 + 1.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -28786 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 154.5-8 chr14 67448365 67448529 + 1.5 NA Intergenic Intergenic -6517 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 268.5 chr1 181550088 181550390 + 1.5 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 66722 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 262.5-29 chr9 31032137 31032375 + 1.5 NA Intergenic Intergenic 349234 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 465-4 chr1 48934623 48935118 + 1.5 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -157901 NM_001349795 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 257-7 chr12 13382904 13383118 + 1.5 NA Intergenic MER4CL34|LTR|ERV1 -6266 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 263-17 chr4 43951388 43951630 + 1.5 NA Intergenic L1PA6|LINE|L1 -65352 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 331-20 chr15 66495054 66495520 + 1.5 NA intron (NM_001329613, intron 1 of 1) intron (NM_001329613, intron 1 of 1) 1747 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 249-4 chr10 119025539 119025802 + 1.5 NA Intergenic Intergenic -4044 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 319 chr1 14699297 14699567 + 1.5 NA intron (NM_201628, intron 1 of 14) L2a|LINE|L2 100715 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 179.5-14 chr4_GL000008v2_random 3926 4048 + 1.5 NA Intergenic Intergenic 174184 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 263.5-29 chr8 137268496 137268766 + 1.5 NA Intergenic L1MC4a|LINE|L1 144957 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 165-7 chr3 117334983 117335093 + 1.5 NA Intergenic Intergenic 355887 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 385-27 chr4 28366857 28367223 + 1.5 NA Intergenic MER5C|DNA|hAT-Charlie -452542 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 260.5-30 chr6 38039703 38039986 + 1.5 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 220117 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 340.5-33 chrX 84640451 84640706 + 1.5 NA Intergenic L1PB1|LINE|L1 -138125 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 340-9 chr10 129883796 129884070 + 1.5 NA intron (NM_001005463, intron 6 of 15) intron (NM_001005463, intron 6 of 15) -40559 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 333.5-21 chr8 66422890 66423139 + 1.5 NA non-coding (NR_040434, exon 3 of 3) non-coding (NR_040434, exon 3 of 3) 5963 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 372-12 chr12 1321583 1322021 + 1.5 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -178689 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 230.5-51 chr7 91869887 91870253 + 1.5 NA TTS (NM_006980) TTS (NM_006980) 10632 NM_001301134 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 355 chr1 38981612 38981895 + 1.5 NA Intergenic LOR1b|LTR|ERV1 -9491 NM_001136275 79647 Hs.293563 NM_024595 ENSG00000174574 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 442-18 chr6 142331882 142332365 + 1.5 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 30116 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 167-5 chr16 10681403 10681514 + 1.5 NA intron (NM_144674, intron 4 of 6) SVA_E|Retroposon|SVA 13472 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 291.5-5 chr10 112982826 112983174 + 1.5 NA intron (NM_001367943, intron 4 of 14) intron (NM_001367943, intron 4 of 14) 32750 NM_001146285 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 334-18 chr22 44212216 44212535 + 1.5 NA Intergenic Intergenic 31450 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 472.5-18 chr7 36159977 36160341 + 1.5 NA intron (NM_030636, intron 2 of 7) L2b|LINE|L2 6905 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 225-14 chr15 51854423 51854672 + 1.5 NA intron (NM_014547, intron 1 of 9) intron (NM_014547, intron 1 of 9) 24894 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 603.5 chr14 78990431 78991208 + 1.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -209163 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 402.5-6 chr14 35789952 35790462 + 1.5 NA intron (NM_014990, intron 1 of 40) AluSz6|SINE|Alu 19088 NM_001346245 253959 Hs.113150 NM_014990 ENSG00000174373 RALGAPA1 GARNL1|GRIPE|RalGAPalpha1|TULIP1|p240 Ral GTPase activating protein catalytic alpha subunit 1 protein-coding 154.5-27 chr8 109888396 109888600 + 1.5 NA Intergenic Intergenic 87273 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 207.5-7 chr10 76365104 76365242 + 1.5 NA intron (NM_001305581, intron 6 of 6) L1PB3|LINE|L1 -522871 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 410.5-24 chrX 15565474 15566000 + 1.5 NA intron (NM_021804, intron 17 of 18) LTR16C|LTR|ERVL 35223 NM_001371415 274-24 chr4 61524000 61524379 + 1.5 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 322017 NM_001371342 130.5-9 chr17 62340005 62340143 + 1.5 NA Intergenic Intergenic -30144 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 222.5-25 chr5 61185175 61185349 + 1.5 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) -22794 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 168-3 chr11 80988827 80989051 + 1.5 NA Intergenic L2a|LINE|L2 -226136 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 160.5-3 chr1 96197194 96197352 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 176852 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 437-33 chr4 115242190 115242642 + 1.5 NA Intergenic ERVL-int|LTR|ERVL -128796 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 337-25 chr6 40378747 40379117 + 1.5 NA intron (NR_160960, intron 2 of 2) intron (NR_160960, intron 2 of 2) 595 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 236.5-27 chr4 122976928 122977248 + 1.5 NA intron (NM_001317799, intron 9 of 10) intron (NM_001317799, intron 9 of 10) 54010 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 416-14 chr17 59568403 59568821 + 1.5 NA intron (NM_024612, intron 2 of 17) MER44A|DNA|TcMar-Tigger 3002 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 287.5-28 chr9 74107372 74107839 + 1.5 NA Intergenic Intergenic -263926 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 315-4 chr10 50895103 50895388 + 1.5 NA Intergenic Intergenic -9570 NM_138932 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 289.5-5 chr1 113134899 113135241 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 61872 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 212-3 chr11 43660789 43660955 + 1.5 NA Intergenic AluSx|SINE|Alu -19866 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 255-29 chr7 4178115 4178438 + 1.5 NA intron (NM_001079653, intron 8 of 19) intron (NM_001079653, intron 8 of 19) -43439 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 307.5-23 chr3 62653631 62653868 + 1.5 NA intron (NM_003716, intron 4 of 29) intron (NM_003716, intron 4 of 29) 221667 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 167-4 chr14 97064847 97064972 + 1.5 NA Intergenic L2a|LINE|L2 -89948 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 332.5-2 chr1 190280591 190281057 + 1.5 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 195186 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 300 chr1 9318316 9318556 + 1.5 NA intron (NM_025106, intron 1 of 2) intron (NM_025106, intron 1 of 2) 25542 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 151-9 chr3 103504516 103504682 + 1.5 NA Intergenic L1ME1|LINE|L1 19517 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 316-8 chr12 18990641 18991079 + 1.5 NA Intergenic Intergenic -138873 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 393-28 chr5 25267732 25268340 + 1.5 NA intron (NR_136209, intron 1 of 3) L1PA13|LINE|L1 77083 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 131 chr10 13729988 13730148 + 1.5 NA intron (NM_001318336, intron 11 of 23) intron (NM_001318336, intron 11 of 23) -22501 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 452-14 chr2 50330953 50331500 + 1.5 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 16528 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 422.5-16 chr4 187958328 187958669 + 1.5 NA Intergenic L1MEd|LINE|L1 -37273 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 203-30 chr8 127408006 127408169 + 1.5 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 7688 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 312.5-27 chr6 49878172 49878417 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger -1198 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 374-17 chr2 54600735 54601031 + 1.5 NA intron (NM_178313, intron 2 of 30) intron (NM_178313, intron 2 of 30) 42489 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 277-20 chr17 70824791 70825150 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie 377209 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 241.5-33 chr7 52991567 52991827 + 1.5 NA Intergenic Intergenic -43936 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 441.5-3 chr1 194225979 194226653 + 1.5 NA Intergenic Intergenic 921571 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 231.5 chr1 178974620 178974799 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -51095 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 306-10 chr17 77168674 77169008 + 1.5 NA intron (NM_001143999, intron 3 of 16) HERVIP10B3-int|LTR|ERV1 -16372 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 154-3 chr2 143772797 143772975 + 1.5 NA Intergenic Intergenic -164181 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 194.5-31 chr7 32898745 32898924 + 1.5 NA Intergenic AluSg4|SINE|Alu -7074 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 430-30 chr5 180077517 180077829 + 1.5 NA Intergenic MER113A|DNA|hAT-Charlie -5914 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 293.5-15 chr18 52316682 52316947 + 1.5 NA Intergenic Intergenic -23383 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 263.5-18 chr3 121036399 121036765 + 1.5 NA intron (NR_145517, intron 3 of 8) L1PB4|LINE|L1 -13058 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 268-18 chr5 110581272 110581460 + 1.5 NA intron (NM_001039763, intron 10 of 13) L1PA16|LINE|L1 -67451 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 383.5-22 chr7 101968795 101969183 + 1.5 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 151363 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 519.5-12 chr3 78170944 78171534 + 1.5 NA Intergenic Intergenic -122276 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 214-4 chr12 55792859 55793001 + 1.5 NA intron (NM_033082, intron 7 of 10) AluJb|SINE|Alu 24794 NM_033082 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 436.5-7 chr2 73766715 73767257 + 1.5 NA intron (NM_003584, intron 6 of 8) intron (NM_003584, intron 6 of 8) 13171 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 167.5-15 chr22 35245048 35245262 + 1.5 NA Intergenic AluSx|SINE|Alu -12338 NR_027780 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 411-42 chr8 106522404 106522771 + 1.5 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) 74663 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 249.5-8 chr12 94376244 94376462 + 1.5 NA intron (NM_001042399, intron 6 of 15) Tigger15a|DNA|TcMar-Tigger 83514 NM_001346462 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 341.5-34 chr8 74723174 74723540 + 1.5 NA intron (NR_033830, intron 4 of 5) L3|LINE|CR1 17664 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 306.5-39 chr8 136552890 136553250 + 1.5 NA intron (NR_147196, intron 2 of 5) (TTTC)n|Simple_repeat|Simple_repeat 22272 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 196-3 chr11 95565275 95565431 + 1.5 NA Intergenic L2b|LINE|L2 224429 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 296.5-34 chr7 14272290 14272670 + 1.5 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -281055 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 527-21 chr4 84704274 84704721 + 1.5 NA intron (NM_014991, intron 54 of 67) intron (NM_014991, intron 54 of 67) 121370 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 310-25 chr2 151989167 151989510 + 1.5 NA intron (NM_000726, intron 2 of 13) L2b|LINE|L2 -15360 NM_001330117 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 219.5-22 chr22 44943994 44944223 + 1.5 NA intron (NM_001284296, intron 2 of 13) MIRc|SINE|MIR 59511 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 314-29 chr4 96023908 96024221 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 183971 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 234.5-29 chr7 43326691 43327019 + 1.5 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 175960 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 197.5-10 chr12 79354833 79355075 + 1.5 NA intron (NM_001291901, intron 8 of 9) intron (NM_001291901, intron 8 of 9) -64303 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 232-4 chr1 227830321 227830563 + 1.5 NA intron (NM_183062, intron 3 of 4) L1M4a1|LINE|L1 14725 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 261.5-28 chr5 158766661 158766967 + 1.5 NA intron (NM_001324107, intron 10 of 15) L1ME4c|LINE|L1 331142 NM_001364156 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 192-23 chr6 61949075 61949226 + 1.5 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 337075 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 385-33 chr5 149068414 149068825 + 1.5 NA intron (NR_122044, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 5302 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 296.5-10 chr16 67073401 67073668 + 1.5 NA intron (NM_001755, intron 4 of 5) AluSz|SINE|Alu -36407 NM_001320541 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 336.5-10 chr17 50041852 50042230 + 1.5 NA Intergenic L1M4|LINE|L1 13698 NR_038230 284080 Hs.274864 NR_038230 ENSG00000246640 PICART1 - p53 inducible cancer associated RNA transcript 1 ncRNA 341-22 chr21 36154029 36154296 + 1.5 NA intron (NR_038892, intron 1 of 3) intron (NR_038892, intron 1 of 3) 2146 NR_038894 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 464.5-25 chr9 104636068 104636522 + 1.5 NA Intergenic L1MA4|LINE|L1 -18091 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 379-14 chr14 47204079 47204413 + 1.5 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 139000 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 249 chr1 218458503 218458745 + 1.5 NA intron (NR_031644, intron 2 of 6) L1MB8|LINE|L1 15998 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 239.5-10 chr18 9414276 9414525 + 1.5 NA Intergenic Intergenic -61113 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 254-25 chr3 50618393 50618680 + 1.5 NA intron (NM_004635, intron 2 of 10) intron (NM_004635, intron 2 of 10) 1385 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 167-13 chr6 157854690 157854822 + 1.5 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 31510 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 357.5-12 chr2 65200471 65200943 + 1.5 NA Intergenic L1M1|LINE|L1 -26988 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 248.5-8 chr14 50229156 50229387 + 1.5 NA intron (NM_006939, intron 1 of 22) intron (NM_006939, intron 1 of 22) 2307 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 303-28 chr7 27980920 27981259 + 1.5 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -199368 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 200.5-19 chr2 16632709 16632976 + 1.5 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 32992 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 162.5-9 chr18 7359673 7359838 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 101251 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 438.5-14 chr8 123577068 123577584 + 1.5 NA Intergenic Intergenic -36120 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 222.5-15 chr2 192408161 192408340 + 1.5 NA Intergenic Intergenic -213317 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 296-19 chr2 76389220 76389466 + 1.5 NA Intergenic Intergenic -596622 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 169-5 chr14 50933964 50934206 + 1.5 NA intron (NM_002863, intron 3 of 19) L1ME3G|LINE|L1 10398 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 246-16 chr8 121978895 121979180 + 1.5 NA Intergenic Intergenic -337597 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 180-6 chr22 29386216 29386443 + 1.5 NA intron (NM_001166019, intron 1 of 20) MIRc|SINE|MIR 2241 NM_001166019 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 491.5-20 chr9 80205979 80206509 + 1.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 231221 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 138.5-9 chr2 194479091 194479225 + 1.5 NA Intergenic Intergenic 134889 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 220-2 chr1 109348120 109348422 + 1.5 NA intron (NM_001205228, intron 6 of 19) intron (NM_001205228, intron 6 of 19) -41260 NM_001010985 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 408.5-14 chr2 223410904 223411425 + 1.5 NA Intergenic LTR78|LTR|ERV1 191197 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 366-8 chr17 42788366 42788770 + 1.5 NA intron (NM_032387, intron 10 of 18) intron (NM_032387, intron 10 of 18) 7958 NM_001321299 65266 Hs.105448 NM_032387 ENSG00000126562 WNK4 PHA2B|PRKWNK4 WNK lysine deficient protein kinase 4 protein-coding 501.5-22 chr4 121360163 121360758 + 1.5 NA intron (NM_198179, intron 1 of 5) intron (NM_198179, intron 1 of 5) 20558 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 401-20 chr2 107470363 107470692 + 1.5 NA Intergenic L2a|LINE|L2 -58892 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 280.5-35 chr7 25023503 25023923 + 1.5 NA Intergenic L1PB3|LINE|L1 -43535 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 430-22 chr4 47866034 47866482 + 1.5 NA intron (NR_103795, intron 19 of 23) intron (NR_103795, intron 19 of 23) -28152 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 484-25 chr20 58837476 58837903 + 1.5 NA intron (NR_002785, intron 4 of 4) AluSz6|SINE|Alu -2059 NM_016592 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 333-41 chr8 135558015 135558395 + 1.5 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 100749 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 302.5-29 chr3 40669998 40670334 + 1.5 NA Intergenic Intergenic 145206 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 308.5-3 chr10 98759398 98759816 + 1.5 NA intron (NM_021828, intron 3 of 11) L1M3|LINE|L1 164961 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 296-34 chr8 106571582 106571827 + 1.5 NA intron (NM_018002, intron 3 of 15) MLT1A-int|LTR|ERVL-MaLR -86104 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 426-11 chr14 70568739 70569082 + 1.5 NA Intergenic L1PA17|LINE|L1 31780 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 238.5-39 chr8 21491807 21492127 + 1.5 NA Intergenic Intergenic 193728 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 338.5-11 chr15 35230768 35231064 + 1.5 NA Intergenic L1M1|LINE|L1 -6410 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 244.5-36 chr6 35466931 35467287 + 1.5 NA TTS (NM_021922) TTS (NM_021922) -1292 NM_007104 4736 Hs.148340 NM_007104 ENSG00000198755 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 221-22 chr5 74111027 74111223 + 1.5 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 197200 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 158.5-7 chr14 65657000 65657125 + 1.5 NA intron (NM_004480, intron 5 of 9) L1MA3|LINE|L1 185960 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 216.5-38 chr8 134565577 134565778 + 1.5 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -32394 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 368.5-18 chr19 28585750 28586098 + 1.5 NA intron (NR_110759, intron 5 of 9) (CCTCTG)n|Simple_repeat|Simple_repeat -20764 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 367-2 chr1 50068751 50069072 + 1.5 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) 20856 NM_001144777 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 268.5-16 chr21 19724834 19725154 + 1.5 NA Intergenic Intergenic 174761 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 232-18 chr2 88270864 88271051 + 1.5 NA Intergenic Intergenic 97818 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 485-13 chr6 75691959 75692613 + 1.5 NA intron (NM_001100409, intron 15 of 22) intron (NM_001100409, intron 15 of 22) -56953 NM_001368136 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 444.5-10 chr3 15922805 15923145 + 1.5 NA Intergenic AluSp|SINE|Alu 49204 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 475.5-4 chr12 116891009 116891443 + 1.5 NA Intergenic MADE1|DNA|TcMar-Mariner -9785 NM_003806 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 392-16 chr17 28312509 28312918 + 1.5 NA Intergenic L1MC1|LINE|L1 -5331 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 225.5-12 chr14 41923520 41923726 + 1.5 NA Intergenic Intergenic 316767 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 499-13 chr4 38698624 38699129 + 1.5 NA 3' UTR (NM_016531, exon 6 of 6) 3' UTR (NM_016531, exon 6 of 6) -34248 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 412-28 chr7 77974466 77974917 + 1.5 NA Intergenic L1ME1|LINE|L1 134561 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 318.5-27 chr5 149775797 149776162 + 1.5 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 4039 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 235-39 chr9 82894539 82894885 + 1.5 NA Intergenic Intergenic 168430 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 189-10 chr17 47803269 47803448 + 1.5 NA Intergenic Intergenic 18436 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 203-9 chr19 49497529 49497718 + 1.5 NA promoter-TSS (NR_001285) promoter-TSS (NR_001285) -96 NR_001285 84546 NR_001285 ENSG00000200530 SNORD35B RNU35B|U35B small nucleolar RNA, C/D box 35B snoRNA 238.5 chr1 175747718 175747971 + 1.5 NA Intergenic Intergenic -4249 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 214.5-32 chr7 101344348 101344558 + 1.5 NA Intergenic AluSz6|SINE|Alu -18367 NM_133457 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 611.5-2 chr10 14090052 14090773 + 1.5 NA intron (NR_134578, intron 3 of 3) intron (NR_134578, intron 3 of 3) 16128 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 168-8 chr2 31046531 31046660 + 1.5 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 83045 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 222-12 chr19 31314882 31315090 + 1.5 NA intron (NR_138034, intron 1 of 1) intron (NR_138034, intron 1 of 1) 34450 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 294-19 chr18 3553096 3553439 + 1.5 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -40847 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 308-33 chr6 152687822 152688177 + 1.5 NA Intergenic AluSc|SINE|Alu -9896 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 225-17 chr17 68543028 68543353 + 1.5 NA intron (NM_017565, intron 5 of 10) MER5A1|DNA|hAT-Charlie 15237 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 184.5-20 chr5 99972061 99972273 + 1.5 NA Intergenic Intergenic 416087 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 356-34 chr6 99572504 99572769 + 1.5 NA Intergenic Arthur1C|DNA|hAT-Tip100 -3822 NM_001013399 892 Hs.430646 NM_005190 ENSG00000112237 CCNC CycC|SRB11|hSRB11 cyclin C protein-coding 327.5-2 chr11 71509326 71509600 + 1.5 NA Intergenic L1MA7|LINE|L1 -17804 NM_001012503 440050 Hs.710675 NM_001012503 ENSG00000244411 KRTAP5-7 KRTAP5-3|KRTAP5.7 keratin associated protein 5-7 protein-coding 114 chr12 5406595 5406747 + 1.5 NA Intergenic Charlie23a|DNA|hAT-Charlie -25437 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 247-27 chr8 92003193 92003422 + 1.5 NA intron (NM_004349, intron 5 of 10) intron (NM_004349, intron 5 of 10) 14373 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 372-34 chr5 116663497 116663849 + 1.5 NA Intergenic Intergenic -88850 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 466-33 chr9 95428142 95428534 + 1.5 NA Intergenic AluSz|SINE|Alu -35271 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 516.5-8 chr2 226448849 226449393 + 1.5 NA Intergenic Intergenic 209672 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 391.5-28 chr4 41667837 41668291 + 1.5 NA intron (NM_001330786, intron 13 of 22) intron (NM_001330786, intron 13 of 22) 55162 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 393 chr1 155676442 155676708 + 1.5 NA exon (NM_001198899, exon 2 of 8) exon (NM_001198899, exon 2 of 8) 2680 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 232-13 chr14 51994497 51994698 + 1.5 NA intron (NM_016039, intron 3 of 7) intron (NM_016039, intron 3 of 7) 5051 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 211.5-31 chr6 61896583 61896740 + 1.5 NA intron (NR_146874, intron 5 of 13) intron (NR_146874, intron 5 of 13) 322531 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 450 chr1 100587936 100588444 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 50051 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 255-18 chr22 29908433 29908734 + 1.5 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) 25409 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 259-29 chr8 122451890 122452204 + 1.5 NA intron (NR_131202, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 116597 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 211.5-34 chr7 108756749 108756966 + 1.5 NA Intergenic L1PA13|LINE|L1 127730 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 275-31 chr5 104096642 104096940 + 1.5 NA Intergenic Intergenic -534002 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 361.5-32 chr9 95599723 95600128 + 1.5 NA Intergenic Intergenic -82868 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 330.5-7 chr1 235142098 235142456 + 1.5 NA intron (NR_144492, intron 4 of 8) intron (NR_144492, intron 4 of 8) -13440 NM_014765 9804 Hs.533192 NM_014765 ENSG00000173726 TOMM20 MAS20|MOM19|TOM20 translocase of outer mitochondrial membrane 20 protein-coding 284-9 chr13 103012878 103013144 + 1.5 NA Intergenic Intergenic 53406 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 249.5 chr1 72476963 72477317 + 1.5 NA Intergenic Intergenic -194601 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 148.5-7 chr11 78944163 78944322 + 1.5 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -369378 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 197.5-40 chr8 130958235 130958499 + 1.5 NA intron (NM_001115, intron 2 of 17) L2a|LINE|L2 82542 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 530.5-2 chr10 14015854 14016372 + 1.5 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -7563 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 297-22 chr3 37183264 37183709 + 1.5 NA Intergenic Intergenic -7126 NM_001348311 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 259-31 chr9 36938929 36939170 + 1.5 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -45518 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 525-26 chr8 132929583 132930045 + 1.5 NA intron (NM_003235, intron 23 of 47) L1PB3|LINE|L1 62856 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 234.5-13 chr2 29701636 29701861 + 1.5 NA intron (NM_004304, intron 2 of 28) MIRb|SINE|MIR 219838 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 254.5-15 chr15 76197462 76197724 + 1.5 NA intron (NM_152335, intron 9 of 10) MIR|SINE|MIR -16107 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 300.5-25 chr2 161778948 161779260 + 1.5 NA intron (NM_001354453, intron 2 of 24) MSTB2|LTR|ERVL-MaLR 154688 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 452.5-5 chr16 79450654 79451243 + 1.5 NA Intergenic Intergenic 149789 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 413.5-9 chr17 35590143 35590522 + 1.5 NA intron (NM_001030006, intron 1 of 21) intron (NM_001030006, intron 1 of 21) 3010 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 207.5-17 chr2 46344382 46344554 + 1.5 NA intron (NM_001430, intron 1 of 15) LFSINE_Vert|SINE|tRNA 47061 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 231.5-15 chr2 140758583 140758927 + 1.5 NA intron (NM_018557, intron 35 of 90) intron (NM_018557, intron 35 of 90) -172070 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 225.5-23 chr2 203373970 203374210 + 1.5 NA intron (NM_005759, intron 2 of 9) AluJb|SINE|Alu 7206 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 323.5-4 chr10 15721374 15721634 + 1.5 NA Intergenic Intergenic -1169 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 297.5-5 chr10 86017470 86017767 + 1.5 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 247170 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 270-33 chr8 115783646 115783928 + 1.5 NA Intergenic L1ME1|LINE|L1 -114812 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 188 chr10 61487823 61488060 + 1.5 NA intron (NR_120643, intron 5 of 5) intron (NR_120643, intron 5 of 5) 7900 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 294.5-26 chr4 99519734 99519986 + 1.5 NA intron (NM_032149, intron 2 of 8) intron (NM_032149, intron 2 of 8) 8839 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 296.5-12 chr17 61120881 61121180 + 1.5 NA intron (NM_001330413, intron 23 of 25) L1MC5|LINE|L1 246674 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 211-20 chr5 22702590 22702831 + 1.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 150634 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 286.5-31 chr6 157422730 157422948 + 1.5 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) 41649 NM_153746 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 367.5-31 chr6 55243968 55244383 + 1.5 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -83294 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 446.5-6 chr17 69363419 69363882 + 1.5 NA Intergenic Intergenic -36517 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 206.5-3 chr10 49436458 49436632 + 1.5 NA Intergenic L1ME3F|LINE|L1 -40456 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 299.5 chr1 77923848 77924059 + 1.5 NA intron (NM_001172309, intron 4 of 11) AluSc|SINE|Alu -34414 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 362.5-4 chr10 113783725 113784081 + 1.5 NA TTS (NM_001193435) TTS (NM_001193435) -5849 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 131-5 chr20 38186245 38186392 + 1.5 NA Intergenic L1MB8|LINE|L1 -19810 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 272.5-36 chr8 9687253 9687547 + 1.5 NA intron (NM_003747, intron 5 of 26) intron (NM_003747, intron 5 of 26) -54272 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 194.5-22 chr5 32256014 32256199 + 1.5 NA intron (NM_001294344, intron 7 of 13) intron (NM_001294344, intron 7 of 13) 56833 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 192.5-31 chr8 113734760 113734938 + 1.5 NA Intergenic Intergenic -297910 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 254.5-35 chr22 35082863 35083238 + 1.5 NA intron (NM_001303508, intron 3 of 4) MER58B|DNA|hAT-Charlie 16892 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 425-8 chr10 28178780 28179141 + 1.5 NA intron (NR_134518, intron 2 of 16) HAL1|LINE|L1 103163 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 193.5-16 chr17 77165973 77166128 + 1.5 NA intron (NM_001143999, intron 3 of 16) intron (NM_001143999, intron 3 of 16) -19163 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 272-32 chr5 53041355 53041579 + 1.5 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 52115 NR_073105 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 442-7 chr14 34162271 34162756 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -211439 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 213-9 chr2 55523943 55524168 + 1.5 NA intron (NM_001282761, intron 4 of 10) intron (NM_001282761, intron 4 of 10) 4460 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 332.5-6 chr11 82319396 82319740 + 1.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 84345 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 424.5-19 chr7 90444427 90444798 + 1.5 NA Intergenic L1ME3C|LINE|L1 -25027 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 383.5-6 chr12 27188554 27188873 + 1.5 NA Intergenic L2a|LINE|L2 -55573 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 383.5-4 chr11 78340096 78340565 + 1.5 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 1550 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 332.5-18 chr7 4558579 4558933 + 1.5 NA Intergenic Intergenic -123539 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 194.5-6 chr12 11650670 11650938 + 1.5 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 950 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 335-27 chr2 109481248 109481709 + 1.5 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) 132189 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 277.5-37 chrX 109720814 109721138 + 1.5 NA intron (NM_004458, intron 1 of 15) intron (NM_004458, intron 1 of 15) -11535 NR_158569 105373311 Hs.268785 NR_158569 LOC105373311 - uncharacterized LOC105373311 ncRNA 471-30 chr8 125209995 125210450 + 1.5 NA intron (NM_001349486, intron 5 of 7) MIR|SINE|MIR 118362 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 305.5-6 chr11 66833627 66834035 + 1.5 NA intron (NM_001302084, intron 12 of 14) AluSz6|SINE|Alu -9610 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 285.5-5 chr13 65994633 65994913 + 1.5 NA Intergenic L1PA4|LINE|L1 -28344 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 417.5-21 chr6 118485855 118486421 + 1.5 NA intron (NM_001042475, intron 6 of 12) intron (NM_001042475, intron 6 of 12) -15235 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 504.5-5 chr22 48657112 48657577 + 1.5 NA intron (NM_001082967, intron 2 of 3) L1M4|LINE|L1 81004 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 295.5-27 chr5 68581689 68581954 + 1.5 NA Intergenic Intergenic 289244 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 286.5-29 chr6 71765711 71766163 + 1.5 NA Intergenic Intergenic -120766 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 253-34 chr7 52460996 52461245 + 1.5 NA Intergenic MER103C|DNA|hAT-Charlie -574513 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 126-2 chr17 66567982 66568087 + 1.5 NA intron (NM_002737, intron 3 of 16) AluSz|SINE|Alu -151180 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 232-28 chr6 47815631 47815807 + 1.5 NA intron (NR_033806, intron 6 of 6) intron (NR_033806, intron 6 of 6) 28651 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 259-26 chr7 83416445 83416655 + 1.5 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 224881 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 276.5-26 chr20 49663017 49663284 + 1.5 NA intron (NM_004776, intron 1 of 8) L1ME3A|LINE|L1 50728 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 232-29 chr8 119196230 119196446 + 1.5 NA Intergenic L2a|LINE|L2 -12025 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 243-12 chr15 72914989 72915269 + 1.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger -131371 NM_031284 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 243.5-15 chr19 29692205 29692401 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 22753 NM_001031726 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 590-8 chr2 73873905 73874632 + 1.5 NA TTS (NR_148668) TTS (NR_148668) -18740 NM_001615 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 399.5-4 chr11 78306587 78307088 + 1.5 NA intron (NM_080491, intron 1 of 9) MIRb|SINE|MIR 35043 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 210.5-23 chr5 98863912 98864147 + 1.5 NA intron (NM_001364113, intron 32 of 36) intron (NM_001364113, intron 32 of 36) 62505 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 174-27 chr6 40292796 40293020 + 1.5 NA Intergenic L2a|LINE|L2 63098 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 115-5 chr3 57766575 57766696 + 1.5 NA intron (NM_001304420, intron 1 of 21) intron (NM_001304420, intron 1 of 21) 9379 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 285.5-3 chr10 117013464 117013684 + 1.5 NA intron (NM_001258300, intron 2 of 17) L1MC3|LINE|L1 -7997 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 195-17 chr4 113172624 113172793 + 1.5 NA intron (NM_001354241, intron 2 of 45) intron (NM_001354241, intron 2 of 45) 20426 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 600-11 chr15 92423165 92423662 + 1.5 NA intron (NM_001330416, intron 1 of 4) AluSg4|SINE|Alu 29526 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 493-27 chr8 62199448 62199901 + 1.5 NA Intergenic Intergenic -49180 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 175-7 chr18 7365778 7365916 + 1.5 NA Intergenic Intergenic 95159 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 235-13 chr15 78940064 78940307 + 1.5 NA intron (NM_001319137, intron 1 of 12) intron (NM_001319137, intron 1 of 12) 4913 NM_001319137 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 145-5 chr4 135677565 135677729 + 1.5 NA Intergenic L1M4|LINE|L1 210446 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 273.5-24 chr5 166540638 166540953 + 1.5 NA Intergenic Intergenic 385575 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 264.5-8 chr10 81066725 81067054 + 1.5 NA Intergenic L1ME4a|LINE|L1 417092 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 461.5-8 chr16 6926187 6926575 + 1.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 152572 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 269-24 chr2 184238378 184238655 + 1.5 NA Intergenic Intergenic -140459 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 189.5-11 chr16 88132097 88132367 + 1.5 NA Intergenic CpG -31247 NR_120310 400553 Hs.592071 NR_120310 ENSG00000205037 LOC400553 - uncharacterized LOC400553 ncRNA 355-12 chr17 35465451 35465832 + 1.5 NA Intergenic HERVL74-int|LTR|ERVL -16875 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10|hSLFN13 schlafen family member 13 protein-coding 216.5-19 chr17 70578750 70579028 + 1.5 NA Intergenic Intergenic 409354 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 401.5-9 chr11 29917114 29917458 + 1.5 NA Intergenic AluJr|SINE|Alu 65107 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 164-16 chrX 99664488 99664646 + 1.5 NA Intergenic Intergenic 745706 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 332.5-9 chr22 19787079 19787375 + 1.5 NA 3' UTR (NM_053004, exon 8 of 8) 3' UTR (NM_053004, exon 8 of 8) 30524 NM_080646 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 175 chr10 45553229 45553394 + 1.5 NA intron (NM_145021, intron 1 of 6) Tigger13a|DNA|TcMar-Tigger -17940 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 197.5-31 chr5 65391993 65392176 + 1.5 NA intron (NR_135689, intron 7 of 25) L1MC4|LINE|L1 89836 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 150.5-18 chr4 69027156 69027355 + 1.5 NA Intergenic L1PA13|LINE|L1 -6859 NM_001075 7365 Hs.201634 NM_001075 ENSG00000109181 UGT2B10 UDPGT2B10 UDP glucuronosyltransferase family 2 member B10 protein-coding 273-32 chr7 2967508 2967735 + 1.5 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 76246 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 309.5-4 chr10 87525044 87525397 + 1.5 NA intron (NM_001178118, intron 4 of 4) L1MB7|LINE|L1 17387 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 156-18 chr7 90435909 90436066 + 1.5 NA Intergenic AluYh3|SINE|Alu 32526 NM_001185073 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 334.5-18 chr22 20120398 20120787 + 1.5 NA intron (NM_001278641, intron 2 of 5) intron (NM_001278641, intron 2 of 5) 2847 NM_001278641 5902 Hs.24763 NM_002882 ENSG00000099901 RANBP1 HTF9A RAN binding protein 1 protein-coding 300-17 chr4 81137481 81137855 + 1.5 NA intron (NM_006259, intron 12 of 18) intron (NM_006259, intron 12 of 18) 16489 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 397.5-16 chr2 117312821 117313252 + 1.5 NA Intergenic L1MA10|LINE|L1 -501655 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 343.5-14 chr14 73153441 73153906 + 1.5 NA intron (NM_000021, intron 3 of 11) intron (NM_000021, intron 3 of 11) 17166 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 172 chr1 51032259 51032416 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie -27500 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 312-11 chr2 29362504 29362738 + 1.5 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 112756 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 274.5-5 chr11 70577017 70577344 + 1.5 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -53914 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 446.5-4 chr13 61395685 61396221 + 1.5 NA Intergenic Intergenic 19569 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 277.5-11 chr14 58878641 58878943 + 1.5 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 50504 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 335.5-26 chr3 43114469 43114919 + 1.5 NA Intergenic Intergenic -8615 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 303-27 chr6 132461401 132461676 + 1.5 NA TTS (NM_001326580) TTS (NM_001326580) 51245 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 193.5-7 chr10 71860076 71860223 + 1.5 NA Intergenic L2b|LINE|L2 -8898 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 335-41 chr3 70042534 70042967 + 1.5 NA Intergenic Intergenic 43006 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 489.5-18 chr6 40908028 40908531 + 1.5 NA intron (NR_110873, intron 1 of 5) GA-rich|Low_complexity|Low_complexity 115001 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 463.5-9 chr2 19792092 19792519 + 1.5 NA Intergenic MER8|DNA|TcMar-Tigger -76549 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 151.5-26 chr9 71295027 71295216 + 1.5 NA intron (NM_001366143, intron 1 of 25) L1ME3D|LINE|L1 151850 NM_001366143 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 339-33 chr7 71701730 71702067 + 1.5 NA intron (NM_022479, intron 9 of 10) (TA)n|Simple_repeat|Simple_repeat -394128 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 328-14 chr14 66008492 66008768 + 1.5 NA Intergenic Intergenic -477741 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 287.5-23 chr5 16837767 16838016 + 1.5 NA intron (NM_012334, intron 2 of 40) Tigger1|DNA|TcMar-Tigger 98397 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 136-6 chr2 76360831 76360992 + 1.5 NA Intergenic Intergenic -625054 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 184.5-8 chr15 64819247 64819401 + 1.5 NA intron (NM_001286499, intron 8 of 12) AluSx1|SINE|Alu 6323 NM_025049 80119 Hs.112160 NM_025049 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 194.5-30 chr6 73473275 73473405 + 1.5 NA intron (NM_133645, intron 3 of 12) intron (NM_133645, intron 3 of 12) 11603 NM_012123 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 391.5 chr1 188765154 188765582 + 1.5 NA Intergenic Intergenic 1321740 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 265.5-10 chr12 90061105 90061505 + 1.5 NA Intergenic Intergenic 113612 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 256.5-28 chr6 634830 635191 + 1.5 NA intron (NM_018303, intron 2 of 27) intron (NM_018303, intron 2 of 27) 21954 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 174-3 chr10 26740303 26740522 + 1.5 NA intron (NM_014317, intron 10 of 11) intron (NM_014317, intron 10 of 11) 42711 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 222-3 chr10 68944374 68944615 + 1.5 NA intron (NM_024045, intron 14 of 14) intron (NM_024045, intron 14 of 14) -11676 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 244.5-18 chr19 30292023 30292291 + 1.5 NA Intergenic MIRc|SINE|MIR -80227 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 410-8 chr15 26313117 26313615 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 197553 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 260.5-34 chr8 87547324 87547634 + 1.5 NA Intergenic Intergenic 326536 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 168-15 chr6 140483599 140483809 + 1.5 NA Intergenic Intergenic -200110 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 297 chr1 81711961 81712205 + 1.5 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 12313 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 310.5-2 chr1 153602359 153602704 + 1.5 NA Intergenic AluSz|SINE|Alu 6824 NM_001317007 140576 Hs.515714 NM_080388 ENSG00000188643 S100A16 AAG13|DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 562.5-15 chr2 241621695 241622202 + 1.5 NA intron (NM_015963, intron 2 of 5) L1MCa|LINE|L1 -4447 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 345-11 chr15 41251429 41251714 + 1.5 NA intron (NM_007236, intron 2 of 6) MER1B|DNA|hAT-Charlie 20303 NM_007236 11261 Hs.406234 NM_007236 ENSG00000187446 CHP1 CHP|SLC9A1BP|SPAX9|Sid470p|p22|p24 calcineurin like EF-hand protein 1 protein-coding 388.5-19 chr5 33281357 33281709 + 1.5 NA Intergenic Intergenic 51798 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 483-23 chr5 81429564 81430018 + 1.5 NA intron (NM_012446, intron 15 of 16) intron (NM_012446, intron 15 of 16) -35657 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 434-29 chr8 127351335 127351818 + 1.5 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -48823 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 190-13 chr4 142012595 142012731 + 1.5 NA Intergenic L1MA2|LINE|L1 376080 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 230.5-48 chr7 13321984 13322209 + 1.5 NA Intergenic Intergenic 634463 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 346.5-33 chr8 137276674 137277129 + 1.5 NA Intergenic MER67D|LTR|ERV1 136687 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 194.5-37 chrX 38754990 38755276 + 1.5 NA Intergenic Intergenic -46299 NM_021242 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 275.5-23 chr3 134125852 134126219 + 1.5 NA Intergenic L1MB7|LINE|L1 -68387 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 177.5-2 chr1 61465061 61465208 + 1.5 NA Intergenic Intergenic -189108 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 303.5-2 chr1 66333105 66333441 + 1.5 NA intron (NM_001037339, intron 1 of 9) intron (NM_001037339, intron 1 of 9) 1165 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 248.5-13 chr19 15585828 15586050 + 1.5 NA Intergenic Intergenic -29279 NM_007253 11283 Hs.268554 NM_007253 ENSG00000186526 CYP4F8 CPF8|CYPIVF8 cytochrome P450 family 4 subfamily F member 8 protein-coding 215.5-35 chr6 53050077 53050285 + 1.5 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 11621 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 289-7 chr10 11569089 11569303 + 1.5 NA intron (NR_125732, intron 2 of 2) intron (NR_125732, intron 2 of 2) -36916 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 362.5 chr1 55777360 55777786 + 1.5 NA Intergenic Intergenic 167390 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 332.5-8 chr2 127292880 127293160 + 1.5 NA intron (NM_001303418, intron 2 of 14) intron (NM_001303418, intron 2 of 14) 1124 NM_001303416 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 402-39 chrX 39302318 39302793 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie 24807 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 259.5-28 chr4 49110665 49110949 + 1.5 NA Intergenic (CATTC)n|Satellite|Satellite 124165 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 186.5 chr1 39917835 39917981 + 1.5 NA Intergenic Intergenic -15991 NM_001033081 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 207-7 chr12 84594021 84594171 + 1.5 NA Intergenic Intergenic 318703 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 338-36 chr8 67967763 67968318 + 1.5 NA intron (NM_024870, intron 1 of 39) L1PA5|LINE|L1 15994 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 295.5-17 chr20 3256566 3256845 + 1.5 NA intron (NM_001009984, intron 33 of 36) L2|LINE|L2 -17515 NR_135000 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 230.5-40 chr5 94705646 94705955 + 1.5 NA 3' UTR (NM_024717, exon 23 of 23) 3' UTR (NM_024717, exon 23 of 23) 87131 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 185-12 chr9 115141884 115142063 + 1.5 NA intron (NR_163556, intron 1 of 7) intron (NR_163556, intron 1 of 7) 155 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 169-15 chr5 162641243 162641415 + 1.5 NA Intergenic Intergenic 573687 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 219.5-17 chr19 42213842 42214061 + 1.5 NA intron (NR_073050, intron 2 of 3) L1MC4|LINE|L1 3726 NR_073048 162989 Hs.515432 NM_133328 ENSG00000160570 DEDD2 FLAME-3|FLAME3 death effector domain containing 2 protein-coding 203-29 chr8 122090940 122091131 + 1.5 NA Intergenic LTR16A|LTR|ERVL -449595 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 311.5-20 chr17 60514141 60514470 + 1.5 NA intron (NM_006380, intron 1 of 12) AluJb|SINE|Alu 11935 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 272-33 chr5 107711435 107711618 + 1.5 NA Intergenic AluSx|SINE|Alu -40589 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 151-11 chr4 29716852 29717047 + 1.5 NA Intergenic Intergenic 502657 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 376.5-21 chr3 110641595 110641984 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 428170 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 160.5-4 chr1 160518057 160518245 + 1.5 NA intron (NM_001184714, intron 1 of 7) L1PA10|LINE|L1 5104 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 303-8 chr13 24273165 24273450 + 1.5 NA intron (NM_001286795, intron 1 of 9) intron (NM_001286795, intron 1 of 9) 2557 NM_001286793 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 352.5-32 chr8 123333964 123334409 + 1.5 NA intron (NM_014109, intron 23 of 27) intron (NM_014109, intron 23 of 27) -13848 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 281-40 chr8 28605328 28605543 + 1.5 NA Intergenic AluSq|SINE|Alu 96029 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 156.5-23 chr6 39386128 39386242 + 1.5 NA intron (NM_001289024, intron 2 of 9) L3|LINE|CR1 45205 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 424-15 chr3 83564020 83564440 + 1.5 NA Intergenic Intergenic 1305345 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 387-11 chr15 47432506 47432920 + 1.5 NA intron (NM_001198999, intron 2 of 19) intron (NM_001198999, intron 2 of 19) 248624 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 215-28 chr5 29308214 29308412 + 1.5 NA Intergenic L1MB8|LINE|L1 87663 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 405-12 chr15 88267828 88268348 + 1.5 NA intron (NR_038229, intron 3 of 3) intron (NR_038229, intron 3 of 3) -11349 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 299.5-2 chr1 191562229 191562652 + 1.5 NA Intergenic Intergenic -333942 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 256-26 chr5 95598942 95599153 + 1.5 NA intron (NM_198150, intron 6 of 7) L2a|LINE|L2 -21040 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 176.5-11 chr2 158322892 158323009 + 1.5 NA intron (NM_138803, intron 7 of 13) intron (NM_138803, intron 7 of 13) 133803 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 224-27 chr6 152298654 152298816 + 1.5 NA intron (NM_182961, intron 93 of 145) intron (NM_182961, intron 93 of 145) -81795 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 291-28 chr7 157077103 157077360 + 1.5 NA Intergenic Intergenic -61695 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 132.5-13 chr20 7030114 7030236 + 1.5 NA Intergenic Intergenic 224027 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 313.5-33 chr5 142223141 142223533 + 1.5 NA Intergenic L2c|LINE|L2 94985 NR_131221 100642175 Hs.684549 NR_131221 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 493-18 chr22 32959680 32960069 + 1.5 NA intron (NM_003490, intron 3 of 13) AluJb|SINE|Alu 46947 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 130.5-8 chr17 18169121 18169208 + 1.5 NA intron (NM_016239, intron 61 of 64) (AAT)n|Simple_repeat|Simple_repeat -14664 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 306-9 chr16 75696603 75697105 + 1.5 NA exon (NM_001351307, exon 3 of 5) exon (NM_001351307, exon 3 of 5) 4607 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 277.5-8 chr12 119275060 119275275 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 28213 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 210-16 chr2 120484192 120484389 + 1.5 NA Intergenic Intergenic -17941 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 495-10 chr2 146981799 146982258 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie 394971 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 204-19 chr6 42535108 42535282 + 1.5 NA Intergenic L1ME4a|LINE|L1 -28827 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 310.5-22 chr2 44005992 44006356 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -10185 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 238-15 chr16 61898214 61898477 + 1.5 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 138093 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 302.5-20 chr2 61329259 61329662 + 1.5 NA intron (NM_014709, intron 20 of 79) intron (NM_014709, intron 20 of 79) 87917 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 146.5-31 chr7 19779817 19780001 + 1.5 NA Intergenic Intergenic -6292 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 197-18 chr3 109090222 109090425 + 1.5 NA intron (NM_014429, intron 8 of 27) intron (NM_014429, intron 8 of 27) -11133 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 197.5-13 chr14 57281810 57282013 + 1.5 NA intron (NR_026895, intron 2 of 6) intron (NR_026895, intron 2 of 6) 12940 NM_018229 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 366.5-15 chr17 60243684 60244128 + 1.5 NA intron (NM_032582, intron 11 of 33) L1M4a2|LINE|L1 -12261 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 282.5-10 chr12 2726115 2726427 + 1.5 NA Intergenic Intergenic -35114 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 204.5-22 chr21 27376096 27376296 + 1.5 NA Intergenic Intergenic -346183 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 227.5-27 chr7 38812698 38812849 + 1.5 NA intron (NM_014396, intron 7 of 28) L1MB7|LINE|L1 96418 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 325.5-17 chr20 1940571 1940844 + 1.5 NA TTS (NM_001040022) TTS (NM_001040022) -6503 NR_134520 727993 Hs.551466 NR_134520 ENSG00000233896 PDYN-AS1 - PDYN antisense RNA 1 ncRNA 285.5-7 chr17 33451967 33452185 + 1.5 NA intron (NM_001094, intron 1 of 9) Tigger15a|DNA|TcMar-Tigger 81684 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 212-7 chr14 73818698 73818955 + 1.5 NA Intergenic Intergenic 11309 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 271.5-28 chr4 55892494 55892737 + 1.5 NA intron (NM_001024924, intron 13 of 18) intron (NM_001024924, intron 13 of 18) 38965 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 205-9 chr12 7656480 7656631 + 1.5 NA intron (NM_001304566, intron 2 of 5) intron (NM_001304566, intron 2 of 5) 9353 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 130-6 chr3 123632340 123632463 + 1.5 NA intron (NM_001321309, intron 28 of 32) intron (NM_001321309, intron 28 of 32) -11853 NM_053031 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 233.5-16 chr2 118280198 118280515 + 1.5 NA Intergenic Intergenic -93970 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 435-16 chr20 41216709 41217077 + 1.5 NA intron (NM_015035, intron 2 of 3) L1ME4b|LINE|L1 47870 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 310.5-42 chr8 28617930 28618305 + 1.5 NA Intergenic L1MB4|LINE|L1 83347 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 418.5-24 chr6 69584407 69584818 + 1.5 NA Intergenic Intergenic 211854 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 341.5-32 chr7 52483695 52484065 + 1.5 NA Intergenic Intergenic -551753 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 340.5-17 chr22 31872447 31872820 + 1.5 NA intron (NR_157126, intron 34 of 39) intron (NR_157126, intron 34 of 39) 65821 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 350-22 chr3 88380191 88380477 + 1.5 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 41878 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 401-25 chr3 44287049 44287572 + 1.5 NA intron (NM_001145030, intron 9 of 19) (ATTTAT)n|Simple_repeat|Simple_repeat 45424 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 140.5-17 chr21 16677096 16677258 + 1.5 NA Intergenic MIR|SINE|MIR 86940 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 257-22 chr2 121454587 121454774 + 1.5 NA intron (NM_015282, intron 14 of 38) MLT1A|LTR|ERVL-MaLR -76200 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 216-2 chr10 106722160 106722397 + 1.5 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 442428 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 197.5 chr1 32205161 32205365 + 1.5 NA promoter-TSS (NM_001160042) promoter-TSS (NM_001160042) -408 NM_001160042 55721 Hs.274356 NM_018134 ENSG00000160051 IQCC - IQ motif containing C protein-coding 167.5-21 chr5 167454050 167454215 + 1.5 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -119527 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 148.5-4 chr1 180095833 180096029 + 1.5 NA intron (NM_014810, intron 35 of 37) intron (NM_014810, intron 35 of 37) -58902 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 163-9 chr7 139733645 139733864 + 1.5 NA intron (NM_001113239, intron 1 of 14) intron (NM_001113239, intron 1 of 14) 44244 NM_022740 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 287-48 chrX 96279554 96280003 + 1.5 NA Intergenic L1PB1|LINE|L1 58124 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 128-3 chr17 43782071 43782250 + 1.5 NA intron (NM_001353400, intron 3 of 4) intron (NM_001353400, intron 3 of 4) 1725 NM_001136483 284067 Hs.252707 NM_001136483 ENSG00000231256 CFAP97D1 C17orf105 CFAP97 domain containing 1 protein-coding 347.5-24 chr6 62362120 62362506 + 1.5 NA Intergenic Intergenic -76086 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 330-9 chr10 69105038 69105435 + 1.5 NA TTS (NM_001321053) TTS (NM_001321053) 17133 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 479.5-11 chr5 17328449 17329139 + 1.5 NA Intergenic Intergenic 58516 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 582.5-7 chr20 32997284 32997741 + 1.5 NA intron (NM_080675, intron 6 of 12) intron (NM_080675, intron 6 of 12) 6921 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 265.5-13 chr14 47806149 47806485 + 1.5 NA Intergenic Intergenic -11303 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 325.5-15 chr2 177872946 177873215 + 1.5 NA intron (NM_001077197, intron 6 of 20) intron (NM_001077197, intron 6 of 20) 15676 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 169-14 chr5 123264138 123264250 + 1.5 NA Intergenic Intergenic 159398 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 366.5-12 chr14 85646207 85646659 + 1.5 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 113084 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 273-5 chr11 117657497 117657709 + 1.5 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 139613 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 205-11 chr14 22376214 22376480 + 1.5 NA Intergenic Intergenic 56406 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 424-2 chr1 163015491 163016045 + 1.5 NA Intergenic L1MA8|LINE|L1 -52838 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 215-3 chr1 88540018 88540241 + 1.5 NA non-coding (NR_110682, exon 4 of 4) non-coding (NR_110682, exon 4 of 4) -144015 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 272-28 chr4 135874981 135875240 + 1.5 NA intron (NR_103763, intron 1 of 2) AluJb|SINE|Alu 12983 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 304.5-30 chr3 99610617 99610879 + 1.5 NA Intergenic L1PREC2|LINE|L1 -27846 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 206-25 chr7 108892506 108892799 + 1.5 NA Intergenic Intergenic -8065 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 145.5-7 chr12 5213264 5213465 + 1.5 NA Intergenic Intergenic 29787 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 242-35 chr8 136630129 136630290 + 1.5 NA intron (NR_147196, intron 2 of 5) MLT1C|LTR|ERVL-MaLR 99411 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 299.5-31 chr7 52036949 52037445 + 1.5 NA Intergenic Intergenic -643941 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 160-4 chr1 114222652 114222758 + 1.5 NA Intergenic L2a|LINE|L2 -68836 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 474-12 chr18 3766338 3766841 + 1.5 NA intron (NM_001242762, intron 2 of 9) L1MD1|LINE|L1 78769 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 378.5-33 chr8 122474119 122474424 + 1.5 NA intron (NR_131202, intron 2 of 3) MER57E1|LTR|ERV1 94373 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 293.5-14 chr17 68660349 68660572 + 1.5 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 32306 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 295.5-32 chr8 130825135 130825582 + 1.5 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 215551 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 327.5-16 chr4 16153044 16153429 + 1.5 NA Intergenic Intergenic -69213 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 464.5-6 chr10 35137188 35137612 + 1.5 NA promoter-TSS (NM_183011) promoter-TSS (NM_183011) -382 NM_183012 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 323-24 chr5 158091414 158091730 + 1.5 NA Intergenic MER113|DNA|hAT-Charlie -232427 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 271-14 chr2 41593465 41593774 + 1.5 NA Intergenic Intergenic -283936 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 179.5-17 chr6 125178100 125178238 + 1.5 NA intron (NM_001292026, intron 1 of 4) MamRep1151|LTR?|LTR? 19648 NR_149043 100126584 Hs.640031 NR_149043 LOC100126584 - uncharacterized LOC100126584 ncRNA 413-40 chr8 103671075 103671431 + 1.5 NA intron (NM_001348488, intron 3 of 25) THE1B|LTR|ERVL-MaLR -147967 NM_001348504 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 423.5-12 chr14 60543335 60543739 + 1.5 NA Intergenic L2|LINE|L2 34391 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 402-36 chr7 107612227 107612666 + 1.5 NA intron (NR_163929, intron 6 of 7) intron (NR_163929, intron 6 of 7) 32200 NR_163928 230.5-6 chr10 17686626 17686953 + 1.5 NA intron (NM_001324284, intron 5 of 14) intron (NM_001324284, intron 5 of 14) 42638 NM_001324286 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 499.5-5 chr12 88690753 88691360 + 1.5 NA Intergenic Intergenic -110583 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 130.5-5 chr11 37010298 37010407 + 1.5 NA Intergenic Intergenic -412073 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 340-15 chr15 78650432 78650707 + 1.5 NA Intergenic Intergenic -9359 NM_001256567 1143 Hs.624178 NM_000750 ENSG00000117971 CHRNB4 - cholinergic receptor nicotinic beta 4 subunit protein-coding 426.5-21 chr6 9697159 9697672 + 1.5 NA Intergenic Intergenic -707087 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 382.5-16 chr4 157777243 157777569 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 204916 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 181.5-33 chr9 83039575 83039777 + 1.5 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 23466 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 321.5-28 chr6 40079193 40079598 + 1.5 NA Intergenic L1MCc|LINE|L1 -144933 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 154.5-10 chr17 78883706 78883892 + 1.5 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 19402 NM_001243541 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 315-41 chrX 65703117 65703487 + 1.5 NA intron (NM_002444, intron 1 of 12) MIRb|SINE|MIR 35648 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 453-14 chr19 38746085 38746549 + 1.5 NA Intergenic AluSz|SINE|Alu -1843 NM_144691 147968 Hs.731775 NM_144691 ENSG00000182472 CAPN12 - calpain 12 protein-coding 258.5-5 chr14 36079093 36079307 + 1.5 NA intron (NR_073454, intron 1 of 2) L1M5|LINE|L1 8773 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 504.5-8 chr6 125416043 125416458 + 1.5 NA Intergenic Intergenic -114283 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 244.5-22 chr2 162620428 162620747 + 1.5 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -148349 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 211.5-37 chr8 131737264 131737564 + 1.5 NA Intergenic L3|LINE|CR1 -166679 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 434-19 chr5 117052899 117053301 + 1.5 NA Intergenic Intergenic -290891 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 192.5-3 chr1 186819027 186819256 + 1.5 NA Intergenic Intergenic -9759 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 403-24 chr2 77944456 77944964 + 1.5 NA intron (NR_110288, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 10316 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 495-5 chr15 26505153 26505833 + 1.5 NA Intergenic Intergenic 123597 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 347-22 chr5 11574314 11574677 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) 14422 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 277-10 chr12 51098987 51099256 + 1.5 NA intron (NM_005653, intron 12 of 14) MIR|SINE|MIR -15525 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 210.5-11 chr17 28890123 28890355 + 1.5 NA intron (NM_004475, intron 1 of 10) Tigger12c|DNA|TcMar-Tigger 7494 NM_001330170 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 208.5-17 chr20 59513181 59513437 + 1.5 NA Intergenic L1ME1|LINE|L1 -64200 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 188.5-13 chr2 103611342 103611565 + 1.5 NA Intergenic L1ME2|LINE|L1 -627024 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 334.5-11 chr16 83288281 83288652 + 1.5 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -219880 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 339.5-30 chr7 86361786 86362153 + 1.5 NA Intergenic L1MC3|LINE|L1 -281940 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 212 chr1 221989952 221990205 + 1.5 NA Intergenic Intergenic -11558 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 392.5-11 chr14 77634879 77635140 + 1.5 NA Intergenic AluY|SINE|Alu -18242 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 471.5-6 chr11 36225370 36225818 + 1.5 NA intron (NM_001304264, intron 4 of 5) MIR|SINE|MIR 63830 NM_014186 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 335.5-2 chr1 177353697 177353955 + 1.5 NA intron (NR_126001, intron 1 of 3) intron (NR_126001, intron 1 of 3) 2240 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 317.5-21 chr20 56127232 56127485 + 1.5 NA Intergenic Intergenic -121374 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 404.5-2 chr1 171536431 171536881 + 1.5 NA intron (NM_015172, intron 14 of 33) intron (NM_015172, intron 14 of 33) 51126 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 484.5-16 chr22 47608258 47608764 + 1.5 NA Intergenic Intergenic 23058 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 218-3 chr10 11257557 11257778 + 1.5 NA intron (NM_001025076, intron 4 of 13) intron (NM_001025076, intron 4 of 13) 87007 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 277.5-35 chr8 131660376 131660684 + 1.5 NA Intergenic Intergenic -243563 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 249.5-32 chr6 123419033 123419279 + 1.5 NA intron (NM_001251987, intron 12 of 20) LTR47A|LTR|ERVL -20448 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 291.5-11 chr2 32984095 32984425 + 1.5 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 37307 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 523.5 chr11 18924413 18925032 + 1.5 NA Intergenic L1PA8|LINE|L1 10280 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 254.5-38 chr3 121877392 121877765 + 1.5 NA intron (NM_018456, intron 5 of 5) L1MEi|LINE|L1 -16823 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 261.5-22 chr20 47167114 47167288 + 1.5 NA TTS (NR_037410) TTS (NR_037410) 234 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 194.5-9 chr12 115915529 115915814 + 1.5 NA Intergenic MIR3|SINE|MIR 232983 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 268-30 chr8 133170744 133171128 + 1.5 NA Intergenic MIRb|SINE|MIR -20103 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 327-23 chr2 15143875 15144150 + 1.5 NA Intergenic MLT2A1|LTR|ERVL 417322 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 275.5-8 chr10 69338475 69338845 + 1.5 NA intron (NM_001322367, intron 1 of 16) intron (NM_001322367, intron 1 of 16) 19813 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 307-14 chr2 43479047 43479452 + 1.5 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 116725 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 276.5-9 chr12 45777146 45777483 + 1.5 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 47605 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 550-11 chr18 10875965 10876488 + 1.5 NA intron (NM_022068, intron 4 of 51) (AAAAC)n|Simple_repeat|Simple_repeat -116577 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 265-39 chr9 68462809 68463125 + 1.5 NA intron (NM_021965, intron 6 of 10) intron (NM_021965, intron 6 of 10) 77900 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 191.5-20 chr5 54483218 54483402 + 1.5 NA Intergenic Intergenic 27611 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 333.5-6 chr12 126798357 126798677 + 1.5 NA Intergenic Intergenic -26255 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 188-13 chr21 45100481 45100695 + 1.5 NA intron (NM_001346688, intron 1 of 11) intron (NM_001346688, intron 1 of 11) 25537 NM_001346688 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 257.5-22 chr2 50835081 50835365 + 1.5 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -138961 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 563-3 chr12 47035686 47036221 + 1.5 NA Intergenic Intergenic -43650 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 418-3 chr1 240763798 240764350 + 1.5 NA Intergenic Intergenic -151919 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 227.5-17 chr4 34258788 34258988 + 1.5 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 10859 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 206.5-13 chr13 111654754 111654947 + 1.5 NA Intergenic Intergenic 58841 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 184.5-19 chr5 81549134 81549357 + 1.5 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) -155111 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 531.5-16 chr9 104323592 104324124 + 1.5 NA Intergenic HAL1b|LINE|L1 53629 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 445-19 chr3 160839844 160840311 + 1.5 NA intron (NM_139245, intron 1 of 3) MER103C|DNA|hAT-Charlie -2072 NM_001317912 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 161.5-10 chr17 78499548 78499744 + 1.5 NA non-coding (NR_102401, exon 6 of 6) non-coding (NR_102401, exon 6 of 6) 14736 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 461.5-3 chr10 127907603 127908087 + 1.5 NA intron (NM_001323356, intron 1 of 19) CpG 742 NM_001316676 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 283-19 chr2 70139817 70140128 + 1.5 NA Intergenic AluSz|SINE|Alu -14656 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 283.5-11 chr12 78776046 78776469 + 1.5 NA Intergenic L2a|LINE|L2 -87725 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 309-39 chr6 77974476 77974875 + 1.5 NA Intergenic AluSx1|SINE|Alu 321636 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 291.5-10 chr16 76005038 76005463 + 1.5 NA Intergenic MIR|SINE|MIR -272151 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 253-29 chr5 68546578 68546793 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 254108 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 294.5-12 chr14 41259248 41259624 + 1.5 NA Intergenic Intergenic 304725 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 140.5-21 chr5 146514626 146514762 + 1.5 NA TTS (NM_194251) TTS (NM_194251) 1419 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 158-11 chr9 37994685 37994833 + 1.5 NA intron (NM_003028, intron 2 of 5) intron (NM_003028, intron 2 of 5) 74468 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 363.5-30 chr7 86759559 86759843 + 1.5 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 115787 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 392-19 chr2 38938936 38939221 + 1.5 NA intron (NM_001145451, intron 7 of 15) AluSz|SINE|Alu 19715 NM_001367623 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 359-14 chr14 75394964 75395501 + 1.5 NA Intergenic Intergenic -32492 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 197.5-27 chr4 41505584 41505770 + 1.5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -32480 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 328.5-30 chr5 89639745 89640204 + 1.5 NA Intergenic L1MA4A|LINE|L1 376746 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 371.5-6 chr11 73821011 73821328 + 1.5 NA intron (NM_001318499, intron 4 of 8) AluJr|SINE|Alu 33295 NM_016055 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 392-21 chr20 22492334 22492696 + 1.5 NA Intergenic Intergenic -71872 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 304.5-23 chr17 75598456 75598726 + 1.5 NA intron (NM_001309242, intron 13 of 62) intron (NM_001309242, intron 13 of 62) 10533 NM_001309242 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB protein-coding 205.5-12 chr2 118685514 118685738 + 1.5 NA Intergenic Intergenic -82660 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 416.5-22 chr8 144095819 144096428 + 1.5 NA intron (NM_001916, intron 2 of 6) intron (NM_001916, intron 2 of 6) 1047 NM_001916 1537 Hs.289271 NM_001916 ENSG00000179091 CYC1 MC3DN6|UQCR4 cytochrome c1 protein-coding 515.5 chr10 75970758 75971249 + 1.5 NA intron (NR_131178, intron 3 of 7) MIRc|SINE|MIR 188242 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 233-8 chr14 42642576 42642932 + 1.5 NA Intergenic Intergenic 1035898 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 255.5-4 chr10 81853761 81853963 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -21332 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 186.5-2 chr1 104680668 104680844 + 1.5 NA Intergenic L1MA8|LINE|L1 607733 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 352.5-10 chr14 48456772 48457180 + 1.5 NA Intergenic Intergenic -661962 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 406-11 chr2 65589243 65589732 + 1.5 NA Intergenic Intergenic -156888 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 197.5-26 chr3 84642297 84642494 + 1.5 NA intron (NR_033860, intron 20 of 20) Tigger3a|DNA|TcMar-Tigger 227180 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 215-8 chr11 72913795 72913959 + 1.5 NA intron (NM_014824, intron 9 of 19) L1PA12|LINE|L1 99466 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 217-31 chr9 136433575 136433742 + 1.5 NA intron (NM_001318502, intron 3 of 9) intron (NM_001318502, intron 3 of 9) 6187 NM_001318502 56623 Hs.120998 NM_019892 ENSG00000148384 INPP5E CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin inositol polyphosphate-5-phosphatase E protein-coding 296-25 chr5 23059654 23059981 + 1.5 NA Intergenic AluSq4|SINE|Alu -206473 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 378-16 chr20 47237111 47237543 + 1.5 NA intron (NM_001281771, intron 14 of 20) AluSz|SINE|Alu 70360 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 228-4 chr15 62502382 62502665 + 1.5 NA Intergenic Intergenic 142658 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 258-4 chr12 6637702 6637891 + 1.5 NA TTS (NM_032489) TTS (NM_032489) -1837 NM_020400 57121 Hs.155538 NM_020400 ENSG00000184574 LPAR5 GPR92|GPR93|KPG_010|LPA5 lysophosphatidic acid receptor 5 protein-coding 298.5-27 chr9 27200283 27200661 + 1.5 NA intron (NM_001290077, intron 11 of 21) intron (NM_001290077, intron 11 of 21) 82321 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 156-11 chr2 34293129 34293329 + 1.5 NA intron (NR_126403, intron 5 of 5) intron (NR_126403, intron 5 of 5) 226003 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 285.5-8 chr17 56040623 56040825 + 1.5 NA Intergenic MIR3|SINE|MIR -112751 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 304-32 chr5 58276007 58276314 + 1.5 NA Intergenic Intergenic -153819 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 360-3 chr1 112058712 112059033 + 1.5 NA Intergenic Charlie8|DNA|hAT-Charlie 68336 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 321-18 chr3 98512093 98512593 + 1.5 NA Intergenic Intergenic 10559 NM_001040181 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745|Z38 claudin domain containing 1 protein-coding 337 chr1 13592627 13593038 + 1.5 NA intron (NM_001006624, intron 1 of 5) AluSp|SINE|Alu 7372 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 254.5-11 chr14 47987366 47987569 + 1.5 NA Intergenic Intergenic -192453 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 279-11 chr14 95071599 95071915 + 1.5 NA Intergenic Intergenic 61746 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 235-41 chrX 153166622 153166795 + 1.5 NA Intergenic Intergenic -12576 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 136.5-22 chr9 99481861 99482000 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -106673 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 433.5-22 chr3 95331854 95332205 + 1.5 NA Intergenic MIRb|SINE|MIR 351164 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 146.5-5 chr10 28698636 28698820 + 1.5 NA Intergenic Intergenic 21207 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 261.5-20 chr2 101325720 101326083 + 1.5 NA Intergenic L1M4|LINE|L1 16451 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 209.5-25 chr4 44504647 44504838 + 1.5 NA Intergenic L1MB7|LINE|L1 -55933 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 440.5-17 chr21 27107675 27108085 + 1.5 NA Intergenic Intergenic -140792 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 297.5-25 chr3 104334478 104334721 + 1.5 NA Intergenic Intergenic -810483 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 217.5-17 chr17 57275810 57275981 + 1.5 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 18876 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 276-23 chr2 16930556 16930869 + 1.5 NA Intergenic Intergenic -264878 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 198.5 chr1 43897838 43898107 + 1.5 NA intron (NM_174967, intron 6 of 6) intron (NM_174967, intron 6 of 6) -35348 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 282-22 chr7 6116685 6117065 + 1.5 NA intron (NM_032172, intron 3 of 17) intron (NM_032172, intron 3 of 17) 11926 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 214.5-2 chr10 22487824 22488122 + 1.5 NA Intergenic AluJb|SINE|Alu -50044 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 304.5-6 chr1 224058734 224059133 + 1.5 NA Intergenic Intergenic -55178 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 280-7 chr11 62952298 62952555 + 1.5 NA Intergenic AluJr4|SINE|Alu -31063 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 316.5-10 chr18 71121443 71121732 + 1.5 NA Intergenic L1HS|LINE|L1 457369 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 277.5-6 chr12 3129855 3130057 + 1.5 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 52577 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 283.5-36 chr8 125844278 125844475 + 1.5 NA Intergenic Intergenic 106821 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 205-16 chr17 64271272 64271476 + 1.5 NA Intergenic AluSx|SINE|Alu -8114 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 347-23 chr7 28644265 28644661 + 1.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -41670 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 220-17 chr2 65923525 65923780 + 1.5 NA Intergenic Intergenic 434676 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 158-5 chr14 65967967 65968072 + 1.5 NA Intergenic Intergenic 496917 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 347.5-5 chr12 2283124 2283467 + 1.5 NA intron (NR_046769, intron 1 of 2) MLT1L|LTR|ERVL-MaLR 13519 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 229-23 chr5 43845227 43845397 + 1.5 NA Intergenic Intergenic -242082 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 249-23 chr3 29962023 29962256 + 1.5 NA intron (NM_001003792, intron 11 of 13) intron (NM_001003792, intron 11 of 13) -27983 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 351-25 chr20 36758421 36758826 + 1.5 NA intron (NM_001145317, intron 5 of 9) intron (NM_001145317, intron 5 of 9) -12533 NM_032013 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 346-8 chr10 78438456 78438752 + 1.5 NA Intergenic MIRb|SINE|MIR 171262 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 387-5 chr10 110107644 110108033 + 1.5 NA intron (NM_001320594, intron 3 of 15) intron (NM_001320594, intron 3 of 15) -99457 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 297.5-22 chr2 217408520 217408868 + 1.5 NA intron (NR_026597, intron 8 of 12) MER41A|LTR|ERV1 125961 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 282-13 chr17 69466686 69466961 + 1.5 NA intron (NM_002758, intron 1 of 11) Tigger16b|DNA|TcMar-Tigger 18709 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 391-3 chr10 44835456 44835907 + 1.5 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -75635 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 357-41 chr7 46176789 46177272 + 1.5 NA Intergenic AluSx1|SINE|Alu -255758 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 238-5 chr1 182013639 182013931 + 1.5 NA Intergenic Intergenic 47927 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 443.5-11 chr3 39282829 39283215 + 1.5 NA Intergenic AluJo|SINE|Alu -1287 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 221-26 chr8 40103159 40103474 + 1.5 NA Intergenic Intergenic -50166 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 354.5-10 chr15 39924323 39924659 + 1.5 NA Intergenic MLT2B4|LTR|ERVL -3599 NM_001271854 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 397.5-25 chr4 125216967 125217388 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -99235 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 537.5-14 chr4 63162684 63163334 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1001244 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 186-2 chr11 29441390 29441588 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR -152924 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 298-18 chr4 76898541 76898844 + 1.5 NA promoter-TSS (NM_001029870) promoter-TSS (NM_001029870) -548 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 249.5-27 chr5 50712880 50713081 + 1.5 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 45566 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 568.5-4 chr2 29270924 29271614 + 1.5 NA intron (NM_004304, intron 11 of 28) intron (NM_004304, intron 11 of 28) -47369 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 265.5-40 chr8 21876274 21876666 + 1.5 NA Intergenic Tigger16a|DNA|TcMar-Tigger 37220 NM_003974 9046 Hs.71215 NM_003974 ENSG00000147443 DOK2 p56DOK|p56dok-2 docking protein 2 protein-coding 322.5-17 chr20 12283511 12283851 + 1.5 NA Intergenic Intergenic 365788 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 367.5-29 chr6 2455589 2455992 + 1.5 NA Intergenic Intergenic -178710 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 171.5-22 chr5 81932290 81932481 + 1.5 NA Intergenic Intergenic -39638 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 212.5-30 chr7 131332207 131332420 + 1.5 NA intron (NM_001321316, intron 1 of 17) (AT)n|Simple_repeat|Simple_repeat 4437 NM_001321316 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 361.5-20 chr3 103571460 103571852 + 1.5 NA Intergenic Intergenic -47540 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 159-5 chr8 84890921 84891132 + 1.5 NA intron (NM_001287244, intron 7 of 7) L2|LINE|L2 185099 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 234.5-31 chr8 59374432 59374710 + 1.5 NA Intergenic Intergenic 255361 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 148-2 chr11 12579298 12579462 + 1.5 NA Intergenic L1MEc|LINE|L1 -95041 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 272-3 chr10 18983951 18984326 + 1.5 NA Intergenic MLT2C1|LTR|ERVL -64663 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 182.5-17 chr21 7963161 7963349 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -133623 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 505-6 chr12 55033759 55034225 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 14018 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 309-19 chr2 40474542 40474927 + 1.5 NA intron (NM_001112802, intron 1 of 7) MIR|SINE|MIR -22644 NM_001351491 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 398.5-16 chr4 85334272 85334656 + 1.5 NA Intergenic Intergenic -140686 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 255.5-9 chr17 3378640 3378927 + 1.5 NA Intergenic L2b|LINE|L2 19627 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 164.5-22 chr4 138662292 138662485 + 1.5 NA Intergenic Intergenic 350258 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 427 chr1 38613634 38614170 + 1.5 NA Intergenic Intergenic 138706 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 498.5-11 chr3 48074759 48075333 + 1.5 NA intron (NM_002375, intron 1 of 18) L1M4|LINE|L1 13802 NM_002375 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 209-20 chr22 30621165 30621392 + 1.5 NA intron (NM_000355, intron 7 of 8) AluSx1|SINE|Alu 14104 NM_000355 6948 Hs.417948 NM_000355 ENSG00000185339 TCN2 D22S676|D22S750|II|TC|TC II|TC-2|TC2|TCII transcobalamin 2 protein-coding 320.5-4 chr10 117215218 117215593 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie 17916 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 236-12 chr17 56474237 56474537 + 1.5 NA intron (NM_001370326, intron 15 of 20) Plat_L3|LINE|CR1 -119312 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 173-3 chr12 89279549 89279736 + 1.5 NA Intergenic L1PA17|LINE|L1 72859 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 301.5-17 chr6 18335763 18336088 + 1.5 NA Intergenic Intergenic -51425 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 270 chr1 49604748 49605073 + 1.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -132825 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 191.5-14 chr20 43696962 43697157 + 1.5 NA intron (NM_001278610, intron 5 of 12) L1ME3G|LINE|L1 29943 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 217.5-28 chr4 80286724 80287006 + 1.5 NA 3' UTR (NM_033143, exon 2 of 2) 3' UTR (NM_033143, exon 2 of 2) 18600 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 180.5-18 chr6 3139090 3139247 + 1.5 NA intron (NR_026649, intron 6 of 7) MIRb|SINE|MIR 18376 NM_001069 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 343-11 chr14 61986867 61987267 + 1.5 NA intron (NM_001367657, intron 3 of 6) L2c|LINE|L2 59372 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 204.5-25 chr3 104984910 104985084 + 1.5 NA Intergenic L1ME1|LINE|L1 -381716 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 518-11 chr18 36900999 36901489 + 1.5 NA TTS (NR_134585) TTS (NR_134585) 22570 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 261.5-2 chr1 162071093 162071395 + 1.5 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) 1553 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 389-27 chr21 42528365 42528646 + 1.5 NA intron (NM_001320537, intron 3 of 19) intron (NM_001320537, intron 3 of 19) 14653 NM_001320537 54020 Hs.547009 NM_018964 ENSG00000160190 SLC37A1 G3PP solute carrier family 37 member 1 protein-coding 280.5-37 chr8 59168424 59168713 + 1.5 NA Intergenic L1ME3A|LINE|L1 49358 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 125.5-5 chr16 82077778 82077878 + 1.5 NA intron (NM_002153, intron 3 of 4) L1MA3|LINE|L1 42575 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 254-3 chr1 218501253 218501612 + 1.5 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) -8663 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 269-6 chr10 36786076 36786402 + 1.5 NA Intergenic Intergenic -339618 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 505 chr1 196154213 196154672 + 1.5 NA Intergenic L1MA9|LINE|L1 -65727 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 304.5-18 chr14 86650557 86651031 + 1.5 NA Intergenic L1PA16|LINE|L1 -254984 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 363-26 chr5 177571520 177571981 + 1.5 NA Intergenic AluJo|SINE|Alu -17187 NM_001190946 54540 Hs.484289 NM_019057 ENSG00000146067 FAM193B IRIZIO family with sequence similarity 193 member B protein-coding 441.5-2 chr1 59667528 59667966 + 1.5 NA intron (NM_001350794, intron 13 of 14) L2c|LINE|L2 65549 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 493.5-8 chr15 68632895 68633325 + 1.5 NA intron (NM_001190457, intron 1 of 11) intron (NM_001190457, intron 1 of 11) 1122 NM_001190457 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 177-17 chr7 5207562 5207680 + 1.5 NA intron (NM_016003, intron 2 of 11) L1ME3A|LINE|L1 -6648 NM_001033520 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 536.5-13 chr4 62403902 62404415 + 1.5 NA Intergenic MIR|SINE|MIR -242393 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 621-18 chr7 143492496 143492921 + 1.5 NA intron (NR_033897, intron 2 of 4) intron (NR_033897, intron 2 of 4) 14835 NM_176883 259287 Hs.650648 NM_176883 ENSG00000221855 TAS2R41 T2R41|T2R59 taste 2 receptor member 41 protein-coding 134-6 chr5 81133552 81133659 + 1.5 NA intron (NM_006909, intron 17 of 26) intron (NM_006909, intron 17 of 26) -99715 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 199-16 chr3 132199065 132199256 + 1.5 NA Intergenic Intergenic -118247 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 237-4 chr12 9681713 9682030 + 1.5 NA intron (NM_001197318, intron 2 of 3) intron (NM_001197318, intron 2 of 3) 12158 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 351.5-12 chr2 194520117 194520450 + 1.5 NA Intergenic L1MC5a|LINE|L1 176014 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 167.5-7 chr13 61041943 61042093 + 1.5 NA Intergenic Intergenic 157862 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 198-2 chr11 21188872 21189080 + 1.5 NA intron (NM_201551, intron 13 of 18) L1ME3C|LINE|L1 519390 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 345-21 chr2 47087261 47087550 + 1.5 NA intron (NM_001163561, intron 6 of 6) intron (NM_001163561, intron 6 of 6) 67903 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 347-2 chr10 71554111 71554407 + 1.5 NA intron (NM_052836, intron 6 of 12) AluJo|SINE|Alu -42339 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 305-34 chr3 187112318 187112691 + 1.5 NA Intergenic (TCTTTC)n|Simple_repeat|Simple_repeat 26992 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 265-14 chr16 17773768 17774002 + 1.5 NA Intergenic Intergenic -302925 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 225-27 chr5 129870082 129870258 + 1.5 NA Intergenic L1PA14|LINE|L1 -34295 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 363.5-23 chr4 82566340 82566904 + 1.5 NA Intergenic LTR78|LTR|ERV1 -4369 NM_001353454 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 373.5-22 chr5 85173816 85174359 + 1.5 NA Intergenic Intergenic -789207 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 265.5-14 chr15 59280289 59280526 + 1.5 NA intron (NM_004998, intron 1 of 27) AluSq2|SINE|Alu 73564 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 285-26 chr7 13112682 13113090 + 1.5 NA Intergenic MIR3|SINE|MIR 425253 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 338.5-8 chr11 111050191 111050525 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 46960 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 220.5-19 chr3 87923175 87923477 + 1.5 NA intron (NM_001322210, intron 2 of 2) L1MA5|LINE|L1 -59250 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 157.5-13 chr2 230640945 230641098 + 1.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger 59508 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 195.5-26 chr5 117497883 117498111 + 1.5 NA intron (NR_046089, intron 3 of 5) intron (NR_046089, intron 3 of 5) 82485 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 257.5-14 chr14 75905056 75905277 + 1.5 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 76829 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 284.5 chr1 21747208 21747512 + 1.5 NA intron (NM_001350167, intron 7 of 26) intron (NM_001350167, intron 7 of 26) 35789 NM_001350167 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 263.5-6 chr13 26824348 26824624 + 1.5 NA Intergenic Intergenic -63700 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 249.5-29 chr5 80469441 80469705 + 1.5 NA intron (NR_146172, intron 17 of 20) intron (NR_146172, intron 17 of 20) -18527 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 185-4 chr16 78926562 78926744 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 674084 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 237.5-31 chrX 150510614 150510796 + 1.5 NA intron (NM_005491, intron 6 of 6) intron (NM_005491, intron 6 of 6) -57892 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 422.5 chr1 38650516 38650989 + 1.5 NA Intergenic L1MB3|LINE|L1 175556 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 187.5-28 chr7 16687808 16687988 + 1.5 NA intron (NM_001362717, intron 6 of 11) intron (NM_001362717, intron 6 of 11) 26684 NM_001362719 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 303 chr1 27756072 27756294 + 1.5 NA intron (NM_001143914, intron 6 of 7) MamRep605|LTR?|LTR? -17036 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 316-45 chr8 101862137 101862417 + 1.5 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -71308 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 158-10 chr5 74233435 74233658 + 1.5 NA Intergenic Intergenic 74779 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 531-5 chr12 75914616 75915167 + 1.5 NA Intergenic LTR82B|LTR|ERVL 116885 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 391.5-30 chr4 60528024 60528302 + 1.5 NA Intergenic AluSx3|SINE|Alu -394456 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 367-11 chr12 1519932 1520366 + 1.5 NA Intergenic Intergenic 12043 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 318.5-11 chr15 96009222 96009462 + 1.5 NA Intergenic Intergenic 118499 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 170.5-9 chr14 84451039 84451255 + 1.5 NA Intergenic Intergenic -820785 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 141-9 chr7 88041594 88041709 + 1.5 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 107400 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 558-3 chr12 62541240 62541833 + 1.5 NA intron (NM_001278469, intron 19 of 35) MIRb|SINE|MIR 61898 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 484-6 chr1 211247992 211248475 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -11044 NM_001350070 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 370-10 chr14 73781003 73781453 + 1.5 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 5980 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 349.5-16 chr17 67001445 67001919 + 1.5 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 36975 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 318-9 chr12 25301645 25301882 + 1.5 NA Intergenic Intergenic -50834 NM_001369787 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 342-4 chr1 243990664 243991157 + 1.5 NA intron (NR_033883, intron 2 of 11) THE1B|LTR|ERVL-MaLR -58029 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 271.5-29 chr5 6873233 6873558 + 1.5 NA Intergenic L1PREC2|LINE|L1 -45474 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 240-37 chr5 82180337 82180546 + 1.5 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 97913 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 171-7 chr17 83130165 83130315 + 1.5 NA Intergenic AluY|SINE|Alu 49094 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 209.5-7 chr11 106689327 106689466 + 1.5 NA intron (NM_001256424, intron 8 of 8) intron (NM_001256424, intron 8 of 8) 329080 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 233-25 chr6 153654374 153654685 + 1.5 NA Intergenic AluJb|SINE|Alu -355967 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 278-29 chr9 89525424 89525798 + 1.5 NA Intergenic Intergenic -27638 NM_001371194 173.5-20 chr6 65357465 65357658 + 1.5 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 56143 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 262-13 chr14 50712842 50713100 + 1.5 NA Intergenic L2|LINE|L2 -44665 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 492-7 chr12 96810849 96811336 + 1.5 NA intron (NM_001306084, intron 63 of 67) MIR3|SINE|MIR -96165 NM_001135176 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 389.5-30 chrX 77912055 77912561 + 1.5 NA intron (NM_001282224, intron 1 of 21) L2c|LINE|L2 1615 NM_000052 538 Hs.496414 NM_000052 ENSG00000165240 ATP7A DSMAX|MK|MNK|SMAX3 ATPase copper transporting alpha protein-coding 259-9 chr16 6990073 6990385 + 1.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 216420 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 397.5-31 chr7 36918697 36919181 + 1.5 NA TTS (NR_031604) TTS (NR_031604) 493 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 134.5-14 chr3 183649430 183649536 + 1.5 NA intron (NM_001349419, intron 3 of 8) L1ME4a|LINE|L1 13860 NM_001349424 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 283-39 chr5 75371800 75372207 + 1.5 NA 3' UTR (NM_001130105, exon 19 of 19) 3' UTR (NM_001130105, exon 19 of 19) 34783 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 348.5-11 chr20 53793609 53793954 + 1.5 NA Intergenic AluSx3|SINE|Alu 81928 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 342.5-40 chrX 47452305 47452644 + 1.5 NA intron (NM_001324150, intron 5 of 5) LTR41|LTR|ERVL 15195 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 368-28 chr4 34288096 34288342 + 1.5 NA Intergenic Intergenic -18472 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 163-4 chr12 17522236 17522417 + 1.5 NA Intergenic Intergenic 66752 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 385.5-32 chr3 6282582 6282988 + 1.5 NA Intergenic Intergenic 522664 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 152.5-28 chr8 111152361 111152504 + 1.5 NA intron (NR_125418, intron 1 of 3) L1PA16|LINE|L1 83771 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 376.5-13 chr2 74582738 74583110 + 1.5 NA intron (NM_001321739, intron 4 of 10) AluSq|SINE|Alu 28764 NM_001381 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 400.5-7 chr11 83813510 83813921 + 1.5 NA intron (NM_001142699, intron 17 of 27) L3|LINE|CR1 -131290 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 463-23 chr6 50000328 50000837 + 1.5 NA Intergenic Intergenic 21399 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 293-25 chr5 150984978 150985236 + 1.5 NA Intergenic Intergenic -35484 NM_002084 2878 Hs.386793 NM_002084 ENSG00000211445 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 protein-coding 259-14 chr20 37072371 37072658 + 1.5 NA intron (NM_002895, intron 2 of 21) intron (NM_002895, intron 2 of 21) 23483 NM_002895 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 319.5-8 chr13 27859656 27860015 + 1.5 NA intron (NR_047484, intron 1 of 4) intron (NR_047484, intron 1 of 4) 57456 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 382.5-2 chr1 216118415 216118950 + 1.5 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 46217 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 226.5-14 chr2 29191609 29191820 + 1.5 NA Intergenic Intergenic 32186 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 202.5-26 chr7 28532133 28532307 + 1.5 NA intron (NM_182899, intron 3 of 9) MLT1F|LTR|ERVL-MaLR 96605 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 244-8 chr15 58095021 58095352 + 1.5 NA Intergenic MIR|SINE|MIR -29263 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 458.5-14 chr5 50902268 50902755 + 1.5 NA Intergenic MLT2B1|LTR|ERVL 67676 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 151.5-16 chr3 119630046 119630237 + 1.5 NA TTS (NM_001206961) TTS (NM_001206961) 29870 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 162.5-7 chr15 76514107 76514267 + 1.5 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -72460 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 232-7 chr10 110456594 110456748 + 1.5 NA Intergenic Intergenic -41236 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 272-2 chr1 244177454 244177763 + 1.5 NA Intergenic Intergenic 124403 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 344.5-25 chr5 16729658 16730114 + 1.5 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -112828 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 314.5-21 chr20 7996361 7996749 + 1.5 NA intron (NM_021156, intron 4 of 7) L2b|LINE|L2 23206 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 200.5-28 chr8 71525009 71525275 + 1.5 NA intron (NM_001370334, intron 2 of 19) MIRc|SINE|MIR 22562 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 228.5-4 chr1 244346588 244346839 + 1.5 NA Intergenic Intergenic -5922 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 215-33 chr8 121080032 121080296 + 1.5 NA Intergenic Intergenic -268118 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 409-37 chr9 122458409 122458900 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 19272 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 298.5-4 chr10 41860286 41860583 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 507611 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 253.5-32 chr7 38061239 38061441 + 1.5 NA Intergenic L1M5|LINE|L1 -116905 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 285.5-15 chr4 45826577 45826817 + 1.5 NA Intergenic L2c|LINE|L2 297357 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 182-7 chr17 79284239 79284427 + 1.5 NA intron (NM_001082575, intron 3 of 14) intron (NM_001082575, intron 3 of 14) 209396 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 207-14 chr2 201736806 201737005 + 1.5 NA intron (NM_020919, intron 12 of 33) L1M5|LINE|L1 -38261 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 314.5-24 chr22 48116217 48116535 + 1.5 NA Intergenic AluJb|SINE|Alu -157988 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 162-4 chr15 87963421 87963643 + 1.5 NA intron (NM_001320135, intron 12 of 15) MER47A|DNA|TcMar-Tigger -17264 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 189-18 chr2 149943788 149944053 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -84729 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 219-35 chr7 93416985 93417156 + 1.5 NA Intergenic L1MB1|LINE|L1 65785 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 355-15 chr2 15409034 15409581 + 1.5 NA intron (NR_052013, intron 25 of 50) L1MEd|LINE|L1 152027 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 258.5-22 chr5 151435727 151435945 + 1.5 NA Intergenic L1MEg|LINE|L1 -1210 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 534-8 chr12 16011831 16012319 + 1.5 NA intron (NM_015954, intron 6 of 8) L2b|LINE|L2 100743 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 119.5-14 chr6 140537745 140537856 + 1.5 NA Intergenic Intergenic -146014 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 373-27 chr21 15509737 15510030 + 1.5 NA Intergenic L2c|LINE|L2 -220051 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 290.5-5 chr1 184730297 184730572 + 1.5 NA intron (NM_025191, intron 6 of 19) AluJr|SINE|Alu 24424 NM_025191 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 443.5-18 chr8 134813947 134814425 + 1.5 NA Intergenic Intergenic -9241 NR_029599 407033 NR_029599 ENSG00000199153 MIR30D MIRN30D|mir-30d microRNA 30d ncRNA 206-16 chr5 6078096 6078270 + 1.5 NA Intergenic Intergenic 259109 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 263.5-13 chr2 151540373 151540736 + 1.5 NA intron (NM_001271208, intron 137 of 182) intron (NM_001271208, intron 137 of 182) 130652 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 220-25 chr5 20279259 20279429 + 1.5 NA intron (NM_001349556, intron 1 of 13) L1MA3|LINE|L1 -26207 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 268-8 chr17 18378186 18378399 + 1.5 NA intron (NM_001145127, intron 1 of 10) intron (NM_001145127, intron 1 of 10) 514 NM_001145127 645027 Hs.462400 NM_001145127 ENSG00000214860 EVPLL - envoplakin like protein-coding 306-18 chr3 54592745 54593244 + 1.5 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 46863 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 420-9 chr15 49616929 49617517 + 1.5 NA intron (NM_152647, intron 1 of 15) HAL1|LINE|L1 3595 NM_001330293 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 368-17 chr2 36986621 36986937 + 1.5 NA intron (NM_019024, intron 35 of 35) AluSx|SINE|Alu -20243 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 246-13 chr8 17420359 17420523 + 1.5 NA Intergenic L1MB3|LINE|L1 -7090 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 192-6 chr14 65664534 65664814 + 1.5 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 193572 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 297-27 chr5 127809718 127809990 + 1.5 NA intron (NM_001317938, intron 5 of 6) MER102b|DNA|hAT-Charlie 106465 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 154.5-2 chr1 193093946 193094121 + 1.5 NA Intergenic LTR83|LTR|ERVL 11445 NM_197962 51022 Hs.458283 NM_016066 ENSG00000023572 GLRX2 CGI-133|GRX2 glutaredoxin 2 protein-coding 309-28 chr4 52227714 52227950 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X 176528 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 250.5-27 chr3 103322603 103322784 + 1.5 NA Intergenic Intergenic 201423 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 237.5-3 chr10 47227223 47227605 + 1.5 NA Intergenic Intergenic -72783 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 312-35 chr9 95370238 95370677 + 1.5 NA Intergenic Intergenic -52748 NM_000136 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 431-4 chr10 22937491 22937902 + 1.5 NA intron (NM_001282747, intron 2 of 15) intron (NM_001282747, intron 2 of 15) 9643 NM_001282745 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 289.5-43 chrX 125259869 125260181 + 1.5 NA Intergenic Intergenic -59846 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 227.5-22 chr6 57174840 57175185 + 1.5 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 2686 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 352.5-26 chr5 154846913 154847414 + 1.5 NA intron (NM_032385, intron 1 of 8) AluJr|SINE|Alu 3440 NM_032385 10826 Hs.519694 NM_016348 ENSG00000170271 FAXDC2 C5orf4 fatty acid hydroxylase domain containing 2 protein-coding 183.5-12 chr14 87022331 87022605 + 1.5 NA Intergenic L1ME3F|LINE|L1 116690 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 181-7 chr19 44823394 44823553 + 1.5 NA Intergenic LTR102_Mam|LTR|ERVL 14414 NM_001013257 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 184.5 chr1 95613338 95613486 + 1.5 NA Intergenic Intergenic 103296 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 328-26 chr4 108137487 108137747 + 1.5 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 29180 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 542-7 chr14 21128321 21128819 + 1.5 NA Intergenic L1MA3|LINE|L1 -23866 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 135-4 chr3 97188799 97188999 + 1.5 NA intron (NM_001080448, intron 3 of 17) L1ME3G|LINE|L1 -250708 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 238.5-17 chr18 53030177 53030402 + 1.5 NA intron (NM_005215, intron 5 of 28) MamGypLTR1b|LTR|Gypsy -206812 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 181-8 chr2 145295493 145295613 + 1.5 NA Intergenic Intergenic 627586 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 181.5-6 chr11 83308145 83308289 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -21810 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 336.5-18 chr5 101624067 101624549 + 1.5 NA Intergenic L1MC3|LINE|L1 671976 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 255-27 chr6 82894720 82894972 + 1.5 NA intron (NR_146807, intron 10 of 10) L3|LINE|CR1 170995 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 230.5-14 chr11 31589028 31589324 + 1.5 NA intron (NM_001288725, intron 3 of 10) intron (NM_001288725, intron 3 of 10) 79409 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 217.5-34 chr8 130191259 130191487 + 1.5 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 105160 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 248 chr1 37976742 37977047 + 1.5 NA exon (NM_001320830, exon 10 of 15) exon (NM_001320830, exon 10 of 15) 13128 NM_006802 10946 Hs.77897 NM_006802 ENSG00000183431 SF3A3 PRP9|PRPF9|SAP61|SF3a60 splicing factor 3a subunit 3 protein-coding 401-29 chr5 68509999 68510422 + 1.5 NA Intergenic AluSc|SINE|Alu 217633 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 287.5-11 chr18 645277 645468 + 1.5 NA intron (NM_199167, intron 8 of 8) L1ME4c|LINE|L1 -12281 NM_001354868 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 464-14 chr2 126028830 126029207 + 1.5 NA Intergenic L1M4b|LINE|L1 88967 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 389.5-2 chr1 63780306 63780902 + 1.5 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 6587 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 327.5-20 chr5 65912010 65912244 + 1.5 NA Intergenic Intergenic -14427 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 269.5-31 chr3 16305727 16305936 + 1.5 NA 3' UTR (NM_138381, exon 9 of 9) 3' UTR (NM_138381, exon 9 of 9) 40619 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 440.5-11 chr17 64545142 64545540 + 1.5 NA 3' UTR (NM_022739, exon 19 of 19) 3' UTR (NM_022739, exon 19 of 19) 38364 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 334-4 chr1 244618670 244619026 + 1.5 NA intron (NM_001130957, intron 20 of 21) intron (NM_001130957, intron 20 of 21) -34200 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 168-14 chr4 38739803 38739930 + 1.5 NA Intergenic MIRb|SINE|MIR 43124 NM_001195108 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 373-33 chr4 115177970 115178384 + 1.5 NA Intergenic Intergenic -64557 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 448.5-2 chr10 115115016 115115455 + 1.5 NA intron (NR_074088, intron 2 of 9) L1MA7|LINE|L1 21870 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 422.5-22 chr7 139963562 139963913 + 1.5 NA intron (NM_001366537, intron 8 of 11) MLT1K|LTR|ERVL-MaLR 99984 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 503-24 chr5 56636897 56637311 + 1.5 NA Intergenic Intergenic -30848 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 448-7 chr13 94179485 94179987 + 1.5 NA intron (NR_046535, intron 3 of 3) intron (NR_046535, intron 3 of 3) 8255 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 456.5-15 chr4 104053867 104054278 + 1.5 NA Intergenic Intergenic -334087 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 207.5-14 chr14 92518128 92518328 + 1.5 NA intron (NM_024832, intron 1 of 9) intron (NM_024832, intron 1 of 9) 4447 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 224.5-4 chr10 56019401 56019687 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 341715 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 430-36 chr7 85951342 85951777 + 1.5 NA Intergenic Intergenic 530437 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 292-18 chr2 196714919 196715192 + 1.5 NA intron (NM_001353340, intron 1 of 10) L1ME4b|LINE|L1 1517 NM_001353340 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 280-39 chr9 73224692 73224962 + 1.5 NA Intergenic L1PA13|LINE|L1 72962 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 503.5-7 chr15 88639771 88640218 + 1.5 NA intron (NM_001303237, intron 2 of 3) intron (NM_001303237, intron 2 of 3) 978 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 238-39 chr8 120552012 120552185 + 1.5 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 106679 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 202.5-12 chr14 88627860 88628134 + 1.5 NA TTS (NM_001326311) TTS (NM_001326311) 33577 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 203.5-29 chr7 41946479 41946705 + 1.5 NA Intergenic L2c|LINE|L2 -243502 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 307.5-34 chr7 3864526 3864935 + 1.5 NA intron (NM_152744, intron 5 of 44) LTR79|LTR|ERVL -264955 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 132.5-16 chr5 35519029 35519128 + 1.5 NA Intergenic Intergenic -98785 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 268-14 chr22 28473680 28474104 + 1.5 NA intron (NM_001145418, intron 2 of 22) MLT1B|LTR|ERVL-MaLR 14023 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 289.5 chr1 13864915 13865213 + 1.5 NA Intergenic Intergenic 115649 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 522.5-15 chr8 100389446 100390092 + 1.5 NA Intergenic MARNA|DNA|TcMar-Mariner 7006 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 190.5-10 chr2 59498871 59499022 + 1.5 NA Intergenic Intergenic 281238 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 257-36 chr4 111710393 111710588 + 1.5 NA Intergenic L2c|LINE|L2 -434964 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 170-11 chr17 73376892 73377061 + 1.5 NA intron (NM_001144952, intron 36 of 44) MIR3|SINE|MIR -64975 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 507.5-10 chr19 35681976 35682549 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -8971 NR_046420 100862728 Hs.569952 NR_046420 ENSG00000226510 UPK1A-AS1 - UPK1A antisense RNA 1 ncRNA 392.5-5 chr11 77122595 77123004 + 1.5 NA intron (NM_004055, intron 12 of 12) intron (NM_004055, intron 12 of 12) -5447 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 136 chr1 20291162 20291326 + 1.5 NA intron (NM_001039500, intron 1 of 21) intron (NM_001039500, intron 1 of 21) 369 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 241.5-42 chrUn_KI270336v1 568 923 + 1.5 NA NA SAR|Satellite|Satellite NA NA 525.5-3 chr14 43751519 43752143 + 1.5 NA Intergenic Intergenic 755452 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 263.5-33 chrX 88192738 88192948 + 1.5 NA Intergenic L1MA2|LINE|L1 -554382 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 283 chr1 24548257 24548496 + 1.5 NA intron (NR_109781, intron 2 of 2) intron (NR_109781, intron 2 of 2) 7648 NR_109781 100506985 Hs.607088 NR_109781 NCMAP-DT - NCMAP divergent transcript ncRNA 451.5-17 chr3 39008416 39008802 + 1.5 NA intron (NM_001349253, intron 2 of 29) AluSx|SINE|Alu 43335 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 270-13 chr2 47476001 47476318 + 1.5 NA intron (NM_000251, intron 12 of 15) intron (NM_000251, intron 12 of 15) -51378 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 256.5-24 chr4 65897241 65897553 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -226902 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 226-20 chr8 36042508 36042671 + 1.5 NA Intergenic Intergenic -332269 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 306-20 chr3 105415389 105415658 + 1.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 48614 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 275.5-7 chr10 61248804 61249120 + 1.5 NA Intergenic Intergenic -203677 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 434.5 chr1 245850492 245850982 + 1.5 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) 566675 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 274.5-18 chr6 68204114 68204297 + 1.5 NA Intergenic Intergenic 125694 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 279.5-20 chr8 15119573 15119839 + 1.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 118725 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 354-18 chr2 164454185 164454605 + 1.5 NA Intergenic Intergenic 114100 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 432-12 chr17 76104209 76104578 + 1.5 NA promoter-TSS (NM_001145297) promoter-TSS (NM_001145297) -606 NM_001145299 23265 Hs.514496 NM_015219 ENSG00000182473 EXOC7 2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 305.5-21 chr3 161107628 161108037 + 1.5 NA Intergenic Intergenic -2460 NM_001349146 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 252.5-24 chr6 120568494 120568725 + 1.5 NA Intergenic Intergenic 553430 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 203.5-24 chr5 58592360 58592528 + 1.5 NA intron (NM_138453, intron 1 of 4) L1ME2|LINE|L1 9369 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 401-2 chr1 51825177 51825599 + 1.5 NA intron (NM_001101662, intron 5 of 30) intron (NM_001101662, intron 5 of 30) 11014 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 477-27 chr9 86125106 86125510 + 1.5 NA Intergenic L1ME1|LINE|L1 -2232 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 192.5-2 chr1 99218858 99219073 + 1.5 NA Intergenic Intergenic -45327 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 233-13 chr2 12833341 12833646 + 1.5 NA Intergenic Intergenic 96126 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 495.5-4 chr10 77115568 77116180 + 1.5 NA intron (NM_001271519, intron 6 of 28) intron (NM_001271519, intron 6 of 28) -24957 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 407.5-17 chr5 38180482 38180928 + 1.5 NA intron (NR_147009, intron 2 of 2) MIRc|SINE|MIR 32225 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 301.5-8 chr2 21853986 21854253 + 1.5 NA Intergenic Intergenic -143467 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 315-37 chr7 126138295 126138610 + 1.5 NA Intergenic Intergenic -874161 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 208-16 chr3 119964569 119964832 + 1.5 NA intron (NM_002093, intron 2 of 11) L1MA10|LINE|L1 119948 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 182-13 chr5 82222475 82222641 + 1.5 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 55796 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 406.5-4 chr11 17809408 17809905 + 1.5 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 73708 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 198.5-13 chr2 44609857 44610142 + 1.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 248052 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 329-17 chr2 20921196 20921543 + 1.5 NA Intergenic Charlie15b|DNA|hAT-Charlie -98239 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 232-27 chr6 8347047 8347299 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 88372 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 256-17 chr3 17938815 17939145 + 1.5 NA Intergenic Intergenic -23572 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 202.5-17 chr2 232558800 232558963 + 1.5 NA intron (NM_001276336, intron 3 of 6) intron (NM_001276336, intron 3 of 6) 8075 NM_001330202 9470 Hs.292026 NM_004846 ENSG00000135930 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP eukaryotic translation initiation factor 4E family member 2 protein-coding 192.5-27 chr5 91352154 91352403 + 1.5 NA Intergenic MER50-int|LTR|ERV1 27819 NM_001329670 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 411.5-23 chr4 147179762 147180135 + 1.5 NA Intergenic Intergenic 164769 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 380.5-6 chr12 3311254 3311696 + 1.5 NA intron (NR_148995, intron 1 of 11) L2|LINE|L2 54647 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 243.5-31 chr8 110059265 110059456 + 1.5 NA Intergenic Intergenic -83589 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 284-11 chr14 53384378 53384644 + 1.5 NA Intergenic Intergenic 231157 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 434-8 chr17 61362272 61362808 + 1.5 NA intron (NR_136397, intron 2 of 2) intron (NR_136397, intron 2 of 2) 5164 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 288-29 chr3 197240891 197241287 + 1.5 NA intron (NM_001366216, intron 4 of 23) L1M3f|LINE|L1 52859 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 202-15 chr3 72207610 72207843 + 1.5 NA Intergenic Intergenic 56469 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 260.5-10 chr14 31881606 31881940 + 1.5 NA Intergenic MLT2D|LTR|ERVL -63080 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 364-30 chr5 146509617 146510050 + 1.5 NA intron (NM_006706, intron 21 of 21) intron (NM_006706, intron 21 of 21) 6280 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 171.5-16 chr22 41992870 41993015 + 1.5 NA intron (NM_019106, intron 8 of 9) L2c|LINE|L2 -5846 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 336-20 chr15 44194653 44195028 + 1.5 NA promoter-TSS (NM_001286490) promoter-TSS (NM_001286490) -394 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 159.5-29 chr7 144602972 144603114 + 1.5 NA intron (NM_022445, intron 6 of 8) intron (NM_022445, intron 6 of 8) 135855 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 223-13 chr15 59953622 59953916 + 1.5 NA Intergenic Intergenic -50542 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 254-4 chr10 64729424 64729641 + 1.5 NA Intergenic Intergenic -95996 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 424.5-9 chr15 57788113 57788454 + 1.5 NA Intergenic L2b|LINE|L2 81569 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 361.5-2 chr1 245111504 245111966 + 1.5 NA intron (NM_001143943, intron 6 of 6) intron (NM_001143943, intron 6 of 6) -43250 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 448.5-16 chr4 88766107 88766538 + 1.5 NA intron (NM_001015045, intron 7 of 17) intron (NM_001015045, intron 7 of 17) 56533 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 316-14 chr19 28233397 28233675 + 1.5 NA Intergenic LTR39|LTR|ERV1 -373152 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 350-9 chr15 66387786 66388153 + 1.5 NA intron (NM_002755, intron 1 of 10) intron (NM_002755, intron 1 of 10) 1096 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 461.5-2 chr10 119914984 119915608 + 1.5 NA intron (NM_007190, intron 7 of 18) MIR|SINE|MIR 22566 NM_007190 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 299-20 chr2 170240423 170240760 + 1.5 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 62444 NM_138995 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 307.5-25 chr3 99579948 99580355 + 1.5 NA Intergenic Intergenic -58443 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 447.5-5 chr16 46515348 46515833 + 1.5 NA intron (NR_026556, intron 9 of 16) intron (NR_026556, intron 9 of 16) 53507 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 386-31 chr8 109874398 109874897 + 1.5 NA Intergenic Intergenic 101124 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 356.5-20 chr2 64733280 64733690 + 1.5 NA Intergenic Intergenic -79572 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 251-38 chr9 90142844 90143065 + 1.5 NA Intergenic Intergenic -101455 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 325-12 chr20 1568238 1568711 + 1.5 NA intron (NM_001330639, intron 2 of 3) intron (NM_001330639, intron 2 of 3) -10769 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 247-17 chr3 118328433 118328766 + 1.5 NA Intergenic L1MA9|LINE|L1 -313169 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 370-28 chr5 136026219 136026686 + 1.5 NA Intergenic MIRb|SINE|MIR -2536 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 269.5-37 chr4 32332526 32332884 + 1.5 NA Intergenic Intergenic -18333 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 224-17 chr21 26436907 26437086 + 1.5 NA intron (NR_135515, intron 1 of 3) MIRb|SINE|MIR 31053 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 267-39 chr4 172313791 172314138 + 1.5 NA intron (NM_001034845, intron 4 of 12) intron (NM_001034845, intron 4 of 12) 374953 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 413-3 chr1 125169919 125170306 + 1.5 NA Intergenic Intergenic 3651000 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 246.5-31 chr5 81960620 81960836 + 1.5 NA Intergenic Intergenic -11295 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 362-20 chr2 121934355 121934672 + 1.5 NA Intergenic AluJr|SINE|Alu 178862 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 429-23 chr3 4185080 4185495 + 1.5 NA Intergenic Intergenic -118017 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 195-4 chr10 113782764 113782978 + 1.5 NA 3' UTR (NM_001193435, exon 11 of 11) 3' UTR (NM_001193435, exon 11 of 11) -4817 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 394-2 chr1 168551751 168552166 + 1.5 NA Intergenic MIRb|SINE|MIR -7961 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 288-15 chr16 12964694 12964993 + 1.5 NA intron (NM_001145204, intron 2 of 4) MIRc|SINE|MIR 63245 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 232.5-13 chr12 82597013 82597168 + 1.5 NA Intergenic Intergenic -89816 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 292-13 chr18 8820710 8821167 + 1.5 NA intron (NM_015210, intron 13 of 16) intron (NM_015210, intron 13 of 16) 103557 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 272-39 chr7 155685478 155685659 + 1.5 NA intron (NM_053043, intron 5 of 17) L2c|LINE|L2 40907 NM_053043 155435 Hs.591815 NM_053043 ENSG00000184863 RBM33 PRR8 RNA binding motif protein 33 protein-coding 144-9 chr8 56898419 56898602 + 1.5 NA Intergenic MER89|LTR|ERV1 95357 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 187.5-12 chr2 126598786 126598946 + 1.5 NA Intergenic L1MB4|LINE|L1 -57069 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 336-30 chr2 125275218 125275459 + 1.5 NA Intergenic Intergenic 842647 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 189-4 chr13 108660042 108660247 + 1.5 NA intron (NM_001198950, intron 1 of 34) intron (NM_001198950, intron 1 of 34) 30533 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 225.5-19 chr2 46328072 46328292 + 1.5 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 30775 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 386.5-4 chr10 62259471 62259991 + 1.5 NA intron (NM_001282941, intron 2 of 4) AluJb|SINE|Alu 9113 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 209.5-4 chr10 13953347 13953649 + 1.5 NA intron (NM_018027, intron 2 of 24) MER44B|DNA|TcMar-Tigger 18398 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 788.5-2 chr13 45424521 45425145 + 1.5 NA Intergenic (TATAAATATA)n|Simple_repeat|Simple_repeat -6378 NM_001286806 253512 Hs.591230 NM_001010875 ENSG00000174032 SLC25A30 KMCP1 solute carrier family 25 member 30 protein-coding 358.5-14 chr2 78901716 78902001 + 1.5 NA Intergenic L1ME3B|LINE|L1 -123844 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 356.5-3 chr1 81263631 81263971 + 1.5 NA Intergenic Intergenic -42391 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 435-32 chr6 39680460 39680894 + 1.5 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 44731 NM_001289021 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 379-27 chr20 10612325 10612744 + 1.5 NA intron (NM_001009608, intron 6 of 7) intron (NM_001009608, intron 6 of 7) 37161 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 287-7 chr11 57888079 57888301 + 1.5 NA Intergenic MIR3|SINE|MIR 126388 NM_001085465 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 253-8 chr16 53969360 53969725 + 1.5 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -69851 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 240.5-27 chr7 121263095 121263333 + 1.5 NA intron (NM_024913, intron 18 of 22) intron (NM_024913, intron 18 of 22) -62153 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 190-18 chr9 4180529 4180667 + 1.5 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -28415 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 389-36 chr5 28576878 28577263 + 1.5 NA Intergenic L1PA16|LINE|L1 -289405 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 420-16 chr18 72804114 72804498 + 1.5 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 49076 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 137 chr12 100792506 100792695 + 1.5 NA Intergenic Intergenic -2176 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 676.5-3 chr10 32744314 32744877 + 1.5 NA intron (NM_001321115, intron 29 of 43) L1MC1|LINE|L1 156877 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 956-4 chr17 60956901 60957890 + 1.5 NA intron (NM_001330413, intron 14 of 25) intron (NM_001330413, intron 14 of 25) 279544 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 252.5-7 chr11 19919361 19919716 + 1.5 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -103018 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 433-11 chr17 44960652 44961069 + 1.5 NA intron (NM_006688, intron 1 of 1) intron (NM_006688, intron 1 of 1) 7443 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 214.5-4 chr10 114136659 114136867 + 1.5 NA intron (NM_001321829, intron 8 of 16) intron (NM_001321829, intron 8 of 16) 37416 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 229.5-9 chr14 61567193 61567504 + 1.5 NA intron (NR_110417, intron 1 of 3) L1MA5A|LINE|L1 2846 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 321-26 chr7 17336103 17336540 + 1.5 NA intron (NM_001621, intron 9 of 10) L1M5|LINE|L1 37669 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 207-12 chr2 44413598 44413737 + 1.5 NA intron (NM_024766, intron 3 of 10) AluSg|SINE|Alu 51720 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 207-19 chr3 108220993 108221161 + 1.5 NA intron (NM_018010, intron 1 of 10) intron (NM_018010, intron 1 of 10) 1347 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 464.5-16 chr3 31249676 31250078 + 1.5 NA Intergenic Intergenic -88090 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 374-32 chr5 145146919 145147197 + 1.5 NA Intergenic Intergenic 688284 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 183.5-23 chr4 107380413 107380569 + 1.5 NA Intergenic HERVI-int|LTR|ERV1 339743 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 259-16 chr22_KI270733v1_random 145243 145581 + 1.5 NA Intergenic Intergenic 15208 NR_146148 109864282 NR_146148 RNA28SN2 - RNA, 28S ribosomal N2 rRNA 200.5-21 chr20 4433826 4434084 + 1.5 NA Intergenic L1M5|LINE|L1 -184668 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 244.5-6 chr11 91938450 91938616 + 1.5 NA Intergenic Intergenic -286501 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 220.5-18 chr3 52784822 52784991 + 1.5 NA intron (NM_002215, intron 11 of 21) MIRc|SINE|MIR 4980 NM_001166436 3697 Hs.76716 NM_002215 ENSG00000055957 ITIH1 H1P|IATIH|IGHEP1|ITI-HC1|ITIH|SHAP inter-alpha-trypsin inhibitor heavy chain 1 protein-coding 298-29 chr8 73417913 73418282 + 1.5 NA Intergenic Intergenic -1977 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 219.5-36 chr7 25386292 25386539 + 1.5 NA Intergenic Intergenic -157929 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 174.5-32 chr7 80129613 80129873 + 1.5 NA Intergenic L2a|LINE|L2 -5088 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 207-3 chr10 87888996 87889162 + 1.5 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 25454 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 224.5-28 chr7 89370930 89371079 + 1.5 NA Intergenic Intergenic -575267 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 427-27 chr6 21917157 21917682 + 1.5 NA intron (NR_015410, intron 5 of 11) intron (NR_015410, intron 5 of 11) 229774 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 295.5-14 chr2 49428328 49428553 + 1.5 NA Intergenic Intergenic -273913 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 334.5-20 chr3 108863760 108864012 + 1.5 NA Intergenic MER61B|LTR|ERV1 41100 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 276-11 chr10 101260288 101260513 + 1.5 NA intron (NR_120621, intron 2 of 2) intron (NR_120621, intron 2 of 2) 3150 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 162-3 chr14 45592999 45593158 + 1.5 NA Intergenic L1PA8|LINE|L1 122524 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 413-37 chr7 6453359 6453813 + 1.5 NA Intergenic MER63C|DNA|hAT-Blackjack -5574 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 219 chr1 23074128 23074290 + 1.5 NA intron (NM_015013, intron 13 of 18) L1ME1|LINE|L1 29904 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 218-41 chr9 83811501 83811760 + 1.5 NA intron (NM_025211, intron 2 of 12) intron (NM_025211, intron 2 of 12) 6139 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 605.5-3 chr15 83176893 83177408 + 1.5 NA intron (NM_016073, intron 1 of 5) AluSz|SINE|Alu 30673 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 367-24 chr4 15168478 15168823 + 1.5 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) 166169 NM_001177381 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 202.5-9 chr13 28609499 28609769 + 1.5 NA Intergenic Intergenic -49496 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 194-23 chr7 70377307 70377474 + 1.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -754754 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 332-33 chr5 88944434 88944815 + 1.5 NA intron (NR_136220, intron 3 of 7) intron (NR_136220, intron 3 of 7) -40519 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 198-19 chr7 37911489 37911690 + 1.5 NA intron (NM_003014, intron 4 of 5) intron (NM_003014, intron 4 of 5) 5228 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 177.5-4 chr1 207834775 207834910 + 1.5 NA Intergenic Intergenic -12139 NR_135299 100128537 Hs.445414 NR_135298 MIR29B2CHG C1orf132 MIR29B2 and MIR29C host gene ncRNA 179.5-13 chr3 171013654 171013832 + 1.5 NA intron (NM_001278658, intron 2 of 9) intron (NM_001278658, intron 2 of 9) 12977 NM_000340 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 376.5-15 chr2 120111446 120111786 + 1.5 NA intron (NM_001330310, intron 16 of 24) L2a|LINE|L2 98539 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 216.5-8 chr10 119691835 119692052 + 1.5 NA Intergenic Intergenic -34104 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 196.5-21 chr20 990028 990290 + 1.5 NA intron (NM_001029871, intron 1 of 4) intron (NM_001029871, intron 1 of 4) 12152 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 348.5-25 chr7 30145641 30146121 + 1.5 NA intron (NM_152793, intron 1 of 2) intron (NM_152793, intron 1 of 2) 10895 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 263.5-15 chr20 57184412 57184735 + 1.5 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -29123 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 204.5-7 chr10 96440372 96440575 + 1.5 NA intron (NM_012465, intron 3 of 20) intron (NM_012465, intron 3 of 20) 73453 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 291-32 chr8 144131417 144131691 + 1.5 NA Intergenic Intergenic -6220 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 245-33 chr6 35685382 35685639 + 1.5 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) 3405 NM_001145776 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 273.5-13 chr2 10727126 10727418 + 1.5 NA intron (NM_001039362, intron 3 of 13) AluSx1|SINE|Alu 5642 NM_144583 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 170-17 chr5 165986033 165986280 + 1.5 NA Intergenic L1MB3|LINE|L1 940214 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 331.5-3 chr1 75567832 75568275 + 1.5 NA intron (NM_152697, intron 1 of 23) intron (NM_152697, intron 1 of 23) 43061 NM_001320287 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 382-13 chr14 87982980 87983399 + 1.5 NA intron (NM_000153, intron 5 of 16) AluSx3|SINE|Alu 9993 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 357.5-10 chr18 75398828 75399239 + 1.5 NA Intergenic Intergenic 28670 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 281-19 chr17 71871895 71872315 + 1.5 NA Intergenic Intergenic 153874 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 460.5-2 chr1 227900007 227900386 + 1.5 NA Intergenic Intergenic 41487 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 270.5-25 chr5 157099953 157100338 + 1.5 NA intron (NM_032782, intron 3 of 6) intron (NM_032782, intron 3 of 6) 8899 NM_032782 84868 Hs.710500 NM_032782 ENSG00000135077 HAVCR2 CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3 hepatitis A virus cellular receptor 2 protein-coding 610.5-5 chr15 51637716 51638349 + 1.5 NA Intergenic Intergenic -15261 NM_015263 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 297-36 chr9 27744698 27745009 + 1.5 NA Intergenic LTR41C|LTR|ERVL -170987 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 127-2 chr14 59841048 59841189 + 1.5 NA intron (NM_021136, intron 1 of 8) L1M4a1|LINE|L1 29658 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 324-34 chr5 44059831 44060267 + 1.5 NA Intergenic L1PA5|LINE|L1 -328683 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 337-16 chr2 133127117 133127365 + 1.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -138954 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 244.5-21 chr2 117379980 117380177 + 1.5 NA Intergenic Intergenic -434613 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 289 chr1 23172201 23172567 + 1.5 NA Intergenic AluJr|SINE|Alu -3526 NM_001142546 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 249.5-6 chr12 29503320 29503664 + 1.5 NA 3' UTR (NM_001193451, exon 18 of 18) 3' UTR (NM_001193451, exon 18 of 18) -3799 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 343.5-15 chr15 64624268 64624560 + 1.5 NA intron (NM_015042, intron 2 of 8) intron (NM_015042, intron 2 of 8) 78867 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 199-21 chr9 31438250 31438511 + 1.5 NA Intergenic Intergenic -56890 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 434-4 chr15 35928417 35928950 + 1.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 1827 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 254-23 chr3 8369538 8369811 + 1.5 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 131984 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 281-17 chr16 86701134 86701369 + 1.5 NA Intergenic Intergenic 20708 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 161-10 chr3 159157122 159157321 + 1.5 NA intron (NM_001197113, intron 1 of 10) Tigger19a|DNA|TcMar-Tigger 87902 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 229.5-23 chr3 38370241 38370506 + 1.5 NA intron (NR_146068, intron 7 of 16) MIR|SINE|MIR 23588 NM_001349178 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 513-20 chr3 18211032 18211448 + 1.5 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 214099 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 278-5 chr10 68346647 68346982 + 1.5 NA intron (NR_103476, intron 16 of 18) intron (NR_103476, intron 16 of 18) -13886 NM_001033083 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 372.5-16 chr3 99266538 99266978 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -365063 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 368.5-11 chr12 71599443 71599750 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR 64252 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 237-7 chr16 79382804 79382999 + 1.5 NA Intergenic Intergenic 217836 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 165-3 chr18 2220161 2220337 + 1.5 NA Intergenic Intergenic 351256 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 214.5-10 chr17 39954907 39955103 + 1.5 NA Intergenic Intergenic -7999 NM_178171 284110 Hs.448873 NM_178171 ENSG00000167914 GSDMA FKSG9|GSDM|GSDM1 gasdermin A protein-coding 182-3 chr10 35805610 35805818 + 1.5 NA Intergenic Intergenic 27412 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 402-6 chr10 111730880 111731392 + 1.5 NA Intergenic Intergenic 452629 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 467-13 chr19 27392304 27392793 + 1.5 NA Intergenic LTR12C|LTR|ERV1 -400883 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 336-40 chr4 45674590 45674825 + 1.5 NA Intergenic L1MA4|LINE|L1 449347 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 240-41 chr7 13732571 13732827 + 1.5 NA Intergenic Intergenic 253815 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 304 chr1 64814895 64815267 + 1.5 NA intron (NM_001366165, intron 11 of 11) MER58A|DNA|hAT-Charlie 70006 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 281-32 chr5 120409258 120409545 + 1.5 NA Intergenic Intergenic -54877 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 401-36 chr9 9457242 9457681 + 1.5 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -341931 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 363.5-5 chr11 82368032 82368326 + 1.5 NA intron (NR_120571, intron 1 of 7) L1PA17|LINE|L1 35734 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 270-20 chr4 81694723 81694931 + 1.5 NA Intergenic Intergenic -222920 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 139-2 chr10 107392688 107392781 + 1.5 NA Intergenic Intergenic -228028 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 303-11 chr14 69233995 69234254 + 1.5 NA intron (NM_001193360, intron 5 of 9) Helitron3Na_Mam|RC|Helitron -26034 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 321.5-27 chr6 37929086 37929452 + 1.5 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 109542 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 249-21 chr22 26984991 26985286 + 1.5 NA Intergenic Intergenic 75380 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 588-8 chr12 16663452 16664082 + 1.5 NA Intergenic AluSp|SINE|Alu -55553 NR_045012 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 125.5-6 chr2 55359198 55359281 + 1.5 NA intron (NM_001254943, intron 7 of 33) intron (NM_001254943, intron 7 of 33) 60617 NM_001365480 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 171-6 chr17 61584105 61584256 + 1.5 NA Intergenic Intergenic 7039 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 221.5-22 chr6 5191694 5191973 + 1.5 NA intron (NM_001164840, intron 2 of 2) L1MC4|LINE|L1 -43511 NR_037462 100500900 NR_037462 ENSG00000265083 MIR3691 mir-3691 microRNA 3691 ncRNA 280.5-2 chr1 117929065 117929346 + 1.5 NA promoter-TSS (NM_006784) promoter-TSS (NM_006784) 416 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 268-5 chr13 91651669 91651930 + 1.5 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 253178 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 397-19 chr2 38659824 38660315 + 1.5 NA Intergenic AluSz|SINE|Alu -6045 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 548.5-4 chr14 66719370 66720103 + 1.5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 212329 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 328.5-29 chr3 85633709 85634039 + 1.5 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -92608 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 226.5-9 chr16 67798809 67799070 + 1.5 NA intron (NM_001320238, intron 1 of 12) AluSz|SINE|Alu 7621 NM_020850 57610 Hs.368569 NM_020850 ENSG00000141084 RANBP10 - RAN binding protein 10 protein-coding 454-30 chr7 95508143 95508453 + 1.5 NA intron (NM_145872, intron 2 of 2) L2|LINE|L2 22355 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 310.5-7 chr10 75323488 75323984 + 1.5 NA intron (NR_038226, intron 2 of 3) AluSq2|SINE|Alu 27353 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 287-12 chr16 78279580 78279896 + 1.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 180084 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 573-11 chr20 4638336 4639054 + 1.5 NA Intergenic Intergenic -47761 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 161-3 chr1 177485670 177485875 + 1.5 NA Intergenic Intergenic 134186 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 215-24 chr4 63092770 63093093 + 1.5 NA Intergenic Intergenic -931166 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 262-23 chr3 184555036 184555313 + 1.5 NA intron (NR_046593, intron 1 of 1) AluSq2|SINE|Alu 1744 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 631-11 chr3 111163692 111164362 + 1.5 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 92211 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 384.5-16 chr20 712523 712981 + 1.5 NA Intergenic AluSg|SINE|Alu -36950 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 325.5-9 chr14 60633185 60633515 + 1.5 NA Intergenic Intergenic -5866 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 371 chr1 21239028 21239348 + 1.5 NA intron (NM_001113347, intron 8 of 16) MER91A|DNA|hAT-Tip100 40427 NM_001113347 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 407-23 chr3 16039981 16040341 + 1.5 NA Intergenic L1PA15|LINE|L1 -134519 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 283-24 chr2 179486719 179486926 + 1.5 NA intron (NR_148056, intron 5 of 9) AluJb|SINE|Alu 75766 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 348-3 chr1 173001375 173001715 + 1.5 NA Intergenic L1M1|LINE|L1 49418 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 373-8 chr11 44563257 44563553 + 1.5 NA Intergenic LTR32|LTR|ERVL -2258 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 245-10 chr12 62982133 62982427 + 1.5 NA Intergenic Intergenic -47130 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 129.5-3 chr1 119813914 119814037 + 1.5 NA Intergenic L1MEi|LINE|L1 -2515 NM_001159353 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 228.5-18 chr2 202789700 202789892 + 1.5 NA intron (NM_001288623, intron 10 of 12) LTR54|LTR|ERV1 39438 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 157-6 chr2 46043070 46043218 + 1.5 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -254263 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 191-7 chr2 134703166 134703332 + 1.5 NA intron (NM_030923, intron 2 of 7) HAL1|LINE|L1 15751 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 281.5-31 chr5 115947495 115947790 + 1.5 NA Intergenic Intergenic -8929 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 192-16 chr21 22798396 22798624 + 1.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -280774 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 148-8 chr8 8933467 8933572 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X -39889 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 271-8 chr14 69647467 69647712 + 1.5 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 35993 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 456-22 chr4 4824551 4825061 + 1.5 NA Intergenic L1MB3|LINE|L1 -19631 NR_125765 103695434 Hs.550830 NR_125765 ENSG00000273396 LINC01396 - long intergenic non-protein coding RNA 1396 ncRNA 347-30 chr9 101536027 101536563 + 1.5 NA intron (NM_019592, intron 2 of 19) intron (NM_019592, intron 2 of 19) 2442 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 171.5-4 chr1 220484691 220484880 + 1.5 NA Intergenic Intergenic -43351 NM_001286129 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 308.5-17 chr2 24995385 24995683 + 1.5 NA intron (NR_034113, intron 1 of 2) AluSz|SINE|Alu 23422 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 329-5 chr11 67010389 67010608 + 1.5 NA Intergenic Intergenic -12295 NM_001177880 91683 Hs.287636 NM_177963 ENSG00000173227 SYT12 SYT11|sytXII synaptotagmin 12 protein-coding 214.5-3 chr10 62694122 62694374 + 1.5 NA Intergenic Intergenic -110472 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 206.5-2 chr1 119211093 119211244 + 1.5 NA intron (NR_125975, intron 4 of 6) MLT1N2|LTR|ERVL-MaLR -70496 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 126.5-7 chr2 177588286 177588414 + 1.5 NA Intergenic Intergenic 30392 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 164.5-8 chr13 74900412 74900524 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 339913 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 187-20 chr3 188308127 188308402 + 1.5 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 82859 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 171-4 chr15 33814201 33814435 + 1.5 NA intron (NM_001243996, intron 73 of 102) intron (NM_001243996, intron 73 of 102) -154179 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 476-28 chr5 18354224 18354634 + 1.5 NA Intergenic MLT2B1|LTR|ERVL 547155 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 369-7 chr10 80914479 80914728 + 1.5 NA Intergenic Intergenic 264806 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 488.5-8 chr3 70675549 70675928 + 1.5 NA Intergenic L1PA5|LINE|L1 -363100 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 318.5-35 chr9 107284078 107284514 + 1.5 NA promoter-TSS (NM_001244713) promoter-TSS (NM_001244713) 243 NM_001244724 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 283.5-26 chr3 83911803 83912122 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 957613 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 312.5-16 chr2 188433398 188433640 + 1.5 NA intron (NM_016315, intron 2 of 11) LOR1-int|LTR|ERV1 136027 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 400-30 chr9 32701388 32701718 + 1.5 NA Intergenic Intergenic -65884 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 187-9 chr17 71526707 71526906 + 1.5 NA Intergenic Intergenic -324627 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 183.5-6 chr11 74069026 74069148 + 1.5 NA intron (NM_001286577, intron 24 of 32) AluSz|SINE|Alu -59850 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 168.5-28 chr7 2597004 2597238 + 1.5 NA intron (NM_001287501, intron 14 of 19) MER74A|LTR|ERVL -34865 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 289-18 chr15 74293815 74294063 + 1.5 NA intron (NM_025055, intron 10 of 18) intron (NM_025055, intron 10 of 18) -24620 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 252.5-26 chr8 31369144 31369359 + 1.5 NA Intergenic L1ME2|LINE|L1 -270501 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 174.5-24 chr3 128390156 128390293 + 1.5 NA intron (NM_021937, intron 6 of 6) intron (NM_021937, intron 6 of 6) -73370 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 244.5-34 chr4 144935063 144935265 + 1.5 NA Intergenic L1MA3|LINE|L1 162218 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 396.5-3 chr1 82386000 82386468 + 1.5 NA Intergenic L2c|LINE|L2 -516949 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 288-34 chr5 160392796 160393153 + 1.5 NA TTS (NM_022090) TTS (NM_022090) 7080 NM_022090 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 283.5-25 chr3 68580371 68580607 + 1.5 NA Intergenic Intergenic 79852 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 166-8 chr22 45174570 45174764 + 1.5 NA intron (NM_153645, intron 4 of 8) intron (NM_153645, intron 4 of 8) 9996 NM_153645 10762 Hs.475103 NM_007172 ENSG00000093000 NUP50 NPAP60|NPAP60L nucleoporin 50 protein-coding 508.5-14 chr3 44204010 44204670 + 1.5 NA Intergenic Intergenic -37546 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 227.5-11 chr2 215388969 215389299 + 1.5 NA intron (NM_212482, intron 26 of 45) AluSg|SINE|Alu 46934 NM_001365518 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 524 chr1 40010621 40011243 + 1.5 NA Intergenic AluJb|SINE|Alu -29133 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 241-15 chr4 37059263 37059577 + 1.5 NA Intergenic Intergenic 57641 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 502.5-2 chr1 58878530 58879161 + 1.5 NA intron (NR_108106, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 93694 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 276.5-21 chr2 98134458 98134662 + 1.5 NA intron (NR_144297, intron 7 of 18) intron (NR_144297, intron 7 of 18) -14973 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 264.5-25 chr4 26039096 26039380 + 1.5 NA Intergenic L2a|LINE|L2 125046 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 151-13 chr6 132122900 132123038 + 1.5 NA Intergenic Intergenic -7706 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 263.5-8 chr15 41018793 41019018 + 1.5 NA intron (NM_017553, intron 26 of 35) intron (NM_017553, intron 26 of 35) 65434 NM_001142776 79094 Hs.155569 NM_024111 ENSG00000128965 CHAC1 - ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding 357-37 chr6 141471073 141471388 + 1.5 NA Intergenic LTR25-int|LTR|ERV1 617569 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 116.5-6 chr14 68130051 68130209 + 1.5 NA intron (NM_133509, intron 7 of 10) MLT1E3|LTR|ERVL-MaLR 306538 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 257-16 chr16 56798165 56798567 + 1.5 NA intron (NM_001242796, intron 1 of 19) intron (NM_001242796, intron 1 of 19) 14910 NM_001242796 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 136.5-2 chr10 19358001 19358176 + 1.5 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 309287 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 198.5-2 chr1 55876282 55876439 + 1.5 NA Intergenic MLT2B4|LTR|ERVL 68603 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 164.5-19 chr3 12613734 12613896 + 1.5 NA intron (NR_148942, intron 2 of 16) intron (NR_148942, intron 2 of 16) 49693 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 207-25 chr6 56220888 56221102 + 1.5 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 26585 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 215-26 chr5 9394953 9395168 + 1.5 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -116273 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 341 chr1 204635155 204635428 + 1.5 NA intron (NM_201630, intron 1 of 1) MIR3|SINE|MIR 50447 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 134.5-23 chr8 122931898 122932050 + 1.5 NA intron (NM_001362797, intron 3 of 4) L2|LINE|L2 93798 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 158.5-15 chr22 28128869 28129035 + 1.5 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -208340 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 551.5-10 chr8 40971555 40972079 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -73991 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 583-4 chr14 72577943 72578547 + 1.5 NA Intergenic Intergenic 61425 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 277.5-20 chr21 15072883 15073171 + 1.5 NA Intergenic Intergenic -8027 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 387-29 chr6 10065447 10065762 + 1.5 NA Intergenic Intergenic -338898 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 182.5-30 chr8 140513170 140513302 + 1.5 NA intron (NR_040712, intron 1 of 2) intron (NR_040712, intron 1 of 2) 1240 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 236.5-36 chr7 83561354 83561602 + 1.5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 79953 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 186-31 chrX 76209341 76209480 + 1.5 NA Intergenic Intergenic 36348 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 294-15 chr15 88759711 88760033 + 1.5 NA Intergenic Intergenic -43564 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 193-3 chr11 68104395 68104596 + 1.5 NA intron (NM_001277, intron 1 of 11) AluSx1|SINE|Alu 16893 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 463.5-8 chr18 76010659 76011062 + 1.5 NA Intergenic Intergenic -112138 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 357-12 chr14 50396526 50396969 + 1.5 NA 5' UTR (NM_001367065, exon 1 of 9) 5' UTR (NM_001367065, exon 1 of 9) 134 NM_004196 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 136-3 chr11 42833364 42833515 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 435930 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 491-25 chr6 146205299 146205796 + 1.5 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 176349 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 162-7 chr2 33344169 33344348 + 1.5 NA intron (NM_206943, intron 25 of 33) intron (NM_206943, intron 25 of 33) -74258 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 231-7 chr14 63443590 63443867 + 1.5 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 64510 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 390.5-6 chr14 50827009 50827454 + 1.5 NA intron (NM_016350, intron 2 of 28) intron (NM_016350, intron 2 of 28) 3890 NM_182946 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 478-29 chr7 112358818 112359379 + 1.5 NA Intergenic Intergenic -64046 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 165 chr15 26264665 26264859 + 1.5 NA Intergenic Intergenic 148949 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 179.5-4 chr12 42032908 42033100 + 1.5 NA Intergenic Intergenic 111870 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 282.5-7 chr10 114845169 114845437 + 1.5 NA intron (NM_001135051, intron 7 of 16) intron (NM_001135051, intron 7 of 16) 23523 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 153-7 chr18 56667988 56668092 + 1.5 NA intron (NM_015285, intron 1 of 27) L2b|LINE|L2 16655 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 550-5 chr11 101919343 101920024 + 1.5 NA intron (NM_001363543, intron 1 of 11) intron (NM_001363543, intron 1 of 11) -3161 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 209-15 chr2 155475610 155475780 + 1.5 NA Intergenic L1M3|LINE|L1 777000 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 253.5-19 chr2 235932458 235932770 + 1.5 NA intron (NM_001037131, intron 12 of 17) intron (NM_001037131, intron 12 of 17) 235772 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 173.5-10 chr14 99933064 99933261 + 1.5 NA intron (NM_004434, intron 17 of 21) intron (NM_004434, intron 17 of 21) -38260 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 376-13 chr17 62963776 62964173 + 1.5 NA Intergenic AluSz6|SINE|Alu -2261 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 266-3 chr10 19246929 19247188 + 1.5 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 198257 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 388-27 chr5 18073129 18073504 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 266042 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 319.5-29 chr7 71160324 71160750 + 1.5 NA intron (NM_022479, intron 1 of 10) AluSp|SINE|Alu 28393 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 392-6 chr10 73279083 73279593 + 1.5 NA intron (NM_001367801, intron 20 of 27) AluY|SINE|Alu 26597 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 493-2 chr12 1894845 1895311 + 1.5 NA intron (NM_172364, intron 6 of 37).2 L1MA4A|LINE|L1 23574 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 439.5-29 chr8 33276127 33276634 + 1.5 NA Intergenic Intergenic 196766 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 330-18 chr17 46930786 46931074 + 1.5 NA intron (NM_001353116, intron 2 of 5) intron (NM_001353116, intron 2 of 5) 7770 NM_054022 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 150-8 chr9 32672136 32672289 + 1.5 NA Intergenic MIR3|SINE|MIR -36543 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 349-33 chr6 70548701 70549029 + 1.5 NA intron (NM_020819, intron 19 of 20) intron (NM_020819, intron 19 of 20) -18065 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 238.5-32 chr5 27700181 27700445 + 1.5 NA Intergenic L2c|LINE|L2 228021 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 205.5-26 chr6 53959688 53959942 + 1.5 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 29833 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 216-17 chr21 33736842 33737104 + 1.5 NA intron (NM_001331012, intron 5 of 28) AluJo|SINE|Alu 94472 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 407-20 chr2 213388945 213389481 + 1.5 NA intron (NR_047660, intron 8 of 14) L1MB3|LINE|L1 104749 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 148.5-14 chr2 55829809 55829957 + 1.5 NA Intergenic L1PA15|LINE|L1 93899 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 196-10 chr22 47918549 47918679 + 1.5 NA Intergenic Intergenic 286940 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 228.5-19 chr21 34981206 34981416 + 1.5 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 58115 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 405-15 chr2 212282371 212282800 + 1.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 143775 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 325-21 chr5 43902164 43902505 + 1.5 NA Intergenic L2a|LINE|L2 -299104 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 207-17 chr22 25006488 25006680 + 1.5 NA Intergenic L2b|LINE|L2 -21390 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 156-7 chr11 105284839 105285048 + 1.5 NA Intergenic L1MEc|LINE|L1 -145174 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 314.5 chr1 143194987 143195301 + 1.5 NA Intergenic Intergenic 227448 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 337-13 chr18 21477697 21477996 + 1.5 NA intron (NM_001142966, intron 17 of 32) intron (NM_001142966, intron 17 of 32) 122858 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 492.5-15 chr5 142547110 142547682 + 1.5 NA Intergenic Intergenic 73938 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 266.5-14 chr2 30662878 30663158 + 1.5 NA Intergenic Intergenic 144428 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 427-24 chr5 7665316 7665665 + 1.5 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 185643 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 183-2 chr1 165074463 165074668 + 1.5 NA Intergenic Intergenic 281676 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 679-2 chr10 22016351 22017234 + 1.5 NA Intergenic Charlie8|DNA|hAT-Charlie -13062 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 239.5-16 chr4 147127470 147127669 + 1.5 NA Intergenic MER31B|LTR|ERV1 -181683 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 228-19 chr9 98002453 98002814 + 1.5 NA intron (NM_006401, intron 3 of 6) intron (NM_006401, intron 3 of 6) 19292 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 210.5-10 chr16 60611846 60612071 + 1.5 NA Intergenic Intergenic -252165 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 258-12 chr2 98548685 98549091 + 1.5 NA intron (NM_001351428, intron 13 of 24) intron (NM_001351428, intron 13 of 24) 59624 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 200.5-12 chr14 23514456 23514649 + 1.5 NA intron (NR_046052, intron 2 of 2) intron (NR_046052, intron 2 of 2) 1742 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 343-6 chr11 19788144 19788425 + 1.5 NA intron (NM_182964, intron 1 of 37) MER20|DNA|hAT-Charlie -28201 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 289-2 chr1 102990504 102990912 + 1.5 NA intron (NM_001854, intron 28 of 66) L2c|LINE|L2 117788 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 381.5-16 chr3 190792147 190792638 + 1.5 NA Intergenic GA-rich|Low_complexity|Low_complexity 70302 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 334.5 chr1 46105566 46106095 + 1.5 NA intron (NM_001303427, intron 1 of 9) AluSq|SINE|Alu 24843 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 326.5-40 chr9 128517597 128517949 + 1.5 NA intron (NM_001499, intron 3 of 13) HAL1ME|LINE|L1 13081 NM_001499 2733 Hs.522418 NM_001499 ENSG00000119392 GLE1 CAAHC|CAAHD|GLE1L|LCCS|LCCS1|hGLE1 GLE1 RNA export mediator protein-coding 251-19 chr2 210041233 210041507 + 1.5 NA intron (NM_001307976, intron 7 of 13) intron (NM_001307976, intron 7 of 13) 11448 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 195.5-31 chr7 43236222 43236396 + 1.5 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 85414 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 278-23 chr6 69603942 69604237 + 1.5 NA Intergenic Intergenic 192377 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 199.5-19 chr2 127141425 127141588 + 1.5 NA Intergenic MIRb|SINE|MIR -34352 NM_139351 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 314.5-2 chr1 152184749 152185006 + 1.5 NA Intergenic Intergenic -25649 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 178-7 chr11 47974221 47974404 + 1.5 NA Intergenic Intergenic -6247 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 486-39 chr8 117212137 117212602 + 1.5 NA Intergenic L1PA12|LINE|L1 77374 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 356-33 chr6 33713549 33714020 + 1.5 NA Intergenic Intergenic -2084 NM_032340 84300 Hs.732448 NM_032340 ENSG00000137288 UQCC2 C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding 212-26 chr8 14236851 14237028 + 1.5 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 607249 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 405.5-10 chr20 2353526 2353960 + 1.5 NA Intergenic L1MB3|LINE|L1 -27158 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 376-24 chr5 109023261 109023704 + 1.5 NA intron (NR_146155, intron 13 of 19) L2a|LINE|L2 98876 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 460-17 chr3 127262910 127263514 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 24834 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 233-7 chr11 56583381 56583536 + 1.5 NA Intergenic L1ME2|LINE|L1 -5737 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 401.5-6 chr10 55710783 55711120 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -83009 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 242.5-8 chr16 66999379 66999701 + 1.5 NA promoter-TSS (NM_001190201) promoter-TSS (NM_001190201) -999 NM_001190201 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 244-18 chr20 16015341 16015656 + 1.5 NA intron (NM_001351663, intron 15 of 17) L1M5|LINE|L1 -29616 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 261.5-32 chr8 51311035 51311295 + 1.5 NA Intergenic L1M3|LINE|L1 498280 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 259.5 chr1 23912547 23912927 + 1.5 NA intron (NM_001841, intron 1 of 1) intron (NM_001841, intron 1 of 1) 625 NM_001841 1269 Hs.73037 NM_001841 ENSG00000188822 CNR2 CB-2|CB2|CX5 cannabinoid receptor 2 protein-coding 369-4 chr10 22208615 22208993 + 1.5 NA TTS (NM_001199938) TTS (NM_001199938) 1179 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 293-13 chr17 34271646 34271989 + 1.5 NA 3' UTR (NM_006273, exon 3 of 3) 3' UTR (NM_006273, exon 3 of 3) 1596 NM_006273 6354 Hs.251526 NM_006273 ENSG00000108688 CCL7 FIC|MARC|MCP-3|MCP3|NC28|SCYA6|SCYA7 C-C motif chemokine ligand 7 protein-coding 311.5-2 chr1 22056825 22057201 + 1.5 NA intron (NM_044472, intron 1 of 5) intron (NM_044472, intron 1 of 5) 4304 NM_001791 998 Hs.467637 NM_001791 ENSG00000070831 CDC42 CDC42Hs|G25K|TKS cell division cycle 42 protein-coding 288-41 chr8 138481312 138481633 + 1.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 15789 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 144.5-19 chr5 167176796 167177012 + 1.5 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -8503 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 284.5-35 chr5 60074365 60074554 + 1.5 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -180733 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 267-51 chrX 41708176 41708492 + 1.5 NA intron (NM_003688, intron 5 of 26) intron (NM_003688, intron 5 of 26) -15847 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 428-22 chr4 31326340 31326644 + 1.5 NA Intergenic Intergenic 155348 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 347-4 chr12 51683502 51683814 + 1.5 NA intron (NM_001369788, intron 2 of 25) L2a|LINE|L2 92422 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 332-13 chr17 76338659 76339105 + 1.5 NA intron (NM_001330503, intron 2 of 8) AluSq|SINE|Alu 15034 NM_002766 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 469-18 chr21 30127294 30127805 + 1.5 NA Intergenic L1M5|LINE|L1 39256 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 284 chr1 71178304 71178574 + 1.5 NA intron (NR_046217, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 97115 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 332-15 chr2 18845528 18845808 + 1.5 NA Intergenic Intergenic 181303 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 170-3 chr1 231855052 231855243 + 1.5 NA 3' UTR (NM_001164539, exon 10 of 10) 3' UTR (NM_001164539, exon 10 of 10) -36630 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 188.5-3 chr12 18582694 18582819 + 1.5 NA intron (NM_001288774, intron 29 of 32) L1PREC2|LINE|L1 154753 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 232-20 chr20 52069334 52069582 + 1.5 NA Intergenic L1ME4a|LINE|L1 36026 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 399-3 chr1 80883740 80884129 + 1.5 NA Intergenic Intergenic 242647 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 122.5-20 chr7 33444279 33444360 + 1.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 314755 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 342.5-23 chr21 31911980 31912302 + 1.5 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 39121 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 276.5-20 chr2 74551301 74551588 + 1.5 NA intron (NM_032603, intron 2 of 13) L3|LINE|CR1 -1918 NM_001289165 84695 Hs.469045 NM_032603 ENSG00000115318 LOXL3 LOXL lysyl oxidase like 3 protein-coding 366.5-34 chr9 27855859 27856334 + 1.5 NA Intergenic MER74A|LTR|ERVL -282230 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 347.5-11 chr17 59360916 59361206 + 1.5 NA intron (NM_001005404, intron 2 of 4) AluSz|SINE|Alu -5022 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 186.5-10 chr15 74573913 74574161 + 1.5 NA intron (NM_001307939, intron 4 of 8) AluSz|SINE|Alu 32817 NM_006465 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 457.5 chr1 17236559 17237063 + 1.5 NA intron (NM_013358, intron 11 of 15).2 GA-rich|Low_complexity|Low_complexity -12287 NM_016233 51702 Hs.149195 NM_016233 ENSG00000142619 PADI3 PAD3|PDI3|UHS1 peptidyl arginine deiminase 3 protein-coding 148.5-22 chr5 108785679 108785833 + 1.5 NA intron (NM_001308038, intron 3 of 7) L1MDb|LINE|L1 36808 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 513.5-18 chr8 68219428 68219948 + 1.5 NA intron (NM_024870, intron 38 of 39) intron (NM_024870, intron 38 of 39) -110685 NM_001349477 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 427.5-6 chr12 11697917 11698269 + 1.5 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 48239 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 343-20 chr3 46337844 46338151 + 1.5 NA Intergenic L1MB7|LINE|L1 -15747 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 328.5-12 chr15 52581909 52582244 + 1.5 NA non-coding (NR_104457, exon 13 of 13) non-coding (NR_104457, exon 13 of 13) -12630 NM_001306191 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 248-24 chr8 127654149 127654448 + 1.5 NA Intergenic Intergenic 79669 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 217-4 chr12 39236749 39236893 + 1.5 NA Intergenic Intergenic 206299 NM_001173464 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 273.5-15 chr2 80247173 80247533 + 1.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 57399 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 427-7 chr1 160013448 160014146 + 1.5 NA Intergenic L1MA4A|LINE|L1 18193 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 366-7 chr15 80831331 80831746 + 1.5 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 10535 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 223-3 chr10 6855022 6855302 + 1.5 NA Intergenic L1MB1|LINE|L1 75564 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 157.5-2 chr10 6870503 6870715 + 1.5 NA Intergenic Intergenic 91011 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 530.5-17 chr9 134944057 134944484 + 1.5 NA Intergenic Intergenic -26358 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 344-24 chr20 46628426 46628715 + 1.5 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) 22889 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 269.5-41 chr4 121984013 121984351 + 1.5 NA Intergenic L1MEg|LINE|L1 -32122 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 151-10 chr3 146376864 146376995 + 1.5 NA Intergenic Intergenic 92372 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 281-24 chr20 31053584 31053797 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203974 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 513-10 chr15 58165605 58166068 + 1.5 NA intron (NM_020980, intron 1 of 5) L2b|LINE|L2 27455 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 229-14 chr16 86933949 86934101 + 1.5 NA Intergenic AluJr|SINE|Alu -123759 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 370.5 chr1 26456790 26457173 + 1.5 NA intron (NM_205861, intron 6 of 8) L1ME3G|LINE|L1 10556 NR_125952 101928324 Hs.663256 NR_125952 LOC101928324 - uncharacterized LOC101928324 ncRNA 340.5-3 chr1 227562190 227562446 + 1.5 NA Intergenic Intergenic -1238 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 265-32 chr6 72744952 72745300 + 1.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 114631 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 669-3 chr11 36350902 36351554 + 1.5 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) -24757 NM_024841 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 256.5-9 chr15 39827972 39828276 + 1.5 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) 1152 NM_001271855 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 554-22 chr5 131690646 131691454 + 1.5 NA intron (NM_133372, intron 11 of 17) L1MC2|LINE|L1 -55821 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 199.5-15 chr19 41262485 41262654 + 1.5 NA promoter-TSS (NM_144732) promoter-TSS (NM_144732) 12 NM_144732 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 225-13 chr14 102406527 102406778 + 1.5 NA intron (NM_014844, intron 2 of 19) AluJb|SINE|Alu 43711 NM_001172631 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 406-19 chr5 82922048 82922531 + 1.5 NA Intergenic Intergenic -62453 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 158.5-12 chr2 37263265 37263413 + 1.5 NA TTS (NR_146409) TTS (NR_146409) 31681 NR_146404 55471 Hs.433466 NM_018607 ENSG00000003509 NDUFAF7 C2orf56|MidA|PRO1853 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding 232.5-18 chr15 86097752 86098021 + 1.5 NA intron (NR_120368, intron 3 of 5) L1MA4A|LINE|L1 18266 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 122.5-17 chr3 146505301 146505382 + 1.5 NA Intergenic Intergenic -9350 NM_020359 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 498-5 chr1 176134170 176134824 + 1.5 NA intron (NM_022457, intron 8 of 19) intron (NM_022457, intron 8 of 19) 72747 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 211-2 chr1 226823409 226823549 + 1.5 NA Intergenic Intergenic -47093 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 201-18 chr6 40203124 40203433 + 1.5 NA Intergenic L1MA9|LINE|L1 152728 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 326.5-39 chr8 125521055 125521340 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 88988 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 242-8 chr13 66544462 66544795 + 1.5 NA intron (NM_001318373, intron 3 of 3) MER66C|LTR|ERV1 -280541 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 513.5-13 chr20 59392445 59392839 + 1.5 NA Intergenic UCON41|Unknown|Unknown 92031 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 293.5-16 chr2 10603770 10604163 + 1.5 NA intron (NR_048552, intron 13 of 19) MER1B|DNA|hAT-Charlie 86009 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 304-17 chr2 10810709 10811058 + 1.5 NA intron (NM_001282707, intron 1 of 13) intron (NM_001282707, intron 1 of 13) 1902 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 338-26 chr3 145815124 145815670 + 1.5 NA Intergenic Intergenic 253788 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 227.5-14 chr3 88535105 88535256 + 1.5 NA Intergenic Intergenic 196724 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 207.5-4 chr1 234718405 234718575 + 1.5 NA Intergenic CR1-12_AMi|LINE|CR1 -5552 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 349-37 chr8 113382842 113383262 + 1.5 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -5900 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 197-7 chr10 65626537 65626688 + 1.5 NA intron (NR_120647, intron 3 of 5) Charlie1a|DNA|hAT-Charlie 55187 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 570-16 chr21 30628362 30629088 + 1.5 NA Intergenic Intergenic -6481 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 193-2 chr10 79190047 79190297 + 1.5 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 121206 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 342.5-29 chr7 36286480 36286855 + 1.5 NA intron (NM_030636, intron 5 of 7) intron (NM_030636, intron 5 of 7) 80573 NM_001300956 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 307.5-33 chr6 155824540 155824790 + 1.5 NA Intergenic L1M5|LINE|L1 -122132 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 466.5-11 chr17 57174377 57174904 + 1.5 NA Intergenic Intergenic 79151 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 162.5-11 chr2 241323572 241323696 + 1.5 NA intron (NM_001349291, intron 2 of 13) intron (NM_001349291, intron 2 of 13) 7469 NM_001349290 4735 Hs.721234 NM_004404 ENSG00000168385 SEPTIN2 DIFF6|NEDD-5|NEDD5|Pnutl3|SEPT2|hNedd5 septin 2 protein-coding 248-21 chr7 1102191 1102459 + 1.5 NA intron (NM_001134395, intron 2 of 4) intron (NM_001134395, intron 2 of 4) 14212 NM_001098201 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 337.5-22 chr3 10110202 10110543 + 1.5 NA Intergenic AluSx1|SINE|Alu -2117 NM_001164839 115795 Hs.190413 NM_173472 ENSG00000163705 FANCD2OS C3orf24 FANCD2 opposite strand protein-coding 239.5-25 chr8 134431479 134431700 + 1.5 NA Intergenic Intergenic -166482 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 184.5-17 chr4 97349742 97350021 + 1.5 NA Intergenic Intergenic -17045 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 239.5-21 chr7 41436417 41436663 + 1.5 NA Intergenic Intergenic -257379 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 252.5-9 chr12 129915038 129915217 + 1.5 NA Intergenic AluSz6|SINE|Alu -11102 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 273-16 chr18 76954292 76954525 + 1.5 NA intron (NM_001306089, intron 27 of 30) intron (NM_001306089, intron 27 of 30) 62647 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 296.5-11 chr16 83854433 83854839 + 1.5 NA Intergenic LTR9D|LTR|ERV1 -44479 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 222.5 chr10 89668254 89668499 + 1.5 NA Intergenic Intergenic -22804 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 248-12 chr2 105923496 105923667 + 1.5 NA Intergenic Intergenic 71734 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 478-26 chr6 82978084 82978449 + 1.5 NA intron (NR_146807, intron 9 of 10) intron (NR_146807, intron 9 of 10) 87575 NR_146807 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 148.5-12 chr2 4799468 4799569 + 1.5 NA Intergenic L1ME1|LINE|L1 -143296 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 139.5-23 chr8 139399390 139399538 + 1.5 NA Intergenic L2a|LINE|L2 303659 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 365.5-5 chr11 81482928 81483355 + 1.5 NA Intergenic L2a|LINE|L2 407695 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 294-11 chr11 42768858 42769156 + 1.5 NA Intergenic Intergenic 500362 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 175.5-14 chr2 123524334 123524533 + 1.5 NA Intergenic Intergenic -450952 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 262.5-28 chr8 137768487 137768804 + 1.5 NA Intergenic Intergenic 314900 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 176-6 chr2 109587329 109587559 + 1.5 NA intron (NM_001321500, intron 1 of 8) L1MEc|LINE|L1 26223 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 345-5 chr10 64285568 64285947 + 1.5 NA Intergenic Intergenic -539771 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 248-3 chr11 18851992 18852219 + 1.5 NA Intergenic L1M1|LINE|L1 -59384 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 280-28 chr4 65381914 65382217 + 1.5 NA intron (NM_001281767, intron 8 of 16) intron (NM_001281767, intron 8 of 16) 287423 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 200.5-27 chr6 150352579 150352843 + 1.5 NA Intergenic LTR8B|LTR|ERV1 -16301 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 551-27 chr6 119859462 119860074 + 1.5 NA Intergenic Intergenic -155411 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 144-8 chr7 133411120 133411305 + 1.5 NA intron (NM_021807, intron 7 of 17) MamRTE1|LINE|RTE-BovB 120331 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 266-37 chr5 83718498 83718799 + 1.5 NA intron (NM_001884, intron 1 of 4) intron (NM_001884, intron 1 of 4) 2207 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 210-17 chr2 158384973 158385179 + 1.5 NA intron (NM_138803, intron 1 of 13) MLT1E3|LTR|ERVL-MaLR 71677 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 358-25 chr19 38109139 38109658 + 1.5 NA intron (NM_015073, intron 7 of 21) THE1B|LTR|ERVL-MaLR -53698 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 161-15 chr6 100237530 100237655 + 1.5 NA Intergenic Intergenic 226083 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 342-16 chr2 22826151 22826466 + 1.5 NA Intergenic Intergenic 289829 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 239-8 chr12 94669327 94669616 + 1.5 NA Intergenic AluSx1|SINE|Alu -18914 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 242.5-19 chr3 56817103 56817308 + 1.5 NA intron (NM_001128615, intron 4 of 12) MIRb|SINE|MIR -15256 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 341-3 chr10 95888965 95889252 + 1.5 NA intron (NR_038444, intron 2 of 5) intron (NR_038444, intron 2 of 5) -18857 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 473.5-11 chr3 197687174 197687724 + 1.5 NA intron (NM_001145642, intron 12 of 20) LTR41|LTR|ERVL -12873 NR_030627 100126321 NR_030627 ENSG00000284146 MIR922 MIRN922|hsa-mir-922 microRNA 922 ncRNA 200-22 chr9 24741709 24741849 + 1.5 NA Intergenic Intergenic -195882 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 606-7 chr5 32903361 32903902 + 1.5 NA Intergenic L1ME3|LINE|L1 -43812 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 486.5-2 chr11 28692637 28693113 + 1.5 NA Intergenic Intergenic -215327 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 197.5-39 chr8 118186954 118187198 + 1.5 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -75257 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 209.5-3 chr1 219393555 219393784 + 1.5 NA Intergenic MER57A-int|LTR|ERV1 163655 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 373.5-19 chr5 29732109 29732365 + 1.5 NA Intergenic L1MEc|LINE|L1 -148323 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 288-31 chr4 48875740 48876006 + 1.5 NA Intergenic L1MA3|LINE|L1 -15670 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 171.5-32 chr9 79614589 79614847 + 1.5 NA intron (NM_001351563, intron 5 of 17) MER30|DNA|hAT-Charlie 41541 NM_001351556 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 404 chr1 62415772 62416180 + 1.5 NA Intergenic Intergenic -20328 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 211.5-27 chr4 99517329 99517484 + 1.5 NA intron (NM_032149, intron 2 of 8) MLT1K|LTR|ERVL-MaLR 6385 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 313.5-27 chr3 27908602 27908874 + 1.5 NA Intergenic Intergenic -74602 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 204.5-9 chr12 41694168 41694406 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -69902 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 344-32 chr8 99632444 99632863 + 1.5 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -95792 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 141.5-6 chr11 86363678 86363852 + 1.5 NA Intergenic L1ME3|LINE|L1 -10971 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 141-7 chr6 40299145 40299351 + 1.5 NA Intergenic Intergenic 56758 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 172.5-13 chr4 49118928 49119152 + 1.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 132398 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 213.5-14 chr14 49272081 49272377 + 1.5 NA Intergenic Intergenic 314151 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 159-6 chr8 105498702 105498873 + 1.5 NA intron (NM_001362837, intron 3 of 7) L2c|LINE|L2 179244 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 249-30 chr7 3252581 3252884 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -48520 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 186-9 chr17 70294734 70294953 + 1.5 NA Intergenic Intergenic 125308 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 131.5-8 chr11 25549958 25550047 + 1.5 NA Intergenic L1M5|LINE|L1 -639121 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 567.5 chr1 225307042 225307686 + 1.5 NA intron (NM_001367479, intron 58 of 85) L1MD|LINE|L1 120674 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 324-35 chr5 112714344 112714771 + 1.5 NA intron (NM_001354902, intron 1 of 14) MLT1L|LTR|ERVL-MaLR 7059 NM_001354897 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 422-18 chr21 45744613 45744928 + 1.5 NA intron (NM_001348241, intron 2 of 16) L1ME4a|LINE|L1 -3244 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 278.5-8 chr2 44302813 44303079 + 1.5 NA intron (NM_000341, intron 6 of 9) AluSq2|SINE|Alu 27466 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 449.5-8 chr20 24064212 24064595 + 1.5 NA Intergenic MER1A|DNA|hAT-Charlie -75624 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 320.5-10 chr15 77238100 77238467 + 1.5 NA intron (NM_024776, intron 4 of 7) HAL1ME|LINE|L1 -12879 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 216-25 chr8 83626993 83627178 + 1.5 NA Intergenic L1PREC2|LINE|L1 223327 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 173.5-24 chr8 88512196 88512386 + 1.5 NA Intergenic L1MA9|LINE|L1 -184808 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 267-37 chr4 165966353 165966635 + 1.5 NA intron (NM_001204760, intron 1 of 9) MER5B|DNA|hAT-Charlie 93257 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 350-13 chr19 35485041 35485426 + 1.5 NA Intergenic AluSx|SINE|Alu 5231 NM_207392 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 238-12 chr12 11598896 11599208 + 1.5 NA Intergenic Intergenic -50802 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 232-24 chr4 147062630 147062784 + 1.5 NA Intergenic Intergenic -116821 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 341-39 chr9 111514540 111515007 + 1.5 NA Intergenic Intergenic -10406 NM_133464 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 231-11 chr18 11428930 11429124 + 1.5 NA Intergenic Intergenic -25451 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 338.5-23 chr3 113869129 113869413 + 1.5 NA intron (NM_017577, intron 2 of 17) L1M4a2|LINE|L1 -28229 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 212-11 chr18 2228682 2228995 + 1.5 NA Intergenic L1M3c|LINE|L1 342667 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 279.5-10 chr3 159515634 159515831 + 1.5 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 233086 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 343-8 chr12 21310136 21310577 + 1.5 NA intron (NM_021094, intron 3 of 13) Tigger1|DNA|TcMar-Tigger 24561 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 266-41 chr8 82828257 82828511 + 1.5 NA Intergenic Intergenic -83720 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 416-9 chr12 54718497 54719013 + 1.5 NA Intergenic Intergenic -70390 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 454-17 chr22 16824428 16824855 + 1.5 NA Intergenic Intergenic -2833 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 246.5-25 chr3 34112793 34113142 + 1.5 NA Intergenic L2|LINE|L2 314337 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 197.5-8 chr11 19433065 19433239 + 1.5 NA intron (NM_001111018, intron 1 of 37) L3|LINE|CR1 74077 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 178-12 chr22 24545012 24545215 + 1.5 NA intron (NM_001284252, intron 4 of 5) intron (NM_001284252, intron 4 of 5) 10025 NM_001284257 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 344-17 chr17 57444527 57444880 + 1.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 78894 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 239-14 chr2 75635980 75636162 + 1.5 NA Intergenic Intergenic -10712 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 166.5-17 chr4 114507845 114508033 + 1.5 NA Intergenic L1MA7|LINE|L1 -90463 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 196.5-16 chr2 29485248 29485468 + 1.5 NA intron (NM_004304, intron 4 of 28) L1MEi|LINE|L1 -9981 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 174.5-22 chr3 89434815 89435052 + 1.5 NA intron (NM_005233, intron 13 of 16) intron (NM_005233, intron 13 of 16) 327312 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 129-2 chr14 52188170 52188337 + 1.5 NA Intergenic LTR27|LTR|ERV1 -79445 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 227.5-24 chr6 166354951 166355180 + 1.5 NA Intergenic Intergenic 12434 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 195-20 chr7 4293820 4294025 + 1.5 NA Intergenic Intergenic -159085 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 402-15 chr16 72020543 72020960 + 1.5 NA intron (NM_001361, intron 4 of 8) Tigger8|DNA|TcMar-Tigger 12007 NM_001361 1723 Hs.654427 NM_001361 ENSG00000102967 DHODH DHOdehase|POADS|URA1 dihydroorotate dehydrogenase (quinone) protein-coding 344-9 chr12 116485939 116486361 + 1.5 NA Intergenic AluJr|SINE|Alu -47272 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 369.5-24 chr7 12836819 12837165 + 1.5 NA Intergenic L1ME1|LINE|L1 149359 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 329-37 chr8 132011885 132012160 + 1.5 NA non-coding (NR_136615, exon 24 of 24) non-coding (NR_136615, exon 24 of 24) 47360 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 174-30 chr8 73006287 73006468 + 1.5 NA Intergenic Intergenic -2487 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 153.5-11 chr5 115395931 115396110 + 1.5 NA Intergenic MER50|LTR|ERV1 -99366 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 320.5-12 chr2 9978681 9978977 + 1.5 NA intron (NM_198182, intron 8 of 15) AluSq2|SINE|Alu 27136 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 382.5-11 chr17 72956368 72956750 + 1.5 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 136129 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 216.5-25 chr20 57638603 57638781 + 1.5 NA Intergenic AluJo|SINE|Alu -18266 NM_030776 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 300.5-18 chr18 39515420 39515703 + 1.5 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 106614 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 298.5-6 chr11 107120328 107120714 + 1.5 NA Intergenic L1M1|LINE|L1 -102045 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 557-17 chr4 42293441 42293984 + 1.5 NA Intergenic Intergenic 97556 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 201-21 chr6 122888348 122888662 + 1.5 NA Intergenic Intergenic 99247 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 258-23 chr5 118557411 118557770 + 1.5 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 4527 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 436.5-14 chr6 134523445 134523995 + 1.5 NA Intergenic Intergenic 16285 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 277.5-34 chr8 120874744 120875093 + 1.5 NA Intergenic AluSz6|SINE|Alu -62872 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 169.5-11 chr20 10172328 10172558 + 1.5 NA intron (NR_040710, intron 2 of 4) CpG -46355 NM_001322907 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 388-9 chr12 15432041 15432483 + 1.5 NA intron (NM_030667, intron 1 of 26) L1PA13|LINE|L1 109754 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 115-3 chr2 117496358 117496490 + 1.5 NA Intergenic Intergenic -318267 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 215-4 chr1 244189056 244189304 + 1.5 NA Intergenic HAL1ME|LINE|L1 135975 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 210-21 chr7 31609265 31609517 + 1.5 NA intron (NM_194300, intron 8 of 12) L1M4|LINE|L1 56389 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 405.5-5 chr17 50387263 50387797 + 1.5 NA intron (NM_018509, intron 5 of 6) L2a|LINE|L2 9993 NM_018509 55379 Hs.370927 NM_018509 ENSG00000108829 LRRC59 PRO1855|p34 leucine rich repeat containing 59 protein-coding 267 chr1 104361328 104361649 + 1.5 NA Intergenic L1MA10|LINE|L1 288465 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 269.5-34 chr3 78208753 78209128 + 1.5 NA Intergenic MER63B|DNA|hAT-Blackjack -159977 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 188.5-21 chr4 138236303 138236451 + 1.5 NA exon (NM_014331, exon 2 of 12) exon (NM_014331, exon 2 of 12) 5972 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 212-27 chr8 63974000 63974254 + 1.5 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 204697 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 196.5-5 chr12 6677530 6677672 + 1.5 NA intron (NM_001135734, intron 6 of 10) intron (NM_001135734, intron 6 of 10) 11774 NM_133476 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 286-20 chr3 3287971 3288292 + 1.5 NA Intergenic Intergenic -108414 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 159.5-32 chr8 116695547 116695731 + 1.5 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 43539 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 459.5-21 chr8 87969842 87970376 + 1.5 NA Intergenic Intergenic -96094 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 389.5-11 chr12 25678252 25678556 + 1.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -29826 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 441-28 chr3 117531539 117531939 + 1.5 NA Intergenic Intergenic 159186 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 127-10 chr8 108445348 108445432 + 1.5 NA intron (NR_138033, intron 1 of 9) L2c|LINE|L2 1766 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 232-15 chr14 98323787 98323979 + 1.5 NA Intergenic L2a|LINE|L2 -345759 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 334-3 chr1 118938345 118938768 + 1.5 NA intron (NM_152380, intron 1 of 7) L1PA16|LINE|L1 49787 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 308-15 chr18 73952768 73953014 + 1.5 NA Intergenic Intergenic 194943 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 433.5-17 chr2 80915933 80916391 + 1.5 NA Intergenic L1MA2|LINE|L1 550784 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 166-4 chr17 63137553 63137709 + 1.5 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 171396 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 259-8 chr14 59782084 59782449 + 1.5 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 88510 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 488-7 chr2 149455776 149456384 + 1.5 NA intron (NM_194317, intron 3 of 4) intron (NM_194317, intron 3 of 4) 125493 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 746.5-4 chr8 22433350 22434111 + 1.5 NA intron (NM_001135154, intron 8 of 8) AluJb|SINE|Alu -7240 NM_001243974 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 244.5-31 chr4 92510256 92510491 + 1.5 NA intron (NM_001286838, intron 1 of 14) L2a|LINE|L2 205974 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 514.5-11 chr2 149572517 149573095 + 1.5 NA intron (NM_015702, intron 6 of 7) intron (NM_015702, intron 6 of 7) -14552 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 133-3 chr17 70245376 70245500 + 1.5 NA Intergenic L2b|LINE|L2 75903 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 480-8 chr14 45929987 45930445 + 1.5 NA Intergenic Intergenic -133943 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 237-29 chr8 66403310 66403512 + 1.5 NA Intergenic Intergenic 25566 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 260-20 chr20 42998868 42999088 + 1.5 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 30235 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 365.5-23 chr8 51169077 51169576 + 1.5 NA Intergenic Intergenic 640119 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 599.5-11 chr7 106540835 106541298 + 1.5 NA Intergenic MER6|DNA|TcMar-Tigger 120092 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 300.5-24 chr2 133621180 133621470 + 1.5 NA Intergenic L1PB1|LINE|L1 -52862 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 303-19 chr20 32962069 32962439 + 1.5 NA TTS (NM_001143967) TTS (NM_001143967) 42179 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 335.5-28 chr5 56332813 56333067 + 1.5 NA Intergenic L1PB1|LINE|L1 -99610 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 318-34 chr5 104692747 104693022 + 1.5 NA Intergenic Intergenic -406590 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 296-37 chr8 127448723 127449068 + 1.5 NA intron (NR_024393, intron 4 of 4) MER53|DNA|hAT 33070 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 491-30 chr8 61327199 61327794 + 1.5 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 39526 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 145.5-23 chr4 72275073 72275211 + 1.5 NA Intergenic Intergenic 236010 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 251 chr1 96332122 96332440 + 1.5 NA intron (NR_110693, intron 3 of 5) hAT-N1_Mam|DNA|hAT-Tip100? 41844 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 379.5-20 chr7 5346073 5346406 + 1.5 NA intron (NM_001080495, intron 17 of 29) intron (NM_001080495, intron 17 of 29) 63296 NM_001300847 222962 Hs.4302 NM_153247 ENSG00000164638 SLC29A4 ENT4|PMAT solute carrier family 29 member 4 protein-coding 534-27 chr5 143702284 143702756 + 1.5 NA Intergenic Intergenic 22660 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 283-29 chr22 34805674 34806097 + 1.5 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 192031 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 359-21 chr2 21806141 21806443 + 1.5 NA Intergenic MIR|SINE|MIR -95640 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 276-27 chr2 209240450 209240696 + 1.5 NA Intergenic Intergenic -183474 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 313.5-40 chr7 98900499 98900757 + 1.5 NA exon (NM_001244580, exon 11 of 72) exon (NM_001244580, exon 11 of 72) 18931 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 271.5-22 chr2 210625134 210625416 + 1.5 NA intron (NR_163592, intron 11 of 27) intron (NR_163592, intron 11 of 27) 7704 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 468-38 chr5 173805943 173806383 + 1.5 NA Intergenic L2a|LINE|L2 -15221 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 276-7 chr1 156862275 156862591 + 1.5 NA intron (NM_002529, intron 1 of 16) intron (NM_002529, intron 1 of 16) 1554 NM_002529 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding 319-28 chr3 96757984 96758254 + 1.5 NA Intergenic L1MA9|LINE|L1 -56475 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 285.5-22 chr5 90217670 90217871 + 1.5 NA intron (NR_120601, intron 3 of 5) L1MB3|LINE|L1 72301 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 230-30 chr5 145083618 145083786 + 1.5 NA Intergenic L2a|LINE|L2 751640 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 213.5-27 chr5 6635499 6635789 + 1.5 NA intron (NM_001324322, intron 1 of 3) MIR|SINE|MIR 2204 NM_001324323 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 345-12 chr16 13610207 13610498 + 1.5 NA Intergenic MER4A|LTR|ERV1 -309805 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 188.5-7 chr16 9143129 9143386 + 1.5 NA Intergenic AluJr|SINE|Alu 51613 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 302-17 chr3 14939825 14940235 + 1.5 NA Intergenic Intergenic 7475 NR_046253 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 255-26 chr5 45089268 45089615 + 1.5 NA Intergenic L1MA4|LINE|L1 280494 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 223.5-5 chr10 81104433 81104702 + 1.5 NA Intergenic LTR54|LTR|ERV1 454770 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 188.5-19 chr4 98393081 98393323 + 1.5 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 131818 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 208-11 chr17 64696148 64696393 + 1.5 NA Intergenic AluSc|SINE|Alu -33963 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 596.5-9 chr5 61270989 61271558 + 1.5 NA Intergenic Intergenic -6344 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 391.5-2 chr10 72228713 72229093 + 1.5 NA intron (NM_001242548, intron 2 of 2) intron (NM_001242548, intron 2 of 2) -11769 NR_045564 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 389-8 chr12 74407611 74407995 + 1.5 NA Intergenic AluSg|SINE|Alu -115172 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 169-17 chr7 26733918 26734059 + 1.5 NA intron (NM_003930, intron 6 of 12) intron (NM_003930, intron 6 of 12) 96117 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 142.5-2 chr1 182021956 182022088 + 1.5 NA Intergenic Intergenic 39690 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 407-29 chr8 9323684 9324206 + 1.5 NA Intergenic AluSx4|SINE|Alu -1106 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 195-13 chr22 25922176 25922335 + 1.5 NA intron (NM_001318245, intron 34 of 43) intron (NM_001318245, intron 34 of 43) 180067 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 238.5-24 chr3 118759551 118759711 + 1.5 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 51202 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 196-15 chr5 128052871 128053106 + 1.5 NA intron (NR_152812, intron 4 of 4) intron (NR_152812, intron 4 of 4) 30187 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 326.5-27 chr6 25797413 25797776 + 1.5 NA intron (NM_005074, intron 12 of 12) L1MC5a|LINE|L1 34458 NM_005074 6568 Hs.205816 NM_005074 ENSG00000124568 SLC17A1 NAPI-1|NPT-1|NPT1 solute carrier family 17 member 1 protein-coding 482-4 chr11 117181762 117182134 + 1.5 NA exon (NM_001040455, exon 3 of 26) exon (NM_001040455, exon 3 of 26) 3205 NM_001040455 51092 Hs.712144 NM_015996 ENSG00000149577 SIDT2 CGI-40 SID1 transmembrane family member 2 protein-coding 421-25 chr3 168649560 168650049 + 1.5 NA intron (NR_021485, intron 5 of 15) L2c|LINE|L2 97950 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 331-28 chr2 80339614 80340017 + 1.5 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 26436 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 206.5-5 chr11 14308146 14308324 + 1.5 NA intron (NM_001177314, intron 1 of 5) L1ME4b|LINE|L1 50250 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 284.5-33 chr4 190177209 190177399 + 1.5 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 3530 NR_137167 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 367.5-26 chr4 58144547 58144967 + 1.5 NA Intergenic LTR16A1|LTR|ERVL 391571 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 403-6 chr1 215813135 215813518 + 1.5 NA intron (NM_206933, intron 49 of 71) intron (NM_206933, intron 49 of 71) 246022 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 179.5-10 chr21 31332288 31332504 + 1.5 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 11958 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 252.5-29 chr8 83523606 83523940 + 1.5 NA Intergenic Intergenic 120015 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 352.5-16 chr20 11647214 11647582 + 1.5 NA Intergenic MER52D|LTR|ERV1 223317 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 510.5-3 chr13 65115968 65116557 + 1.5 NA Intergenic Intergenic -749785 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 194 chr10 103102854 103103031 + 1.5 NA intron (NM_001351194, intron 4 of 17) intron (NM_001351194, intron 4 of 17) 50879 NM_001351191 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 353-2 chr1 46020289 46020712 + 1.5 NA intron (NM_001324320, intron 12 of 29) intron (NM_001324320, intron 12 of 29) 110173 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 291.5-9 chr16 69500349 69500550 + 1.5 NA Intergenic Intergenic 65419 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 216.5-32 chr5 173043923 173044187 + 1.5 NA Intergenic LTR54|LTR|ERV1 -12297 NM_001168394 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 174-4 chr10 88596679 88596879 + 1.5 NA intron (NM_001010939, intron 7 of 10) intron (NM_001010939, intron 7 of 10) 10017 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 155.5-9 chr20 36097809 36097912 + 1.5 NA intron (NM_001258329, intron 1 of 22) intron (NM_001258329, intron 1 of 22) 5150 NM_177996 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 212.5-13 chr18 76660459 76660680 + 1.5 NA Intergenic Intergenic -21558 NR_110784 101927651 Hs.569848 NR_110784 LINC01927 - long intergenic non-protein coding RNA 1927 ncRNA 259-23 chr5 153621325 153621738 + 1.5 NA intron (NM_001258020, intron 3 of 16) MIRc|SINE|MIR 129359 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 444.5-20 chr8 17270599 17271167 + 1.5 NA intron (NM_001363167, intron 4 of 11) MLT1G3-int|LTR|ERVL-MaLR 23925 NM_001363173 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 203-2 chr10 120375549 120375812 + 1.5 NA Intergenic Intergenic -20457 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 145.5-21 chr3 26261038 26261207 + 1.5 NA Intergenic Intergenic -361684 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 289-40 chr7 104295212 104295466 + 1.5 NA Intergenic AluJr4|SINE|Alu -33317 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 421-28 chr5 27206021 27206572 + 1.5 NA Intergenic Intergenic -167710 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 417-14 chr12 93599783 93600208 + 1.5 NA Intergenic L1M5|LINE|L1 27320 NM_001270471 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 266.5-11 chr17 47255362 47255574 + 1.5 NA intron (NM_000212, intron 1 of 14) AluSc|SINE|Alu 1626 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 491-4 chr10 75902010 75902373 + 1.5 NA intron (NR_131178, intron 3 of 7) MER115|DNA|hAT-Tip100 119430 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 332-25 chr3 71142233 71142654 + 1.5 NA intron (NR_146142, intron 6 of 19) MLT1E3|LTR|ERVL-MaLR -10246 NM_001349342 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 167.5-23 chr6 114776945 114777056 + 1.5 NA Intergenic L1MC5a|LINE|L1 -714123 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 286.5-13 chr17 55908707 55909037 + 1.5 NA Intergenic L1PA15|LINE|L1 157767 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 158.5-20 chr6 136422862 136423091 + 1.5 NA intron (NM_001198617, intron 1 of 15) MIRb|SINE|MIR 43899 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 221-6 chr13 91660654 91660831 + 1.5 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 262121 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 493.5-2 chr1 214925767 214926305 + 1.5 NA Intergenic Intergenic -79506 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 236-13 chr17 74032745 74032999 + 1.5 NA Intergenic Intergenic -170806 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 183.5-27 chr7 31684003 31684213 + 1.5 NA Intergenic Intergenic -2909 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 307-31 chr5 126476322 126476544 + 1.5 NA intron (NR_146196, intron 5 of 14) intron (NR_146196, intron 5 of 14) 11283 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 145 chr1 57515086 57515313 + 1.5 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -90278 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 430.5-12 chr17 61697217 61697686 + 1.5 NA intron (NM_032043, intron 17 of 19) L1MB7|LINE|L1 -106232 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 200.5-29 chr8 124340781 124340951 + 1.5 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 31833 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 201.5-21 chr3 40038064 40038273 + 1.5 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -61843 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 405-27 chr4 173439939 173440336 + 1.5 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) -41021 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 278.5-14 chr22 33939091 33939376 + 1.5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -16345 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 468-21 chr3 11591174 11591620 + 1.5 NA intron (NM_001128219, intron 2 of 4) intron (NM_001128219, intron 2 of 4) -9041 NM_001128220 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 324-30 chr4 120031103 120031530 + 1.5 NA Intergenic Intergenic 35532 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 251.5-3 chr10 58073911 58074117 + 1.5 NA Intergenic L1PB3|LINE|L1 193880 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 191-3 chr14 20010255 20010458 + 1.5 NA Intergenic Intergenic 4837 NM_001004712 122740 Hs.626814 NM_001004712 ENSG00000169484 OR4K14 OR14-18|OR14-22 olfactory receptor family 4 subfamily K member 14 protein-coding 366.5-9 chr14 72668750 72669191 + 1.5 NA intron (NM_001280544, intron 9 of 9) intron (NM_001280544, intron 9 of 9) 152150 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 165.5-4 chr10 91597925 91598118 + 1.5 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 13439 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 263.5-11 chr2 40921391 40921711 + 1.5 NA Intergenic Intergenic -409116 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 143-5 chr5 74877786 74877888 + 1.5 NA Intergenic Intergenic -10871 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 257-13 chr14 71204260 71204513 + 1.5 NA Intergenic L2c|LINE|L2 -116090 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 284.5-17 chr15 53558643 53558966 + 1.5 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -17701 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 304.5-26 chr2 103476381 103476698 + 1.5 NA Intergenic HUERS-P1-int|LTR|ERV1 -492110 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 398.5-3 chr10 25647682 25648220 + 1.5 NA Intergenic Intergenic -3761 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 578-17 chr3 159313874 159314336 + 1.5 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 31459 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 186-26 chr7 13171941 13172115 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie 484395 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 241.5-2 chr1 182998260 182998431 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -25075 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 657.5-8 chr22 28366735 28367381 + 1.5 NA intron (NM_001145418, intron 2 of 22) L1M1|LINE|L1 -92811 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 252.5-19 chr5 45693538 45693826 + 1.5 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 2698 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 139.5-3 chr1 236257859 236258043 + 1.5 NA intron (NM_019891, intron 2 of 15) L1M3de|LINE|L1 24007 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 312.5-7 chr11 133450479 133450922 + 1.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 81801 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 724-5 chr16 66366817 66367641 + 1.5 NA intron (NM_001795, intron 1 of 11) intron (NM_001795, intron 1 of 11) 538 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 230.5-23 chr15 59889241 59889489 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -114946 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 328.5-25 chr2 160536328 160536777 + 1.5 NA Intergenic LTR16C|LTR|ERVL -42745 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 321-6 chr12 47906789 47907181 + 1.5 NA Intergenic MIRc|SINE|MIR -1954 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 203-15 chr21 36112747 36112882 + 1.5 NA intron (NR_040084, intron 1 of 3) MIR|SINE|MIR 7933 NR_147887 105369306 NR_147887 ENSG00000233393 LOC105369306 - uncharacterized LOC105369306 ncRNA 180.5-20 chr7 35594890 35595054 + 1.5 NA Intergenic MER113|DNA|hAT-Charlie 100163 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 326-23 chr20 11662207 11662577 + 1.5 NA Intergenic L1PA12|LINE|L1 208323 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 266.5-26 chr7 80155164 80155430 + 1.5 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 19513 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 148.5-18 chr4 10913261 10913391 + 1.5 NA Intergenic Intergenic -228558 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 486.5 chr1 43768672 43769076 + 1.5 NA intron (NM_001270465, intron 2 of 7) L1M5|LINE|L1 -41531 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 288-26 chr3 108885962 108886232 + 1.5 NA Intergenic AluJb|SINE|Alu 63311 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 320-14 chr2 148873510 148873903 + 1.5 NA Intergenic Intergenic -1521 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 419-23 chr4 38768196 38768614 + 1.5 NA Intergenic Intergenic 14585 NM_001195108 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 588-21 chr2 119986742 119987193 + 1.5 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -26110 NM_020909 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 266-6 chr11 41519652 41519858 + 1.5 NA Intergenic Intergenic -60103 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 124-6 chr6 137156517 137156640 + 1.5 NA intron (NM_181310, intron 3 of 4) intron (NM_181310, intron 3 of 4) 17066 NM_181309 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 636-12 chr17 74249289 74249761 + 1.5 NA intron (NM_001330453, intron 8 of 13) intron (NM_001330453, intron 8 of 13) 1159 NM_052869 94015 Hs.27935 NM_032646 ENSG00000141540 TTYH2 C17orf29 tweety family member 2 protein-coding 217.5-20 chr20 6399371 6399547 + 1.5 NA Intergenic L2c|LINE|L2 -27273 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 289.5-39 chr8 117396265 117396603 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -124279 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 170.5-24 chr8 139994920 139995054 + 1.5 NA intron (NM_001160372, intron 18 of 22) L1MEf|LINE|L1 105548 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 695.5-7 chr8 131294318 131294834 + 1.5 NA Intergenic L2c|LINE|L2 -253667 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 346-30 chr5 10400127 10400490 + 1.5 NA intron (NM_001270660, intron 9 of 24) L1MC5a|LINE|L1 -2056 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 190-9 chr20 48149208 48149377 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -159175 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 445-21 chr5 30292781 30293351 + 1.5 NA Intergenic L1M5|LINE|L1 412506 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 241.5-9 chr12 16718216 16718403 + 1.5 NA Intergenic Intergenic -110095 NR_045012 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 388-36 chr8 141959521 141959969 + 1.5 NA Intergenic L1ME3A|LINE|L1 -173432 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 349.5-11 chr14 64475920 64476224 + 1.5 NA intron (NM_001304508, intron 2 of 2) intron (NM_001304508, intron 2 of 2) 10573 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 122.5-21 chr7 50885976 50886158 + 1.5 NA Intergenic L1MC4a|LINE|L1 -92614 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 418.5-23 chr5 149758649 149759000 + 1.5 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) -13116 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 230.5-28 chr2 69754844 69755049 + 1.5 NA intron (NM_001320700, intron 1 of 12) intron (NM_001320700, intron 1 of 12) 12812 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 363-39 chr9 79022620 79023032 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack 122840 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 192-8 chr14 81178498 81178709 + 1.5 NA 3' UTR (NM_001278940, exon 10 of 10) 3' UTR (NM_001278940, exon 10 of 10) 24231 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 130 chr14 92407634 92407721 + 1.5 NA intron (NM_153647, intron 3 of 17) MSTA|LTR|ERVL-MaLR 83869 NM_153646 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 366.5-33 chr8 136852671 136853147 + 1.5 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 322111 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 199.5-5 chr10 92477579 92477752 + 1.5 NA intron (NR_136399, intron 16 of 25) intron (NR_136399, intron 16 of 25) 20096 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 182.5-15 chr20 36172906 36173160 + 1.5 NA intron (NM_012156, intron 1 of 21) intron (NM_012156, intron 1 of 21) -17273 NR_147703 100130373 Hs.570339 NR_147703 LOC100130373 - uncharacterized LOC100130373 ncRNA 588.5-15 chr6 154030012 154030500 + 1.5 NA intron (NM_001145280, intron 1 of 3) intron (NM_001145280, intron 1 of 3) -8846 NM_001008504 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 143.5-22 chr6 21190128 21190223 + 1.5 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 321717 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 260 chr1 22449073 22449348 + 1.5 NA Intergenic Intergenic -2641 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 143.5-9 chr14 56450886 56451095 + 1.5 NA Intergenic MER4-int|LTR|ERV1 -63341 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 428.5-8 chr12 67893367 67893744 + 1.5 NA Intergenic Intergenic -35680 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 403-36 chr8 37195445 37195930 + 1.5 NA Intergenic HAL1|LINE|L1 298226 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 261-28 chr8 102976419 102976624 + 1.5 NA intron (NR_126338, intron 3 of 3) intron (NR_126338, intron 3 of 3) -44562 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 184.5-14 chr2 27358430 27358630 + 1.5 NA Intergenic AluJo|SINE|Alu -1496 NM_001521 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 247.5-13 chr16 47956793 47957082 + 1.5 NA Intergenic Intergenic -8752 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 187-2 chr1 47499034 47499163 + 1.5 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -61781 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 213.5-32 chr7 49422667 49422979 + 1.5 NA Intergenic L2a|LINE|L2 -350815 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 238.5-3 chr1 210552516 210552787 + 1.5 NA intron (NM_001122834, intron 9 of 11) LTR16|LTR|ERVL 223285 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 120-8 chrX 74967899 74968077 + 1.5 NA Intergenic L2b|LINE|L2 -42536 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 258.5-16 chr3 104801588 104801935 + 1.5 NA Intergenic Intergenic -564952 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 235-6 chr11 23371136 23371499 + 1.5 NA Intergenic L1MA3|LINE|L1 47873 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 449-15 chr17 68743816 68744281 + 1.5 NA Intergenic Intergenic 115894 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 250-27 chr3 6509463 6509698 + 1.5 NA Intergenic Intergenic 295869 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 134.5-25 chr8 144478458 144478570 + 1.5 NA 5' UTR (NM_001329445, exon 1 of 12) 5' UTR (NM_001329445, exon 1 of 12) 163 NM_001329445 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 369.5-19 chr20 57975868 57976318 + 1.5 NA Intergenic Intergenic -27811 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 233-2 chr10 6120148 6120385 + 1.5 NA Intergenic Intergenic -24655 NR_136554 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 395.5-13 chr17 61522136 61522477 + 1.5 NA Intergenic L1MB8|LINE|L1 65818 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 287-9 chr14 61846583 61846911 + 1.5 NA intron (NM_001367656, intron 1 of 7) L1MA2|LINE|L1 34044 NM_001367657 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 272.5-40 chr9 91359615 91359883 + 1.5 NA intron (NM_001698, intron 1 of 9) intron (NM_001698, intron 1 of 9) 2175 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 336-25 chr18 3808117 3808512 + 1.5 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 37044 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 283-23 chr2 172131668 172131861 + 1.5 NA Intergenic AluJb|SINE|Alu 28758 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 303.5-21 chr6 28171762 28172028 + 1.5 NA Intergenic L1M5|LINE|L1 10134 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 211.5-11 chr15 49958441 49958642 + 1.5 NA intron (NR_073597, intron 14 of 26) L1M7|LINE|L1 154838 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 254.5-34 chr20 13218519 13218718 + 1.5 NA Intergenic Intergenic -2656 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 131-2 chr10 44685703 44685852 + 1.5 NA Intergenic Intergenic -225539 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 386.5-5 chr10 118636052 118636347 + 1.5 NA Intergenic L2a|LINE|L2 -40551 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 245-5 chr1 211282703 211282888 + 1.5 NA intron (NM_018254, intron 6 of 10) AluSx|SINE|Alu 22848 NM_018254 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 321.5-9 chr10 59385440 59385922 + 1.5 NA Intergenic Intergenic -22500 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 391.5-16 chr2 24482112 24482487 + 1.5 NA Intergenic L2a|LINE|L2 -8955 NM_003743 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 515-10 chr17 19894799 19895324 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -27125 NM_014683 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 457-9 chr17 54366624 54367166 + 1.5 NA Intergenic L1M5|LINE|L1 -533796 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 512.5-5 chr18 9635556 9636200 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 20614 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 326-18 chr17 78527383 78527726 + 1.5 NA intron (NM_173628, intron 22 of 80) L1MD2|LINE|L1 42644 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 165-6 chr3 53331816 53331988 + 1.5 NA intron (NM_001290207, intron 2 of 7) intron (NM_001290207, intron 2 of 7) 1225 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 257-44 chr8 61512678 61513019 + 1.5 NA intron (NM_004318, intron 24 of 24) intron (NM_004318, intron 24 of 24) 176963 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 133.5-6 chr12 81878145 81878273 + 1.5 NA Intergenic Intergenic -75510 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 316-16 chr2 130952242 130952516 + 1.5 NA intron (NM_001367493, intron 4 of 13) L1PA6|LINE|L1 115465 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 218.5-32 chr7 81618969 81619235 + 1.5 NA intron (NR_126026, intron 2 of 8) intron (NR_126026, intron 2 of 8) 7114 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 187.5-17 chr3 5632556 5632751 + 1.5 NA Intergenic Intergenic -382398 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 158.5-23 chr7 42653556 42653775 + 1.5 NA Intergenic Intergenic 52782 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 382-41 chr8 15853063 15853549 + 1.5 NA Intergenic MIR|SINE|MIR 313043 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 184-10 chr5 108672206 108672446 + 1.5 NA Intergenic Intergenic 55935 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 254-31 chr5 66139185 66139368 + 1.5 NA Intergenic Intergenic -5024 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 167.5-2 chr11 38932930 38933128 + 1.5 NA Intergenic L1PA16|LINE|L1 284171 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 276-6 chr1 116966838 116967212 + 1.5 NA exon (NM_020440, exon 6 of 9) exon (NM_020440, exon 6 of 9) -34725 NM_001256109 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 270-28 chr5 174343003 174343333 + 1.5 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 6814 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 138.5-10 chr2 226671699 226671791 + 1.5 NA Intergenic Intergenic -12952 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 217-27 chr8 90350490 90350806 + 1.5 NA intron (NR_051989, intron 2 of 3) MIR|SINE|MIR 129160 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 147.5-4 chr10 48216462 48216560 + 1.5 NA intron (NM_001018071, intron 12 of 28) intron (NM_001018071, intron 12 of 28) 35246 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 220.5 chr1 32565635 32565845 + 1.5 NA intron (NR_111980, intron 2 of 3) intron (NR_111980, intron 2 of 3) 26313 NR_111980 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 238-28 chr4 65866781 65867008 + 1.5 NA Intergenic (TTTAGT)n|Simple_repeat|Simple_repeat -196399 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 194-12 chr2 159016763 159016910 + 1.5 NA intron (NM_001350063, intron 2 of 24) AluY|SINE|Alu 48196 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 261-9 chr2 17946941 17947311 + 1.5 NA Intergenic L2b|LINE|L2 68459 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 229-15 chr19 5660367 5660519 + 1.5 NA intron (NM_001320572, intron 14 of 20) AluJr|SINE|Alu 19795 NM_001365761 125988 Hs.356626 NM_205767 ENSG00000174917 MICOS13 C19orf70|MIC13|P117|QIL1 mitochondrial contact site and cristae organizing system subunit 13 protein-coding 257-21 chr2 17653024 17653241 + 1.5 NA intron (NM_001366804, intron 4 of 4) intron (NM_001366804, intron 4 of 4) 100678 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 303-14 chr15 62660216 62660554 + 1.5 NA intron (NM_015059, intron 6 of 55) MIR3|SINE|MIR 13074 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 418.5-29 chr8 87001439 87002012 + 1.5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 135310 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 197-9 chr11 58434930 58435061 + 1.5 NA Intergenic AluSz|SINE|Alu 5178 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 245 chr1 6590764 6591070 + 1.5 NA 3' UTR (NM_014851, exon 4 of 4) 3' UTR (NM_014851, exon 4 of 4) 10923 NM_005341 3104 Hs.502330 NM_005341 ENSG00000204859 ZBTB48 HKR3|TZAP|ZNF855|pp9964 zinc finger and BTB domain containing 48 protein-coding 142 chr1 117365736 117365847 + 1.5 NA Intergenic Intergenic -1658 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 271-9 chr14 82884571 82884905 + 1.5 NA Intergenic Intergenic 242106 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 290-34 chr8 86109797 86110162 + 1.5 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 11069 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 379.5-10 chr14 52554195 52554527 + 1.5 NA intron (NM_001353361, intron 1 of 7) intron (NM_001353361, intron 1 of 7) 1525 NM_001353361 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 285.5-6 chr14 82138271 82138575 + 1.5 NA Intergenic Intergenic -395285 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 119.5-11 chr3 184974710 184974824 + 1.5 NA intron (NM_001009921, intron 39 of 46) L1MA4A|LINE|L1 162260 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 365.5-3 chr10 104281112 104281402 + 1.5 NA intron (NM_001191014, intron 3 of 4) intron (NM_001191014, intron 3 of 4) 6091 NM_001191015 119391 Hs.107384 NM_183239 ENSG00000065621 GSTO2 GSTO 2-2|bA127L20.1 glutathione S-transferase omega 2 protein-coding 379.5-11 chr18 58971867 58972287 + 1.5 NA intron (NR_148459, intron 9 of 11) AluSx|SINE|Alu -63602 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 193-10 chr2 106053869 106054022 + 1.5 NA Intergenic Intergenic -11743 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 325.5-6 chr11 7222902 7223254 + 1.5 NA Intergenic Intergenic -11688 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 274-33 chr7 33829663 33829888 + 1.5 NA Intergenic Intergenic -75140 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 242.5-22 chr3 124433658 124433952 + 1.5 NA intron (NM_001322989, intron 16 of 33) intron (NM_001322989, intron 16 of 33) 59473 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 290.5-3 chr1 111810950 111811288 + 1.5 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 45786 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 336 chr1 102525965 102526306 + 1.5 NA Intergenic L2a|LINE|L2 -528901 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 307.5-27 chr4 89486924 89487263 + 1.5 NA Intergenic Intergenic -179293 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 339-10 chr15 63922569 63922877 + 1.5 NA 3' UTR (NM_001363730, exon 10 of 10) 3' UTR (NM_001363730, exon 10 of 10) -5551 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 284-17 chr17 68733270 68733531 + 1.5 NA Intergenic MLT2C2|LTR|ERVL 105246 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 242.5-30 chr5 39561915 39562217 + 1.5 NA Intergenic Intergenic 41635 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 293.5-21 chr2 197307307 197307760 + 1.5 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 3247 NM_001367495 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 292-26 chr3 99759841 99760152 + 1.5 NA intron (NM_001850, intron 3 of 4) intron (NM_001850, intron 3 of 4) -57866 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 178.5-15 chr4 42122846 42123064 + 1.5 NA intron (NM_207406, intron 4 of 5) intron (NM_207406, intron 4 of 5) 29700 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 464.5-12 chr16 75754689 75755121 + 1.5 NA Intergenic Intergenic -28415 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 170-15 chr4 42728061 42728189 + 1.5 NA Intergenic L1MA7|LINE|L1 -71020 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 299.5-35 chr9 34712842 34713069 + 1.5 NA Intergenic L1M4|LINE|L1 -2819 NM_002989 6366 Hs.57907 NM_002989 ENSG00000137077 CCL21 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 C-C motif chemokine ligand 21 protein-coding 226-5 chr10 68045777 68045968 + 1.5 NA intron (NM_001278185, intron 3 of 23) L3|LINE|CR1 29411 NM_022079 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 254.5-28 chr2 42839318 42839655 + 1.5 NA Intergenic AluJr|SINE|Alu -46903 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 265.5-37 chr6 142401007 142401209 + 1.5 NA intron (NM_198569, intron 11 of 24) intron (NM_198569, intron 11 of 24) 99101 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 405.5 chr10 62660920 62661385 + 1.5 NA intron (NM_199451, intron 6 of 7) intron (NM_199451, intron 6 of 7) 140704 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 238.5-44 chrX 82786903 82787139 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -721269 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 227-36 chr9 97423162 97423356 + 1.5 NA intron (NM_001302884, intron 1 of 15) L1MEc|LINE|L1 11163 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 218-42 chrX 50987031 50987319 + 1.5 NA Intergenic MIR|SINE|MIR 76440 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 344-4 chr10 11880166 11880465 + 1.5 NA intron (NR_038222, intron 2 of 5) intron (NR_038222, intron 2 of 5) 14395 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 284-34 chr6 68608195 68608607 + 1.5 NA Intergenic HERVL-int|LTR|ERVL 25923 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 280.5-3 chr10 17784877 17785183 + 1.5 NA intron (NM_001098844, intron 3 of 3) L2|LINE|L2 -24318 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 472.5-11 chr4 53745648 53746312 + 1.5 NA Intergenic Intergenic 50079 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 433-5 chr11 21595678 21596113 + 1.5 NA Intergenic L1PB2|LINE|L1 -597190 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 317.5-16 chr2 117322375 117322640 + 1.5 NA Intergenic Intergenic -492184 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 277.5-7 chr12 107340737 107341007 + 1.5 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 20284 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 210.5-27 chr7 40647461 40647677 + 1.5 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 332370 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 537-6 chr13 27212185 27212687 + 1.5 NA Intergenic LTR12D|LTR|ERV1 24821 NR_120429 102723332 Hs.133166 NR_120429 LINC00412 - long intergenic non-protein coding RNA 412 ncRNA 298-19 chr4 155489928 155490260 + 1.5 NA Intergenic L2a|LINE|L2 -113129 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 133-6 chr9 29755753 29755841 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -542196 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 605.5-8 chr8 88843190 88843914 + 1.5 NA Intergenic MER66C|LTR|ERV1 -516069 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 132.5-5 chr11 2227614 2227759 + 1.5 NA Intergenic L1MCa|LINE|L1 43266 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 314-7 chr12 5601091 5601470 + 1.5 NA intron (NM_001278596, intron 20 of 25) intron (NM_001278596, intron 20 of 25) 107148 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 288-3 chr10 79409783 79410150 + 1.5 NA intron (NM_153367, intron 2 of 3) intron (NM_153367, intron 2 of 3) 35658 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 173-8 chr2 78357173 78357372 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -66541 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 148.5-24 chr7 26621234 26621439 + 1.5 NA Intergenic Intergenic -16535 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 289-36 chr5 14752826 14753155 + 1.5 NA intron (NM_054027, intron 4 of 11) L2|LINE|L2 40296 NR_046285 100130744 Hs.660550 NR_046285 LOC100130744 - uncharacterized LOC100130744 ncRNA 243-28 chr6 23544621 23544818 + 1.5 NA Intergenic Intergenic -581496 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 303.5-30 chr8 111287885 111288152 + 1.5 NA Intergenic Intergenic -51815 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 431.5-20 chr7 49435512 49435981 + 1.5 NA Intergenic Intergenic -337892 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 134-4 chr12 98837801 98837944 + 1.5 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) 56902 NM_001204065 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 419-19 chr20 5937261 5937681 + 1.5 NA TTS (NM_001281467) TTS (NM_001281467) 13062 NM_015939 51605 Hs.128791 NM_015939 ENSG00000089195 TRMT6 CGI-09|GCD10|Gcd10p tRNA methyltransferase 6 protein-coding 140-2 chr1 119207934 119208092 + 1.5 NA intron (NR_125975, intron 4 of 6) L1MEc|LINE|L1 -67341 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 470-16 chr15 70390664 70391045 + 1.5 NA Intergenic L1ME2|LINE|L1 115074 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 268-2 chr1 234769078 234769258 + 1.5 NA Intergenic Intergenic -9112 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 253-19 chr22 34896144 34896395 + 1.5 NA intron (NR_138042, intron 3 of 4) L2c|LINE|L2 101647 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 274.5-11 chr14 57863156 57863469 + 1.5 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 1687 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 140-6 chr2 29348503 29348684 + 1.5 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) -124693 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 340.5-13 chr2 47856687 47857207 + 1.5 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 31772 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 300.5-14 chr13 52638172 52638528 + 1.5 NA intron (NM_001011725, intron 5 of 5) intron (NM_001011725, intron 5 of 5) -14486 NM_001130912 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 565-4 chr15 19954581 19955019 + 1.5 NA Intergenic Intergenic -327944 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 304.5-2 chr1 34498307 34498552 + 1.5 NA Intergenic Intergenic 171265 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 310.5-11 chr12 14270590 14270884 + 1.5 NA Intergenic MER34A|LTR|ERV1 -94895 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 332-39 chr7 68198303 68198742 + 1.5 NA Intergenic AluSp|SINE|Alu 178269 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 236.5-22 chr2 220762646 220762906 + 1.5 NA Intergenic L1MEf|LINE|L1 809528 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 272.5-13 chr15 60099114 60099370 + 1.5 NA Intergenic MIRb|SINE|MIR 94931 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 289-24 chr2 64851097 64851410 + 1.5 NA intron (NR_110224, intron 1 of 4) AluSx1|SINE|Alu 12378 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 219-17 chr16 5774055 5774403 + 1.5 NA Intergenic Intergenic 141762 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 281.5-27 chr5 38044820 38045134 + 1.5 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 19280 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 479.5-13 chr5 68386058 68386812 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 93858 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 298-2 chr1 182999551 182999774 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -23758 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 337-20 chr3 177449076 177449359 + 1.5 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 7296 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 429.5-5 chr12 60334834 60335250 + 1.5 NA Intergenic L1MC1|LINE|L1 645672 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 215-16 chr18 73051152 73051385 + 1.5 NA Intergenic L1ME2z|LINE|L1 182228 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 309.5-16 chr21 14226270 14226711 + 1.5 NA intron (NR_135310, intron 4 of 4) AluSx|SINE|Alu 10333 NM_144770 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 283.5-21 chr21 28517113 28517466 + 1.5 NA Intergenic MER45R|DNA|hAT-Tip100 -22029 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 131-4 chr16 87131224 87131367 + 1.5 NA Intergenic Intergenic 73511 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 426.5-11 chr17 75226113 75226533 + 1.5 NA intron (NM_001303276, intron 10 of 17) MLT1A1|LTR|ERVL-MaLR 20644 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 188.5-17 chr4 37295584 37295716 + 1.5 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 50907 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 351.5-2 chr11 30799745 30800064 + 1.5 NA Intergenic AluSg4|SINE|Alu 192782 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 207-5 chr11 26096167 26096337 + 1.5 NA Intergenic Intergenic -92871 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 386.5-2 chr1 42402956 42403523 + 1.5 NA intron (NM_173642, intron 2 of 4) Tigger15a|DNA|TcMar-Tigger 22447 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 236.5-16 chr15 101731904 101732080 + 1.5 NA Intergenic L2c|LINE|L2 -7519 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 333.5-14 chr22 25998078 25998441 + 1.5 NA intron (NM_001318245, intron 40 of 43) intron (NM_001318245, intron 40 of 43) -171203 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 350-8 chr15 60873360 60873755 + 1.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 191988 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 316-46 chr8 119514080 119514400 + 1.5 NA Intergenic MamRep1527|LTR|LTR 78768 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 388.5-27 chrX 41983131 41983546 + 1.5 NA Intergenic L2a|LINE|L2 -59784 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 681-12 chr8 92337582 92338191 + 1.5 NA Intergenic L1PB2|LINE|L1 -234501 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 405.5-11 chr20 53002726 53003171 + 1.5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 30590 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 284.5-42 chr8 86097921 86098138 + 1.5 NA promoter-TSS (NM_152565) promoter-TSS (NM_152565) -881 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 348-15 chr15 47592656 47593146 + 1.5 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -124604 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 316.5-28 chr8 139206817 139207140 + 1.5 NA Intergenic Intergenic -292937 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 362.5-16 chr19 30970593 30970918 + 1.5 NA Intergenic MER115|DNA|hAT-Tip100 -196755 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 239-22 chr3 98771168 98771547 + 1.5 NA intron (NM_001323366, intron 5 of 11) intron (NM_001323366, intron 5 of 11) 8050 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 198-23 chr8 72119597 72119898 + 1.5 NA Intergenic Intergenic -44163 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 241.5-36 chr8 79078966 79079248 + 1.5 NA Intergenic Intergenic 241578 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 526.5-9 chr16 2824987 2825424 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR -4967 NM_145252 124220 Hs.105887 NM_145252 ENSG00000162078 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 426-23 chr21 44803738 44804288 + 1.5 NA non-coding (NR_109928, exon 2 of 2) non-coding (NR_109928, exon 2 of 2) 1772 NR_109928 101928689 Hs.116142 NR_109928 LINC01424 - long intergenic non-protein coding RNA 1424 ncRNA 543.5-11 chr20 56723110 56723781 + 1.5 NA Intergenic Intergenic 94139 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 350-24 chr4 67493735 67493993 + 1.5 NA intron (NR_155754, intron 14 of 18) intron (NR_155754, intron 14 of 18) 51639 NR_155754 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 408-24 chr2 185932410 185932795 + 1.5 NA Intergenic Intergenic -132451 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 253.5-14 chr18 11228645 11228927 + 1.5 NA Intergenic L1MC2|LINE|L1 -80024 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 177-6 chr14 82076717 82076876 + 1.5 NA Intergenic Intergenic -333658 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 238-16 chr17 63362596 63362832 + 1.5 NA intron (NM_025185, intron 13 of 25) MER52A|LTR|ERV1 77553 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 467.5-21 chrX 126674740 126675346 + 1.5 NA Intergenic L1PA11|LINE|L1 -122229 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 368.5-8 chr10 68422316 68422687 + 1.5 NA intron (NM_001080449, intron 16 of 20) intron (NM_001080449, intron 16 of 20) -15207 NM_001278225 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 289-33 chr4 41638707 41639187 + 1.5 NA exon (NM_014988, exon 9 of 27) exon (NM_014988, exon 9 of 27) 26045 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 320.5-2 chr1 191704526 191704739 + 1.5 NA Intergenic AluSc8|SINE|Alu -453830 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 123-4 chr18 6609542 6609679 + 1.5 NA Intergenic Intergenic 98194 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 221.5-28 chr8 86426120 86426318 + 1.5 NA intron (NM_007013, intron 10 of 24) intron (NM_007013, intron 10 of 24) 82467 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 314.5-6 chr10 106631069 106631354 + 1.5 NA intron (NM_001206569, intron 18 of 25) intron (NM_001206569, intron 18 of 25) 491046 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 284.5-13 chr12 111577461 111577679 + 1.5 NA intron (NM_001310121, intron 1 of 25) intron (NM_001310121, intron 1 of 25) 21745 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 574-9 chr19 46082913 46083677 + 1.5 NA Intergenic L1ME4b|LINE|L1 -5666 NR_163176 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 380-13 chr4 54007060 54007615 + 1.5 NA Intergenic Intergenic -20055 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 257-27 chr2 237470392 237470709 + 1.5 NA Intergenic Intergenic -15860 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 300.5-5 chr10 32184117 32184489 + 1.5 NA Intergenic AluSq2|SINE|Alu -127878 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 234-27 chr8 134873468 134873772 + 1.5 NA intron (NR_125427, intron 1 of 2) MIR|SINE|MIR 23685 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 403-10 chr11 28558945 28559426 + 1.5 NA Intergenic L2b|LINE|L2 -81637 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 377.5-21 chr8 140519350 140519813 + 1.5 NA TTS (NM_012154) TTS (NM_012154) 7585 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 313.5-3 chr1 118795229 118795638 + 1.5 NA Intergenic L1MA10|LINE|L1 192910 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 274.5-9 chr13 58882279 58882704 + 1.5 NA Intergenic Intergenic -649374 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 224.5-2 chr1 86227837 86228094 + 1.5 NA Intergenic Intergenic -70981 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 191.5-13 chr2 172660849 172661047 + 1.5 NA Intergenic Intergenic -74897 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 157.5-24 chr7 122905909 122906104 + 1.5 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -19247 NM_001167940 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 336-7 chr10 74093351 74093614 + 1.5 NA intron (NM_014000, intron 10 of 21) MIR|SINE|MIR 57346 NM_012095 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 244.5-39 chr7 18778891 18779095 + 1.5 NA intron (NM_058176, intron 15 of 22) intron (NM_058176, intron 15 of 22) 269723 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 317-30 chr9 30844762 30845005 + 1.5 NA Intergenic Intergenic -436429 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 441.5-7 chr12 49757183 49757548 + 1.5 NA intron (NM_001098576, intron 4 of 9) intron (NM_001098576, intron 4 of 9) 15556 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 227.5-25 chr7 7071341 7071586 + 1.5 NA Intergenic SATR1|Satellite|Satellite -4418 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 384-24 chr3 136855022 136855609 + 1.5 NA exon (NM_025246, exon 2 of 2) exon (NM_025246, exon 2 of 2) 6748 NR_110177 101927597 Hs.559587 NR_110175 NCK1-DT NCK1-AS1|SLC35G2-AS1 NCK1 divergent transcript ncRNA 593-12 chr3 62525954 62526474 + 1.5 NA intron (NM_003716, intron 13 of 29) intron (NM_003716, intron 13 of 29) -152664 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 285.5-18 chr4 89022756 89022948 + 1.5 NA intron (NM_014883, intron 2 of 23) MLT1F2|LTR|ERVL-MaLR 34333 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 455-22 chr3 5672691 5673124 + 1.5 NA Intergenic Intergenic -422652 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 274.5-8 chr12 114114835 114115252 + 1.5 NA Intergenic Intergenic 126727 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 208.5-34 chrX 50795020 50795182 + 1.5 NA intron (NR_027121, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 18943 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 225.5-34 chr7 18746718 18746868 + 1.5 NA intron (NM_058176, intron 12 of 22) L2c|LINE|L2 237523 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 344-21 chr2 44036528 44036863 + 1.5 NA Intergenic Intergenic -40706 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 316-35 chr5 146104039 146104495 + 1.5 NA exon (NM_001029869, exon 1 of 4) exon (NM_001029869, exon 1 of 4) 1310 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 151 chr1 102657718 102657897 + 1.5 NA Intergenic L1ME2|LINE|L1 450689 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 195.5-3 chr10 23307127 23307403 + 1.5 NA intron (NM_001351306, intron 4 of 5) intron (NM_001351306, intron 4 of 5) -36692 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 226.5-8 chr15 59326422 59326752 + 1.5 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 46284 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 315.5-29 chr4 118100429 118100841 + 1.5 NA intron (NM_004784, intron 2 of 13) intron (NM_004784, intron 2 of 13) 66149 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 401.5-19 chr3 5452551 5452884 + 1.5 NA Intergenic Intergenic -202462 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 131.5-5 chr10 89666215 89666325 + 1.5 NA Intergenic L2c|LINE|L2 -20698 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 219-23 chr22 22041763 22041932 + 1.5 NA intron (NR_135291, intron 1 of 6) intron (NR_135291, intron 1 of 6) 2087 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 274-21 chr3 80053110 80053374 + 1.5 NA Intergenic Intergenic -285244 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 306.5-3 chr1 155601224 155601467 + 1.5 NA Intergenic AluSx1|SINE|Alu -8825 NM_001350783 55154 Hs.656547 NM_018116 ENSG00000125459 MSTO1 LST005|MMYAT|MST misato mitochondrial distribution and morphology regulator 1 protein-coding 293 chr11 7473432 7473687 + 1.5 NA Intergenic Intergenic -7724 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 282.5-13 chr13 25270686 25271114 + 1.5 NA intron (NM_004685, intron 2 of 13) intron (NM_004685, intron 2 of 13) 16588 NM_004685 9107 Hs.643702 NM_004685 ENSG00000139505 MTMR6 - myotubularin related protein 6 protein-coding 120-6 chr8 141461034 141461114 + 1.5 NA intron (NR_102364, intron 18 of 26) L1MC4|LINE|L1 39686 NM_007079 11156 Hs.43666 NM_007079 ENSG00000184489 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase 4A3 protein-coding 691 chr10 14596060 14596555 + 1.5 NA intron (NM_001282695, intron 2 of 5) L2a|LINE|L2 8094 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 381.5-25 chr8 6261080 6261375 + 1.5 NA Intergenic MER83|LTR|ERV1 145321 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 215-30 chr7 92066691 92066908 + 1.5 NA intron (NM_147185, intron 26 of 49) L2|LINE|L2 67678 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 448-12 chr16 73120278 73120840 + 1.5 NA Intergenic AluJo|SINE|Alu 23888 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 344.5 chr1 29701041 29701464 + 1.5 NA Intergenic MIRc|SINE|MIR 336360 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 255.5-25 chr7 49036821 49037199 + 1.5 NA Intergenic Intergenic 112463 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 376-14 chr19 38877130 38877436 + 1.5 NA intron (NM_001195833, intron 1 of 11) MamRep38|DNA|hAT 992 NM_198445 126432 Hs.446933 NM_198445 ENSG00000187994 RINL - Ras and Rab interactor like protein-coding 261.5-41 chr9 36057610 36057820 + 1.5 NA intron (NM_001316345, intron 3 of 22) AluJb|SINE|Alu 20802 NM_021111 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 301-17 chr13 22673490 22673690 + 1.5 NA Intergenic Intergenic 224591 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 200-12 chr18 7641088 7641301 + 1.5 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 73878 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 182.5-23 chr4 126785798 126785963 + 1.5 NA Intergenic Intergenic -847077 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 315-11 chr12 15630123 15630544 + 1.5 NA intron (NM_004447, intron 18 of 20) intron (NM_004447, intron 18 of 20) 83722 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 487-29 chr4 177756669 177757204 + 1.5 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 28179 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 192.5-21 chr21 43263075 43263241 + 1.5 NA Intergenic Intergenic 68881 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 687 chr1 83715678 83716439 + 1.5 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 144488 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 172.5-11 chr2 221750997 221751180 + 1.5 NA Intergenic Intergenic -176886 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 281-6 chr10 109199180 109199545 + 1.5 NA Intergenic Intergenic 723884 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 282.5-18 chr2 109596032 109596341 + 1.5 NA intron (NM_001321509, intron 1 of 10) AluJb|SINE|Alu 17481 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 349-7 chr10 64548340 64548752 + 1.5 NA Intergenic FRAM|SINE|Alu -276982 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 204-9 chr12 56894485 56894730 + 1.5 NA Intergenic L1ME4a|LINE|L1 39801 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 354-4 chr1 247039811 247040289 + 1.5 NA intron (NM_033213, intron 1 of 3) MER68|LTR|ERVL -31993 NM_020394 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 290-21 chr3 25959026 25959391 + 1.5 NA Intergenic L2b|LINE|L2 -85513 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 539.5-21 chr9 81880541 81881173 + 1.5 NA Intergenic Intergenic -32580 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 444-29 chr7 87439776 87440201 + 1.5 NA intron (NM_018849, intron 13 of 27) intron (NM_018849, intron 13 of 27) 35692 NM_000443 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 536.5-9 chr15 58174573 58175014 + 1.5 NA intron (NM_020980, intron 3 of 5) intron (NM_020980, intron 3 of 5) 36412 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 218-39 chr9 27447494 27447833 + 1.5 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -76651 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 210.5-5 chr12 46746943 46747172 + 1.5 NA Intergenic L1PREC2|LINE|L1 78940 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 201.5-28 chr8 32433555 32433785 + 1.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -7076 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 338-27 chr4 37094314 37094588 + 1.5 NA Intergenic Intergenic 92672 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 373.5-25 chr7 655294 655604 + 1.5 NA intron (NM_001164760, intron 4 of 10) L2a|LINE|L2 52051 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 356.5-14 chr13 95694056 95694320 + 1.5 NA intron (NM_006260, intron 1 of 11) intron (NM_006260, intron 1 of 11) 17049 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 230-34 chr8 102628329 102628562 + 1.5 NA Intergenic Intergenic 25519 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 227.5-9 chr18 7827654 7827817 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 260419 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 181-24 chr9 81458281 81458506 + 1.5 NA Intergenic L1MEg|LINE|L1 231142 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 578-10 chr15 80620695 80621291 + 1.5 NA Intergenic Intergenic 39890 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 614.5-12 chr7 97655218 97655749 + 1.5 NA Intergenic Intergenic -76603 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 202-19 chr4 181719993 181720244 + 1.5 NA Intergenic Intergenic 109855 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 356.5-2 chr1 72009823 72010226 + 1.5 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -173012 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 355-10 chr16 7300830 7301359 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -31751 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 394-28 chr8 124182462 124182792 + 1.5 NA Intergenic Intergenic -11105 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 318-42 chr7 103044643 103044918 + 1.5 NA intron (NM_001111038, intron 2 of 18) intron (NM_001111038, intron 2 of 18) 29788 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 500 chr1 155682621 155683025 + 1.5 NA intron (NM_001198901, intron 1 of 9) AluSq2|SINE|Alu -2994 NM_001198899 55249 Hs.584927 NM_018253 ENSG00000163374 YY1AP1 GRNG|HCCA1|HCCA2|YY1AP YY1 associated protein 1 protein-coding 310.5-17 chr15 90007178 90007452 + 1.5 NA TTS (NR_036135) TTS (NR_036135) 560 NR_036135 100422841 NR_036135 ENSG00000265871 MIR3174 - microRNA 3174 ncRNA 286.5-11 chr15 98016324 98016690 + 1.5 NA intron (NR_146563, intron 2 of 2) L2a|LINE|L2 13469 NR_146564 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 390-18 chr22 47560865 47561175 + 1.5 NA Intergenic Intergenic 70549 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 236-9 chr13 45857823 45858053 + 1.5 NA Intergenic Intergenic -6185 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 232-22 chr3 86619347 86619580 + 1.5 NA Intergenic HUERS-P3-int|LTR|ERV1 137520 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 124.5-3 chr12 6656472 6656584 + 1.5 NA intron (NM_001127585, intron 1 of 6) MamRTE1|LINE|RTE-BovB 6591 NM_001127584 51147 Hs.524210 NM_016162 ENSG00000111653 ING4 my036|p29ING4 inhibitor of growth family member 4 protein-coding 265.5-23 chr3 32630808 32631020 + 1.5 NA Intergenic MamRep488|DNA|hAT-Tip100 -54274 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 386-9 chr15 95787481 95787914 + 1.5 NA Intergenic L1MA9|LINE|L1 340144 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 395.5-18 chr2 137832746 137833106 + 1.5 NA Intergenic Intergenic 95006 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 399-39 chr8 131910958 131911257 + 1.5 NA intron (NM_001323555, intron 1 of 22) Charlie4z|DNA|hAT-Charlie -5666 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 173-13 chr4 49123541 49123704 + 1.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 136980 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 340-2 chr1 65591978 65592327 + 1.5 NA intron (NM_001003679, intron 5 of 19) L1ME1|LINE|L1 66463 NM_001198689 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 230.5-29 chr2 75506648 75506832 + 1.5 NA intron (NM_032181, intron 3 of 3) intron (NM_032181, intron 3 of 3) -17328 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 135 chr16 12963449 12963639 + 1.5 NA intron (NM_001145204, intron 2 of 4) MIR|SINE|MIR 61946 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 367.5-27 chr4 99605921 99606328 + 1.5 NA intron (NM_001300785, intron 10 of 17) intron (NM_001300785, intron 10 of 17) 42046 NM_000253 4547 Hs.195799 NM_000253 ENSG00000138823 MTTP ABL|MTP microsomal triglyceride transfer protein protein-coding 409-14 chr2 68226602 68227107 + 1.5 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 25678 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 318.5-30 chr6 71759544 71759885 + 1.5 NA Intergenic LTR78|LTR|ERV1 -126989 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 393-26 chr3 138136786 138137251 + 1.5 NA Intergenic L2|LINE|L2 -4628 NM_016161 51146 Hs.278960 NM_016161 ENSG00000118017 A4GNT alpha4GnT alpha-1,4-N-acetylglucosaminyltransferase protein-coding 418-13 chr2 210917923 210918547 + 1.5 NA Intergenic Intergenic 300664 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 423.5-18 chr2 51608510 51609027 + 1.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 576167 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 417-20 chr16 66161467 66161821 + 1.5 NA Intergenic MIRc|SINE|MIR -205047 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 186-19 chr3 182612217 182612449 + 1.5 NA Intergenic Intergenic -105209 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 442.5-16 chr21 21431107 21431709 + 1.5 NA intron (NM_001352592, intron 12 of 18) intron (NM_001352592, intron 12 of 18) 284246 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 202.5-5 chr1 209641783 209642009 + 1.5 NA intron (NM_001017402, intron 2 of 21) intron (NM_001017402, intron 2 of 21) 9438 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 294.5-30 chr6 38150218 38150489 + 1.5 NA intron (NM_021943, intron 5 of 5) intron (NM_021943, intron 5 of 5) 330626 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 265-6 chr10 87642151 87642377 + 1.5 NA Intergenic Intergenic -17614 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 282.5-20 chr20 51846934 51847159 + 1.5 NA intron (NR_110016, intron 1 of 2) AluSx|SINE|Alu 15867 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 211-10 chr15 87931289 87931562 + 1.5 NA intron (NM_001320135, intron 14 of 15) MIRb|SINE|MIR 14843 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 445.5-13 chr21 17850911 17851321 + 1.5 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) -31760 NM_017447 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 167.5-29 chrX 103178871 103179036 + 1.5 NA Intergenic Intergenic -36139 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 113-2 chr4 75080583 75080692 + 1.5 NA Intergenic Intergenic 4071 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 479.5-3 chr12 566003 566512 + 1.5 NA intron (NM_016533, intron 1 of 3) MIR3|SINE|MIR 20229 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 351-38 chr6 62923542 62923993 + 1.5 NA Intergenic Intergenic 396210 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 115-6 chr8 125276079 125276174 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -154232 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 236-27 chr5 66583953 66584193 + 1.5 NA Intergenic Intergenic -12320 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 215-27 chr5 16019037 16019224 + 1.5 NA Intergenic Intergenic 83948 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 360 chr1 24263362 24263681 + 1.5 NA Intergenic AluJo|SINE|Alu -55836 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 211-28 chr8 82063037 82063191 + 1.5 NA Intergenic Intergenic -220828 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 137.5-13 chr15 78301980 78302130 + 1.5 NA Intergenic Intergenic -2446 NM_025234 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 276.5-17 chr19 6578819 6579167 + 1.5 NA Intergenic LTR19A|LTR|ERV1 12157 NM_001330332 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A CD70 molecule protein-coding 283.5-39 chrX 43609030 43609426 + 1.5 NA Intergenic L1MA2|LINE|L1 -45679 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 558.5-7 chr12 54465762 54466353 + 1.5 NA intron (NM_144594, intron 2 of 8) intron (NM_144594, intron 2 of 8) 7545 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 252-30 chr8 122090489 122090776 + 1.5 NA Intergenic Intergenic -449192 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 222-26 chr7 5661941 5662213 + 1.5 NA TTS (NR_046834) TTS (NR_046834) 18384 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 412.5-4 chr11 108877790 108878220 + 1.5 NA intron (NM_004398, intron 16 of 17) (TCTTTT)n|Simple_repeat|Simple_repeat 212936 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 534.5-2 chr11 81193717 81194131 + 1.5 NA Intergenic L2c|LINE|L2 -431121 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 359.5-8 chr12 70721704 70722315 + 1.5 NA intron (NM_130846, intron 2 of 9) intron (NM_130846, intron 2 of 9) 32599 NM_130846 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 520.5-18 chr7 113241419 113241882 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -123068 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 311.5-9 chr10 78459599 78459893 + 1.5 NA Intergenic Intergenic 192404 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 196.5-22 chr20 55689149 55689345 + 1.5 NA Intergenic Intergenic -262050 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 431-17 chr20 44375404 44375947 + 1.5 NA intron (NM_175914, intron 1 of 9) intron (NM_175914, intron 1 of 9) 19874 NM_001287183 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 295.5-19 chr22 19709584 19709897 + 1.5 NA Intergenic Intergenic -4763 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 159.5-30 chr8 67129534 67129732 + 1.5 NA intron (NM_001363133, intron 13 of 27) L1MB8|LINE|L1 45785 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 146.5-24 chr22 26109194 26109330 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -60200 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 266.5-19 chr3 48899118 48899341 + 1.5 NA promoter-TSS (NM_000387) promoter-TSS (NM_000387) -347 NM_000387 788 Hs.13845 NM_000387 ENSG00000178537 SLC25A20 CAC|CACT solute carrier family 25 member 20 protein-coding 455.5-4 chr14 83259704 83260007 + 1.5 NA Intergenic AluSx3|SINE|Alu 617223 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 225.5-2 chr1 63954478 63954661 + 1.5 NA intron (NM_005012, intron 1 of 8) MER2|DNA|TcMar-Tigger 157636 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 287-45 chr9 27785661 27785991 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -211960 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 312.5-13 chr18 7845558 7845849 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 278387 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 194.5-36 chrX 19315095 19315248 + 1.5 NA Intergenic L1MA9|LINE|L1 -28722 NM_001173454 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 582.5-9 chr5 19792114 19792904 + 1.5 NA intron (NM_001349559, intron 3 of 12) MLT2B3|LTR|ERVL 93763 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 351-20 chr2 86400654 86401094 + 1.5 NA Intergenic AluSx|SINE|Alu -40497 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 341.5-15 chr2 51066074 51066428 + 1.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 33650 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 238.5-34 chr6 53991970 53992146 + 1.5 NA intron (NR_125842, intron 2 of 3) L1MC4a|LINE|L1 -6832 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 304.5-31 chr4 39971476 39971843 + 1.5 NA intron (NM_001100399, intron 2 of 32) AluSz|SINE|Alu 6252 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 618.5-11 chrM 10805 11361 + 1.5 NA Intergenic Intergenic -3569 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 254-15 chr2 107358821 107359039 + 1.5 NA Intergenic Intergenic -9405 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 201-25 chr7 123635035 123635254 + 1.5 NA intron (NM_080928, intron 9 of 9) L1ME3B|LINE|L1 -10187 NR_111922 102724555 Hs.83916 NR_111922 ENSG00000230442 LOC102724555 - uncharacterized LOC102724555 ncRNA 188.5-28 chr9 106104702 106104908 + 1.5 NA Intergenic Intergenic 410264 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 206.5-23 chr2 138690760 138691052 + 1.5 NA intron (NM_007226, intron 1 of 1) L2a|LINE|L2 89484 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 142-11 chr8 75006712 75006893 + 1.5 NA intron (NM_001286778, intron 1 of 13) intron (NM_001286778, intron 1 of 13) 6647 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 389-35 chr4 122599588 122599983 + 1.5 NA Intergenic L1MEf|LINE|L1 -19198 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 257.5-20 chr2 7905722 7906006 + 1.5 NA Intergenic MIR3|SINE|MIR -6209 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 250-4 chr10 41755988 41756216 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 611943 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 298.5-8 chr12 38380553 38380906 + 1.5 NA Intergenic L1PB1|LINE|L1 63955 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 246.5-19 chr2 202422865 202423201 + 1.5 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 46706 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 133-5 chr8 80959348 80959452 + 1.5 NA Intergenic MIRb|SINE|MIR -84619 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 177 chr1 82555239 82555454 + 1.5 NA Intergenic L2a|LINE|L2 -347837 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 538.5-2 chr10 53101811 53102263 + 1.5 NA Intergenic Intergenic -330337 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 159-2 chr4 47945635 47945812 + 1.5 NA intron (NM_000087, intron 6 of 10) intron (NM_000087, intron 6 of 10) -31056 NR_103795 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 301-10 chr10 125631331 125631610 + 1.5 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 51693 NM_001318133 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 146.5-18 chr2 69774793 69774890 + 1.5 NA intron (NM_001365496, intron 2 of 13) MER21-int|LTR|ERVL 32707 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 319-23 chr2 103092420 103092739 + 1.5 NA Intergenic L1PREC2|LINE|L1 -108150 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 301.5-15 chr5 68757069 68757451 + 1.5 NA Intergenic Intergenic 272667 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 223-31 chr9 32457325 32457542 + 1.5 NA intron (NM_014314, intron 17 of 17) intron (NM_014314, intron 17 of 17) 68763 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 254-17 chr2 114667829 114668140 + 1.5 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 165564 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 224-20 chr3 68672956 68673161 + 1.5 NA Intergenic Intergenic 172421 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 561.5-12 chr7 31455045 31455537 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -58780 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 115.5-18 chr6 53640150 53640250 + 1.5 NA Intergenic Intergenic 11820 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 264.5-22 chr2 143518744 143518980 + 1.5 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 389443 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 328-8 chr11 119034916 119035279 + 1.5 NA Intergenic AluJr|SINE|Alu -4191 NM_001164277 2542 Hs.719203 NM_001467 ENSG00000137700 SLC37A4 G6PT1|G6PT2|G6PT3|GSD1b|GSD1c|GSD1d|PRO0685|TRG-19|TRG19 solute carrier family 37 member 4 protein-coding 434.5-12 chr4 99807596 99808006 + 1.5 NA Intergenic Intergenic -9026 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 334.5-15 chr20 31394486 31394837 + 1.5 NA Intergenic MIR|SINE|MIR -4012 NR_073152 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 245-29 chr4 176809673 176809983 + 1.5 NA Intergenic Intergenic -16906 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 235-37 chr8 121898911 121899128 + 1.5 NA Intergenic Intergenic -257579 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 188-11 chr2 114552721 114552941 + 1.5 NA intron (NM_001321908, intron 2 of 25) AluSq|SINE|Alu 91254 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 184.5-18 chr4 121375994 121376164 + 1.5 NA intron (NM_198179, intron 1 of 5) intron (NM_198179, intron 1 of 5) 4939 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 427.5-30 chrX 96267297 96267704 + 1.5 NA Intergenic Intergenic 70402 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 301-24 chr2 73502523 73502884 + 1.5 NA intron (NM_015120, intron 10 of 22) L1M5|LINE|L1 45600 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 245-12 chr14 46358247 46358476 + 1.5 NA intron (NR_102702, intron 3 of 3) L1MA6|LINE|L1 -112998 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 376.5-11 chr19 32457160 32457513 + 1.5 NA intron (NM_207325, intron 10 of 18) L4_A_Mam|LINE|RTE-X 51211 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 446 chr1 40020525 40020868 + 1.5 NA Intergenic AluJr|SINE|Alu -19369 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 270.5-36 chr9 81674290 81674728 + 1.5 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 15026 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 442.5-25 chr8 140296525 140296931 + 1.5 NA intron (NM_001160372, intron 11 of 22) MER45A|DNA|hAT-Tip100 161016 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 426.5-22 chr6 25508383 25508737 + 1.5 NA intron (NM_001173977, intron 17 of 36) intron (NM_001173977, intron 17 of 36) -143655 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 405-7 chr11 81191155 81191519 + 1.5 NA Intergenic L2c|LINE|L2 -428534 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 414-46 chr8 135393577 135393960 + 1.5 NA Intergenic Intergenic -63688 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 320.5-21 chr22 38723754 38724047 + 1.5 NA intron (NM_004286, intron 5 of 11) intron (NM_004286, intron 5 of 11) 17956 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 369.5 chr1 8319626 8320107 + 1.5 NA intron (NM_001080397, intron 1 of 8) AluSx1|SINE|Alu 1781 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 557-3 chr11 66818984 66819425 + 1.5 NA intron (NM_024650, intron 11 of 16) intron (NM_024650, intron 11 of 16) -24237 NM_005133 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 348-24 chr4 45361024 45361303 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -634529 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 392.5-18 chr19 47807174 47807453 + 1.5 NA Intergenic FLAM_C|SINE|Alu -3709 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 164-11 chr5 15855796 15855994 + 1.5 NA intron (NM_001278317, intron 2 of 3) MIRb|SINE|MIR -79287 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 167-6 chr17 43596479 43596699 + 1.5 NA Intergenic L2c|LINE|L2 -50249 NM_001261437 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 259-2 chr10 46046971 46047337 + 1.5 NA promoter-TSS (NM_002443) promoter-TSS (NM_002443) -885 NM_138634 4477 Hs.255462 NM_002443 ENSG00000263639 MSMB HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 microseminoprotein beta protein-coding 542-26 chr9 78263099 78263588 + 1.5 NA intron (NM_001349840, intron 12 of 15) intron (NM_001349840, intron 12 of 15) 27268 NM_001349838 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 342.5-7 chr11 72971547 72971823 + 1.5 NA intron (NM_014824, intron 8 of 19) MLT1E2|LTR|ERVL-MaLR 157274 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 316.5-17 chr2 155376464 155376703 + 1.5 NA Intergenic MIR3|SINE|MIR 677888 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 542.5-16 chr3 33057028 33057621 + 1.5 NA intron (NM_001135602, intron 3 of 12) MSTA|LTR|ERVL-MaLR 39508 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 446.5-23 chr6 135281160 135281546 + 1.5 NA Intergenic Intergenic 42193 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 157-3 chr13 61569834 61569939 + 1.5 NA Intergenic L1MB8|LINE|L1 -141940 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 168.5-30 chr7 111154062 111154253 + 1.5 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 63030 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 233.5-4 chr12 131702744 131703010 + 1.5 NA Intergenic L1M2a|LINE|L1 -8213 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 202.5-14 chr16 82725198 82725430 + 1.5 NA intron (NM_001220488, intron 2 of 14) MIR|SINE|MIR 36383 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 230.5-4 chr1 162199855 162200041 + 1.5 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 42841 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 251.5-14 chr2 12642836 12643131 + 1.5 NA Intergenic Intergenic -73889 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 337.5-26 chr6 41565453 41565795 + 1.5 NA intron (NM_001012427, intron 1 of 16) intron (NM_001012427, intron 1 of 16) -17003 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 412-26 chr5 96441344 96441714 + 1.5 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -8281 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 234-26 chr8 113268382 113268717 + 1.5 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 108603 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 267-41 chr5 61142932 61143124 + 1.5 NA intron (NM_174889, intron 3 of 3) intron (NM_174889, intron 3 of 3) -19288 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 264-30 chr9 21513182 21513495 + 1.5 NA intron (NR_152877, intron 1 of 3) A-rich|Low_complexity|Low_complexity -1153 NR_029505 407035 NR_029505 ENSG00000199177 MIR31 MIRN31|hsa-mir-31|miR-31 microRNA 31 ncRNA 324.5-30 chr4 152762821 152763039 + 1.5 NA Intergenic AluSz|SINE|Alu 16800 NM_145720 201798 Hs.301243 NM_145720 ENSG00000169989 TIGD4 - tigger transposable element derived 4 protein-coding 325-4 chr12 18225731 18225994 + 1.5 NA Intergenic Intergenic -35678 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 317.5-11 chr14 86174959 86175334 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 240468 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 213-7 chr14 78436625 78436858 + 1.5 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 33022 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 244-5 chr14 22255072 22255426 + 1.5 NA Intergenic Intergenic 177504 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 297-34 chr8 106110059 106110412 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 -49732 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 215-15 chr15 81462989 81463132 + 1.5 NA Intergenic L1M2|LINE|L1 -88847 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 276-10 chr10 24133140 24133434 + 1.5 NA intron (NM_001098500, intron 2 of 18) LTR78|LTR|ERV1 -75504 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 380.5-11 chr14 70049102 70049627 + 1.5 NA intron (NM_033262, intron 6 of 7) L1PA7|LINE|L1 30853 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 241.5-34 chr7 115728736 115729035 + 1.5 NA Intergenic Intergenic -147444 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 230-5 chr11 107850055 107850356 + 1.5 NA intron (NM_017515, intron 1 of 7) L1MEh|LINE|L1 8582 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 172-13 chr5 173471615 173471743 + 1.5 NA Intergenic Intergenic -107955 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 444-19 chr3 177568220 177568598 + 1.5 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 126488 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 160-8 chr13 70725590 70725716 + 1.5 NA Intergenic Intergenic -289488 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 258-24 chr6 37058607 37058780 + 1.5 NA Intergenic MER104|DNA|TcMar-Tc2 53038 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 157-5 chr19 3778246 3778364 + 1.5 NA exon (NM_002378, exon 14 of 14) exon (NM_002378, exon 14 of 14) -6077 NM_032753 84839 Hs.532691 NM_032753 ENSG00000173976 RAX2 ARMD6|CORD11|QRX|RAXL1 retina and anterior neural fold homeobox 2 protein-coding 257.5-9 chr10 63261916 63262206 + 1.5 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 7162 NM_001282948 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 489.5-19 chr7 90982010 90982437 + 1.5 NA intron (NM_012395, intron 8 of 13) intron (NM_012395, intron 8 of 13) 272407 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 363.5-2 chr10 99592144 99592688 + 1.5 NA Intergenic AluSz|SINE|Alu 28023 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 255.5-18 chr21 41955660 41955974 + 1.5 NA Intergenic Intergenic -1799 NM_015500 25966 Hs.473894 NM_015500 ENSG00000157617 C2CD2 C21orf25|C21orf258|TMEM24L C2 calcium dependent domain containing 2 protein-coding 121.5-19 chr7 78506193 78506298 + 1.5 NA intron (NM_001301128, intron 4 of 20) intron (NM_001301128, intron 4 of 20) 159003 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 252-18 chr3 46593893 46594095 + 1.5 NA Intergenic L1PB|LINE|L1 16206 NM_003212 6997 Hs.385870 NM_003212 ENSG00000241186 TDGF1 CR|CR-1|CRGF|CRIPTO teratocarcinoma-derived growth factor 1 protein-coding 294-12 chr12 46776929 46777282 + 1.5 NA intron (NM_018018, intron 12 of 16) intron (NM_018018, intron 12 of 16) 48892 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 243-25 chr3 7792772 7792946 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 223448 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 126-3 chr19 32029105 32029204 + 1.5 NA intron (NR_110674, intron 1 of 2) AluSz6|SINE|Alu 3292 NR_110674 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 530.5-8 chr2 213825217 213825769 + 1.5 NA intron (NR_047660, intron 9 of 14) L1MA3|LINE|L1 67426 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 183.5 chr1 10291254 10291396 + 1.5 NA intron (NM_001365953, intron 14 of 20) intron (NM_001365953, intron 14 of 20) -7641 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 373-26 chr2 215000549 215000798 + 1.5 NA intron (NR_103740, intron 23 of 54) intron (NR_103740, intron 23 of 54) 31413 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 324-5 chr1 216407940 216408285 + 1.5 NA intron (NM_206933, intron 3 of 71) intron (NM_206933, intron 3 of 71) 15284 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 336.5-20 chr5 144752819 144753090 + 1.5 NA Intergenic L2b|LINE|L2 547563 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 356-13 chr14 73206542 73206829 + 1.5 NA intron (NM_000021, intron 9 of 11) intron (NM_000021, intron 9 of 11) -30821 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 298.5-22 chr7 15014622 15014938 + 1.5 NA Intergenic Intergenic -39922 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 302.5-35 chr5 114285523 114285815 + 1.5 NA Intergenic Intergenic -76401 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 427.5-20 chr4 153750451 153750875 + 1.5 NA intron (NM_173662, intron 2 of 8) (AAAC)n|Simple_repeat|Simple_repeat 9361 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 380.5-21 chr4 40915570 40915994 + 1.5 NA intron (NM_173075, intron 9 of 16) intron (NM_173075, intron 9 of 16) -58590 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 327-37 chr5 127578405 127578804 + 1.5 NA Intergenic L1MA9|LINE|L1 60964 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 160.5-8 chr14 27726232 27726424 + 1.5 NA Intergenic Intergenic -53107 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 181-12 chr5 68418149 68418352 + 1.5 NA Intergenic Intergenic 125673 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 541.5-17 chr4 84702298 84702887 + 1.5 NA intron (NM_014991, intron 55 of 67) intron (NM_014991, intron 55 of 67) 119465 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 262.5-27 chr8 114401160 114401488 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -964385 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 442.5-7 chr14 70810424 70810878 + 1.5 NA Intergenic Intergenic -1138 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 170.5-26 chr9 17059249 17059397 + 1.5 NA Intergenic Intergenic -75717 NM_001365029 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 116.5-4 chr11 55920198 55920303 + 1.5 NA Intergenic MER52A|LTR|ERV1 -5668 NM_001001960 390148 Hs.554526 NM_001001960 ENSG00000187612 OR5W2 OR5W2P|OR5W3P olfactory receptor family 5 subfamily W member 2 protein-coding 169-18 chr9 119633545 119633709 + 1.5 NA Intergenic MIRb|SINE|MIR -264192 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 399-36 chr7 28351016 28351486 + 1.5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 51930 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 281.5-39 chr9 29480300 29480713 + 1.5 NA Intergenic Intergenic -266905 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 358.5-22 chr5 11609828 11610124 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -20910 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 273.5-6 chr14 44397964 44398172 + 1.5 NA Intergenic L1MA3|LINE|L1 109215 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 368-39 chr6 133301649 133302001 + 1.5 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 60326 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 172.5-21 chr8 122956807 122957048 + 1.5 NA intron (NM_001362797, intron 4 of 4) intron (NM_001362797, intron 4 of 4) 68845 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 440-10 chr16 1069372 1069774 + 1.5 NA intron (NR_027242, intron 2 of 3) intron (NR_027242, intron 2 of 3) -3183 NM_001172560 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 177-3 chr11 29514850 29515095 + 1.5 NA Intergenic L1MC4a|LINE|L1 -79441 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 245-28 chr4 48066759 48066994 + 1.5 NA 3' UTR (NM_003328, exon 15 of 15) 3' UTR (NM_003328, exon 15 of 15) 50104 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 519.5-6 chr2 53533949 53534459 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -233579 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 712.5-4 chr2 30573810 30574415 + 1.5 NA intron (NM_182551, intron 6 of 6) AluSz6|SINE|Alu 126866 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 328-7 chr11 56439519 56439956 + 1.5 NA Intergenic Intergenic -21505 NM_001004744 219479 Hs.553630 NM_001004744 ENSG00000279961 OR5R1 OR11-185|OR5R1P olfactory receptor family 5 subfamily R member 1 (gene/pseudogene) protein-coding 206-13 chr3 67736789 67736998 + 1.5 NA intron (NR_109992, intron 3 of 6) MIR|SINE|MIR 82196 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 254.5-19 chr17 74417534 74417917 + 1.5 NA Intergenic Intergenic -14363 NM_022036 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 180.5-16 chr4 41599730 41599987 + 1.5 NA intron (NM_001330786, intron 2 of 22) intron (NM_001330786, intron 2 of 22) -12851 NM_001330793 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 309.5-3 chr10 26938833 26939063 + 1.5 NA intron (NR_026795, intron 1 of 4) AluSx|SINE|Alu 3053 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 318.5-24 chr4 146968944 146969158 + 1.5 NA Intergenic Intergenic -23165 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 376.5-6 chr12 60152038 60152476 + 1.5 NA Intergenic Intergenic 462887 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 347.5-12 chr18 4240825 4241217 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -23581 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 251.5-10 chr14 40866654 40866924 + 1.5 NA Intergenic HERVL-int|LTR|ERVL -87922 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 324.5 chr1 83843127 83843507 + 1.5 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 17229 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 161.5-4 chr11 84699960 84700104 + 1.5 NA intron (NM_001351274, intron 5 of 26) MIRb|SINE|MIR 20910 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 280.5-6 chr10 120301356 120301615 + 1.5 NA Intergenic Intergenic 53738 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 199.5-3 chr10 27617159 27617322 + 1.5 NA Intergenic AluY|SINE|Alu 112936 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 199.5-30 chr5 12668981 12669239 + 1.5 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 1251 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 272.5-27 chr3 86685849 86686058 + 1.5 NA Intergenic L1MD|LINE|L1 204010 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 356.5-36 chr7 96920186 96920568 + 1.5 NA Intergenic Intergenic -85176 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 626-6 chr18 3364508 3365106 + 1.5 NA Intergenic HAL1|LINE|L1 -14248 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 218-33 chr7 67519952 67520195 + 1.5 NA Intergenic MER4D|LTR|ERV1 184097 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 264-12 chr18 2856993 2857264 + 1.5 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 10122 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 420.5-14 chr3 40185268 40185550 + 1.5 NA intron (NM_001284424, intron 9 of 15) intron (NM_001284424, intron 9 of 15) 85398 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 306-7 chr15 59688053 59688353 + 1.5 NA intron (NM_001368059, intron 1 of 8) intron (NM_001368059, intron 1 of 8) 723 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 228-9 chr2 235172957 235173141 + 1.5 NA Intergenic AluJo|SINE|Alu 145314 NM_001371306 196.5-3 chr11 101560586 101560758 + 1.5 NA intron (NM_004621, intron 1 of 12) intron (NM_004621, intron 1 of 12) 23335 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 195.5-15 chr19 56690316 56690518 + 1.5 NA Intergenic L1MB3|LINE|L1 -18660 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 230.5-47 chr6 163235922 163236172 + 1.5 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -44045 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 138-9 chr8 26836961 26837142 + 1.5 NA intron (NM_001322504, intron 1 of 1) MIRb|SINE|MIR 28604 NM_001322502 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 240.5-9 chr17 51199025 51199221 + 1.5 NA intron (NM_017643, intron 12 of 16) AluSq2|SINE|Alu 32401 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 307.5-9 chr12 32891419 32891777 + 1.5 NA intron (NM_001005242, intron 1 of 12) intron (NM_001005242, intron 1 of 12) 5248 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 285-22 chr5 104635503 104635753 + 1.5 NA Intergenic Intergenic -463846 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 491-19 chr4 42944653 42945089 + 1.5 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 51605 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 200-3 chr10 25746644 25746883 + 1.5 NA Intergenic Intergenic 95051 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 264-9 chr17 2371484 2371762 + 1.5 NA intron (NM_001346700, intron 12 of 22) MIRb|SINE|MIR 29437 NM_020310 4335 Hs.626579 NM_020310 ENSG00000070444 MNT MAD6|MXD6|ROX|bHLHd3 MAX network transcriptional repressor protein-coding 212.5-28 chr6 163121314 163121536 + 1.5 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -67264 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 462.5-25 chrX 38585780 38586322 + 1.5 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 24573 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 312.5-23 chr5 23209654 23210002 + 1.5 NA Intergenic Intergenic -297781 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 195-19 chr6 100564605 100564890 + 1.5 NA intron (NM_006828, intron 36 of 41) intron (NM_006828, intron 36 of 41) -101072 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 226-15 chr4 47086525 47086696 + 1.5 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 55043 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 229-24 chr5 85506422 85506605 + 1.5 NA Intergenic L1MEf|LINE|L1 -775931 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 386.5-9 chr14 54705654 54706063 + 1.5 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -48975 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 410-3 chr10 105506895 105507468 + 1.5 NA Intergenic Intergenic 313152 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 471.5-3 chr10 19049272 19049708 + 1.5 NA intron (NM_001142308, intron 1 of 39) intron (NM_001142308, intron 1 of 39) 689 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 162.5-18 chr6 42040520 42040706 + 1.5 NA intron (NM_001287434, intron 1 of 4) AluSg7|SINE|Alu 8281 NM_001136017 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 390.5-4 chr11 26526831 26527187 + 1.5 NA intron (NM_031418, intron 7 of 26) intron (NM_031418, intron 7 of 26) 45254 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 201.5-8 chr12 29214227 29214501 + 1.5 NA intron (NM_001271783, intron 1 of 11) L2a|LINE|L2 -9302 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 238.5-26 chr4 31892114 31892423 + 1.5 NA Intergenic LTR16B|LTR|ERVL -105111 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 363.5-4 chr11 74349803 74350153 + 1.5 NA intron (NM_173582, intron 6 of 13) L1MC5a|LINE|L1 -38338 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 359.5-13 chr14 55322677 55323087 + 1.5 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 50728 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 161.5-17 chr5 8569975 8570123 + 1.5 NA Intergenic Intergenic 109124 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 493.5-6 chr14 27573441 27573889 + 1.5 NA intron (NR_148991, intron 2 of 2) L1PA15|LINE|L1 -38923 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 324-11 chr13 104014640 104015009 + 1.5 NA Intergenic Intergenic 589624 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 336-41 chr4 52608432 52608739 + 1.5 NA intron (NM_001286768, intron 6 of 9) MER5B|DNA|hAT-Charlie 47954 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 140-5 chr17 64523838 64524025 + 1.5 NA intron (NM_138363, intron 8 of 19) intron (NM_138363, intron 8 of 19) 16954 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 250.5-11 chr14 81214551 81214781 + 1.5 NA intron (NM_001278940, intron 2 of 9) Charlie1|DNA|hAT-Charlie 6293 NM_015859 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 236-22 chr3 178281100 178281276 + 1.5 NA Intergenic L1MB3|LINE|L1 -138013 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 406.5-13 chr2 32245940 32246259 + 1.5 NA intron (NM_001302504, intron 3 of 7) AluSx|SINE|Alu 18787 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 405-11 chr15 75916660 75917033 + 1.5 NA intron (NM_012170, intron 4 of 5) L1ME4a|LINE|L1 12968 NR_037623 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 157.5-19 chr4 35409292 35409472 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 834557 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 231.5-30 chr6 115296237 115296489 + 1.5 NA Intergenic L1MEd|LINE|L1 347472 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 308.5-21 chr3 37893392 37893716 + 1.5 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) 31674 NM_001008392 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 208.5-2 chr1 200169979 200170147 + 1.5 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 127238 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 425.5-16 chr4 104954872 104955337 + 1.5 NA Intergenic Intergenic -190771 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 456-8 chr11 101455847 101456386 + 1.5 NA intron (NM_004621, intron 10 of 12) intron (NM_004621, intron 10 of 12) 63789 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 351-6 chr11 79268467 79268704 + 1.5 NA intron (NM_001098816, intron 2 of 33) Tigger17a|DNA|TcMar-Tigger 133524 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 574.5-9 chr2 67489321 67489828 + 1.5 NA Intergenic Intergenic 92241 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 251-9 chr15 35884918 35885259 + 1.5 NA Intergenic Intergenic -41768 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 391-10 chr19 50029302 50029766 + 1.5 NA intron (NM_001308424, intron 1 of 3) MER46C|DNA|TcMar-Tigger 3529 NM_015428 25888 Hs.440553 NM_015428 ENSG00000142528 ZNF473 ZFP100|ZN473 zinc finger protein 473 protein-coding 141.5-20 chr7 15343251 15343438 + 1.5 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 218671 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 351-37 chr5 123000553 123001085 + 1.5 NA intron (NM_014035, intron 4 of 6) intron (NM_014035, intron 4 of 6) 35906 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 378-7 chr13 21161541 21161863 + 1.5 NA intron (NM_145061, intron 5 of 8) intron (NM_145061, intron 5 of 8) 14850 NM_145061 221150 Hs.88523 NM_145061 ENSG00000165480 SKA3 C13orf3|RAMA1 spindle and kinetochore associated complex subunit 3 protein-coding 335.5-14 chr16 8604811 8605183 + 1.5 NA Intergenic MIRb|SINE|MIR -14486 NM_001290097 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 159.5-8 chr11 7391068 7391222 + 1.5 NA intron (NM_175733, intron 3 of 6) L1PA17|LINE|L1 74690 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 294-28 chr4 71694996 71695357 + 1.5 NA Intergenic Intergenic 88903 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 260-14 chr18 7873651 7873923 + 1.5 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 306471 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 466-6 chr10 56255832 56256199 + 1.5 NA Intergenic Intergenic 105244 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 430.5-2 chr1 117040494 117041047 + 1.5 NA intron (NR_110786, intron 2 of 3) intron (NR_110786, intron 2 of 3) 18720 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 254.5-14 chr14 72653265 72653495 + 1.5 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 136560 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 335.5-15 chr18 74352790 74353089 + 1.5 NA intron (NM_001174123, intron 11 of 13) intron (NM_001174123, intron 11 of 13) 37100 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 285-16 chr17 50300437 50300756 + 1.5 NA Intergenic AluSx3|SINE|Alu -12741 NR_125805 103752589 Hs.612913 NR_125805 ENSG00000251179 TMEM92-AS1 TCONS_00025237|lncRNA-508851 TMEM92 antisense RNA 1 ncRNA 214-6 chr13 81499882 81500099 + 1.5 NA Intergenic Intergenic -273007 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 239.5-24 chr8 126654816 126654998 + 1.5 NA Intergenic Intergenic -96429 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 476.5-5 chr13 31177445 31177838 + 1.5 NA Intergenic L2a|LINE|L2 -15253 NM_001286504 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 249-5 chr11 7345699 7345868 + 1.5 NA intron (NM_175733, intron 3 of 6) L2b|LINE|L2 93879 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 361.5-27 chr6 89922594 89922912 + 1.5 NA Intergenic AluSz6|SINE|Alu 28284 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 193.5-14 chr17 49730143 49730312 + 1.5 NA intron (NM_030802, intron 2 of 7) intron (NM_030802, intron 2 of 7) -22263 NM_001278784 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 326-31 chr5 164592873 164593259 + 1.5 NA Intergenic Intergenic 122787 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 532.5-16 chr5 155798918 155799539 + 1.5 NA Intergenic L1MEj|LINE|L1 -527529 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 305.5-31 chr6 47021253 47021647 + 1.5 NA intron (NM_153840, intron 6 of 14) AluSz|SINE|Alu 20882 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 211-30 chr8 139963009 139963204 + 1.5 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 137429 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 283.5-6 chr10 116541104 116541350 + 1.5 NA Intergenic Intergenic -4704 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 392-9 chr11 76847837 76848200 + 1.5 NA Intergenic AluJb|SINE|Alu -12900 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 287-32 chr4 162489777 162490127 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -325918 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 382-12 chr14 66935460 66935793 + 1.5 NA intron (NM_020806, intron 8 of 22) AluSx1|SINE|Alu -253814 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 139-6 chr4 124454261 124454392 + 1.5 NA Intergenic Intergenic 104108 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 325.5-13 chr17 43074425 43074676 + 1.5 NA intron (NR_027676, intron 13 of 22) intron (NR_027676, intron 13 of 22) 49319 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 302.5-27 chr22 25776625 25776931 + 1.5 NA intron (NM_001318245, intron 7 of 43) L1ME1|LINE|L1 34590 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 210-11 chr19 29867958 29868147 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -55605 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 399-24 chr22 33244987 33245328 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner 136628 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 220-10 chr14 71517869 71518039 + 1.5 NA intron (NM_001354286, intron 4 of 24) L1M5|LINE|L1 30093 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 229.5-17 chr2 102487228 102487482 + 1.5 NA intron (NM_001011552, intron 2 of 11) intron (NM_001011552, intron 2 of 11) 14129 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 248.5-3 chr1 168864418 168864743 + 1.5 NA Intergenic Intergenic 77639 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 280.5 chr1 111609096 111609389 + 1.5 NA promoter-TSS (NR_034126) promoter-TSS (NR_034126) -924 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 193-5 chr12 96279927 96280154 + 1.5 NA 3' UTR (NM_001170464, exon 16 of 16) 3' UTR (NM_001170464, exon 16 of 16) 24542 NM_001303511 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 318.5-22 chr4 65561370 65561634 + 1.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 107986 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 620-9 chr19 8196177 8196942 + 1.5 NA Intergenic AluJr|SINE|Alu -12811 NM_024552 79603 Hs.515111 NM_024552 ENSG00000090661 CERS4 LASS4|Trh1 ceramide synthase 4 protein-coding 299-7 chr11 102093786 102094102 + 1.5 NA Intergenic AluSp|SINE|Alu -16503 NM_001130145 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 157-7 chr2 95318661 95318852 + 1.5 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) 21409 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 222-9 chr14 71166835 71167054 + 1.5 NA Intergenic L1MB8|LINE|L1 -153532 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 169.5-14 chr4 182543796 182543933 + 1.5 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 300462 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 300.5-17 chr15 93715551 93715843 + 1.5 NA Intergenic LTR88a|LTR|Gypsy? -140863 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 251-37 chr8 109777629 109777848 + 1.5 NA Intergenic Intergenic -85947 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 568-3 chr10 84003674 84004284 + 1.5 NA Intergenic Intergenic -135530 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 138.5-11 chr22 26406812 26406904 + 1.5 NA Intergenic AluJr|SINE|Alu -22402 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 231-19 chr3 151561464 151561766 + 1.5 NA Intergenic L1ME4b|LINE|L1 4380 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 165.5-10 chr2 42164994 42165172 + 1.5 NA intron (NR_110584, intron 1 of 3) intron (NR_110584, intron 1 of 3) -4270 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 225-9 chr13 36370938 36371164 + 1.5 NA promoter-TSS (NM_001142294) promoter-TSS (NM_001142294) -871 NM_001142294 23111 Hs.440414 NM_015087 ENSG00000133104 SPART SPG20|TAHCCP1 spartin protein-coding 166.5-5 chr15 83007321 83007473 + 1.5 NA TTS (NM_001160113) TTS (NM_001160113) 4242 NM_001160114 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 316-43 chr7 70857941 70858173 + 1.5 NA Intergenic LTR49|LTR|ERV1 -274087 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 279.5-3 chr10 108870105 108870460 + 1.5 NA Intergenic Intergenic -800989 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 247.5-11 chr14 68640737 68641031 + 1.5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -12097 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 129-3 chr18 3193362 3193539 + 1.5 NA intron (NM_019856, intron 3 of 36) intron (NM_019856, intron 3 of 36) 26518 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 261-21 chr5 79660494 79660699 + 1.5 NA intron (NM_001349553, intron 13 of 16) intron (NM_001349553, intron 13 of 16) -29240 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 276.5-39 chr8 140009341 140009690 + 1.5 NA intron (NM_001160372, intron 18 of 22) L2a|LINE|L2 91020 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 149.5-16 chr6 150782924 150783102 + 1.5 NA intron (NM_001329803, intron 3 of 13) HAL1|LINE|L1 61914 NM_001329806 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 169.5-7 chr16 7079291 7079414 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -253493 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 465-7 chr1 235836845 235837372 + 1.5 NA intron (NR_102436, intron 1 of 3) MER3|DNA|hAT-Charlie 15952 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 264-19 chr5 17960541 17960753 + 1.5 NA Intergenic L2c|LINE|L2 153373 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 180.5-2 chr10 59877751 59877871 + 1.5 NA intron (NM_005436, intron 1 of 8) intron (NM_005436, intron 1 of 8) 28745 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 303.5 chr1 52797957 52798225 + 1.5 NA intron (NM_024646, intron 8 of 13) AluJb|SINE|Alu -44669 NM_001004339 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 286 chr1 49570764 49571029 + 1.5 NA intron (NR_136623, intron 2 of 12) L1PB4|LINE|L1 -98811 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 249-27 chr3 132734879 132735141 + 1.5 NA intron (NR_002811, intron 3 of 10) LTR49-int|LTR|ERV1 -12551 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 621.5-4 chr17 57891914 57892615 + 1.5 NA intron (NM_001271875, intron 1 of 10) MIRc|SINE|MIR 11125 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 382-20 chr18 39468432 39469036 + 1.5 NA intron (NR_024391, intron 3 of 3) L2a|LINE|L2 153441 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 199.5-33 chr7 3147677 3147955 + 1.5 NA intron (NR_126024, intron 3 of 3) intron (NR_126024, intron 3 of 3) 10757 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 263.5 chr1 35177863 35178101 + 1.5 NA intron (NR_136703, intron 10 of 11) intron (NR_136703, intron 10 of 11) 15163 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 350-19 chr20 45377823 45378288 + 1.5 NA intron (NM_014477, intron 1 of 4) intron (NM_014477, intron 1 of 4) 270 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 471-9 chr12 5064004 5064706 + 1.5 NA Intergenic Intergenic 20476 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 269-31 chr7 51524747 51524985 + 1.5 NA Intergenic L1MC4|LINE|L1 -131610 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 204-2 chr1 200506723 200506898 + 1.5 NA Intergenic Intergenic -96774 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 325.5-18 chr20 32921764 32922087 + 1.5 NA intron (NM_001143967, intron 20 of 26) AluSx|SINE|Alu 63002 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 173-18 chr8 133821289 133821430 + 1.5 NA Intergenic Intergenic -44007 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 144 chr10 82180736 82180886 + 1.5 NA intron (NM_001165973, intron 2 of 10) L1MB1|LINE|L1 52109 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 475.5-13 chr3 103884338 103884790 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -360448 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 258-5 chr13 82126193 82126378 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -899302 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 338-3 chr1 198832495 198832869 + 1.5 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 26300 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 255-9 chr19 14407848 14408181 + 1.5 NA TTS (NR_046366) TTS (NR_046366) 11327 NM_005804 10212 Hs.311609 NM_005804 ENSG00000123136 DDX39A BAT1|BAT1L|DDX39|DDXL|URH49 DExD-box helicase 39A protein-coding 302-18 chr3 100122958 100123281 + 1.5 NA intron (NM_001167924, intron 1 of 9) L2a|LINE|L2 8189 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 331-32 chr3 95720210 95720591 + 1.5 NA Intergenic Intergenic -37207 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 120 chr10 44847918 44848033 + 1.5 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -63341 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 249-16 chr2 219902180 219902351 + 1.5 NA Intergenic AluSx1|SINE|Alu 2624 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 438-29 chr8 53324398 53324869 + 1.5 NA Intergenic L1ME3G|LINE|L1 -72936 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 270.5-34 chr8 109870338 109870584 + 1.5 NA Intergenic Intergenic 105310 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 231.5-14 chr2 111625020 111625212 + 1.5 NA Intergenic Intergenic -129955 NR_136161 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 325.5-22 chr4 65463444 65463708 + 1.5 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 205912 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 262-5 chr10 41739444 41739703 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 628472 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 398-5 chr12 25161286 25161613 + 1.5 NA intron (NR_147909, intron 1 of 14) MIRc|SINE|MIR 33711 NR_147911 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 357-31 chr4 42327407 42327742 + 1.5 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 63694 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 336.5 chr1 21723609 21723890 + 1.5 NA intron (NM_001350164, intron 11 of 25) intron (NM_001350164, intron 11 of 25) -54392 NM_001350526 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 320-33 chr8 79992154 79992450 + 1.5 NA intron (NM_014018, intron 2 of 2) MLT1F1|LTR|ERVL-MaLR 37957 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 349.5-20 chr3 66257042 66257343 + 1.5 NA intron (NM_001350992, intron 2 of 8) intron (NM_001350992, intron 2 of 8) 36189 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 586.5-12 chr4 128739323 128739837 + 1.5 NA Intergenic Intergenic -70120 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 524.5-10 chr22 28298187 28298972 + 1.5 NA intron (NM_001145418, intron 3 of 22) AluJb|SINE|Alu -161290 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 499.5-12 chr3 1191589 1192047 + 1.5 NA intron (NM_001289080, intron 2 of 22) MER21C|LTR|ERVL 98794 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 288.5-6 chr1 222616204 222616704 + 1.5 NA Intergenic Intergenic -1643 NM_198551 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 158.5 chr1 59413338 59413443 + 1.5 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -102240 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 214.5-16 chr21 43578427 43578705 + 1.5 NA intron (NM_007031, intron 8 of 8) intron (NM_007031, intron 8 of 8) 13384 NM_017445 54145 NM_017445 ENSG00000234289 H2BFS H2B/s H2B histone family member S protein-coding 224-24 chr5 115844078 115844286 + 1.5 NA intron (NR_157087, intron 1 of 5) L2c|LINE|L2 1695 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 532-9 chr2 188156693 188157134 + 1.5 NA intron (NR_126396, intron 2 of 2) L1MD2|LINE|L1 130778 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 505.5-15 chr6 108593947 108594408 + 1.5 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 33260 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 306.5-26 chr4 66373223 66373591 + 1.5 NA Intergenic Intergenic 96583 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 283-8 chr10 81533966 81534190 + 1.5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -341116 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 358-6 chr10 43887210 43887473 + 1.5 NA intron (NR_038268, intron 4 of 4) L1MA9|LINE|L1 -21955 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 150.5-15 chr3 135543766 135543928 + 1.5 NA Intergenic L1MC3|LINE|L1 -421881 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 198-9 chr19 8721800 8721956 + 1.5 NA Intergenic Intergenic -9076 NM_001004699 284383 Hs.553675 NM_001004699 ENSG00000181733 OR2Z1 OR19-4|OR2Z2 olfactory receptor family 2 subfamily Z member 1 protein-coding 484.5-3 chr10 15755271 15755681 + 1.5 NA Intergenic Intergenic -35141 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 132.5-9 chr12 61362199 61362357 + 1.5 NA Intergenic L1MC4a|LINE|L1 830561 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 207-10 chr16 52170987 52171133 + 1.5 NA Intergenic MIR|SINE|MIR 85779 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 212.5-31 chr9 99042290 99042511 + 1.5 NA intron (NM_001855, intron 24 of 41) intron (NM_001855, intron 24 of 41) -62713 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 279.5-4 chr14 24957988 24958316 + 1.5 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 90848 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 153-5 chr12 24950181 24950353 + 1.5 NA Intergenic L2c|LINE|L2 -1166 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 237-27 chr8 49175510 49175698 + 1.5 NA Intergenic L1MA2|LINE|L1 103260 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 322.5-24 chr6 107795077 107795499 + 1.5 NA intron (NM_198081, intron 1 of 7) intron (NM_198081, intron 1 of 7) 29025 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 530.5-9 chr20 36916276 36916720 + 1.5 NA intron (NM_015474, intron 9 of 15) intron (NM_015474, intron 9 of 15) 35210 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 356.5-25 chr2 234640592 234640834 + 1.5 NA Intergenic Intergenic -41955 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 149.5 chr1 66860835 66860962 + 1.5 NA intron (NM_024763, intron 7 of 16) intron (NM_024763, intron 7 of 16) -59639 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 175-20 chrX 39982046 39982220 + 1.5 NA Intergenic Intergenic 115333 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 113 chr18 26010598 26010683 + 1.5 NA Intergenic Intergenic 79973 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 144.5-4 chr14 64763909 64764022 + 1.5 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 21721 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 327-27 chr2 171915283 171915652 + 1.5 NA Intergenic Intergenic -6958 NR_027862 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 474-6 chr13 113196063 113196446 + 1.5 NA intron (NM_001320656, intron 4 of 14) intron (NM_001320656, intron 4 of 14) -11939 NM_001278513 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 185.5-32 chr9 114270237 114270488 + 1.5 NA intron (NM_032888, intron 35 of 60) MIRb|SINE|MIR -52661 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 268.5-37 chr9 89068322 89068618 + 1.5 NA intron (NM_016848, intron 5 of 11) intron (NM_016848, intron 5 of 11) 77002 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 269-32 chr8 35587376 35587576 + 1.5 NA intron (NM_001322818, intron 3 of 16) intron (NM_001322818, intron 3 of 16) 43084 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 166-6 chr2 39395836 39396035 + 1.5 NA intron (NM_003618, intron 1 of 33) intron (NM_003618, intron 1 of 33) 41350 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 151-14 chr7 10097963 10098078 + 1.5 NA Intergenic Intergenic 463750 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 430-2 chr1 55797818 55798278 + 1.5 NA Intergenic L1MB3|LINE|L1 146915 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 489.5-11 chr2 214877631 214878133 + 1.5 NA intron (NR_110292, intron 2 of 3) L1ME3|LINE|L1 30935 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 143.5-10 chr17 48878127 48878231 + 1.5 NA intron (NR_135674, intron 3 of 3) intron (NR_135674, intron 3 of 3) -14608 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 616-9 chr4 74453502 74454000 + 1.5 NA intron (NM_001657, intron 5 of 5) AluSq2|SINE|Alu 8615 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 462.5-6 chr14 38840947 38841442 + 1.5 NA intron (NR_039982, intron 2 of 4) MER46C|DNA|TcMar-Tigger -41402 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 277-6 chr10 92744495 92744768 + 1.5 NA Intergenic Intergenic 54676 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 211.5-15 chr18 32783021 32783301 + 1.5 NA Intergenic Intergenic -10138 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 368.5-32 chrX 70202240 70202545 + 1.5 NA intron (NM_198512, intron 5 of 6) intron (NM_198512, intron 5 of 6) 24909 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 280-27 chr4 40411468 40411667 + 1.5 NA Intergenic LTR79|LTR|ERVL 76234 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 336.5-26 chr8 34337137 34337465 + 1.5 NA Intergenic L1PA15|LINE|L1 -446620 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 184.5-2 chr1 114457104 114457279 + 1.5 NA intron (NM_015906, intron 4 of 19) intron (NM_015906, intron 4 of 19) 54012 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 355-3 chr10 34262542 34263010 + 1.5 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -490096 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 481.5-11 chr3 105017832 105018240 + 1.5 NA Intergenic MIRb|SINE|MIR -348677 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 235.5-16 chr2 198278780 198279076 + 1.5 NA Intergenic Intergenic 96169 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 140.5 chr1 8687625 8687831 + 1.5 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 129912 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 353.5-16 chr2 208028893 208029259 + 1.5 NA Intergenic Intergenic -3549 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 474-36 chr8 56412705 56413251 + 1.5 NA Intergenic Intergenic -22268 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 397.5-24 chr4 120640294 120640885 + 1.5 NA Intergenic L2|LINE|L2 282277 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 207.5-28 chr5 10132983 10133121 + 1.5 NA Intergenic L1ME3G|LINE|L1 116836 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 211-5 chr12 68514010 68514179 + 1.5 NA Intergenic L1PA6|LINE|L1 -62610 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 262.5-10 chr2 2898050 2898507 + 1.5 NA intron (NR_110228, intron 5 of 6) intron (NR_110228, intron 5 of 6) 227748 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 204-14 chr2 205988181 205988335 + 1.5 NA Intergenic MIR|SINE|MIR 97916 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 252.5-12 chr17 63542998 63543350 + 1.5 NA intron (NM_030779, intron 9 of 13) intron (NM_030779, intron 9 of 13) -7303 NR_073585 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 518.5-15 chr3 135536193 135536684 + 1.5 NA Intergenic L1MEc|LINE|L1 -429290 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 542-19 chr6 60643987 60644416 + 1.5 NA Intergenic LTR33|LTR|ERVL -929929 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 215-18 chr2 214226760 214226980 + 1.5 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -184184 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 205.5-13 chr21 28739696 28739909 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie 145565 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 173-5 chr18 5407361 5407560 + 1.5 NA intron (NM_001281535, intron 15 of 21) intron (NM_001281535, intron 15 of 21) -110407 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 273.5-12 chr17 72067832 72068062 + 1.5 NA Intergenic Intergenic -4386 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 278.5-27 chr8 81846936 81847175 + 1.5 NA Intergenic HERV4_I-int|LTR|ERV1 -4769 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 210 chr1 166026399 166026586 + 1.5 NA Intergenic MIRc|SINE|MIR 118571 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 178.5-8 chr2 134506516 134506712 + 1.5 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 212386 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 415.5-12 chr4 81945971 81946404 + 1.5 NA Intergenic Intergenic 427804 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 247-9 chr18 59987273 59987569 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 87425 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 327.5-19 chr5 64840740 64841029 + 1.5 NA intron (NM_005869, intron 10 of 13) L2|LINE|L2 71954 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 128.5-9 chr13 36928833 36928979 + 1.5 NA Intergenic Intergenic -8634 NM_001127217 4093 Hs.123119 NM_005905 ENSG00000120693 SMAD9 MADH6|MADH9|PPH2|SMAD8|SMAD8/9|SMAD8A|SMAD8B SMAD family member 9 protein-coding 274-22 chr3 190026866 190027195 + 1.5 NA intron (NM_001134418, intron 1 of 14) MIR|SINE|MIR 93867 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 366.5-4 chr11 61440013 61440335 + 1.5 NA intron (NM_017841, intron 3 of 3) AluSz6|SINE|Alu 10049 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 221-25 chr7 36910922 36911158 + 1.5 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 8392 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 265-15 chr16 54530853 54531082 + 1.5 NA Intergenic Intergenic -160268 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 281.5-36 chr8 3674163 3674453 + 1.5 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -945857 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 313-35 chr7 126689133 126689507 + 1.5 NA intron (NM_001371085, intron 7 of 10) MIRb|SINE|MIR 368864 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 141-10 chr8 65727600 65727804 + 1.5 NA intron (NM_001242318, intron 7 of 12) intron (NM_001242318, intron 7 of 12) 57829 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 250-34 chr5 37643964 37644310 + 1.5 NA intron (NM_001345998, intron 10 of 17) L1MA3|LINE|L1 190685 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 212-8 chr15 26600442 26600768 + 1.5 NA intron (NM_001191320, intron 2 of 6) L1M3b|LINE|L1 28485 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 288.5-32 chr4 42230045 42230414 + 1.5 NA Intergenic Intergenic -77574 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 351-44 chr9 131412728 131413021 + 1.5 NA Intergenic AluJr|SINE|Alu -17216 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 256-3 chr12 15200705 15201046 + 1.5 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 20542 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 413.5-10 chr19 32321430 32321826 + 1.5 NA Intergenic AluSz6|SINE|Alu -23982 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 317.5-41 chr8 144774131 144774537 + 1.5 NA exon (NM_001286770, exon 5 of 5) exon (NM_001286770, exon 5 of 5) 13011 NM_001286770 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 445-18 chr3 123739022 123739594 + 1.5 NA intron (NM_001321309, intron 5 of 32) MLT1J2|LTR|ERVL-MaLR 49664 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 373.5-24 chr6 49715519 49715894 + 1.5 NA Intergenic Intergenic -2116 NM_001261822 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 344.5-6 chr11 111770504 111770866 + 1.5 NA Intergenic AluJr|SINE|Alu -4296 NM_001177563 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 371.5-12 chr17 49119741 49120174 + 1.5 NA Intergenic Intergenic -12503 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 406.5 chr1 59454823 59455189 + 1.5 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) -60624 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 342.5-26 chr4 164307483 164307836 + 1.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 75596 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 269.5-28 chr22 29159964 29160313 + 1.5 NA intron (NM_032045, intron 9 of 9) L1PA16|LINE|L1 -45758 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 290.5 chr1 22929299 22929762 + 1.5 NA Intergenic AluSx|SINE|Alu 43336 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 241.5-23 chr3 123838179 123838389 + 1.5 NA intron (NM_001321309, intron 2 of 32) L1MEc|LINE|L1 46048 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 305.5-35 chr6 152003337 152003570 + 1.5 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 164834 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 128.5-19 chr21 28078029 28078195 + 1.5 NA intron (NR_126010, intron 1 of 4) intron (NR_126010, intron 1 of 4) -12291 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 258-16 chr2 187745509 187745721 + 1.5 NA Intergenic AluJr|SINE|Alu -191110 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 208.5-13 chr2 147253871 147254097 + 1.5 NA Intergenic Intergenic -590533 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 228.5-8 chr11 88095202 88095444 + 1.5 NA Intergenic L2a|LINE|L2 80120 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 512-17 chr8 78120205 78120740 + 1.5 NA Intergenic Intergenic -395868 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 121.5-8 chr18 57486185 57486352 + 1.5 NA 3' UTR (NM_004852, exon 2 of 2) 3' UTR (NM_004852, exon 2 of 2) 50894 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 345.5-18 chr2 88606469 88606935 + 1.5 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 18227 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 381.5-17 chr4 112687746 112688325 + 1.5 NA Intergenic AluJr|SINE|Alu -17983 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 227-33 chr7 5491088 5491277 + 1.5 NA intron (NM_001363442, intron 4 of 4) intron (NM_001363442, intron 4 of 4) 4735 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 394-10 chr17 34678797 34679274 + 1.5 NA Intergenic AluJr4|SINE|Alu 98286 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 307-18 chr2 195975619 195975894 + 1.5 NA intron (NM_018897, intron 15 of 64) L1MA3|LINE|L1 93081 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 229-31 chr7 125816458 125816657 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie -552266 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 432-29 chr9 80334254 80334838 + 1.5 NA Intergenic L1MC1|LINE|L1 359523 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 174-10 chr2 4107392 4107585 + 1.5 NA Intergenic Intergenic 133327 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 307-37 chrX 56506340 56506721 + 1.5 NA Intergenic L1PBa1|LINE|L1 -57063 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 229.5-5 chr10 56137901 56138139 + 1.5 NA Intergenic AluSx3|SINE|Alu 223239 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 333-36 chr7 55846773 55847226 + 1.5 NA intron (NM_207366, intron 2 of 9) AluSg|SINE|Alu 15753 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 315-15 chr2 179536181 179536495 + 1.5 NA intron (NR_104234, intron 4 of 12) intron (NR_104234, intron 4 of 12) 26250 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 356.5-5 chr10 29938880 29939118 + 1.5 NA Intergenic L1M5|LINE|L1 120587 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 227.5-12 chr20 8364841 8365074 + 1.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 116253 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 302.5-33 chr4 87671034 87671315 + 1.5 NA Intergenic Intergenic 20894 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 239-16 chr20 54384398 54384607 + 1.5 NA Intergenic Intergenic -91091 NM_018431 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 236.5-14 chr15 89679458 89679672 + 1.5 NA promoter-TSS (NM_002666) promoter-TSS (NM_002666) -198 NM_001145311 5346 Hs.103253 NM_002666 ENSG00000166819 PLIN1 FPLD4|PERI|PLIN perilipin 1 protein-coding 219-21 chr2 205366235 205366586 + 1.5 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -316090 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 359 chr1 30933704 30934001 + 1.5 NA intron (NM_001020658, intron 21 of 21) intron (NM_001020658, intron 21 of 21) 1924 NR_004054 692234 NR_004054 SNORD103A U103 small nucleolar RNA, C/D box 103A snoRNA 320.5-22 chr3 117440789 117441197 + 1.5 NA Intergenic L3|LINE|CR1 249932 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 488-8 chr20 4787763 4788148 + 1.5 NA intron (NM_014737, intron 9 of 11) intron (NM_014737, intron 9 of 11) 27168 NM_170774 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 254.5-4 chr10 85936022 85936252 + 1.5 NA intron (NM_017551, intron 4 of 15) L2c|LINE|L2 328651 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 392-8 chr11 41851705 41851990 + 1.5 NA Intergenic Intergenic 137279 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 305-20 chr19 30223573 30223871 + 1.5 NA Intergenic Intergenic -148662 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 298-7 chr13 50132149 50132410 + 1.5 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) -6738 NR_152566 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 191 chr1 228248441 228248687 + 1.5 NA intron (NM_052843, intron 13 of 80) L1M5|LINE|L1 -34900 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 206.5-31 chr4 160373178 160373344 + 1.5 NA Intergenic LTR50|LTR|ERVL -595477 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 231.5-2 chr10 90456640 90456885 + 1.5 NA intron (NR_110657, intron 2 of 6) LTR47A|LTR|ERVL 84043 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 203-16 chr22 49559330 49559465 + 1.5 NA intron (NR_110523, intron 1 of 4) L1MEc|LINE|L1 -15931 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 232.5-10 chr11 31972388 31972651 + 1.5 NA Intergenic MIR|SINE|MIR 68799 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 229.5-34 chr5 133496182 133496458 + 1.5 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -68614 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 305.5-18 chr2 191532118 191532540 + 1.5 NA Intergenic Intergenic -145743 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 423-15 chr16 87954381 87954888 + 1.5 NA intron (NM_001173539, intron 1 of 12) intron (NM_001173539, intron 1 of 12) 3200 NM_001173541 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 318.5-10 chr15 86538639 86538959 + 1.5 NA intron (NM_152336, intron 19 of 24) intron (NM_152336, intron 19 of 24) -221831 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 235-8 chr12 3989904 3990130 + 1.5 NA Intergenic Intergenic -116569 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 192-24 chr6 145746587 145746752 + 1.5 NA intron (NR_038246, intron 1 of 2) intron (NR_038246, intron 1 of 2) -10646 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 255.5-17 chr2 138864517 138864761 + 1.5 NA Intergenic AluSx|SINE|Alu -32685 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 418-30 chr8 98281820 98282286 + 1.5 NA intron (NR_135747, intron 1 of 11) MLT1D|LTR|ERVL-MaLR 12182 NR_135747 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 197.5-30 chr5 4719888 4720118 + 1.5 NA Intergenic L1M5|LINE|L1 -53478 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 357-35 chr5 132072300 132072837 + 1.5 NA Intergenic Intergenic -1221 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 CSF|GMCSF colony stimulating factor 2 protein-coding 160.5-20 chr4 142760232 142760472 + 1.5 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 86183 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 250.5-24 chr21 30377963 30378222 + 1.5 NA Intergenic L1ME1|LINE|L1 -2714 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 178-14 chr3 179198814 179198960 + 1.5 NA exon (NM_006218, exon 2 of 21) exon (NM_006218, exon 2 of 21) 50530 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 301.5-3 chr13 30867207 30867557 + 1.5 NA Intergenic MER102c|DNA|hAT-Charlie -15180 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 144-4 chr17 39106503 39106745 + 1.5 NA intron (NM_020405, intron 6 of 13) intron (NM_020405, intron 6 of 13) 45013 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 372-37 chr8 34838505 34839029 + 1.5 NA intron (NR_125746, intron 3 of 3) L2b|LINE|L2 54846 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 554-14 chr2 209335644 209336253 + 1.5 NA Intergenic Intergenic -88099 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 278-14 chr18 8812001 8812252 + 1.5 NA intron (NM_015210, intron 11 of 16) L1MEf|LINE|L1 94745 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 240-7 chr10 32266111 32266325 + 1.5 NA Intergenic Intergenic 80940 NM_001272019 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 192.5-29 chr6 145123915 145124066 + 1.5 NA Intergenic L2c|LINE|L2 562887 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 315-35 chr7 11593507 11593946 + 1.5 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 238472 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 313.5-24 chr21 19409206 19409437 + 1.5 NA Intergenic Tigger3d|DNA|TcMar-Tigger 490434 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 225-4 chr10 33987776 33987950 + 1.5 NA Intergenic Intergenic -215183 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 224-28 chr7 5524646 5524935 + 1.5 NA non-coding (NR_126168, exon 4 of 4) non-coding (NR_126168, exon 4 of 4) 5811 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 217.5-8 chr11 114101438 114101618 + 1.5 NA intron (NM_006006, intron 2 of 6) MIRb|SINE|MIR 38317 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 140-7 chr2 45014733 45014848 + 1.5 NA Intergenic Intergenic -5338 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 178-18 chr8 82879208 82879345 + 1.5 NA Intergenic Intergenic -32828 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 460.5-33 chr8 38072298 38072687 + 1.5 NA Intergenic Intergenic -33001 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 257.5-4 chr1 106315396 106315787 + 1.5 NA Intergenic L1MA4|LINE|L1 -287338 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 481-21 chr8 140540017 140540544 + 1.5 NA intron (NM_001164623, intron 15 of 17) intron (NM_001164623, intron 15 of 17) 28284 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 223-19 chr2 66483834 66484046 + 1.5 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -43610 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 337.5-14 chr2 46344833 46345099 + 1.5 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 47559 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 155-11 chr7 16675637 16675821 + 1.5 NA intron (NM_001362717, intron 3 of 11) intron (NM_001362717, intron 3 of 11) 14515 NM_001362719 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 344-36 chr9 123768794 123769281 + 1.5 NA intron (NM_001352968, intron 3 of 18) intron (NM_001352968, intron 3 of 18) 161089 NM_001352968 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 285.5-9 chr2 59924901 59925285 + 1.5 NA Intergenic Intergenic 457943 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 305.5-41 chr8 77970455 77970717 + 1.5 NA Intergenic Intergenic 519889 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 145.5-28 chr7 128115690 128115854 + 1.5 NA Intergenic Intergenic 33911 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 292.5-3 chr1 196285691 196285928 + 1.5 NA intron (NM_001287820, intron 20 of 26) intron (NM_001287820, intron 20 of 26) -197094 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 205.5-21 chr5 96264561 96264779 + 1.5 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 167489 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 335-23 chr19 40115941 40116265 + 1.5 NA Intergenic MER65A|LTR|ERV1 -25160 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 176.5-18 chr3 126155043 126155229 + 1.5 NA intron (NR_072979, intron 5 of 20) intron (NR_072979, intron 5 of 20) -24929 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 230.5-35 chr4 71737369 71737569 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 46610 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 184-5 chr20 61471950 61472186 + 1.5 NA intron (NM_001794, intron 2 of 15) L1MA3|LINE|L1 -27353 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 123-3 chr13 41358853 41358979 + 1.5 NA TTS (NM_018527) TTS (NM_018527) -46878 NM_001354076 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 223.5-27 chr3 116102804 116103136 + 1.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -197844 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 188-2 chr10 62598908 62599138 + 1.5 NA intron (NM_199452, intron 1 of 6) L1ME1|LINE|L1 78575 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 335-31 chr2 198665975 198666362 + 1.5 NA Intergenic L2a|LINE|L2 -291071 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 404-33 chr7 67376702 67377189 + 1.5 NA Intergenic Intergenic 40969 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 197-6 chr1 207229359 207229524 + 1.5 NA Intergenic Intergenic -92237 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 174.5-19 chr21 35261978 35262171 + 1.5 NA Intergenic Intergenic -212776 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 171.5-29 chr8 84276918 84277056 + 1.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 92321 NM_001354321 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 198.5-25 chr7 90395925 90396137 + 1.5 NA promoter-TSS (NR_102424) promoter-TSS (NR_102424) -261 NR_102424 101409256 NR_102424 LOC101409256 - cell division cycle 42 pseudogene pseudo 146-7 chr2 226826747 226826868 + 1.5 NA intron (NM_001349069, intron 3 of 8) AluSc8|SINE|Alu -9247 NM_001167608 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 168.5-23 chr5 10427263 10427434 + 1.5 NA intron (NM_001270660, intron 23 of 24) L2|LINE|L2 14503 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 431.5-8 chr14 81779867 81780201 + 1.5 NA Intergenic Intergenic -36896 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 313.5-31 chr4 188977723 188977955 + 1.5 NA Intergenic Intergenic 201182 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 284.5-39 chr7 26216835 26217141 + 1.5 NA Intergenic FRAM|SINE|Alu 15243 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 365-18 chr3 102279741 102280214 + 1.5 NA Intergenic L1P4a|LINE|L1 116272 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 472-3 chr12 87786142 87786874 + 1.5 NA intron (NR_149056, intron 2 of 3) L1MEi|LINE|L1 -1797 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 220-9 chr14 57981615 57981870 + 1.5 NA Intergenic Intergenic -115650 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 248-11 chr2 105496115 105496394 + 1.5 NA Intergenic Intergenic -57741 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 150.5-2 chr10 39126331 39126454 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 429796 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 376.5-28 chr7 40079554 40079976 + 1.5 NA intron (NM_003718, intron 11 of 13) intron (NM_003718, intron 11 of 13) 54857 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 491.5-18 chr5 161403834 161404177 + 1.5 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 144119 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 384.5-17 chr21 21668130 21668434 + 1.5 NA Intergenic Intergenic 69037 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 214-5 chr13 43422364 43422619 + 1.5 NA intron (NM_001347963, intron 2 of 15) intron (NM_001347963, intron 2 of 15) -26361 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 275.5-30 chr6 159467180 159467496 + 1.5 NA Intergenic Intergenic 83807 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 165-5 chr2 199340427 199340615 + 1.5 NA intron (NM_001172509, intron 7 of 10) intron (NM_001172509, intron 7 of 10) 117418 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 529.5-4 chr11 16216710 16217311 + 1.5 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 139536 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 137-3 chr2 184394854 184394973 + 1.5 NA Intergenic Intergenic 15938 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 357.5-18 chr6 162239973 162240380 + 1.5 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -486956 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 212-4 chr11 85242054 85242338 + 1.5 NA intron (NM_001142699, intron 4 of 27) L1MEh|LINE|L1 -318775 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 489-2 chr10 44916639 44916978 + 1.5 NA intron (NM_001345926, intron 1 of 3) intron (NM_001345926, intron 1 of 3) 5471 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 171.5-30 chr8 119966353 119966551 + 1.5 NA intron (NM_022783, intron 4 of 8) MER39B|LTR|ERV1 92730 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 156-10 chr17 71025331 71025526 + 1.5 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat 176751 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 483.5-13 chr5 44974362 44974984 + 1.5 NA Intergenic AluSc|SINE|Alu 165726 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 196-8 chr16 77339623 77339891 + 1.5 NA intron (NM_199355, intron 11 of 22) intron (NM_199355, intron 11 of 22) 95277 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 296-7 chr11 80742979 80743282 + 1.5 NA Intergenic MER39|LTR|ERV1 19673 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 385-2 chr1 200670052 200670311 + 1.5 NA promoter-TSS (NM_001320181) promoter-TSS (NM_001320181) -183 NM_001349801 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 223.5-22 chr20 9270423 9270780 + 1.5 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -37199 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 249-25 chr3 73121573 73121829 + 1.5 NA Intergenic MER66B|LTR|ERV1 60042 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 335.5-7 chr12 34517720 34518184 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 495456 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 199.5-21 chr2 222706928 222707110 + 1.5 NA intron (NM_058165, intron 5 of 5) AluSz|SINE|Alu 35361 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 546-14 chr7 8271247 8271891 + 1.5 NA intron (NR_125740, intron 3 of 5) L1MEc|LINE|L1 -8957 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 269-28 chr5 136159194 136159522 + 1.5 NA intron (NM_001001420, intron 2 of 6) HAL1|LINE|L1 -24468 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 224.5-12 chr17 74754348 74754633 + 1.5 NA intron (NM_004252, intron 1 of 5) AluSx1|SINE|Alu 5862 NM_004252 9368 Hs.724482 NM_004252 ENSG00000109062 SLC9A3R1 EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 SLC9A3 regulator 1 protein-coding 277.5-3 chr1 145796538 145796766 + 1.5 NA intron (NM_014455, intron 1 of 8) AluJb|SINE|Alu 27443 NM_014455 27246 Hs.523550 NM_014455 ENSG00000265491 RNF115 BCA2|ZNF364 ring finger protein 115 protein-coding 318-45 chr8 125773602 125773946 + 1.5 NA Intergenic Intergenic 177423 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 206-22 chr7 30033376 30033583 + 1.5 NA intron (NM_001363473, intron 1 of 12) L1MB7|LINE|L1 5067 NM_001350974 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 408-23 chr2 95499351 95499793 + 1.5 NA Intergenic Intergenic -14841 NM_001164464 653192 Hs.723811 NM_001164464 ENSG00000144010 TRIM43B - tripartite motif containing 43B protein-coding 155-4 chr18 62352640 62352821 + 1.5 NA intron (NM_001270949, intron 3 of 8) intron (NM_001270949, intron 3 of 8) 27420 NM_001270951 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 353-15 chr16 14306348 14306686 + 1.5 NA intron (NR_132983, intron 1 of 1) intron (NR_132983, intron 1 of 1) 2550 NR_030177 574455 NR_030177 ENSG00000207639 MIR193B MIRN193B|mir-193b microRNA 193b ncRNA 261-29 chr8 117707737 117708076 + 1.5 NA Intergenic Intergenic 187193 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 152.5-7 chr10 69090731 69090897 + 1.5 NA intron (NM_001321054, intron 1 of 1) intron (NM_001321054, intron 1 of 1) 2711 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 193.5-2 chr1 179544503 179544666 + 1.5 NA intron (NR_073544, intron 25 of 25) AluSz6|SINE|Alu 31364 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 261-2 chr10 31679907 31680221 + 1.5 NA Intergenic Intergenic 228862 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 189-26 chr9 77833813 77833985 + 1.5 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) -185577 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 417.5-15 chr4 56406189 56406563 + 1.5 NA intron (NR_156493, intron 3 of 10) intron (NR_156493, intron 3 of 10) -18868 NM_001286669 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 272-6 chr11 91388624 91388815 + 1.5 NA Intergenic Intergenic -519517 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 401-19 chr18 56621562 56622108 + 1.5 NA intron (NM_004786, intron 3 of 7) AluSq|SINE|Alu 16757 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 219.5-14 chr17 71335342 71335677 + 1.5 NA Intergenic Intergenic -133330 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 307.5-10 chr12 105053020 105053345 + 1.5 NA intron (NR_027752, intron 10 of 22) intron (NR_027752, intron 10 of 22) 31276 NR_027752 160428 Hs.42572 NM_001034173 ENSG00000136010 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family member L2 protein-coding 346.5-35 chr9 108900208 108900501 + 1.5 NA exon (NM_003640, exon 19 of 37) exon (NM_003640, exon 19 of 37) 33770 NM_001318360 8518 Hs.494738 NM_003640 ENSG00000070061 ELP1 DYS|FD|IKAP|IKBKAP|IKI3|TOT1 elongator complex protein 1 protein-coding 225.5-32 chr5 118378649 118378845 + 1.5 NA intron (NR_104610, intron 9 of 9) Plat_L3|LINE|CR1 96173 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 223.5-8 chr11 114375595 114375835 + 1.5 NA intron (NR_120567, intron 2 of 2) intron (NR_120567, intron 2 of 2) 4324 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 355.5-4 chr12 6179881 6180210 + 1.5 NA Intergenic L1MB3|LINE|L1 -19901 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 368.5-20 chr20 45940122 45940594 + 1.5 NA intron (NM_022104, intron 4 of 16) MIRb|SINE|MIR 5675 NM_022104 63935 Hs.472856 NM_022104 ENSG00000100982 PCIF1 C20orf67|CAPAM|PPP1R121|hCAPAM|hPCIF1 PDX1 C-terminal inhibiting factor 1 protein-coding 508.5-4 chr12 120298737 120299248 + 1.5 NA Intergenic AluY|SINE|Alu -3329 NM_012240 23409 Hs.50861 NM_012240 ENSG00000089163 SIRT4 SIR2L4 sirtuin 4 protein-coding 425.5-19 chr7 135008446 135008890 + 1.5 NA intron (NR_144293, intron 3 of 10) L1MB7|LINE|L1 22160 NM_001367815 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 358-22 chr18 8983058 8983521 + 1.5 NA Intergenic Intergenic -119410 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 430-18 chr3 76221530 76222154 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -436293 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 200.5 chr1 206015791 206015987 + 1.5 NA intron (NM_148964, intron 5 of 7) intron (NM_148964, intron 5 of 7) 8006 NM_001910 1510 Hs.644082 NM_001910 ENSG00000196188 CTSE CATE cathepsin E protein-coding 229-19 chr3 131164884 131165180 + 1.5 NA intron (NM_001353043, intron 11 of 17) intron (NM_001353043, intron 11 of 17) 137304 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 257-47 chr8 133216873 133217092 + 1.5 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 25943 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 472-24 chr8 133022032 133022498 + 1.5 NA intron (NM_003235, intron 40 of 47) intron (NM_003235, intron 40 of 47) 24316 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 483.5-17 chr6 157085189 157085618 + 1.5 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 48976 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 293-12 chr17 426250 426522 + 1.5 NA Intergenic MIR|SINE|MIR -12363 NR_136407 105371430 Hs.616427 NR_136407 ENSG00000241525 LOC105371430 - uncharacterized LOC105371430 ncRNA 286.5-14 chr17 67517439 67517907 + 1.5 NA intron (NM_181671, intron 1 of 9) L1MB7|LINE|L1 -46088 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 331-6 chr10 1883218 1883649 + 1.5 NA Intergenic Intergenic 130915 NR_040253 282980 Hs.576810 NR_040253 ENSG00000234962 LINC00700 - long intergenic non-protein coding RNA 700 ncRNA 191.5-22 chr7 98128090 98128298 + 1.5 NA intron (NM_014916, intron 1 of 13) intron (NM_014916, intron 1 of 13) 21332 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 385.5-30 chr22 24720970 24721558 + 1.5 NA intron (NM_001008496, intron 19 of 20) L1MEd|LINE|L1 -43237 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 161-2 chr1 174673112 174673267 + 1.5 NA intron (NM_001366446, intron 14 of 25) A-rich|Low_complexity|Low_complexity -27350 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 401-34 chr8 128543571 128543928 + 1.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 20930 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 377-31 chr8 86379439 86379858 + 1.5 NA intron (NM_007013, intron 3 of 24) intron (NM_007013, intron 3 of 24) 37101 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 242-7 chr12 122965494 122965791 + 1.5 NA intron (NM_001243014, intron 1 of 11) intron (NM_001243014, intron 1 of 11) 821 NM_001243014 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 346-6 chr1 234705733 234706040 + 1.5 NA Intergenic Intergenic -18156 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 148-4 chr20 47067191 47067318 + 1.5 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -99713 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 523.5-5 chr14 34388446 34388999 + 1.5 NA Intergenic Intergenic 73518 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 391-28 chr6 61609788 61610331 + 1.5 NA intron (NR_146870, intron 13 of 15) AluY|SINE|Alu 35929 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 326.5-20 chr2 156001398 156001672 + 1.5 NA Intergenic Intergenic 253396 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 259.5-18 chr2 2474669 2474927 + 1.5 NA Intergenic Intergenic -143523 NM_001329851 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 423.5-29 chr8 37827461 37828026 + 1.5 NA intron (NM_032777, intron 2 of 18) intron (NM_032777, intron 2 of 18) 22118 NM_018310 55290 Hs.709301 NM_018310 ENSG00000104221 BRF2 BRFU|TFIIIB50 BRF2 RNA polymerase III transcription initiation factor subunit protein-coding 317.5-10 chr14 78210356 78210806 + 1.5 NA intron (NR_073547, intron 1 of 20) L1ME1|LINE|L1 40208 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 128.5-10 chr13 47272163 47272280 + 1.5 NA Intergenic L1M2|LINE|L1 -375145 NM_000621 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 181-3 chr1 213471986 213472279 + 1.5 NA Intergenic Intergenic 420891 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 343.5-24 chr3 18585309 18585803 + 1.5 NA Intergenic Intergenic -139964 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 450.5-3 chr11 101148491 101148861 + 1.5 NA intron (NR_073144, intron 4 of 4) L1MC5a|LINE|L1 -18863 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 214.5-11 chr17 54103490 54103756 + 1.5 NA Intergenic L1PA16|LINE|L1 280696 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 185.5-10 chr16 80388714 80388901 + 1.5 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -151927 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 469.5-9 chr16 62594431 62595081 + 1.5 NA Intergenic Intergenic -558318 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 487 chr1 3292329 3292796 + 1.5 NA intron (NM_022114, intron 3 of 16) intron (NM_022114, intron 3 of 16) -162103 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 220-5 chr10 129981023 129981279 + 1.5 NA Intergenic L1MD1|LINE|L1 -16877 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 352-21 chr2 173585540 173585801 + 1.5 NA Intergenic Intergenic 230798 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 120-5 chr8 133861684 133861774 + 1.5 NA Intergenic Intergenic -24767 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 177.5-18 chr3 123341294 123341471 + 1.5 NA intron (NM_183357, intron 3 of 20) L1MB3|LINE|L1 74960 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 363-21 chr20 51622942 51623404 + 1.5 NA intron (NM_006045, intron 18 of 27) intron (NM_006045, intron 18 of 27) -60334 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 161-6 chr14 89143222 89143395 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X 273925 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 205-28 chr8 15477278 15477574 + 1.5 NA Intergenic Intergenic -62661 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 325.5-11 chr15 100182767 100183202 + 1.5 NA intron (NM_139057, intron 8 of 21) AluSz|SINE|Alu 158991 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 180-13 chr5 154491692 154491969 + 1.5 NA Intergenic AluY|SINE|Alu -13603 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 270.5-16 chr2 25178332 25178704 + 1.5 NA Intergenic Intergenic -9667 NM_001035256 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 501-2 chr1 60401037 60401508 + 1.5 NA Intergenic Intergenic 221413 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 334-7 chr12 5415113 5415640 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -16732 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 239-28 chr8 114745398 114745702 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 922463 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 344-7 chr10 95296130 95296469 + 1.5 NA Intergenic AluJo|SINE|Alu -5296 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 275-32 chr6 42854931 42855175 + 1.5 NA intron (NM_001318819, intron 9 of 13) intron (NM_001318819, intron 9 of 13) -24563 NR_134563 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 143-7 chr9 130347124 130347229 + 1.5 NA exon (NM_001291815, exon 26 of 98) exon (NM_001291815, exon 26 of 98) 81416 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 207.5-15 chr15 56552647 56552872 + 1.5 NA Intergenic Intergenic -87622 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 127-9 chr8 106152478 106152624 + 1.5 NA Intergenic Intergenic -92048 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 206.5-6 chr11 109196019 109196199 + 1.5 NA Intergenic L1M8|LINE|L1 -226081 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 251.5-9 chr12 33116403 33116754 + 1.5 NA Intergenic LTR80A|LTR|ERVL -219732 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 467-15 chr2 135311520 135311930 + 1.5 NA intron (NM_001286569, intron 8 of 21) AluJo|SINE|Alu 175097 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 187-19 chr3 27107134 27107271 + 1.5 NA Intergenic Intergenic 109321 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 273.5-17 chr20 6905643 6905870 + 1.5 NA Intergenic L2c|LINE|L2 138070 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 188.5-29 chrX 45027426 45027571 + 1.5 NA intron (NR_111960, intron 6 of 27) intron (NR_111960, intron 6 of 27) 154323 NM_001291421 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 250.5-39 chr8 77406334 77406680 + 1.5 NA Intergenic Intergenic -44190 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 219.5-9 chr13 80877284 80877479 + 1.5 NA Intergenic Intergenic -141010 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 363.5-9 chr14 54130373 54130745 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -173668 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 342.5-38 chr9 79994757 79995172 + 1.5 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 19941 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 265-36 chr8 133288057 133288339 + 1.5 NA intron (NM_006096, intron 1 of 15) intron (NM_006096, intron 1 of 15) 9054 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 310-26 chr20 56959123 56959527 + 1.5 NA Intergenic Intergenic -254371 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 302-19 chr3 106642112 106642423 + 1.5 NA Intergenic Intergenic 598371 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 630.5-11 chr6 151220229 151220761 + 1.5 NA intron (NR_125868, intron 1 of 2) L1MB2|LINE|L1 7962 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 315.5-24 chr3 120353796 120354050 + 1.5 NA Intergenic Intergenic -4569 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 347.5-14 chr2 64002665 64003017 + 1.5 NA intron (NM_001005739, intron 1 of 22) intron (NM_001005739, intron 1 of 22) 16587 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 224.5-11 chr17 71063733 71063921 + 1.5 NA Intergenic Intergenic 138352 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 328.5-28 chr20 54499988 54500406 + 1.5 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 24604 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 289.5-20 chr2 64858842 64859083 + 1.5 NA intron (NR_110224, intron 1 of 4) intron (NR_110224, intron 1 of 4) 4669 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 172-10 chr22 30037447 30037668 + 1.5 NA intron (NR_110541, intron 3 of 4) AluSz6|SINE|Alu 30508 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 361 chr1 54144164 54144521 + 1.5 NA intron (NM_001353655, intron 3 of 6) intron (NM_001353655, intron 3 of 6) 8839 NM_201546 200008 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 169-2 chr10 126352589 126352786 + 1.5 NA intron (NM_001288974, intron 1 of 18) MIRc|SINE|MIR 35790 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 331.5-20 chr4 109387788 109388322 + 1.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 -45660 NM_001300813 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 410-23 chr4 104448803 104449242 + 1.5 NA Intergenic Intergenic -41943 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 266.5-4 chr10 58362876 58363093 + 1.5 NA intron (NM_003338, intron 3 of 6) intron (NM_003338, intron 3 of 6) -22159 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 220-6 chr12 64995756 64996024 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -3599 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 411.5-18 chr2 216849743 216850248 + 1.5 NA Intergenic Intergenic 10069 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 315-25 chr3 176671197 176671454 + 1.5 NA Intergenic Intergenic -35793 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 302-15 chr20 12353516 12353763 + 1.5 NA Intergenic Intergenic 435746 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 229.5-2 chr1 100928659 100928819 + 1.5 NA intron (NM_133496, intron 8 of 10) L1ME4a|LINE|L1 32649 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 351-30 chr3 89686134 89686513 + 1.5 NA Intergenic Intergenic 578702 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 524.5-9 chr20 47177810 47178231 + 1.5 NA intron (NM_172110, intron 12 of 13) L2b|LINE|L2 11053 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 377.5-17 chr5 12568874 12569264 + 1.5 NA Intergenic L1ME3C|LINE|L1 -5788 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 457.5-12 chr2 41140467 41140876 + 1.5 NA Intergenic AluJr|SINE|Alu -628236 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 147-2 chr1 51089284 51089455 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -12859 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 451.5-15 chr20 42779867 42780380 + 1.5 NA intron (NM_133170, intron 4 of 31) intron (NM_133170, intron 4 of 31) 94640 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 306-17 chr3 15751047 15751364 + 1.5 NA intron (NM_001349280, intron 3 of 26) intron (NM_001349280, intron 3 of 26) 5342 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 254-38 chr6 141313473 141313706 + 1.5 NA Intergenic Intergenic 629775 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 307.5-20 chr2 88231209 88231533 + 1.5 NA Intergenic L1MDa|LINE|L1 58232 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 331.5 chr1 19209716 19209988 + 1.5 NA promoter-TSS (NR_135115) promoter-TSS (NR_135115) 414 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 569.5-7 chr19 28901074 28901777 + 1.5 NA Intergenic AluSz6|SINE|Alu -63706 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 164.5-30 chr8 127481439 127481579 + 1.5 NA intron (NR_024393, intron 1 of 4) intron (NR_024393, intron 1 of 4) 630 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 322.5-7 chr11 79682107 79682380 + 1.5 NA Intergenic Intergenic -241213 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 400-24 chr5 105530720 105531062 + 1.5 NA Intergenic LTR16|LTR|ERVL 431417 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 326.5-9 chr12 72514151 72514606 + 1.5 NA intron (NM_013381, intron 6 of 18) L1MEd|LINE|L1 -240869 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 225-37 chr9 109737654 109737824 + 1.5 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -42459 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 199.5-10 chr14 70987093 70987430 + 1.5 NA intron (NM_001308160, intron 6 of 33) MER3|DNA|hAT-Charlie 79802 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 121 chr6 109207080 109207206 + 1.5 NA intron (NR_152435, intron 10 of 45) AluJr|SINE|Alu 41312 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 297-20 chr20 50424737 50425130 + 1.5 NA Intergenic AluJr|SINE|Alu -85388 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 465.5-16 chr3 84354154 84354574 + 1.5 NA Intergenic Intergenic 515211 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 379.5-12 chr19 33785220 33785722 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11399 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 210.5-9 chr15 65290146 65290297 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -3338 NM_017851 54956 Hs.30634 NM_017851 ENSG00000138617 PARP16 ARTD15|C15orf30|pART15 poly(ADP-ribose) polymerase family member 16 protein-coding 326-12 chr11 106994315 106994755 + 1.5 NA intron (NM_001256424, intron 1 of 8) L3b|LINE|CR1 23941 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 461.5-16 chr8 81233432 81233872 + 1.5 NA Intergenic L1ME1|LINE|L1 -46884 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 304.5-11 chr11 92562588 92562879 + 1.5 NA intron (NM_001008781, intron 2 of 24) MLT2B2|LTR|ERVL 210637 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 140-12 chr7 138044510 138044644 + 1.5 NA Intergenic L1MC5a|LINE|L1 -31882 NM_001190907 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 295-7 chr10 124258655 124258897 + 1.5 NA Intergenic Intergenic 160147 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 264-5 chr13 73618665 73618895 + 1.5 NA Intergenic Intergenic 54536 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 236-4 chr11 76510451 76510640 + 1.5 NA intron (NM_001300942, intron 10 of 21) L1M4b|LINE|L1 65520 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 283.5 chr1 113308383 113308607 + 1.5 NA Intergenic Intergenic -82020 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 237-28 chr8 59351583 59351838 + 1.5 NA Intergenic Intergenic 232500 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 228-11 chr4 76214976 76215225 + 1.5 NA intron (NM_001242936, intron 1 of 7) LTR16B2|LTR|ERVL 1060 NM_001242936 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 195-18 chr6 3326135 3326345 + 1.5 NA intron (NM_021945, intron 4 of 10) intron (NM_021945, intron 4 of 10) 67293 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 267-21 chr2 131089453 131089774 + 1.5 NA intron (NM_001321743, intron 2 of 8) AluY|SINE|Alu 3549 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 479.5-9 chr3 112340468 112341089 + 1.5 NA intron (NR_158642, intron 2 of 6) intron (NR_158642, intron 2 of 6) 7622 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 477-11 chr2 147223464 147224008 + 1.5 NA Intergenic Intergenic -620781 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 219-5 chr11 5729353 5729513 + 1.5 NA Intergenic Intergenic -7015 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 596-6 chr16 64648946 64649433 + 1.5 NA Intergenic AluYc|SINE|Alu 472874 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 180-4 chr18 4035609 4035816 + 1.5 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 73359 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 171.5-26 chr6 57190005 57190266 + 1.5 NA TTS (NM_004282) TTS (NM_004282) 17809 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 403.5-20 chr5 68859057 68859508 + 1.5 NA Intergenic Intergenic 170645 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 229.5-29 chr4 39565052 39565298 + 1.5 NA intron (NM_174921, intron 3 of 4) AluJr|SINE|Alu 37336 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 530-14 chr2 112904494 112904953 + 1.5 NA Intergenic L1MEg|LINE|L1 -8248 NM_014439 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 162.5-14 chr20 62931772 62931919 + 1.5 NA intron (NM_022105, intron 1 of 5) intron (NM_022105, intron 1 of 5) -5294 NM_080796 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 114.5-6 chr11 116034594 116034700 + 1.5 NA Intergenic L2a|LINE|L2 -274447 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 402.5-31 chr9 82253692 82254196 + 1.5 NA Intergenic Intergenic 265172 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 237.5-27 chr8 110042273 110042523 + 1.5 NA Intergenic L1PA15|LINE|L1 -66627 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 172.5-20 chr8 119508390 119508584 + 1.5 NA Intergenic AluJb|SINE|Alu 84521 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 196.5-33 chr8 4861486 4861624 + 1.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 133359 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 353-40 chr9 69527016 69527556 + 1.5 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 145085 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 489.5-15 chr3 103142204 103142581 + 1.5 NA Intergenic L1PA6|LINE|L1 381724 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 257.5-28 chr3 154788642 154788954 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -235326 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 261-16 chr4 47930290 47930559 + 1.5 NA intron (NR_125879, intron 1 of 2) intron (NR_125879, intron 1 of 2) -15757 NR_103795 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 125.5-9 chr6 71977609 71977692 + 1.5 NA intron (NM_001350411, intron 2 of 3) L2c|LINE|L2 90947 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 376.5-22 chr4 114699963 114700413 + 1.5 NA Intergenic Intergenic 43429 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 243.5-27 chr5 25837457 25837640 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 646595 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 225 chr1 94111049 94111221 + 1.5 NA intron (NM_000350, intron 3 of 49) intron (NM_000350, intron 3 of 49) 10013 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 294.5-35 chr9 14790690 14790908 + 1.5 NA intron (NR_163239, intron 23 of 37) intron (NR_163239, intron 23 of 37) -10368 NM_001370061 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 409.5-13 chr2 139760598 139760960 + 1.5 NA Intergenic HAL1|LINE|L1 825906 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 194.5-10 chr13 66790655 66790859 + 1.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -34412 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 269.5-20 chr2 63373010 63373274 + 1.5 NA intron (NM_001354045, intron 12 of 12) AluSp|SINE|Alu 64865 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 483-34 chr7 52826504 52826987 + 1.5 NA Intergenic Intergenic -208888 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 202-8 chr2 16219593 16219758 + 1.5 NA Intergenic Intergenic 169248 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 311-16 chr2 124133151 124133373 + 1.5 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 107975 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 519.5-16 chr5 83946799 83947189 + 1.5 NA intron (NM_001278642, intron 9 of 9) intron (NM_001278642, intron 9 of 9) -226139 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 141.5-3 chr1 185450723 185450927 + 1.5 NA Intergenic Intergenic -115786 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 244.5-17 chr17 32184877 32185209 + 1.5 NA intron (NM_001033566, intron 8 of 19) AluJr|SINE|Alu -33472 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 160-13 chr5 180148932 180149063 + 1.5 NA intron (NM_175062, intron 1 of 13) L1M4|LINE|L1 60214 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 128.5-32 chrX 31989229 31989321 + 1.5 NA intron (NM_000109, intron 44 of 78) MLT2B4|LTR|ERVL 166194 NM_004023 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 278.5-10 chr2 234682203 234682461 + 1.5 NA promoter-TSS (NR_132376) promoter-TSS (NR_132376) -336 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 288-14 chr16 6345139 6345556 + 1.5 NA intron (NM_018723, intron 2 of 15) MER66B|LTR|ERV1 325644 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 204-4 chr1 237556286 237556422 + 1.5 NA intron (NM_001035, intron 27 of 104) AluSx3|SINE|Alu 85235 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 473-16 chr3 186862112 186862527 + 1.5 NA promoter-TSS (NR_046662) promoter-TSS (NR_046662) -951 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 209-18 chr20 43965927 43966107 + 1.5 NA intron (NM_032883, intron 2 of 9) MIR|SINE|MIR 20121 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 446-33 chr7 2295293 2295680 + 1.5 NA intron (NM_013321, intron 1 of 10) AluSq10|SINE|Alu 18955 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 253-3 chr10 69181630 69181885 + 1.5 NA intron (NM_001323586, intron 1 of 15) MSTD|LTR|ERVL-MaLR 1523 NM_001323588 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 332-10 chr16 72996707 72997068 + 1.5 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 51241 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 242-9 chr14 46251953 46252133 + 1.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 187884 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 254.5-33 chr2 191041088 191041382 + 1.5 NA intron (NM_003151, intron 14 of 23) A-rich|Low_complexity|Low_complexity 19709 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 225-25 chr2 147165908 147166219 + 1.5 NA Intergenic Intergenic 579006 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 297-23 chr3 104426288 104426515 + 1.5 NA Intergenic Intergenic -902285 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 211.5-13 chr17 14722031 14722233 + 1.5 NA Intergenic L1PREC2|LINE|L1 -292673 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 348.5-13 chr21 29025225 29025531 + 1.5 NA intron (NM_001001992, intron 1 of 17) intron (NM_001001992, intron 1 of 17) 710 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 618.5-10 chr9 35163622 35164197 + 1.5 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 1900 NM_001371186 127.5-7 chr4 115579471 115579556 + 1.5 NA Intergenic L1M4|LINE|L1 -465893 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 404-12 chr11 100276065 100276470 + 1.5 NA intron (NM_001243270, intron 17 of 23) AluSz6|SINE|Alu -411021 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 132.5-15 chr3 105065220 105065398 + 1.5 NA Intergenic Intergenic -301404 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 131.5-14 chr16 26896662 26896790 + 1.5 NA Intergenic MIRb|SINE|MIR -170201 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 487-4 chr10 12126314 12126703 + 1.5 NA Intergenic Intergenic -3133 NM_001142627 55176 Hs.112955 NM_018144 ENSG00000065665 SEC61A2 - SEC61 translocon alpha 2 subunit protein-coding 375-6 chr11 32151319 32151747 + 1.5 NA Intergenic Intergenic -7621 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 162 chr11 47071350 47071507 + 1.5 NA intron (NM_001003677, intron 3 of 8) MIRb|SINE|MIR 105451 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 152.5-25 chr7 28571484 28571652 + 1.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -114565 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 264-23 chr6 38140210 38140543 + 1.5 NA intron (NM_021943, intron 5 of 5) L2|LINE|L2 320649 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 268.5-27 chr5 74572055 74572451 + 1.5 NA Intergenic Intergenic -35277 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 427-19 chr22 20487893 20488324 + 1.5 NA intron (NM_032775, intron 2 of 6) intron (NM_032775, intron 2 of 6) 7687 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 369-23 chr20 11479584 11479966 + 1.5 NA Intergenic L1MA3|LINE|L1 -206392 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 285-20 chr4 99383724 99384040 + 1.5 NA Intergenic Intergenic -31136 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 302.5-39 chr7 157664256 157664634 + 1.5 NA intron (NM_130843, intron 12 of 21) intron (NM_130843, intron 12 of 21) -90023 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 361.5-30 chr8 117915561 117915875 + 1.5 NA intron (NM_000127, intron 1 of 10) AluSz6|SINE|Alu 5195 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 205.5-7 chr14 87849594 87849842 + 1.5 NA Intergenic Intergenic 143464 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 330 chr1 90438095 90438400 + 1.5 NA Intergenic L1MA10|LINE|L1 -219503 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 354.5-36 chr8 73111580 73111986 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB -18611 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 420.5-9 chr19 29172328 29172791 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 40592 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 331.5-10 chr14 73638420 73638842 + 1.5 NA Intergenic Intergenic -6355 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 342.5-32 chr8 54951306 54951816 + 1.5 NA Intergenic Intergenic -150467 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 321.5-31 chr7 72018809 72019182 + 1.5 NA intron (NM_001363460, intron 4 of 5) AluSz6|SINE|Alu 318396 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 243.5-29 chr5 93725121 93725338 + 1.5 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) 16371 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 406-10 chr2 47762267 47762762 + 1.5 NA Intergenic MER41B|LTR|ERV1 -20568 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 120-3 chr17 56462584 56462704 + 1.5 NA intron (NM_001370326, intron 14 of 20) intron (NM_001370326, intron 14 of 20) -131055 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 306.5-17 chr17 63827636 63828013 + 1.5 NA promoter-TSS (NM_017647) promoter-TSS (NM_017647) 140 NM_001199163 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 257-29 chr20 53240640 53240836 + 1.5 NA intron (NM_001193421, intron 1 of 2) (ATAG)n|Simple_repeat|Simple_repeat 55455 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 467-19 chr5 105883741 105884052 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 784422 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 358 chr1 192641426 192641704 + 1.5 NA intron (NM_002927, intron 3 of 6) L2c|LINE|L2 5418 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 408-38 chr7 27902058 27902627 + 1.5 NA intron (NM_175061, intron 2 of 4) MER112|DNA|hAT-Charlie 162247 NM_001362795 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 505.5-2 chr1 94679497 94679956 + 1.5 NA intron (NR_160779, intron 2 of 5) MIR3|SINE|MIR 66174 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 358-40 chr6 49805816 49806133 + 1.5 NA Intergenic L1PA11|LINE|L1 -5566 NR_125839 101927020 Hs.571168 NR_125839 LOC101927020 - uncharacterized LOC101927020 ncRNA 348.5-10 chr2 197994044 197994322 + 1.5 NA intron (NM_006226, intron 1 of 5) LTR78|LTR|ERV1 189590 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 211.5-36 chr8 122016387 122016558 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -375032 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 133.5-9 chr14 63415428 63415624 + 1.5 NA intron (NR_104104, intron 3 of 12) intron (NR_104104, intron 3 of 12) 92712 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 246.5-22 chr21 33283045 33283266 + 1.5 NA exon (NM_000628, exon 5 of 7) exon (NM_000628, exon 5 of 7) 16788 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 233.5-13 chr2 20141041 20141218 + 1.5 NA Intergenic Intergenic 84001 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 161-16 chr7 48429210 48429333 + 1.5 NA intron (NM_152701, intron 42 of 61) L1MB8|LINE|L1 257813 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 348.5-2 chr11 22953586 22953891 + 1.5 NA Intergenic Intergenic -93264 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 175-16 chr8 35196074 35196276 + 1.5 NA Intergenic L1M7|LINE|L1 -39300 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 116 chr19 39772467 39772616 + 1.5 NA Intergenic LTR54B|LTR|ERV1 -4053 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 388-25 chr3 111447931 111448422 + 1.5 NA Intergenic L1PA15|LINE|L1 -94021 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 339-30 chr5 91083992 91084251 + 1.5 NA intron (NR_003149, intron 86 of 89) intron (NR_003149, intron 86 of 89) 230281 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 334.5-21 chr3 155404462 155404761 + 1.5 NA Intergenic Intergenic -81192 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 552.5-11 chr22 26260043 26260637 + 1.5 NA intron (NM_001184776, intron 1 of 14) L1PB1|LINE|L1 90866 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 325-23 chr5 95852409 95852801 + 1.5 NA non-coding (NR_026936, exon 1 of 3) non-coding (NR_026936, exon 1 of 3) 373 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 350.5-16 chr6 62818975 62819517 + 1.5 NA Intergenic Intergenic 500731 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 138-3 chr14 53645243 53645398 + 1.5 NA Intergenic L1MA4|LINE|L1 303164 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 218-38 chr8 137328925 137329173 + 1.5 NA Intergenic Intergenic 84539 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 268.5-23 chr5 25109604 25110022 + 1.5 NA Intergenic L1MEg|LINE|L1 80843 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 445.5-24 chr8 80761627 80762119 + 1.5 NA intron (NM_001033723, intron 2 of 8) Ricksha_c|DNA|MULE-MuDR 112595 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 274-14 chr16 84936018 84936464 + 1.5 NA Intergenic AluYb8|SINE|Alu 75294 NM_017740 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 602.5 chr1 82948615 82949356 + 1.5 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 35937 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 649.5-9 chr8 118845776 118846452 + 1.5 NA Intergenic Intergenic 105771 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 211-8 chr14 56123593 56123827 + 1.5 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 5299 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 405-17 chr20 48228935 48229410 + 1.5 NA Intergenic Intergenic -130739 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 367.5-16 chr2 63794796 63795353 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -45890 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 203.5-2 chr1 110728035 110728205 + 1.5 NA Intergenic Intergenic -53180 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 272.5-2 chr1 147780964 147781340 + 1.5 NA Intergenic Intergenic -7790 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 353.5-25 chr9 82575547 82575908 + 1.5 NA Intergenic L1MB4|LINE|L1 487415 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 335-42 chr3 96331680 96332025 + 1.5 NA Intergenic MER50B|LTR|ERV1 -28112 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 550.5-14 chr7 48366788 48367341 + 1.5 NA intron (NM_152701, intron 31 of 61) intron (NM_152701, intron 31 of 61) 195606 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 274-19 chr22 27125850 27126141 + 1.5 NA Intergenic L1ME4b|LINE|L1 -61521 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 326.5-8 chr12 68819481 68819915 + 1.5 NA intron (NM_001145337, intron 4 of 10) AluSp|SINE|Alu 10674 NM_001278462 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 589.5-8 chr4 114709992 114710615 + 1.5 NA Intergenic Intergenic 53544 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 327.5-14 chr2 122981408 122981731 + 1.5 NA Intergenic AluSc|SINE|Alu 91912 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 222.5-28 chr8 16524339 16524579 + 1.5 NA Intergenic Intergenic -331668 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 238.5-43 chrX 33781313 33781563 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie 350892 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 299.5-11 chr14 87042875 87043262 + 1.5 NA Intergenic Intergenic 137290 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 368-3 chr10 80048277 80048560 + 1.5 NA non-coding (NR_027428, exon 6 of 6) non-coding (NR_027428, exon 6 of 6) -30228 NM_001270373 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 501.5-28 chr9 37276574 37277121 + 1.5 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) -145849 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 369-22 chr2 118492805 118493218 + 1.5 NA Intergenic HAL1b|LINE|L1 109955 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 237.5-30 chrX 52395639 52395797 + 1.5 NA Intergenic L1PB1|LINE|L1 26697 NM_130777 9502 Hs.409726 NM_130777 ENSG00000155622 XAGE2 CT12.2|GAGED3|XAGE-2|XAGE2B X antigen family member 2 protein-coding 288.5-10 chr11 13053004 13053240 + 1.5 NA Intergenic Intergenic 43806 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 278.5-24 chr6 127623327 127623686 + 1.5 NA Intergenic Intergenic 46332 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 192-4 chr1 239961831 239961970 + 1.5 NA Intergenic MIRc|SINE|MIR -45624 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 457.5-10 chr14 74533712 74534119 + 1.5 NA intron (NM_000428, intron 9 of 35) intron (NM_000428, intron 9 of 35) 40150 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 263-3 chr1 201194013 201194376 + 1.5 NA exon (NM_001367841, exon 3 of 25) exon (NM_001367841, exon 3 of 25) 3369 NM_001164586 91156 Hs.519024 NM_178275 ENSG00000163395 IGFN1 EEF1A2BP1 immunoglobulin like and fibronectin type III domain containing 1 protein-coding 212-21 chr4 74962617 74962908 + 1.5 NA intron (NR_121617, intron 3 of 3) L1MB3|LINE|L1 7600 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 278.5-22 chr6 41940979 41941213 + 1.5 NA 5' UTR (NM_001287427, exon 1 of 5) 5' UTR (NM_001287427, exon 1 of 5) 752 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 302-13 chr2 127071225 127071574 + 1.5 NA intron (NM_001320633, intron 2 of 14) intron (NM_001320633, intron 2 of 14) 10666 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 462.5-3 chr10 32153645 32154161 + 1.5 NA Intergenic L1MDa|LINE|L1 -97478 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 157.5-6 chr16 3360463 3360638 + 1.5 NA Intergenic Intergenic 4661 NM_012368 4993 Hs.258574 NM_012368 ENSG00000168158 OR2C1 OLFmf3|OR2C2P olfactory receptor family 2 subfamily C member 1 protein-coding 183-19 chr5 159459971 159460100 + 1.5 NA intron (NR_027110, intron 2 of 6) intron (NR_027110, intron 2 of 6) 6241 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 527-14 chr2 4534944 4535553 + 1.5 NA Intergenic Intergenic 120974 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 267-23 chr20 52826943 52827271 + 1.5 NA Intergenic L1MC3|LINE|L1 -145251 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 194-10 chr2 135901956 135902128 + 1.5 NA Intergenic L1ME1|LINE|L1 -25599 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 242-37 chr9 102706638 102706906 + 1.5 NA Intergenic AluJb|SINE|Alu 187135 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 310-46 chr9 95378695 95379008 + 1.5 NA Intergenic AluJr4|SINE|Alu -61142 NM_000136 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 318.5-20 chr22 47560433 47560733 + 1.5 NA Intergenic Intergenic 70986 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 272.5-10 chr14 61126764 61127116 + 1.5 NA Intergenic Intergenic -145250 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 281.5-17 chr22 24918644 24918885 + 1.5 NA intron (NM_001098498, intron 22 of 23) AluSq2|SINE|Alu 27931 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 341-11 chr14 30197226 30197614 + 1.5 NA Intergenic Intergenic -269573 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 264.5-2 chr1 109250082 109250273 + 1.5 NA exon (NM_001408, exon 1 of 34) exon (NM_001408, exon 1 of 34) 638 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 183-17 chr4 37474625 37474796 + 1.5 NA intron (NM_001104629, intron 1 of 3) MIRb|SINE|MIR 20785 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 141.5-21 chr7 112947653 112947789 + 1.5 NA Intergenic L1ME4b|LINE|L1 -7846 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 354.5-35 chr7 79954379 79954947 + 1.5 NA Intergenic L1PA17|LINE|L1 -180168 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 499-15 chr4 176523211 176523543 + 1.5 NA Intergenic Intergenic 203411 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 331-5 chr1 236238452 236238899 + 1.5 NA intron (NM_019891, intron 6 of 15) intron (NM_019891, intron 6 of 15) 43283 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 212-13 chr2 103126078 103126291 + 1.5 NA Intergenic Intergenic -141755 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 367.5-38 chr9 92508331 92508631 + 1.5 NA intron (NM_001197296, intron 6 of 9) intron (NM_001197296, intron 6 of 9) 19577 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 288-8 chr12 2071423 2071768 + 1.5 NA intron (NM_199460, intron 1 of 49).2 L1MEd|LINE|L1 18310 NM_001167624 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 304-12 chr15 84990043 84990350 + 1.5 NA intron (NM_173454, intron 1 of 20) L1ME2z|LINE|L1 8222 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 328-2 chr1 182232023 182232302 + 1.5 NA intron (NR_104175, intron 2 of 2) LTR88b|LTR|Gypsy? 81899 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 272-31 chr5 44879930 44880201 + 1.5 NA Intergenic Intergenic 71118 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 293.5-28 chr6 160910250 160910487 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie -81359 NM_001363582 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 146.5-21 chr2 184290094 184290239 + 1.5 NA Intergenic Intergenic -88809 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 246-15 chr8 120524341 120524650 + 1.5 NA TTS (NM_022045) TTS (NM_022045) 79076 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 200.5-23 chr4 157690947 157691080 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 118523 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 280.5-23 chr3 177062699 177062929 + 1.5 NA intron (NM_001321195, intron 2 of 14) intron (NM_001321195, intron 2 of 14) 133664 NM_001321195 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 241.5-22 chr3 42410360 42410626 + 1.5 NA 5' UTR (NM_144634, exon 1 of 5) 5' UTR (NM_144634, exon 1 of 5) 117 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 443-25 chr3 1098825 1099342 + 1.5 NA intron (NM_001349362, intron 1 of 21) intron (NM_001349362, intron 1 of 21) 6059 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 225-22 chr2 79383429 79383645 + 1.5 NA Intergenic Intergenic 117307 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 455-9 chr13 61832025 61832434 + 1.5 NA Intergenic L2|LINE|L2 197319 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 195.5-23 chr4 45914534 45914756 + 1.5 NA Intergenic Intergenic 209409 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 213-11 chr3 6611323 6611566 + 1.5 NA Intergenic Intergenic 194005 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 195.5-9 chr11 120703929 120704149 + 1.5 NA intron (NM_001282470, intron 2 of 19) MIRb|SINE|MIR 115076 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 221-17 chr3 179365187 179365410 + 1.5 NA intron (NM_033540, intron 7 of 17) intron (NM_033540, intron 7 of 17) 17589 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 407-31 chr8 79918058 79918608 + 1.5 NA TTS (NM_014018) TTS (NM_014018) -46596 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 139.5-6 chr14 51244053 51244218 + 1.5 NA intron (NM_030755, intron 2 of 7) intron (NM_030755, intron 2 of 7) 3888 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 215-6 chr10 46314634 46314817 + 1.5 NA intron (NM_001278688, intron 16 of 16) intron (NM_001278688, intron 16 of 16) 27728 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 331-35 chr5 106596605 106596868 + 1.5 NA Intergenic L1MC3|LINE|L1 414278 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 301.5-7 chr2 7496159 7496446 + 1.5 NA Intergenic Intergenic 75041 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 543.5-10 chr2 33778603 33779084 + 1.5 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -50626 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 183.5-4 chr1 180176740 180176941 + 1.5 NA intron (NM_002826, intron 4 of 11) intron (NM_002826, intron 4 of 11) 21971 NM_002826 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 257-25 chr2 180659617 180659825 + 1.5 NA Intergenic Intergenic -32383 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 338-8 chr13 45055311 45055683 + 1.5 NA Intergenic Intergenic -50782 NR_120424 101929259 Hs.638490 NR_120424 LOC101929259 - uncharacterized LOC101929259 ncRNA 503-27 chr6 132365237 132365945 + 1.5 NA intron (NM_015529, intron 4 of 11) MIRc|SINE|MIR 35884 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 164.5-13 chr17 78159819 78159950 + 1.5 NA intron (NM_001163075, intron 2 of 4) L1MB5|LINE|L1 -8661 NM_001320523 9144 Hs.464210 NM_004710 ENSG00000108639 SYNGR2 - synaptogyrin 2 protein-coding 393-10 chr13 85533505 85533835 + 1.5 NA intron (NR_046989, intron 2 of 3) intron (NR_046989, intron 2 of 3) 170067 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 357.5-19 chr8 73629168 73629592 + 1.5 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 117460 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 390-9 chr16 77796445 77796826 + 1.5 NA intron (NM_020927, intron 1 of 8) MIRb|SINE|MIR 8071 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 316-19 chr2 179691477 179691734 + 1.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -31411 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 471-12 chr14 31676580 31677158 + 1.5 NA intron (NR_120408, intron 6 of 9) L1ME2|LINE|L1 -37700 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 133 chr10 97704975 97705107 + 1.5 NA Intergenic AluSx3|SINE|Alu -8689 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 197-4 chr1 157054624 157054755 + 1.5 NA Intergenic L1ME1|LINE|L1 -8947 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 138.5-7 chr14 59845968 59846124 + 1.5 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 24730 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 246.5-32 chr5 100175764 100175986 + 1.5 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 212379 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 221-27 chr8 54072692 54073015 + 1.5 NA intron (NM_001279356, intron 2 of 7) AluSz|SINE|Alu 28701 NM_001279360 10434 Hs.744046 NM_006330 ENSG00000120992 LYPLA1 APT-1|APT1|LPL-I|LPL1|hAPT1 lysophospholipase 1 protein-coding 215.5-5 chr10 4788889 4789079 + 1.5 NA Intergenic L1ME2|LINE|L1 -37193 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 256.5-14 chr19 33123551 33123807 + 1.5 NA intron (NR_135270, intron 18 of 20) AluJo|SINE|Alu -8435 NM_173479 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 178.5-23 chr7 102417926 102418045 + 1.5 NA intron (NR_038967, intron 8 of 8) L1MC3|LINE|L1 -12130 NR_031669 100313829 NR_031669 ENSG00000221510 MIR548O MIRN548O microRNA 548o ncRNA 295-2 chr1 40435941 40436264 + 1.5 NA Intergenic Intergenic -13962 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 247-25 chr7 47714528 47714783 + 1.5 NA Intergenic L1M5|LINE|L1 -46821 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 148-5 chr3 87002367 87002480 + 1.5 NA Intergenic Intergenic -11274 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 186.5-24 chr5 174047020 174047233 + 1.5 NA intron (NM_015980, intron 2 of 4) intron (NM_015980, intron 2 of 4) 1420 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 321.5-25 chr5 113571503 113571757 + 1.5 NA intron (NM_001345975, intron 22 of 28) L1PA11|LINE|L1 57936 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 349-21 chr2 221277104 221277472 + 1.5 NA Intergenic Intergenic 295016 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 214.5-25 chr5 31062663 31062845 + 1.5 NA Intergenic Intergenic -130932 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 240.5-21 chr5 160718098 160718314 + 1.5 NA intron (NM_001366652, intron 2 of 24) intron (NM_001366652, intron 2 of 24) -32815 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 390.5-7 chr14 52770874 52771177 + 1.5 NA intron (NM_001130701, intron 11 of 11) intron (NM_001130701, intron 11 of 11) 20582 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 459.5-20 chr7 137327581 137328053 + 1.5 NA intron (NM_001321387, intron 1 of 4) intron (NM_001321387, intron 1 of 4) 15916 NM_002825 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 486-12 chr14 65273521 65274137 + 1.5 NA Intergenic AluJo|SINE|Alu -51482 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 240.5-19 chr5 45857012 45857384 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -160818 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 187.5-24 chr5 32404702 32404879 + 1.5 NA intron (NM_016107, intron 6 of 19) intron (NM_016107, intron 6 of 19) -10315 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 236-26 chr5 61972569 61972928 + 1.5 NA Intergenic Intergenic -237050 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 215.5-22 chr2 112627035 112627218 + 1.5 NA Intergenic MER102c|DNA|hAT-Charlie 17054 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 296-28 chr5 127373678 127373938 + 1.5 NA intron (NM_001308121, intron 5 of 13) LTR41|LTR|ERVL 83012 NM_001256545 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 267.5-15 chr3 35025907 35026184 + 1.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 367978 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 125-5 chr8 119762602 119762747 + 1.5 NA intron (NM_003184, intron 18 of 25) intron (NM_003184, intron 18 of 25) 70167 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 277.5-14 chr17 79483876 79484216 + 1.5 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) 32102 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 549.5-9 chr4 157355576 157356217 + 1.5 NA intron (NM_001083620, intron 12 of 15) (ATAT)n|Simple_repeat|Simple_repeat 135168 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 207-8 chr14 48852947 48853188 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 733313 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 503.5-15 chr6 20841716 20842440 + 1.5 NA intron (NM_017774, intron 8 of 15) intron (NM_017774, intron 8 of 15) 307621 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 174.5-13 chr19 17587383 17587563 + 1.5 NA Intergenic Intergenic 31824 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 BSVD3|ColGalT 1|GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 206.5-36 chr7 46320556 46320803 + 1.5 NA Intergenic Intergenic 376443 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 250-7 chr11 5243636 5243851 + 1.5 NA promoter-TSS (NR_001589) promoter-TSS (NR_001589) -151 NR_001589 3044 Hs.20205 NR_001589 HBBP1 HBH1|HBHP hemoglobin subunit beta pseudogene 1 pseudo 437-11 chr12 2807534 2807977 + 1.5 NA intron (NR_146318, intron 1 of 1) intron (NR_146318, intron 1 of 1) -4913 NR_130744 55846 Hs.239 NM_018463 ENSG00000111203 ITFG2 FGGAP1|MDS028 integrin alpha FG-GAP repeat containing 2 protein-coding 395-30 chr6 146022555 146022989 + 1.5 NA Intergenic X7B_LINE|LINE|CR1 -4935 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 211-24 chr7 27570662 27570915 + 1.5 NA intron (NM_152740, intron 4 of 7) L1MEd|LINE|L1 -45186 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 518-4 chr1 199451822 199452389 + 1.5 NA Intergenic Intergenic 303507 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 265.5-6 chr10 94537396 94537681 + 1.5 NA Intergenic Intergenic -8229 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 354.5-28 chr4 170477360 170477623 + 1.5 NA Intergenic Intergenic 250900 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 469.5-18 chr7 84920968 84921323 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 200786 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 222.5-26 chr5 164193460 164193725 + 1.5 NA Intergenic AluSc|SINE|Alu 273810 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 198-7 chr17 55299520 55299691 + 1.5 NA intron (NM_001330375, intron 2 of 3) intron (NM_001330375, intron 2 of 3) 33383 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 242.5-11 chr2 61147984 61148303 + 1.5 NA intron (NM_001316317, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 3027 NM_001367070 339804 Hs.140617 NM_001143959 ENSG00000237651 C2orf74 - chromosome 2 open reading frame 74 protein-coding 631.5-7 chrX 45705134 45705994 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -25524 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 208-9 chr15 78185667 78185895 + 1.5 NA intron (NM_015162, intron 5 of 13) L1MEf|LINE|L1 36419 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase (NAD(+)) 3 alpha protein-coding 347.5-29 chr8 17159406 17159715 + 1.5 NA intron (NM_001362989, intron 1 of 12) intron (NM_001362989, intron 1 of 12) 2396 NM_001362988 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 151.5-18 chr4 58838627 58838831 + 1.5 NA Intergenic L1M5|LINE|L1 -145553 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 307.5-26 chr3 120486617 120486840 + 1.5 NA Intergenic L1MA7|LINE|L1 -35736 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 229-34 chr9 81208255 81208453 + 1.5 NA Intergenic AluSx1|SINE|Alu 481181 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 359-29 chr20 58323392 58323788 + 1.5 NA intron (NM_020673, intron 2 of 6) L1MEf|LINE|L1 13875 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 193.5-24 chr5 12422671 12422835 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -152104 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 252.5-2 chr1 227425749 227426085 + 1.5 NA Intergenic Intergenic -107425 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 319.5-16 chr2 214038052 214038322 + 1.5 NA intron (NR_047660, intron 12 of 14) L1MC4|LINE|L1 280120 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 249-28 chr5 161959743 161959935 + 1.5 NA intron (NR_126372, intron 1 of 2) L1ME4b|LINE|L1 41357 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 291-6 chr12 40280084 40280331 + 1.5 NA intron (NM_198578, intron 18 of 50) AluJo|SINE|Alu 55210 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 378.5-9 chr11 43516534 43516828 + 1.5 NA Intergenic Intergenic -42975 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 440-6 chr10 55814824 55815117 + 1.5 NA Intergenic MER57-int|LTR|ERV1 -187028 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 308.5-32 chr8 121075190 121075469 + 1.5 NA Intergenic L1ME5|LINE|L1 -263283 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 249-35 chrX 77970721 77970971 + 1.5 NA intron (NM_001282224, intron 1 of 21) L2a|LINE|L2 -1208 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 313.5-14 chr17 82910794 82911186 + 1.5 NA intron (NM_005993, intron 22 of 38) intron (NM_005993, intron 22 of 38) -70968 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 173-16 chr5 118031052 118031204 + 1.5 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -251446 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 247-15 chr22_KI270733v1_random 146397 146704 + 1.5 NA Intergenic Intergenic 16346 NR_146148 109864282 NR_146148 RNA28SN2 - RNA, 28S ribosomal N2 rRNA 209-22 chr4 64124702 64124933 + 1.5 NA Intergenic Intergenic 284633 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 424.5-20 chr9 16723330 16723692 + 1.5 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -3303 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 187-17 chr22 41494197 41494331 + 1.5 NA intron (NM_001098, intron 1 of 17) intron (NM_001098, intron 1 of 17) 25147 NM_001098 50 Hs.643610 NM_001098 ENSG00000100412 ACO2 ACONM|HEL-S-284|ICRD|OCA8|OPA9 aconitase 2 protein-coding 233-9 chr14 66140265 66140566 + 1.5 NA Intergenic L2-3_Crp|LINE|L2 -345956 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 209-8 chr13 40650512 40650700 + 1.5 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 16035 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 343-27 chr5 149105482 149105761 + 1.5 NA intron (NR_122044, intron 2 of 2) MER2|DNA|TcMar-Tigger -35826 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 251.5-18 chr2 209311988 209312218 + 1.5 NA Intergenic Intergenic -111944 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 130.5-22 chrX 65183578 65183717 + 1.5 NA Intergenic Intergenic -148906 NM_001243804 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 212-28 chr8 102309664 102309855 + 1.5 NA intron (NM_001282873, intron 20 of 58) Tigger3b|DNA|TcMar-Tigger 70308 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 306-33 chr7 117316161 117316402 + 1.5 NA intron (NM_003391, intron 2 of 4) intron (NM_003391, intron 2 of 4) 6777 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 247.5-21 chr4 184394801 184395021 + 1.5 NA intron (NM_002199, intron 7 of 8) intron (NM_002199, intron 7 of 8) -12605 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LINC02362 - long intergenic non-protein coding RNA 2362 ncRNA 286-27 chr5 116064534 116064738 + 1.5 NA Intergenic L1MDa|LINE|L1 13170 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 187.5-2 chr1 55922480 55922652 + 1.5 NA intron (NR_147162, intron 1 of 2) L1ME3Cz|LINE|L1 22397 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 168-10 chr3 18629092 18629255 + 1.5 NA Intergenic Intergenic -183581 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 127-8 chr6 84972965 84973134 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -208451 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 266.5-20 chr3 74441801 74442081 + 1.5 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 79199 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 350-16 chr2 24051732 24051965 + 1.5 NA intron (NM_004116, intron 1 of 3) L2a|LINE|L2 2107 NR_136536 2281 Hs.709461 NM_004116 ENSG00000119782 FKBP1B FKBP12.6|FKBP1L|OTK4|PKBP1L|PPIase FKBP prolyl isomerase 1B protein-coding 305-11 chr11 113845973 113846350 + 1.5 NA intron (NM_001346268, intron 1 of 20) L1MB3|LINE|L1 29411 NM_001346257 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 237.5-6 chr12 38863143 38863412 + 1.5 NA intron (NM_153634, intron 3 of 19) L1ME3A|LINE|L1 42314 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 280-36 chr8 91115784 91116067 + 1.5 NA intron (NM_001354470, intron 1 of 3) intron (NM_001354470, intron 1 of 3) 13306 NM_001354470 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 184.5-25 chrX 22144395 22144588 + 1.5 NA intron (NM_001282754, intron 12 of 20) L1MC5a|LINE|L1 28492 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 239-13 chr14 78268141 78268414 + 1.5 NA intron (NR_073547, intron 2 of 20) (GTTTT)n|Simple_repeat|Simple_repeat 97904 NR_158975 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 200-13 chr2 221337448 221337581 + 1.5 NA Intergenic AluSz|SINE|Alu 234790 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 261-12 chr2 194699887 194700246 + 1.5 NA Intergenic Intergenic -30529 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 259.5-12 chr17 28462860 28463147 + 1.5 NA Intergenic MER90|LTR|ERV1 -10641 NM_001346683 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 339-37 chr8 59167465 59167942 + 1.5 NA Intergenic L1MB2|LINE|L1 48493 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 350.5-8 chr22 17703429 17703739 + 1.5 NA 3' UTR (NM_001363824, exon 6 of 6) 3' UTR (NM_001363824, exon 6 of 6) -3074 NM_001270733 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 437-38 chr8 81148715 81149174 + 1.5 NA Intergenic Intergenic -36876 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 471-19 chr18 13266338 13266766 + 1.5 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -11553 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 247-11 chr2 219211040 219211235 + 1.5 NA intron (NM_005689, intron 14 of 18) intron (NM_005689, intron 14 of 18) 4353 NM_001270998 130617 Hs.534540 NM_138802 ENSG00000158552 ZFAND2B AIRAPL zinc finger AN1-type containing 2B protein-coding 448-19 chr2 115113963 115114586 + 1.5 NA intron (NM_001178037, intron 1 of 25) MER65C|LTR|ERV1 47069 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 233-19 chr3 180971145 180971468 + 1.5 NA intron (NM_001013438, intron 15 of 15) intron (NM_001013438, intron 15 of 15) 18212 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 264-10 chr17 64105363 64105560 + 1.5 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 24683 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 288.5-22 chr18 5976258 5976593 + 1.5 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -80471 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 271.5-2 chr1 44916000 44916364 + 1.5 NA intron (NM_001166588, intron 5 of 9) HAL1b|LINE|L1 70413 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 263.5-19 chr4 72805148 72805522 + 1.5 NA Intergenic L1MD1|LINE|L1 -236114 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 178-4 chr1 175537810 175538047 + 1.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 205667 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 473.5-17 chr8 135949011 135949579 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger 491839 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 375-14 chr18 8341797 8342083 + 1.5 NA intron (NM_002845, intron 20 of 30) intron (NM_002845, intron 20 of 30) 25094 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 459-3 chr10 115566627 115567066 + 1.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 473481 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 328.5-2 chr1 179008951 179009240 + 1.5 NA Intergenic AluSx3|SINE|Alu -16709 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 349.5-4 chr11 30509123 30509448 + 1.5 NA intron (NM_001584, intron 2 of 5) (AATG)n|Simple_repeat|Simple_repeat 71208 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 282-21 chr4 31917882 31918193 + 1.5 NA Intergenic Intergenic -79342 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 515.5-8 chr20 51870915 51871558 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -8323 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 349.5-26 chr6 36285492 36285801 + 1.5 NA intron (NM_001145717, intron 1 of 7) intron (NM_001145717, intron 1 of 7) 15186 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 285-8 chr11 15967000 15967404 + 1.5 NA 3' UTR (NM_001367872, exon 17 of 17) 3' UTR (NM_001367872, exon 17 of 17) 2419 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 268.5-21 chr4 56194672 56194950 + 1.5 NA intron (NM_020722, intron 2 of 10) MLT1A0|LTR|ERVL-MaLR 24616 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 270-22 chr5 1275244 1275486 + 1.5 NA intron (NM_198253, intron 6 of 15) AluSq|SINE|Alu 19682 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 207.5-5 chr10 36533870 36534132 + 1.5 NA Intergenic Intergenic -591856 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 181-2 chr1 205152015 205152152 + 1.5 NA intron (NM_199462, intron 10 of 11) Tigger3b|DNA|TcMar-Tigger -30105 NM_001193273 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 370-23 chr3 98056818 98057115 + 1.5 NA Intergenic Intergenic -21662 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 324-8 chr11 9529272 9529699 + 1.5 NA TTS (NM_003442) TTS (NM_003442) -44185 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 241.5-32 chr7 36485791 36486057 + 1.5 NA Intergenic Intergenic -95567 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 156-19 chr8 40081202 40081366 + 1.5 NA Intergenic Intergenic -72198 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 542-20 chr6 104342656 104343154 + 1.5 NA Intergenic L1M2|LINE|L1 516641 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 370.5-6 chr14 52799057 52799471 + 1.5 NA Intergenic L2a|LINE|L2 -7657 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 166.5-11 chr2 113034261 113034444 + 1.5 NA intron (NM_173178, intron 1 of 4) L2a|LINE|L2 18515 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 275.5-36 chr9 33896498 33896806 + 1.5 NA intron (NM_017811, intron 2 of 4) AluSc8|SINE|Alu 37712 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 356-14 chr14 97238166 97238483 + 1.5 NA Intergenic Intergenic 83467 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 279-27 chr4 133489730 133490021 + 1.5 NA Intergenic Intergenic 340581 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 281-9 chr11 113251812 113252123 + 1.5 NA intron (NM_001076682, intron 16 of 18) intron (NM_001076682, intron 16 of 18) 21934 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 214.5-17 chr22 26985462 26985688 + 1.5 NA Intergenic Intergenic 74943 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 373-21 chr2 13569550 13569811 + 1.5 NA Intergenic Intergenic -562667 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 329 chr1 23126789 23127118 + 1.5 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 41903 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 296-23 chr22 34884357 34884766 + 1.5 NA intron (NR_138042, intron 3 of 4) AluSx1|SINE|Alu 113355 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 220-20 chr22 26537242 26537447 + 1.5 NA intron (NM_003595, intron 3 of 6) MIR|SINE|MIR 17979 NR_031615 100313914 NR_031615 ENSG00000221760 MIR548J MIRN548J|hsa-mir-548j microRNA 548j ncRNA 187-6 chr14 23749496 23749645 + 1.5 NA Intergenic Intergenic 113206 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 194-17 chr4 110640171 110640357 + 1.5 NA intron (NM_001204397, intron 1 of 6) intron (NM_001204397, intron 1 of 6) 1859 NM_153426 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 276.5-24 chr20 35067012 35067336 + 1.5 NA intron (NM_199368, intron 3 of 18) L1MB8|LINE|L1 25633 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 479-3 chr10 67604834 67605486 + 1.5 NA intron (NM_001127384, intron 3 of 17) L1MA9|LINE|L1 60500 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 269.5-42 chr5 43032805 43033126 + 1.5 NA intron (NR_104651, intron 2 of 2) AluSx1|SINE|Alu 7380 NM_001014279 389289 Hs.529385 NM_001014279 ENSG00000177721 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 220-3 chr1 147452021 147452236 + 1.5 NA intron (NR_038423, intron 3 of 3) L2c|LINE|L2 65747 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 269.5-33 chr3 43287572 43287943 + 1.5 NA intron (NM_001330750, intron 1 of 4) intron (NM_001330750, intron 1 of 4) 1217 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 159.5-10 chr12 21534613 21534747 + 1.5 NA Intergenic Tigger5b|DNA|TcMar-Tigger 6755 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 470-32 chr5 114306389 114306865 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -55443 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 193-14 chr22 22804492 22804710 + 1.5 NA Intergenic L1MEc|LINE|L1 -18175 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 335-45 chr5 161225171 161225508 + 1.5 NA Intergenic L1P4|LINE|L1 -286713 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 170-13 chr18 52155239 52155419 + 1.5 NA Intergenic AluSz6|SINE|Alu -184868 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 200.5-30 chr8 135973759 135974069 + 1.5 NA Intergenic Intergenic 516458 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 231-18 chr20 48230702 48230993 + 1.5 NA Intergenic Intergenic -129064 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 194-4 chr14 55481219 55481442 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -40785 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 150-7 chr5 53064309 53064511 + 1.5 NA intron (NR_073106, intron 13 of 29) intron (NR_073106, intron 13 of 29) 45347 NM_004531 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 265.5-32 chr5 87740750 87741110 + 1.5 NA Intergenic Intergenic 78888 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 124.5-5 chr14 83715688 83715772 + 1.5 NA Intergenic Intergenic 1073098 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 336-24 chr16 82323746 82324005 + 1.5 NA Intergenic AluJo|SINE|Alu -153651 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 279-22 chr22 25355144 25355503 + 1.5 NA intron (NM_182492, intron 2 of 3) L1MB4|LINE|L1 7234 NM_182492 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 440.5-21 chr8 55384629 55384971 + 1.5 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 70521 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 339.5-5 chr11 35013580 35013876 + 1.5 NA Intergenic Intergenic 71891 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 370-4 chr1 115806008 115806398 + 1.5 NA Intergenic Intergenic 34500 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 227.5-2 chr1 202861949 202862162 + 1.5 NA intron (NR_002929, intron 1 of 2) intron (NR_002929, intron 1 of 2) 301 NR_002929 148709 Hs.162880 NR_002929 ENSG00000234996 LOC148709 - actin gamma 1 pseudogene pseudo 141.5-16 chr4 95147352 95147500 + 1.5 NA intron (NM_001256792, intron 8 of 10) intron (NM_001256792, intron 8 of 10) 55935 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 155-12 chr7 116985153 116985360 + 1.5 NA intron (NR_161423, intron 1 of 13) intron (NR_161423, intron 1 of 13) -29656 NM_001369603 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 418 chr1 71704288 71704769 + 1.5 NA intron (NM_173808, intron 3 of 6) L1MEc|LINE|L1 132484 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 451.5-12 chr2 133702479 133703218 + 1.5 NA Intergenic AluYa5|SINE|Alu -134385 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 285.5-19 chr4 94814426 94814826 + 1.5 NA intron (NM_001203, intron 1 of 12) MIR|SINE|MIR 56671 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 466-7 chr10 105855022 105855575 + 1.5 NA Intergenic L1ME3A|LINE|L1 -34965 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 125-2 chr16 56957077 56957219 + 1.5 NA Intergenic AluJb|SINE|Alu -4802 NM_001286085 1071 Hs.89538 NM_000078 ENSG00000087237 CETP BPIFF|HDLCQ10 cholesteryl ester transfer protein protein-coding 158-6 chr2 47877003 47877134 + 1.5 NA intron (NM_001190274, intron 1 of 22) AluJr|SINE|Alu 11651 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 168.5-35 chr9 130078510 130078680 + 1.5 NA intron (NM_020960, intron 4 of 17) MLT1L|LTR|ERVL-MaLR 24689 NM_001136557 57720 Hs.512461 NM_020960 ENSG00000148358 GPR107 GCDRP|LUSTR1|bA138E2.2 G protein-coupled receptor 107 protein-coding 121-3 chr8 135511227 135511384 + 1.5 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 53849 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 232-8 chr10 125444411 125444617 + 1.5 NA Intergenic Intergenic -129857 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 270-17 chr20 49688250 49688474 + 1.5 NA intron (NM_004776, intron 1 of 8) L1MEg1|LINE|L1 25516 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 179-20 chr7 21306545 21306717 + 1.5 NA Intergenic LTR8B|LTR|ERV1 -121452 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 237-16 chr22 39526998 39527236 + 1.5 NA Intergenic Intergenic 5631 NR_130151 91582 Hs.526933 NM_194326 ENSG00000187051 RPS19BP1 AROS|S19BP ribosomal protein S19 binding protein 1 protein-coding 384-18 chr2 123455982 123456323 + 1.5 NA Intergenic Intergenic -382671 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 283-10 chr11 18282351 18282726 + 1.5 NA intron (NM_181507, intron 21 of 22) FLAM_C|SINE|Alu 16274 NM_199161 6288 Hs.632144 NM_000331 ENSG00000173432 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 159.5-4 chr10 31388804 31388965 + 1.5 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) 10871 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 186-16 chr20 52962335 52962491 + 1.5 NA Intergenic L2b|LINE|L2 -9945 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 183.5-2 chr1 24435736 24435977 + 1.5 NA intron (NM_001322862, intron 3 of 12) MLT1A0|LTR|ERVL-MaLR 19831 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 397.5-21 chr3 24059993 24060402 + 1.5 NA Intergenic Intergenic 43050 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 327-43 chr7 54156161 54156439 + 1.5 NA Intergenic LTR78|LTR|ERV1 -174397 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 231-9 chr16 50401411 50401611 + 1.5 NA Intergenic Intergenic -6378 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 205.5-30 chr7 18765060 18765314 + 1.5 NA intron (NM_058176, intron 14 of 22) intron (NM_058176, intron 14 of 22) 255917 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 415.5-7 chr15 41752410 41752965 + 1.5 NA intron (NM_001164273, intron 17 of 23) AluSx|SINE|Alu -21797 NM_001128608 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 199.5-34 chr7 73987875 73988070 + 1.5 NA Intergenic Intergenic -39817 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 486-27 chr21 28549880 28550305 + 1.5 NA Intergenic Intergenic 10774 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 197-24 chr7 49286778 49286972 + 1.5 NA Intergenic HERVL40-int|LTR|ERVL 362328 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 489.5-12 chr20 55332917 55333366 + 1.5 NA Intergenic L2|LINE|L2 -89902 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 131-8 chr4 96956297 96956384 + 1.5 NA Intergenic Intergenic -410586 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 393-23 chr21 30693394 30693797 + 1.5 NA Intergenic L1MB1|LINE|L1 25182 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 243.5-14 chr17 75919602 75919882 + 1.5 NA exon (NM_001319193, exon 19 of 29) exon (NM_001319193, exon 19 of 29) -14642 NM_032478 64978 Hs.442609 NM_032478 ENSG00000204316 MRPL38 HSPC262|L38MT|MRP-L3|MRP-L38|RPML3 mitochondrial ribosomal protein L38 protein-coding 246.5-26 chr3 50292841 50293101 + 1.5 NA promoter-TSS (NM_006764) promoter-TSS (NM_006764) -376 NM_006764 7866 Hs.315177 NM_006764 ENSG00000214706 IFRD2 IFNRP|SKMc15|SM15 interferon related developmental regulator 2 protein-coding 509.5-15 chr7 130231343 130232092 + 1.5 NA Intergenic LTR1D|LTR|ERV1 23857 NM_145268 136263 Hs.351816 NM_145268 ENSG00000165120 SSMEM1 C7orf45 serine rich single-pass membrane protein 1 protein-coding 160.5-2 chr1 95180136 95180341 + 1.5 NA intron (NM_001199691, intron 6 of 7) intron (NM_001199691, intron 6 of 7) 53744 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 270.5-10 chr14 40983221 40983549 + 1.5 NA intron (NR_109758, intron 3 of 3) L1MA2|LINE|L1 28674 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 269.5-21 chr2 65026662 65026996 + 1.5 NA Intergenic Intergenic -29587 NM_001319100 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 225.5-25 chr21 27127881 27128139 + 1.5 NA Intergenic Intergenic -160922 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 205-4 chr10 32532641 32532852 + 1.5 NA intron (NR_109826, intron 11 of 16) L1M3f|LINE|L1 86606 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 294-30 chr5 27808678 27808921 + 1.5 NA Intergenic Intergenic 336507 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 432.5-11 chr2 41586494 41586956 + 1.5 NA Intergenic Intergenic -290830 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 273-28 chr4 70675415 70675735 + 1.5 NA Intergenic Intergenic -9067 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 493-16 chr2 30755907 30756329 + 1.5 NA intron (NM_144575, intron 8 of 22) intron (NM_144575, intron 8 of 22) 51328 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 596-10 chr3 82890622 82891142 + 1.5 NA Intergenic MLT2B5|LTR|ERVL 904740 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 458.5-8 chr17 47056096 47056508 + 1.5 NA Intergenic Intergenic -77049 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 284-4 chr1 239760951 239761310 + 1.5 NA intron (NM_000740, intron 3 of 4) L1MEc|LINE|L1 -42011 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 332-26 chr3 85828086 85828467 + 1.5 NA promoter-TSS (NR_046752) promoter-TSS (NR_046752) -226 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 152.5-12 chr12 39040118 39040344 + 1.5 NA Intergenic Intergenic -134640 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 494-9 chr17 76469477 76469946 + 1.5 NA exon (NM_001166579, exon 7 of 7) exon (NM_001166579, exon 7 of 7) 2108 NM_001088 15 Hs.431417 NM_001088 ENSG00000129673 AANAT DSPS|SNAT aralkylamine N-acetyltransferase protein-coding 189-25 chr8 125917671 125917895 + 1.5 NA Intergenic Intergenic 33414 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 205.5-25 chr6 36307585 36307757 + 1.5 NA exon (NM_001145716, exon 8 of 8) exon (NM_001145716, exon 8 of 8) 29217 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 341.5-14 chr18 12918248 12918598 + 1.5 NA Intergenic AluSz|SINE|Alu -29561 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 420.5 chr1 28996932 28997267 + 1.5 NA intron (NM_203343, intron 3 of 16) AluJr|SINE|Alu 82523 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 760.5 chr1 241661061 241661694 + 1.5 NA intron (NM_001367482, intron 2 of 27) intron (NM_001367482, intron 2 of 27) 9096 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 182-2 chr1 211846522 211846710 + 1.5 NA TTS (NR_135818) TTS (NR_135818) 15655 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 321.5-33 chr8 85116162 85116446 + 1.5 NA intron (NM_033402, intron 6 of 18) intron (NM_033402, intron 6 of 18) 9066 NM_001349637 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 320-36 chr8 105567214 105567659 + 1.5 NA intron (NM_001362837, intron 4 of 7) LTR16C|LTR|ERVL 247893 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 163-3 chr11 114064655 114064816 + 1.5 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 1524 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 230.5-5 chr1 176596601 176596925 + 1.5 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 133588 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 239.5-15 chr3 131587576 131587905 + 1.5 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -84769 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 268-29 chr8 130573137 130573389 + 1.5 NA Intergenic MLT2A2|LTR|ERVL -129589 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 417-6 chr10 6621622 6622077 + 1.5 NA non-coding (NR_120634, exon 3 of 6) non-coding (NR_120634, exon 3 of 6) 3133 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 259.5-30 chr4 87159272 87159652 + 1.5 NA TTS (NR_120447) TTS (NR_120447) 60806 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 407-37 chrX 83817384 83817874 + 1.5 NA Intergenic L1PA11|LINE|L1 -43497 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 216-18 chr3 81636987 81637265 + 1.5 NA intron (NM_000158, intron 7 of 15) MER44D|DNA|TcMar-Tigger 124519 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 216-5 chr12 53717519 53717681 + 1.5 NA intron (NR_026554, intron 6 of 13) intron (NR_026554, intron 6 of 13) 9852 NM_001143682 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 490.5-2 chr10 18365355 18365979 + 1.5 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) 24958 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 179.5-8 chr2 103030932 103031153 + 1.5 NA Intergenic Intergenic -46613 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 441-19 chr2 108871840 108872222 + 1.5 NA intron (NR_147237, intron 13 of 14) HAL1b|LINE|L1 85260 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 247-26 chr8 42821962 42822298 + 1.5 NA Intergenic Intergenic 21195 NM_018105 55145 Hs.7432 NM_018105 ENSG00000131931 THAP1 DYT6 THAP domain containing 1 protein-coding 470-13 chr14 44774254 44774832 + 1.5 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 24583 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 311.5-7 chr1 226070687 226070963 + 1.5 NA intron (NM_002107, intron 3 of 3) intron (NM_002107, intron 3 of 3) 8098 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 156-2 chr1 112738864 112738981 + 1.5 NA Intergenic LTR78|LTR|ERV1 18355 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 202-2 chr12 63940033 63940311 + 1.5 NA intron (NM_001346201, intron 1 of 21) AluSx1|SINE|Alu 95472 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 324.5-21 chr19 29629794 29630161 + 1.5 NA Intergenic Intergenic 23694 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 145.5-2 chr1 38308488 38308643 + 1.5 NA Intergenic L1ME3B|LINE|L1 -93798 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 187.5-23 chr5 15737576 15737777 + 1.5 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -122674 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 381-18 chr4 144891400 144891697 + 1.5 NA Intergenic LTR67B|LTR|ERVL 205834 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 180.5-9 chr20 48011425 48011632 + 1.5 NA Intergenic Intergenic -21411 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 227-34 chr7 85087788 85087939 + 1.5 NA intron (NM_152754, intron 2 of 16) intron (NM_152754, intron 2 of 16) 34068 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 241.5-21 chr20 62121248 62121437 + 1.5 NA Intergenic AluSx1|SINE|Alu -1133 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 523-11 chr14 81740822 81741284 + 1.5 NA intron (NR_146498, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR 2085 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 309-38 chr6 43531098 43531426 + 1.5 NA intron (NR_144392, intron 23 of 32) intron (NR_144392, intron 23 of 32) 14173 NM_001363658 9533 Hs.743509 NM_004875 ENSG00000171453 POLR1C AC40|HLD11|RPA39|RPA40|RPA5|RPAC1|RPC40|TCS3 RNA polymerase I and III subunit C protein-coding 225-30 chr6 108051518 108051684 + 1.5 NA intron (NM_014028, intron 3 of 5) intron (NM_014028, intron 3 of 5) 23140 NM_014028 28962 Hs.226780 NM_014028 ENSG00000081087 OSTM1 GIPN|GL|HSPC019|OPTB5 osteoclastogenesis associated transmembrane protein 1 protein-coding 378-5 chr12 17412899 17413397 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 175930 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 266.5-2 chr1 185032912 185033217 + 1.5 NA Intergenic Intergenic -12494 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 330-32 chr3 185034394 185034853 + 1.5 NA intron (NM_001009921, intron 45 of 46) (TTG)n|Simple_repeat|Simple_repeat 118437 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 344.5-7 chr12 6455950 6456292 + 1.5 NA intron (NR_147129, intron 3 of 7) L1MC4|LINE|L1 4079 NR_147128 55080 Hs.504597 NM_018009 ENSG00000139192 TAPBPL TAPBP-R|TAPBPR TAP binding protein like protein-coding 187-10 chr18 64039420 64039629 + 1.5 NA Intergenic Intergenic -64567 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 434.5-10 chr22 32357092 32357524 + 1.5 NA promoter-TSS (NM_001098535) promoter-TSS (NM_001098535) -559 NM_001098535 10738 Hs.558455 NM_006604 ENSG00000128276 RFPL3 RNF120 ret finger protein like 3 protein-coding 141.5-7 chr12 78133148 78133305 + 1.5 NA intron (NM_001024383, intron 18 of 39) intron (NM_001024383, intron 18 of 39) 226520 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 305-44 chr7 41746586 41746974 + 1.5 NA intron (NR_027118, intron 2 of 3) MER41-int|LTR|ERV1 -43690 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 271.5-38 chr7 20289303 20289627 + 1.5 NA Intergenic Intergenic -7243 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 394.5-4 chr1 70642579 70642858 + 1.5 NA Intergenic Intergenic -63735 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 195-7 chr14 57302442 57302628 + 1.5 NA Intergenic Intergenic 33564 NM_018229 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 328.5-7 chr11 82106347 82106590 + 1.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -215632 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 213-2 chr1 71610907 71611209 + 1.5 NA exon (NM_173808, exon 5 of 7) exon (NM_173808, exon 5 of 7) 225954 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 195.5-17 chr2 65899915 65900180 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 458281 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 375.5-12 chr17 75042109 75042449 + 1.5 NA intron (NM_001003785, intron 2 of 4) intron (NM_001003785, intron 2 of 4) 4690 NM_006356 10476 Hs.514465 NM_006356 ENSG00000167863 ATP5PD APT5H|ATP5H|ATPQ ATP synthase peripheral stalk subunit d protein-coding 289.5-38 chr8 112381360 112381647 + 1.5 NA intron (NM_001363185, intron 33 of 66) intron (NM_001363185, intron 33 of 66) -261990 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 292-17 chr2 10876183 10876426 + 1.5 NA Intergenic AluSx|SINE|Alu -1963 NR_110575 101929733 Hs.736697 NR_110575 ENSG00000271952 LINC01954 - long intergenic non-protein coding RNA 1954 ncRNA 352.5-25 chr5 116944130 116944463 + 1.5 NA Intergenic Intergenic -182087 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 243.5-34 chr8 127892185 127892398 + 1.5 NA intron (NR_003367, intron 2 of 8) L2c|LINE|L2 56432 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 241-11 chr2 148764445 148764742 + 1.5 NA intron (NM_015630, intron 6 of 13) intron (NM_015630, intron 6 of 13) -110634 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 157 chr1 65379596 65379815 + 1.5 NA intron (NM_001256864, intron 5 of 18) intron (NM_001256864, intron 5 of 18) -40947 NM_001003680 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 217-13 chr2 5165122 5165349 + 1.5 NA Intergenic Intergenic -509013 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 205-18 chr18 23111122 23111279 + 1.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -23364 NR_023359 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 244.5-26 chr22 31197089 31197426 + 1.5 NA intron (NR_024210, intron 5 of 6) L1ME4a|LINE|L1 -15041 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 259.5-8 chr12 114008948 114009300 + 1.5 NA Intergenic L2c|LINE|L2 -42799 NM_001146698 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 305.5-39 chr7 116284516 116284772 + 1.5 NA intron (NR_130922, intron 2 of 3) intron (NR_130922, intron 2 of 3) 2020 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 197.5-15 chr15 39658428 39658727 + 1.5 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 77498 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 230.5-25 chr18 56386731 56386885 + 1.5 NA Intergenic Intergenic -195546 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 195-24 chr8 118108250 118108547 + 1.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 3421 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 316-33 chr5 88700847 88701135 + 1.5 NA intron (NR_146284, intron 1 of 3) intron (NR_146284, intron 1 of 3) -9950 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 389.5-5 chr1 114779452 114779889 + 1.5 NA intron (NR_049742, intron 1 of 3) intron (NR_049742, intron 1 of 3) 1015 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 188-12 chr20 22303794 22303989 + 1.5 NA Intergenic L2a|LINE|L2 -21090 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 162.5-20 chr7 33519280 33519482 + 1.5 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -385534 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 142.5-12 chr3 143151053 143151164 + 1.5 NA Intergenic Intergenic 31337 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 313-27 chr5 1516688 1517102 + 1.5 NA intron (NM_024830, intron 1 of 13) intron (NM_024830, intron 1 of 13) -6039 NR_106723 102466103 NR_106723 ENSG00000273742 MIR6075 hsa-mir-6075 microRNA 6075 ncRNA 334.5-3 chr1 182088403 182088666 + 1.5 NA Intergenic Intergenic -26822 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 297-19 chr20 47614183 47614537 + 1.5 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 112473 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 305.5-45 chrX 83551206 83551689 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 43157 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 150-4 chr20 45410311 45410421 + 1.5 NA non-coding (NR_003189, exon 6 of 6) non-coding (NR_003189, exon 6 of 6) 2377 NM_001048225 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 353-31 chr5 20399286 20399557 + 1.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 93870 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 240.5-18 chr5 43991792 43991992 + 1.5 NA Intergenic Intergenic -388662 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 419.5-3 chr10 53841242 53841621 + 1.5 NA intron (NM_001354411, intron 29 of 34) intron (NM_001354411, intron 29 of 34) -644799 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 258.5-24 chr5 168723746 168724047 + 1.5 NA intron (NM_003062, intron 21 of 35) MER5B|DNA|hAT-Charlie 16969 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 348-18 chr18 79738670 79738981 + 1.5 NA intron (NM_004715, intron 12 of 12) intron (NM_004715, intron 12 of 12) 57395 NM_001202504 9150 Hs.465490 NM_004715 ENSG00000060069 CTDP1 CCFDN|FCP1 CTD phosphatase subunit 1 protein-coding 269-2 chr1 183845767 183846100 + 1.5 NA intron (NM_001297671, intron 2 of 17) L1P3|LINE|L1 40813 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 311.5-42 chr8 82447959 82448297 + 1.5 NA Intergenic L1PA15|LINE|L1 -463976 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 383-26 chr4 26212884 26213219 + 1.5 NA Intergenic MER21A|LTR|ERVL -106659 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 208.5-24 chr5 39213237 39213533 + 1.5 NA intron (NM_001349333, intron 1 of 19) intron (NM_001349333, intron 1 of 19) 6178 NM_001349333 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 566-2 chr11 39517494 39517995 + 1.5 NA Intergenic Intergenic 775386 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 281.5-5 chr12 23531438 23531676 + 1.5 NA 3' UTR (NM_178010, exon 7 of 7) 3' UTR (NM_178010, exon 7 of 7) 53029 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 220.5-17 chr22 31130516 31130663 + 1.5 NA intron (NM_001002837, intron 9 of 12) intron (NM_001002837, intron 9 of 12) 7623 NM_001284285 27124 Hs.517549 NM_014422 ENSG00000185133 INPP5J INPP5|PIB5PA|PIPP inositol polyphosphate-5-phosphatase J protein-coding 267.5-9 chr17 43194415 43194833 + 1.5 NA intron (NM_005899, intron 13 of 20) intron (NM_005899, intron 13 of 20) -17251 NM_001291587 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 295.5-6 chr11 77084539 77084900 + 1.5 NA intron (NM_004055, intron 1 of 12) MIRb|SINE|MIR 17748 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 286-28 chr5 117012506 117012813 + 1.5 NA Intergenic L1PA13|LINE|L1 -250450 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 429-19 chr2 54063747 54064394 + 1.5 NA intron (NM_001320587, intron 3 of 5) FLAM_C|SINE|Alu -51545 NM_001320590 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 269.5-51 chr8 89134666 89134992 + 1.5 NA Intergenic L1MD|LINE|L1 622882 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 313-17 chr19 30579740 30580125 + 1.5 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 207548 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 430-20 chr3 132111768 132112308 + 1.5 NA Intergenic L1MA3|LINE|L1 -72432 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 198-3 chr11 25804085 25804354 + 1.5 NA Intergenic Intergenic -384904 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 567.5-8 chr17 29678275 29678853 + 1.5 NA intron (NM_033389, intron 5 of 14) intron (NM_033389, intron 5 of 14) -57141 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 411-6 chr10 49497861 49498184 + 1.5 NA intron (NM_001346440, intron 7 of 20) intron (NM_001346440, intron 7 of 20) 26259 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 335-7 chr12 1792977 1793475 + 1.5 NA 3' UTR (NM_172364, exon 38 of 38).2 3' UTR (NM_172364, exon 38 of 38).2 -27041 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 244-12 chr17 39518328 39518596 + 1.5 NA intron (NM_015083, intron 10 of 13) intron (NM_015083, intron 10 of 13) 56976 NM_016507 51755 Hs.345028 NM_015083 ENSG00000167258 CDK12 CRK7|CRKR|CRKRS cyclin dependent kinase 12 protein-coding 531-9 chr14 53541502 53541987 + 1.5 NA Intergenic Intergenic 388390 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 440-22 chr22 40940430 40941007 + 1.5 NA Intergenic AluSx1|SINE|Alu -10660 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 333-40 chr8 81930133 81930556 + 1.5 NA Intergenic Intergenic -88058 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 346.5-8 chr16 25356288 25356628 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -98613 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 394-20 chr4 57455102 57455461 + 1.5 NA intron (NR_125907, intron 4 of 5) L1MB1|LINE|L1 29409 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 328-13 chr14 51473854 51474202 + 1.5 NA intron (NR_051990, intron 2 of 2) MIRb|SINE|MIR -15100 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 232.5-26 chr5 40121460 40121709 + 1.5 NA Intergenic MER52-int|LTR|ERV1 69293 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 531-14 chr19 28688732 28689275 + 1.5 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 38691 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 247-10 chr2 44716139 44716460 + 1.5 NA intron (NM_024766, intron 7 of 10) intron (NM_024766, intron 7 of 10) 222589 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 341.5-33 chr8 18362428 18362802 + 1.5 NA Intergenic Intergenic -28667 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 333-15 chr2 73372328 73372603 + 1.5 NA Intergenic Ricksha_c|DNA|MULE-MuDR -13293 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 279.5-17 chr7 7968465 7968708 + 1.5 NA promoter-TSS (NM_138426) promoter-TSS (NM_138426) 166 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 153-6 chr15 83603445 83603565 + 1.5 NA intron (NM_001324185, intron 9 of 9) MLT1A0-int|LTR|ERVL-MaLR -50618 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 328.5-16 chr17 76738344 76738639 + 1.5 NA intron (NM_001353019, intron 2 of 13) intron (NM_001353019, intron 2 of 13) 990 NM_024311 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 179-4 chr11 22194863 22195102 + 1.5 NA intron (NM_001142649, intron 1 of 21) L1MB7|LINE|L1 1806 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 434-28 chr8 88010010 88010338 + 1.5 NA Intergenic Intergenic -136159 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 525-9 chr18 64294332 64294841 + 1.5 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -34531 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 294-6 chr1 216870478 216870731 + 1.5 NA intron (NM_001243507, intron 2 of 7) L1ME1|LINE|L1 -65219 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 212.5-7 chr11 19192814 19193141 + 1.5 NA intron (NM_003476, intron 1 of 5) MER5A1|DNA|hAT-Charlie 9006 NM_003476 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 477.5-22 chr6 65085431 65085805 + 1.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -215800 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 236-33 chr7 82236368 82236703 + 1.5 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 207242 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 302.5-21 chr2 207554429 207554785 + 1.5 NA intron (NR_163946, intron 1 of 8) intron (NR_163946, intron 1 of 8) -4515 NM_001371428 250.5-8 chr12 6216213 6216531 + 1.5 NA intron (NM_001769, intron 1 of 7) intron (NM_001769, intron 1 of 7) 15972 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 287.5-21 chr4 69470291 69470633 + 1.5 NA Intergenic Intergenic 25443 NM_021139 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 132.5-19 chr7 18638359 18638456 + 1.5 NA intron (NM_058176, intron 7 of 22) intron (NM_058176, intron 7 of 22) 129137 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 196.5-15 chr2 18957997 18958151 + 1.5 NA Intergenic Intergenic 68897 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 302-31 chr7 111903645 111903951 + 1.5 NA intron (NM_001363540, intron 13 of 52) intron (NM_001363540, intron 13 of 52) 95293 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 174-28 chr6 170114006 170114268 + 1.5 NA Intergenic (ATCTGT)n|Simple_repeat|Simple_repeat -46505 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 243-24 chr3 3906562 3906839 + 1.5 NA Intergenic THE1A|LTR|ERVL-MaLR -105825 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 270-6 chr11 38400331 38400579 + 1.5 NA Intergenic Intergenic 245901 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 300-29 chr7 116097375 116097627 + 1.5 NA Intergenic MER44B|DNA|TcMar-Tigger -66738 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 403-26 chr2 202450236 202450531 + 1.5 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 74056 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 369-11 chr11 42426448 42426759 + 1.5 NA Intergenic Intergenic -172913 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 295-9 chr12 50680814 50681068 + 1.5 NA intron (NM_173602, intron 9 of 37) intron (NM_173602, intron 9 of 37) -83160 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 284.5-46 chr9 134837406 134837663 + 1.5 NA intron (NM_001278074, intron 65 of 65) intron (NM_001278074, intron 65 of 65) 11835 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 416-5 chr10 113430911 113431257 + 1.5 NA Intergenic Intergenic -119747 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 240-26 chr2 151381014 151381291 + 1.5 NA Intergenic MER39|LTR|ERV1 -1781 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 232-26 chr5 171956560 171956809 + 1.5 NA intron (NM_033644, intron 1 of 12) intron (NM_033644, intron 1 of 12) 50189 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 134.5-20 chr6 64098857 64098968 + 1.5 NA intron (NM_001292009, intron 31 of 43) L1ME3E|LINE|L1 292076 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 208.5-15 chr2 199036540 199036798 + 1.5 NA Intergenic Intergenic 421270 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 322.5-29 chr7 110290705 110291077 + 1.5 NA Intergenic Intergenic -330678 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 232-23 chr4 93068446 93068687 + 1.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) -760187 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 370-33 chr8 107162194 107162527 + 1.5 NA Intergenic Intergenic 174155 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 223-28 chr7 8206438 8206674 + 1.5 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 55496 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 297-16 chr2 95301645 95301978 + 1.5 NA intron (NM_013434, intron 1 of 8) intron (NM_013434, intron 1 of 8) 4464 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 424-16 chr3 116082530 116082841 + 1.5 NA intron (NM_001318915, intron 2 of 8) L1PA14|LINE|L1 -177559 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 390.5-25 chr5 153269804 153270316 + 1.5 NA Intergenic AluJr|SINE|Alu -220464 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 124.5-8 chr20 35434714 35434826 + 1.5 NA TTS (NR_161326) TTS (NR_161326) 1741 NR_161326 554250 Hs.711481 NM_001350519 ENSG00000204183 GDF5OS - growth differentiation factor 5 opposite strand ncRNA 205 chr1 102034321 102034586 + 1.5 NA Intergenic Intergenic -37219 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 467-20 chr5 177290812 177291263 + 1.5 NA intron (NM_172349, intron 22 of 23) intron (NM_172349, intron 22 of 23) 12682 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 426-26 chr3 97937584 97938302 + 1.5 NA intron (NM_153605, intron 19 of 21) intron (NM_153605, intron 19 of 21) 34488 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 270.5-7 chr11 64528791 64529219 + 1.5 NA Intergenic AluJb|SINE|Alu -26936 NM_018484 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 249-24 chr3 32677880 32678169 + 1.5 NA Intergenic Intergenic -7164 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 341.5-4 chr10 123558415 123558879 + 1.5 NA Intergenic Intergenic -107708 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 327-13 chr14 29463230 29463497 + 1.5 NA Intergenic Intergenic 463733 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 203-14 chr2 200580667 200580812 + 1.5 NA TTS (NM_001160046) TTS (NM_001160046) -5275 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 394.5-25 chr6 125137167 125137484 + 1.5 NA Intergenic Intergenic -16448 NM_003287 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 176.5-13 chr2 218743507 218743689 + 1.5 NA intron (NM_014640, intron 5 of 19) L1MD1|LINE|L1 32763 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 519 chr1 88529042 88529538 + 1.5 NA Intergenic Intergenic -154854 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 288-39 chr8 116965540 116965969 + 1.5 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 14779 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 615.5 chr1 183321771 183322392 + 1.5 NA intron (NM_015039, intron 1 of 10) AluJb|SINE|Alu -17207 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 177-12 chr20 7712807 7713021 + 1.5 NA Intergenic L1M6|LINE|L1 227544 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 246.5-27 chr3 66568260 66568470 + 1.5 NA Intergenic L1PA10|LINE|L1 -67944 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 415-17 chr19 33403468 33403823 + 1.5 NA intron (NM_001166056, intron 9 of 12) intron (NM_001166056, intron 9 of 12) 29121 NM_001252296 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 499-17 chr5 67980837 67981322 + 1.5 NA Intergenic Intergenic 187866 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 404-31 chr7 10146334 10146649 + 1.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 512221 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 342-9 chr12 83348336 83348797 + 1.5 NA Intergenic Intergenic 661411 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 199-15 chr3 72474555 72474819 + 1.5 NA Intergenic L1MB7|LINE|L1 -28064 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 278-13 chr18 6532626 6532823 + 1.5 NA intron (NR_120518, intron 2 of 5) MLT1C|LTR|ERVL-MaLR 21308 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 302-12 chr2 17730427 17730686 + 1.5 NA intron (NM_024624, intron 6 of 26) intron (NM_024624, intron 6 of 26) 23254 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 272.5-33 chr6 151703603 151703959 + 1.5 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) 13285 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 209.5-8 chr12 33904985 33905180 + 1.5 NA Intergenic Intergenic -117414 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 407.5-19 chr7 34011374 34011809 + 1.5 NA intron (NM_133468, intron 7 of 15) (A)n|Simple_repeat|Simple_repeat 106052 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 269-35 chr8 113475810 113476126 + 1.5 NA Intergenic LOR1-int|LTR|ERV1 -39029 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 250-29 chr3 84603197 84603612 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB 266171 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 202.5-19 chr4 63623752 63623989 + 1.5 NA Intergenic Intergenic 785580 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 297-2 chr1 108783706 108784045 + 1.5 NA intron (NM_007269, intron 11 of 18) L1ME3|LINE|L1 37201 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 469.5-20 chr8 110942852 110943276 + 1.5 NA intron (NR_125417, intron 5 of 5) L1MA4|LINE|L1 84369 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 133-2 chr16 73958998 73959095 + 1.5 NA Intergenic Intergenic 256475 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 343.5-25 chr3 20943303 20943627 + 1.5 NA Intergenic MIR3|SINE|MIR -462261 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 294-27 chr3 128635430 128635692 + 1.5 NA intron (NM_002950, intron 3 of 9) AluSz6|SINE|Alu 15257 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 212.5 chr1 66361079 66361293 + 1.5 NA intron (NM_001037339, intron 2 of 9) intron (NM_001037339, intron 2 of 9) 6651 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 292-10 chr16 55693369 55693563 + 1.5 NA intron (NM_001172504, intron 5 of 13) MIRc|SINE|MIR 21795 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 383-3 chr1 240390260 240390515 + 1.5 NA intron (NM_020066, intron 14 of 17) intron (NM_020066, intron 14 of 17) 221768 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 206-15 chr3 152949553 152949856 + 1.5 NA Intergenic Intergenic 114573 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 287.5-31 chrX 40984111 40984395 + 1.5 NA Intergenic Intergenic -101192 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 324.5-12 chr12 13662995 13663297 + 1.5 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -286401 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 383-12 chr14 63215537 63215937 + 1.5 NA intron (NM_020663, intron 1 of 4) L2a|LINE|L2 11294 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 424-6 chr15 81339692 81340127 + 1.5 NA intron (NM_001080532, intron 16 of 21) intron (NM_001080532, intron 16 of 21) 15576 NR_120365 101929655 Hs.696654 NR_120365 TMC3-AS1 - TMC3 antisense RNA 1 ncRNA 202-6 chr16 14169037 14169291 + 1.5 NA intron (NM_001308142, intron 3 of 16) L1ME2z|LINE|L1 -17522 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 383-11 chr14 43734773 43735188 + 1.5 NA Intergenic Intergenic 772303 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 289.5-37 chr7 116068347 116068797 + 1.5 NA Intergenic Intergenic -37809 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 401.5-30 chr7 14006380 14006932 + 1.5 NA Intergenic MARNA|DNA|TcMar-Mariner -15231 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 182.5-28 chr5 157292529 157292684 + 1.5 NA intron (NM_001291721, intron 3 of 29) L1MB7|LINE|L1 23282 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 310.5-27 chr2 156676396 156676645 + 1.5 NA Intergenic Intergenic 240141 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 152.5-9 chr11 76324063 76324198 + 1.5 NA Intergenic Intergenic 56835 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 471-13 chr14 79294221 79294750 + 1.5 NA intron (NM_001105250, intron 1 of 6) MIRc|SINE|MIR 15105 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 166-9 chr4 45136383 45136615 + 1.5 NA Intergenic Intergenic -409865 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 365.5-12 chr22 48480009 48480632 + 1.5 NA Intergenic L1ME1|LINE|L1 -9233 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 379 chr1 10578653 10579082 + 1.5 NA intron (NM_004565, intron 3 of 8) L1MEf|LINE|L1 103917 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 239.5-28 chr9 27257802 27258028 + 1.5 NA intron (NR_026679, intron 15 of 16) MIRc|SINE|MIR 24878 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 293-27 chr6 158158185 158158502 + 1.5 NA non-coding (NR_073096, exon 2 of 13) non-coding (NR_073096, exon 2 of 13) 9919 NR_073096 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 213-16 chr6 64303961 64304196 + 1.5 NA intron (NM_001292009, intron 30 of 43) LTR22B1|LTR|ERVK 497242 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 183-9 chr16 14372937 14373118 + 1.5 NA Intergenic Intergenic -2761 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 365-41 chrX 114769560 114769958 + 1.5 NA intron (NM_001256760, intron 5 of 6) L1M4|LINE|L1 6575 NR_031732 100302222 NR_031732 ENSG00000222715 MIR1911 MIRN1911|hsa-mir-1911|mir-1911 microRNA 1911 ncRNA 367-8 chr10 114712384 114712704 + 1.5 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -27541 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 139-7 chr4 174505326 174505424 + 1.5 NA intron (NM_001256306, intron 2 of 4) intron (NM_001256306, intron 2 of 4) 17113 NM_001363574 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 322-7 chr12 71277193 71277468 + 1.5 NA Intergenic L2c|LINE|L2 -119331 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 148.5-5 chr1 206444269 206444381 + 1.5 NA intron (NM_015326, intron 16 of 21) intron (NM_015326, intron 16 of 21) -26151 NM_001193321 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 256.5-17 chr2 14656781 14657064 + 1.5 NA Intergenic MIRb|SINE|MIR 24205 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 255-28 chr6 132332865 132333100 + 1.5 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 68493 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 152-7 chr20 44590892 44591043 + 1.5 NA intron (NM_007066, intron 2 of 3) intron (NM_007066, intron 2 of 3) 8388 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 122-3 chr6 71642167 71642300 + 1.5 NA Intergenic Intergenic 221206 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 265-38 chr9 3360797 3361093 + 1.5 NA intron (NM_134428, intron 3 of 17) intron (NM_134428, intron 3 of 17) 34651 NM_002919 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 801-2 chr10 100308219 100309311 + 1.5 NA intron (NM_016112, intron 2 of 15) intron (NM_016112, intron 2 of 15) 21463 NM_016112 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 283.5-16 chr19 38685562 38685832 + 1.5 NA intron (NM_001322033, intron 1 of 20).2 intron (NM_001322033, intron 1 of 20).2 38048 NM_001322033 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 287-47 chrX 81978535 81978958 + 1.5 NA Intergenic MER57-int|LTR|ERV1 776644 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 281.5-23 chr4 63397485 63397887 + 1.5 NA Intergenic L1MEg|LINE|L1 1011764 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 272-43 chrX 154360355 154360693 + 1.5 NA exon (NM_001456, exon 22 of 47) exon (NM_001456, exon 22 of 47) 14110 NM_001110556 2316 Hs.195464 NM_001456 ENSG00000196924 FLNA ABP-280|ABPX|CSBS|CVD1|FGS2|FLN|FLN-A|FLN1|FMD|MNS|NHBP|OPD|OPD1|OPD2|XLVD|XMVD filamin A protein-coding 359.5-38 chr8 124142806 124143101 + 1.5 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 28569 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 504-17 chr4 48754916 48755432 + 1.5 NA intron (NM_015030, intron 1 of 63) L3|LINE|CR1 25125 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 334.5-25 chr4 87011029 87011315 + 1.5 NA intron (NM_001313960, intron 1 of 17) intron (NM_001313960, intron 1 of 17) 4171 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 233.5-24 chr5 67202931 67203190 + 1.5 NA Intergenic Intergenic -6261 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 438 chr1 80566293 80566722 + 1.5 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 30752 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 431.5-19 chr7 25092342 25092805 + 1.5 NA Intergenic MIRb|SINE|MIR 32788 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 291-27 chr7 131713446 131713640 + 1.5 NA Intergenic L1ME1|LINE|L1 -156915 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 219.5 chr1 11174744 11175001 + 1.5 NA intron (NM_004958, intron 28 of 57) intron (NM_004958, intron 28 of 57) -14483 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 272-19 chr2 189855630 189855924 + 1.5 NA intron (NM_001128144, intron 9 of 11) intron (NM_001128144, intron 9 of 11) 71327 NM_001128144 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 276.5-16 chr17 59298845 59299194 + 1.5 NA Intergenic L2a|LINE|L2 -32636 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 397-27 chr5 79123803 79124322 + 1.5 NA intron (NM_001713, intron 5 of 7) L1MB4|LINE|L1 12253 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 228.5-17 chr2 143219438 143219691 + 1.5 NA intron (NM_018460, intron 4 of 13) L1ME5|LINE|L1 90145 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 372.5-13 chr2 179732726 179733168 + 1.5 NA intron (NM_001352815, intron 1 of 8) intron (NM_001352815, intron 1 of 8) 12719 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 209-9 chr14 22410654 22410847 + 1.5 NA intron (NR_148362, intron 1 of 5) MLT1I|LTR|ERVL-MaLR 22003 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 498.5-18 chr8 97239163 97239576 + 1.5 NA intron (NR_125390, intron 2 of 2) L4_C_Mam|LINE|RTE-X 38559 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 145.5 chr1 24293613 24293763 + 1.5 NA Intergenic Intergenic -25669 NM_198173 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 490 chr10 23946014 23946474 + 1.5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 251517 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 297-3 chr1 217065044 217065301 + 1.5 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 11820 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 233-10 chr14 69038250 69038525 + 1.5 NA Intergenic Intergenic 58705 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 205-20 chr2 43540052 43540192 + 1.5 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 55852 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 224-30 chr9 74101329 74101522 + 1.5 NA Intergenic Intergenic -270106 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 238 chr1 37113378 37113552 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -48098 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 466-10 chr14 19952564 19952946 + 1.5 NA Intergenic Intergenic 17147 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 275.5-34 chr8 33910866 33911171 + 1.5 NA Intergenic L1MA8|LINE|L1 -310912 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 335-16 chr15 83867453 83867773 + 1.5 NA intron (NM_207517, intron 8 of 29) intron (NM_207517, intron 8 of 29) -212574 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 345-28 chr4 14644476 14644844 + 1.5 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 243509 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 161-17 chr7 128276134 128276357 + 1.5 NA Intergenic Intergenic 34967 NM_000230 3952 Hs.194236 NM_000230 ENSG00000174697 LEP LEPD|OB|OBS leptin protein-coding 396.5-15 chr2 67626609 67627154 + 1.5 NA Intergenic Intergenic 198681 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 332-18 chr2 177376922 177377294 + 1.5 NA intron (NR_026966, intron 1 of 8) intron (NR_026966, intron 1 of 8) 15583 NR_026966 100130691 Hs.707723 NM_182585 ENSG00000213963 LOC100130691 - uncharacterized LOC100130691 ncRNA 230.5-21 chr14 58241096 58241427 + 1.5 NA Intergenic Intergenic -3544 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 313-31 chr6 154154417 154154706 + 1.5 NA TTS (NM_001130700) TTS (NM_001130700) 64799 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 140-8 chr3 67046419 67046574 + 1.5 NA Intergenic Charlie15b|DNA|hAT-Charlie 48189 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 531-34 chrX 68123089 68123534 + 1.5 NA intron (NM_002547, intron 15 of 24) L1M1|LINE|L1 310184 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 309-30 chr4 83456051 83456464 + 1.5 NA promoter-TSS (NM_133636) promoter-TSS (NM_133636) 199 NM_016067 51023 Hs.334772 NM_016067 ENSG00000163319 MRPS18C CGI-134|MRP-S18-1|MRP-S18-c|MRPS18-1|S18mt-c|mrps18-c mitochondrial ribosomal protein S18C protein-coding 483-7 chr11 87550169 87550738 + 1.5 NA Intergenic L1PA13|LINE|L1 168958 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 140-3 chr10 13951980 13952115 + 1.5 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 19849 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 298-11 chr17 79976414 79976726 + 1.5 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) -25717 NM_001271844 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 322.5-18 chr20 40800642 40800983 + 1.5 NA Intergenic MIRb|SINE|MIR -86189 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 123-2 chr1 188894862 188894987 + 1.5 NA Intergenic Intergenic 1451296 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 404.5-21 chr7 48005508 48005829 + 1.5 NA intron (NM_001030019, intron 6 of 9) intron (NM_001030019, intron 6 of 9) 23439 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 291.5-13 chr2 176666044 176666403 + 1.5 NA Intergenic Intergenic 28469 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 283-12 chr12 58461289 58461516 + 1.5 NA Intergenic Intergenic -130300 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 302.5-40 chr8 129445851 129446283 + 1.5 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 38075 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 269.5-48 chr7 54363092 54363500 + 1.5 NA Intergenic Intergenic 32599 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 419.5-12 chr2 134952645 134953318 + 1.5 NA intron (NR_135468, intron 9 of 9) MIR3|SINE|MIR 34159 NM_001320748 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 254-34 chr5 149783041 149783370 + 1.5 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 11265 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 360.5-11 chr2 107112396 107112786 + 1.5 NA Intergenic L1MC3|LINE|L1 -225482 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 325-37 chr9 36298696 36299165 + 1.5 NA Intergenic Intergenic -21874 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 333-17 chr2 130783026 130783346 + 1.5 NA Intergenic AluSx|SINE|Alu 26842 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 321.5-32 chr8 46045438 46045705 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 572072 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 218-14 chr16 7251873 7252188 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -80815 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 567.5-13 chr6 15812543 15813073 + 1.5 NA Intergenic Intergenic -149750 NM_001271669 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 178-15 chr5 130530271 130530506 + 1.5 NA Intergenic Intergenic 625923 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 357.5-2 chr11 21784458 21784874 + 1.5 NA Intergenic Intergenic -408419 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 372.5-22 chr5 32307043 32307471 + 1.5 NA intron (NM_001294344, intron 1 of 13) intron (NM_001294344, intron 1 of 13) 5682 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 525-2 chr10 22302246 22302718 + 1.5 NA Intergenic Intergenic -13901 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 412-35 chr9 86484763 86485119 + 1.5 NA Intergenic AluSx1|SINE|Alu -130531 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 419.5-8 chr15 68920692 68921034 + 1.5 NA Intergenic AluSz6|SINE|Alu -9637 NR_033671 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 336-36 chr3 84425466 84425756 + 1.5 NA Intergenic Intergenic 443964 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 270-26 chr5 114974523 114974725 + 1.5 NA Intergenic L1MC4a|LINE|L1 195284 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 256.5-33 chr8 139983813 139984200 + 1.5 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 116529 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 380-8 chr19 44479861 44480183 + 1.5 NA intron (NM_001278508, intron 2 of 3) intron (NM_001278508, intron 2 of 3) 20500 NM_001278509 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 190.5-8 chr14 73296560 73296725 + 1.5 NA intron (NM_001005743, intron 7 of 12) intron (NM_001005743, intron 7 of 12) -50641 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 167.5-25 chr7 72464049 72464240 + 1.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -17001 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 483-6 chr11 9502463 9503046 + 1.5 NA intron (NM_001282656, intron 11 of 15) L1MB7|LINE|L1 41742 NM_003442 7702 Hs.523471 NM_003442 ENSG00000166478 ZNF143 SBF|STAF|pHZ-1 zinc finger protein 143 protein-coding 144-3 chr15 56812784 56812894 + 1.5 NA Intergenic Intergenic -78753 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 675-6 chr3 177634265 177634742 + 1.5 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -182362 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 220.5-12 chr14 65339930 65340187 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -4875 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 279-20 chr20 55238517 55238860 + 1.5 NA Intergenic Intergenic -184355 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 343-24 chr4 84822567 84822900 + 1.5 NA intron (NM_014991, intron 10 of 67) AluJr4|SINE|Alu -142883 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 243-31 chr7 36757895 36758102 + 1.5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -33449 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 214.5-24 chr5 12900363 12900597 + 1.5 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 132406 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 526.5-2 chr1 155342164 155342781 + 1.5 NA intron (NM_018489, intron 24 of 27) intron (NM_018489, intron 24 of 27) 3973 NR_030282 693140 NR_030282 ENSG00000283701 MIR555 MIRN555|hsa-mir-555 microRNA 555 ncRNA 272.5-26 chr3 59497347 59497624 + 1.5 NA Intergenic Intergenic 161012 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 319-31 chr5 29558852 29559189 + 1.5 NA Intergenic L1PA16|LINE|L1 -163044 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 308.5-20 chr20 31891733 31891959 + 1.5 NA intron (NR_148013, intron 3 of 16) AluSx|SINE|Alu 12029 NR_160277 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 127.5-12 chr7 42535407 42535538 + 1.5 NA Intergenic L1MC2|LINE|L1 170975 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 393.5-20 chr7 37248446 37248946 + 1.5 NA intron (NM_001206480, intron 6 of 21) intron (NM_001206480, intron 6 of 21) 104972 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 422-13 chr16 53657904 53658327 + 1.5 NA intron (NM_001127897, intron 12 of 24) intron (NM_001127897, intron 12 of 24) 45744 NM_015272 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 266-4 chr10 70271526 70271748 + 1.5 NA intron (NM_022146, intron 1 of 3) MIRb|SINE|MIR 12367 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 184.5-15 chr2 89836431 89836594 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198605 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 417.5-24 chr8 117104203 117104526 + 1.5 NA intron (NM_001172815, intron 2 of 10) MLT1C-int|LTR|ERVL-MaLR -30631 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 544.5-6 chr2 167606098 167606680 + 1.5 NA Intergenic Intergenic -212283 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 346.5-4 chr10 108229433 108229843 + 1.5 NA Intergenic L2b|LINE|L2 -160345 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 204.5-19 chr2 49746137 49746349 + 1.5 NA Intergenic L1PB3|LINE|L1 227960 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 403-17 chr15 71950194 71950513 + 1.5 NA intron (NM_006901, intron 15 of 41) intron (NM_006901, intron 15 of 41) 139799 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 211.5-29 chr6 20583235 20583473 + 1.5 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 48897 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 241.5-30 chr5 98069631 98069886 + 1.5 NA Intergenic Intergenic 91481 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 518.5-6 chr12 74868410 74869019 + 1.5 NA Intergenic L1P4|LINE|L1 330879 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 262-15 chr15 74897166 74897340 + 1.5 NA intron (NM_001289157, intron 6 of 6) intron (NM_001289157, intron 6 of 6) 7211 NM_001330372 4351 Hs.75694 NM_002435 ENSG00000178802 MPI CDG1B|PMI|PMI1 mannose phosphate isomerase protein-coding 307.5-17 chr17 75602897 75603185 + 1.5 NA exon (NM_001309242, exon 17 of 63) exon (NM_001309242, exon 17 of 63) 14983 NM_001309242 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB protein-coding 254-2 chr1 112028964 112029291 + 1.5 NA Intergenic Intergenic 38591 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 335-33 chr2 230766873 230767172 + 1.5 NA intron (NM_001130850, intron 2 of 8) intron (NM_001130850, intron 2 of 8) 53474 NM_001130850 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 292-4 chr1 233753524 233753808 + 1.5 NA Intergenic Intergenic 129514 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 247.5-23 chr6 129877214 129877411 + 1.5 NA Intergenic Intergenic -15997 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 442.5-19 chr5 92816105 92816463 + 1.5 NA Intergenic L1ME1|LINE|L1 755059 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 179-6 chr13 112638105 112638335 + 1.5 NA Intergenic Intergenic -8824 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 209.5-22 chr20 15612086 15612353 + 1.5 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 311095 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 235-14 chr16 12499258 12499473 + 1.5 NA intron (NM_032167, intron 19 of 20) intron (NM_032167, intron 19 of 20) -220956 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 207.5-29 chr5 23700158 23700305 + 1.5 NA Intergenic Intergenic 192576 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 177-9 chr2 46089234 46089393 + 1.5 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -208094 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 252.5-8 chr12 69002678 69002994 + 1.5 NA Intergenic Intergenic -39596 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 426.5-3 chr1 231272114 231272491 + 1.5 NA intron (NM_001316350, intron 9 of 14) intron (NM_001316350, intron 9 of 14) 31090 NM_001316350 8443 Hs.498028 NM_014236 ENSG00000116906 GNPAT DAP-AT|DAPAT|DHAPAT|RCDP2 glyceronephosphate O-acyltransferase protein-coding 387.5-22 chr6 51790500 51790998 + 1.5 NA intron (NM_138694, intron 53 of 66) LTR16E2|LTR|ERVL 168879 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 218-11 chr15 25790178 25790431 + 1.5 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 58521 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 290.5-19 chr4 79914120 79914546 + 1.5 NA intron (NM_001286781, intron 16 of 16) L4_C_Mam|LINE|RTE-X 86862 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 228.5-30 chr5 177574837 177575159 + 1.5 NA Intergenic Intergenic -17205 NM_017510 54732 Hs.279929 NM_017510 ENSG00000184840 TMED9 GMP25|HSGP25L2G|p24a2|p24alpha2|p25 transmembrane p24 trafficking protein 9 protein-coding 249.5-35 chr7 91543139 91543482 + 1.5 NA Intergenic L1MA2|LINE|L1 278877 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 193.5-29 chr8 52408208 52408439 + 1.5 NA intron (NM_001352880, intron 2 of 2) intron (NM_001352880, intron 2 of 2) 1433 NM_001352883 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 283-17 chr19 6171510 6171891 + 1.5 NA intron (NM_030924, intron 7 of 14) L1PA15-16|LINE|L1 36033 NM_030924 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 410-15 chr2 166193270 166193644 + 1.5 NA intron (NR_110260, intron 3 of 11) intron (NR_110260, intron 3 of 11) -44296 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 318.5-18 chr20 16876800 16877087 + 1.5 NA Intergenic Intergenic 128590 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 237.5-4 chr10 70409022 70409212 + 1.5 NA intron (NM_004096, intron 1 of 2) intron (NM_004096, intron 1 of 2) 4972 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 388-23 chr20 47015358 47015900 + 1.5 NA intron (NM_172110, intron 4 of 13) intron (NM_172110, intron 4 of 13) 120786 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 422.5-20 chr7 40681048 40681361 + 1.5 NA intron (NM_001193312, intron 11 of 12) MER21B|LTR|ERVL 298735 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 292-25 chr3 44200381 44200838 + 1.5 NA Intergenic Intergenic -41277 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 432-19 chr3 73682791 73683149 + 1.5 NA Intergenic L2a|LINE|L2 -58029 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 263.5-27 chr8 55516837 55517083 + 1.5 NA TTS (NR_134323) TTS (NR_134323) 4018 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 496 chr1 88633529 88634091 + 1.5 NA intron (NR_110682, intron 1 of 3) L1M2|LINE|L1 -50334 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 394.5-22 chr5 159422944 159423333 + 1.5 NA Intergenic Intergenic 43138 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 239.5-6 chr14 42694641 42694867 + 1.5 NA Intergenic Intergenic 1087898 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 233.5-36 chr8 119519178 119519342 + 1.5 NA Intergenic Intergenic 73748 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 281.5 chr1 25596681 25596884 + 1.5 NA Intergenic AluSx|SINE|Alu -20686 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 357.5-6 chr14 56393298 56393775 + 1.5 NA Intergenic L1MC1|LINE|L1 -120795 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 296-26 chr5 40049986 40050395 + 1.5 NA Intergenic Intergenic -2101 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 264.5-27 chr4 150404035 150404411 + 1.5 NA intron (NM_001367550, intron 47 of 56) intron (NM_001367550, intron 47 of 56) -174866 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 327.5-22 chr5 110499658 110500055 + 1.5 NA intron (NM_001039763, intron 12 of 13) L1M5|LINE|L1 14059 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 151.5-9 chr17 21973046 21973172 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -229886 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 427.5-12 chr15 73101351 73101931 + 1.5 NA intron (NM_002499, intron 1 of 28) L1MEc|LINE|L1 49157 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 281-23 chr20 1546622 1546868 + 1.5 NA intron (NM_178460, intron 2 of 3) L1MB7|LINE|L1 10960 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 498.5-13 chr4 143418106 143418556 + 1.5 NA intron (NM_207123, intron 2 of 10) intron (NM_207123, intron 2 of 10) 74871 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 194.5-3 chr1 113238659 113238850 + 1.5 NA Intergenic MLT1M|LTR|ERVL-MaLR -32501 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 204.5-18 chr18 848013 848242 + 1.5 NA Intergenic Intergenic -35885 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 215-11 chr12 21527707 21527886 + 1.5 NA promoter-TSS (NR_135188) promoter-TSS (NR_135188) -129 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 199-19 chr7 69988908 69989088 + 1.5 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 390523 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 201.5-7 chr12 5086438 5086699 + 1.5 NA Intergenic Intergenic 42689 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 234.5-22 chr4 33605817 33606069 + 1.5 NA Intergenic L1PA13|LINE|L1 433950 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 277-30 chr20 56705749 56706073 + 1.5 NA Intergenic MIRc|SINE|MIR 76605 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 250.5-22 chr2 215881086 215881420 + 1.5 NA Intergenic LTR85c|LTR|Gypsy? -37717 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 130-7 chr4 30472129 30472316 + 1.5 NA Intergenic L1MC5|LINE|L1 -248147 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 300.5-22 chr2 115414047 115414565 + 1.5 NA intron (NM_001321912, intron 4 of 25) MIR3|SINE|MIR 70491 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 253.5-8 chr14 45585961 45586266 + 1.5 NA Intergenic L1M2|LINE|L1 129489 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 293.5-7 chr12 39641865 39642235 + 1.5 NA intron (NR_135051, intron 2 of 18) L2c|LINE|L2 15867 NR_135051 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 203.5-36 chr9 80011853 80012088 + 1.5 NA intron (NR_121212, intron 3 of 4) L1M4|LINE|L1 36947 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 226.5-10 chr16 68025488 68025793 + 1.5 NA intron (NM_017803, intron 2 of 16) intron (NM_017803, intron 2 of 16) -1773 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 224.5-29 chr7 124317288 124317438 + 1.5 NA Intergenic Intergenic 34733 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 132.5-12 chr2 235016037 235016216 + 1.5 NA intron (NM_001371304, intron 2 of 5) MER20|DNA|hAT-Charlie -11609 NM_001371306 231.5-8 chr16 66768161 66768386 + 1.5 NA intron (NM_001136505, intron 14 of 18) intron (NM_001136505, intron 14 of 18) -16445 NR_136658 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 296-21 chr2 135702853 135703258 + 1.5 NA intron (NM_001282798, intron 20 of 25) L4_C_Mam|LINE|RTE-X 37658 NR_029672 406915 NR_029672 ENSG00000207654 MIR128-1 MIR128A|MIRN128-1|MIRN128A|mir-128-1 microRNA 128-1 ncRNA 389.5-23 chr4 61203212 61203543 + 1.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 1205 NM_001371342 387.5-10 chr2 7936417 7936814 + 1.5 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) -36960 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 222-24 chr5 125099989 125100264 + 1.5 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 63295 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 291-26 chr7 110503481 110503872 + 1.5 NA Intergenic L1M4|LINE|L1 -543463 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 450-25 chrX 65754796 65755184 + 1.5 NA Intergenic L1M4|LINE|L1 87336 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 220.5-2 chr1 60195893 60196125 + 1.5 NA Intergenic MIRb|SINE|MIR -122239 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 257.5-46 chrX 88888414 88888698 + 1.5 NA Intergenic L1PA16|LINE|L1 141331 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 326.5-38 chr8 117739191 117739527 + 1.5 NA Intergenic Intergenic 181554 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 139-10 chr8 94090972 94091064 + 1.5 NA Intergenic Intergenic 117537 NM_004063 1015 Hs.591853 NM_004063 ENSG00000079112 CDH17 CDH16|HPT-1|HPT1 cadherin 17 protein-coding 115-4 chr22 24850142 24850237 + 1.5 NA intron (NM_001098498, intron 4 of 23) L1M5|LINE|L1 43968 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 193-4 chr11 84076699 84076938 + 1.5 NA intron (NM_001142699, intron 10 of 27) L2b|LINE|L2 196462 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 262.5-20 chr5 45197503 45197800 + 1.5 NA Intergenic Intergenic 388704 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 453-5 chr11 44106130 44106715 + 1.5 NA intron (NM_000401, intron 1 of 13) intron (NM_000401, intron 1 of 13) 10225 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 416-16 chr2 223259644 223260065 + 1.5 NA Intergenic Intergenic 207924 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 236.5-23 chr20 49143078 49143382 + 1.5 NA intron (NM_004602, intron 5 of 13) intron (NM_004602, intron 5 of 13) 45140 NM_017453 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 314-20 chr2 241166288 241166538 + 1.5 NA exon (NM_001282414, exon 7 of 8) exon (NM_001282414, exon 7 of 8) 15946 NM_002712 5510 Hs.36587 NM_002712 ENSG00000115685 PPP1R7 SDS22 protein phosphatase 1 regulatory subunit 7 protein-coding 278-19 chr22 40293031 40293420 + 1.5 NA intron (NM_015088, intron 10 of 20) AluSx1|SINE|Alu -53275 NR_134256 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 368-31 chr4 94252739 94253308 + 1.5 NA promoter-TSS (NM_001254949) promoter-TSS (NM_001254949) -286 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 145.5-20 chr22 23215548 23215747 + 1.5 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 35138 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 218.5-22 chr3 67658130 67658327 + 1.5 NA intron (NR_109992, intron 1 of 6) MER89|LTR|ERV1 3531 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 276-17 chr16 59950356 59950644 + 1.5 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 95147 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 155.5-16 chr6 56839992 56840165 + 1.5 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 3587 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 351.5-17 chr3 46147620 46147953 + 1.5 NA Intergenic L1MA9|LINE|L1 60527 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 268.5-38 chr9 93393539 93393833 + 1.5 NA Intergenic HERVL18-int|LTR|ERVL -47272 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 258.5-23 chr5 167647447 167647857 + 1.5 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 73993 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 327-16 chr15 58479108 58479443 + 1.5 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 19460 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 485.5-11 chr3 120206981 120207622 + 1.5 NA intron (NM_001168271, intron 2 of 8) L1MA9|LINE|L1 36994 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 256-33 chr9 73231676 73231896 + 1.5 NA Intergenic Intergenic 79921 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 134.5 chr1 117776217 117776373 + 1.5 NA Intergenic L1ME1|LINE|L1 153326 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 362-12 chr16 57689345 57689714 + 1.5 NA TTS (NM_170776) TTS (NM_170776) -5277 NM_001289163 84229 Hs.513635 NM_032269 ENSG00000159625 DRC7 C16orf50|CCDC135|CFAP50|FAP50 dynein regulatory complex subunit 7 protein-coding 258-17 chr22 22237637 22237936 + 1.5 NA Intergenic AluJo|SINE|Alu -7000 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 131.5-26 chr7 124069665 124069773 + 1.5 NA Intergenic Intergenic -36652 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 500.5-9 chr20 39565809 39566402 + 1.5 NA Intergenic Intergenic -341357 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 400-6 chr10 100055871 100056404 + 1.5 NA intron (NM_001308, intron 6 of 8) L1MB3|LINE|L1 25732 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 277-11 chr13 41400808 41401130 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -41595 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 335-9 chr12 17686551 17686819 + 1.5 NA Intergenic L1MD3|LINE|L1 13386 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 303.5-9 chr2 20824605 20825003 + 1.5 NA Intergenic LTR39|LTR|ERV1 -1674 NM_001282721 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 281-41 chr8 52308098 52308353 + 1.5 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -53733 NM_001352849 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 135.5-13 chr7 122545143 122545272 + 1.5 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 153910 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 134-5 chr22 35040448 35040554 + 1.5 NA Intergenic Intergenic -25657 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 560.5-8 chr2 144026081 144026692 + 1.5 NA intron (NM_001354355, intron 7 of 13) AluSx|SINE|Alu 89319 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 332.5-14 chr5 106353239 106353518 + 1.5 NA Intergenic L1MC1|LINE|L1 657636 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 324.5-34 chr6 50309522 50310086 + 1.5 NA Intergenic L3|LINE|CR1 -259875 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 369-30 chr4 157792926 157793428 + 1.5 NA Intergenic Intergenic 220687 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 145.5-14 chr15 76580357 76580456 + 1.5 NA intron (NR_148227, intron 22 of 32) L1MA3|LINE|L1 -6241 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 765.5-5 chr8 123180173 123181005 + 1.5 NA intron (NM_032899, intron 1 of 4) intron (NM_032899, intron 1 of 4) 457 NM_032899 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 164-3 chr1 163252553 163252742 + 1.5 NA intron (NM_001254748, intron 2 of 5) UCON132b|DNA|hAT-Tip100 -49731 NM_001195303 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 421.5-22 chr5 89046038 89046469 + 1.5 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -142148 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 211-23 chr5 162060121 162060304 + 1.5 NA Intergenic L1ME2|LINE|L1 -7430 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 159-4 chr7 136033005 136033142 + 1.5 NA Intergenic LTR79|LTR|ERVL -55714 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 189-6 chr14 72034980 72035188 + 1.5 NA intron (NM_001370288, intron 2 of 16) Tigger7|DNA|TcMar-Tigger 101557 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 190-7 chr2 15944072 15944296 + 1.5 NA intron (NM_005378, intron 2 of 2) intron (NM_005378, intron 2 of 2) -1751 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 113.5-5 chr2 59759588 59759708 + 1.5 NA Intergenic L2c|LINE|L2 541940 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 358-3 chr10 23686840 23687127 + 1.5 NA Intergenic Intergenic -7744 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 286-6 chr13 34131637 34131880 + 1.5 NA Intergenic L1MB8|LINE|L1 -216285 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 302.5-2 chr1 168191390 168191748 + 1.5 NA intron (NM_152902, intron 4 of 6) intron (NM_152902, intron 4 of 6) 12607 NM_152902 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 251.5-23 chr5 103524974 103525226 + 1.5 NA Intergenic Intergenic 16885 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 347.5-18 chr2 190611510 190611995 + 1.5 NA Intergenic PABL_A-int|LTR|ERV1 -37143 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 293.5-35 chr8 128146852 128147213 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -3084 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 550-7 chr14 53510297 53511129 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 357359 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 442.5-2 chr10 11222713 11223278 + 1.5 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 57965 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 507.5-15 chr8 127305327 127305808 + 1.5 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 60930 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 397.5-23 chr4 10175090 10175435 + 1.5 NA Intergenic Intergenic -58463 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 247-21 chr5 125078413 125078687 + 1.5 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 41719 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 254.5-42 chr6 157890636 157890883 + 1.5 NA intron (NM_016224, intron 4 of 17) intron (NM_016224, intron 4 of 17) 67513 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 755.5-5 chr5 141373507 141374406 + 1.5 NA promoter-TSS (NM_032086) promoter-TSS (NM_032086) 65 NM_018919 56109 Hs.368160 NM_018919 ENSG00000253731 PCDHGA6 PCDH-GAMMA-A6 protocadherin gamma subfamily A, 6 protein-coding 200-17 chr5 159014465 159014613 + 1.5 NA intron (NM_182708, intron 5 of 14) MIRc|SINE|MIR 83417 NM_001364156 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 204-12 chr17 69503568 69503799 + 1.5 NA intron (NM_001330450, intron 1 of 11) intron (NM_001330450, intron 1 of 11) 1421 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 182.5-14 chr20 31717899 31718087 + 1.5 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -3514 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 583-7 chr18 34241746 34242178 + 1.5 NA Intergenic LTR9|LTR|ERV1 -18411 NM_001353232 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 262-18 chr17 81829297 81829566 + 1.5 NA intron (NM_001288798, intron 1 of 6) intron (NM_001288798, intron 1 of 6) 3860 NM_001288799 348262 Hs.514632 NM_207368 ENSG00000225663 MCRIP1 FAM195B|GRAN2|MCRIP MAPK regulated corepressor interacting protein 1 protein-coding 409-12 chr2 57687334 57687702 + 1.5 NA Intergenic L1PA17|LINE|L1 -220133 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 358.5-21 chr4 188176565 188176835 + 1.5 NA Intergenic AluSx|SINE|Alu 37259 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 257-24 chr2 133634325 133634561 + 1.5 NA Intergenic Intergenic -65980 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 305-5 chr1 212574353 212574738 + 1.5 NA intron (NM_001030287, intron 1 of 3) L1M5|LINE|L1 9211 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 348.5-14 chr21 31178134 31178628 + 1.5 NA intron (NM_001353686, intron 15 of 27) AluYe5|SINE|Alu -17441 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 239.5-22 chr8 88260481 88260798 + 1.5 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 66844 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 381.5-13 chr2 192617212 192617630 + 1.5 NA Intergenic L1MEg|LINE|L1 -132424 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 217-23 chr6 157254765 157254936 + 1.5 NA Intergenic MER81|DNA|hAT-Blackjack 69409 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 470.5-12 chr5 151810845 151811174 + 1.5 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -38833 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 276.5-29 chr4 79171461 79171699 + 1.5 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 154481 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 438.5-8 chr2 136331816 136332310 + 1.5 NA Intergenic Intergenic -213908 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 208.5-29 chr7 27651651 27651945 + 1.5 NA intron (NM_152740, intron 1 of 7) L2c|LINE|L2 11085 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 207-9 chr16 36008241 36008483 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 261810 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 291 chr1 105300032 105300275 + 1.5 NA Intergenic L1M1|LINE|L1 318782 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 464 chr1 186180472 186180941 + 1.5 NA intron (NM_031935, intron 104 of 106) intron (NM_031935, intron 104 of 106) -115567 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 223-24 chr20 13176198 13176432 + 1.5 NA Intergenic L1MA5A|LINE|L1 -44959 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 229-33 chr9 33436473 33436644 + 1.5 NA Intergenic LTR33|LTR|ERVL 11035 NM_004925 360 Hs.234642 NM_004925 ENSG00000165272 AQP3 AQP-3|GIL aquaporin 3 (Gill blood group) protein-coding 223.5-14 chr15 95717277 95717553 + 1.5 NA Intergenic Intergenic 284322 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 203-19 chr4 53499113 53499360 + 1.5 NA promoter-TSS (NR_046622) promoter-TSS (NR_046622) -841 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 381.5 chr1 195893404 195893949 + 1.5 NA Intergenic MER76-int|LTR|ERVL 195039 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 224.5-3 chr10 43330534 43330803 + 1.5 NA Intergenic AluJo|SINE|Alu -40968 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 420-4 chr10 33405554 33405903 + 1.5 NA Intergenic Intergenic -70823 NR_045259 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 258.5-4 chr12 42977325 42977517 + 1.5 NA Intergenic Intergenic -177894 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 447-23 chr5 39145154 39145848 + 1.5 NA intron (NM_001243093, intron 3 of 18) MamRep1151|LTR?|LTR? -71102 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 193-11 chr2 182939707 182939893 + 1.5 NA intron (NM_013436, intron 24 of 30) intron (NM_013436, intron 24 of 30) -73163 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 414-11 chr15 57580535 57580933 + 1.5 NA Intergenic Intergenic -11170 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 215-19 chr20 31452246 31452473 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR 11727 NM_153324 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 347-28 chr8 131926774 131927247 + 1.5 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 10237 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 377-5 chr10 109073577 109074095 + 1.5 NA Intergenic Intergenic 849410 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 299-18 chr2 63676694 63676969 + 1.5 NA Intergenic L1MD2|LINE|L1 87680 NM_001199111 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 134 chr1 48123159 48123316 + 1.5 NA intron (NR_026749, intron 9 of 9) intron (NR_026749, intron 9 of 9) 59191 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 321-29 chr8 56399674 56399937 + 1.5 NA Intergenic L1MC1|LINE|L1 -9095 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 277.5-25 chr4 59203948 59204296 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 190549 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 123.5-8 chr19 57529190 57529308 + 1.5 NA intron (NM_153263, intron 1 of 2) MER44D|DNA|TcMar-Tigger 1893 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 195-15 chr4 19689643 19689890 + 1.5 NA Intergenic Intergenic -562139 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 310.5-21 chr2 25249378 25249644 + 1.5 NA intron (NR_135490, intron 6 of 23) intron (NR_135490, intron 6 of 23) 2620 NM_001320893 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 404-3 chr1 143264235 143264776 + 1.5 NA Intergenic Intergenic 158087 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 269-10 chr12 7293612 7294057 + 1.5 NA Intergenic MER4B-int|LTR|ERV1 -10498 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 259.5-44 chr8 113236098 113236398 + 1.5 NA intron (NM_001363185, intron 3 of 66) LTR43B|LTR|ERV1 140904 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 359-28 chr20 14550826 14551205 + 1.5 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) -3369 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 255-19 chr22 37192842 37193176 + 1.5 NA intron (NM_001365878, intron 2 of 4) MER41-int|LTR|ERV1 -4762 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and TNF related 6 protein-coding 349.5-15 chr17 34946627 34947212 + 1.5 NA intron (NM_006584, intron 5 of 13) L1ME3A|LINE|L1 14541 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 302-9 chr12 33861428 33861860 + 1.5 NA Intergenic L1M1|LINE|L1 -160852 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 303.5-23 chr7 37719230 37719565 + 1.5 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 35631 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 275-17 chr17 61196671 61197024 + 1.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 170857 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 201.5-14 chr17 59519272 59519549 + 1.5 NA intron (NR_110813, intron 1 of 2) intron (NR_110813, intron 1 of 2) 7447 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 338.5-12 chr16 47028205 47028537 + 1.5 NA Intergenic AluSx1|SINE|Alu -54697 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 262.5-25 chr8 52414143 52414431 + 1.5 NA Intergenic Intergenic -4408 NM_014682 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 463.5-4 chr12 32058677 32059411 + 1.5 NA Intergenic MER4E|LTR|ERV1 -47763 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 179-18 chr5 123501081 123501243 + 1.5 NA Intergenic Intergenic -10937 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 297.5-17 chr2 46842387 46842636 + 1.5 NA intron (NR_024452, intron 1 of 2) MLT1H|LTR|ERVL-MaLR 14647 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 275.5-31 chr7 7520929 7521138 + 1.5 NA intron (NM_001037763, intron 5 of 34) intron (NM_001037763, intron 5 of 34) 14840 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 255.5-2 chr1 175570652 175570945 + 1.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 172797 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 164-13 chr8 120392437 120392576 + 1.5 NA Intergenic L1M2|LINE|L1 52644 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 263-20 chr4 101942390 101942711 + 1.5 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 128708 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 147-6 chr6 146517283 146517416 + 1.5 NA Intergenic L2a|LINE|L2 -26484 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 243-4 chr10 16478610 16478967 + 1.5 NA intron (NM_030664, intron 2 of 5) intron (NM_030664, intron 2 of 5) 41845 NM_001261838 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 155.5-17 chrX 53753754 53753888 + 1.5 NA Intergenic L1MB4|LINE|L1 -67102 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 154-4 chr3 184422786 184422894 + 1.5 NA intron (NR_161198, intron 1 of 2) intron (NR_161198, intron 1 of 2) 21303 NR_161199 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 181-13 chr5 130780837 130781083 + 1.5 NA Intergenic L1M7|LINE|L1 384296 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 403.5-12 chr2 184903997 184904361 + 1.5 NA intron (NM_194250, intron 2 of 3) L1M3|LINE|L1 262893 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 170-22 chr9 116462267 116462466 + 1.5 NA intron (NM_014010, intron 19 of 21) MIR|SINE|MIR -41917 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 198-8 chr18 67575731 67575982 + 1.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -59136 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 305-8 chr11 84182323 84182569 + 1.5 NA intron (NM_001142700, intron 1 of 19) AluJb|SINE|Alu 90834 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 264.5-9 chr10 102694206 102694408 + 1.5 NA intron (NM_004311, intron 3 of 5) L1MC2|LINE|L1 20090 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3|JBTS35|RP83 ADP ribosylation factor like GTPase 3 protein-coding 289.5-3 chr1 69277190 69277481 + 1.5 NA Intergenic Intergenic -155920 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 288.5-21 chr18 5900535 5900934 + 1.5 NA Intergenic L2a|LINE|L2 -4780 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 372-24 chr2 162286556 162286966 + 1.5 NA intron (NM_022168, intron 5 of 15) intron (NM_022168, intron 5 of 15) 31923 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 234-25 chr8 78382520 78382771 + 1.5 NA Intergenic L1MC5|LINE|L1 -133695 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 190-12 chr4 103090128 103090262 + 1.5 NA intron (NM_020139, intron 5 of 9) intron (NM_020139, intron 5 of 9) 9639 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 701-5 chr22 35285875 35286943 + 1.5 NA intron (NM_001003681, intron 7 of 10) intron (NM_001003681, intron 7 of 10) -12866 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 178.5-9 chr2 179970246 179970438 + 1.5 NA intron (NM_020943, intron 11 of 19) intron (NM_020943, intron 11 of 19) 36955 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 285-3 chr1 188503384 188503630 + 1.5 NA Intergenic Intergenic 1059879 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 127.5-2 chr13 80164936 80165107 + 1.5 NA Intergenic Intergenic 153944 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 346-35 chr9 78093180 78093437 + 1.5 NA Intergenic Intergenic -61497 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 167-14 chr7 29590451 29590639 + 1.5 NA Intergenic L1ME1|LINE|L1 25012 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 375-25 chr6 3766104 3766547 + 1.5 NA Intergenic Intergenic -14313 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 305.5-15 chr2 38898755 38899012 + 1.5 NA Intergenic Intergenic -20480 NM_001145451 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 186.5-31 chrX 98272861 98273060 + 1.5 NA Intergenic L1ME3E|LINE|L1 -708425 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 374-35 chr7 3859966 3860446 + 1.5 NA intron (NM_152744, intron 5 of 44) L1ME3G|LINE|L1 -269479 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 214.5-23 chr5 11644700 11644886 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -55727 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 216.5-17 chr16 59855913 59856081 + 1.5 NA intron (NR_110917, intron 1 of 3) LTR49|LTR|ERV1 644 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 224.5-10 chr17 61881734 61882030 + 1.5 NA intron (NM_001351695, intron 16 of 24) intron (NM_001351695, intron 16 of 24) -18323 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 479.5-5 chr2 178449238 178449950 + 1.5 NA intron (NM_001139517, intron 1 of 6) intron (NM_001139517, intron 1 of 6) 1034 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 369-27 chr22 46827938 46828241 + 1.5 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 54162 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 227.5-28 chr7 94992079 94992262 + 1.5 NA intron (NM_017650, intron 2 of 15) L1ME1|LINE|L1 82272 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 520-12 chr16 49960796 49961255 + 1.5 NA Intergenic Intergenic -64181 NR_104042 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 199.5-8 chr13 37792808 37793015 + 1.5 NA intron (NM_003306, intron 1 of 10) L2b|LINE|L2 77514 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 153.5-5 chr2 40696760 40696889 + 1.5 NA Intergenic Intergenic -184389 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 182-4 chr12 16323526 16323730 + 1.5 NA Intergenic Intergenic -23514 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 360.5-17 chr3 126599802 126600156 + 1.5 NA Intergenic LTR52-int|LTR|ERVL -41047 NM_152533 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 385.5-12 chr14 53812050 53812454 + 1.5 NA Intergenic L1MD1|LINE|L1 136232 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 303.5-14 chr3 14832150 14832454 + 1.5 NA intron (NM_152536, intron 1 of 19) MIR|SINE|MIR 13340 NM_152536 152273 Hs.412406 NM_152536 ENSG00000154783 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 255.5-14 chr2 25565374 25565679 + 1.5 NA intron (NM_001320937, intron 8 of 8) AluJb|SINE|Alu 84696 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 189-9 chr15 93176977 93177166 + 1.5 NA Intergenic Intergenic -28995 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 333-9 chr15 64368630 64369061 + 1.5 NA intron (NM_001029989, intron 2 of 2) intron (NM_001029989, intron 2 of 2) 12596 NM_014736 9768 Hs.81892 NM_014736 ENSG00000166803 PCLAF KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF PCNA clamp associated factor protein-coding 124-3 chr2 190910376 190910464 + 1.5 NA intron (NM_014905, intron 7 of 17) intron (NM_014905, intron 7 of 17) 29599 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 274.5 chr1 35336138 35336428 + 1.5 NA intron (NM_001350140, intron 3 of 27) L1MB2|LINE|L1 29794 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 512-18 chr8 136233814 136234233 + 1.5 NA Intergenic L1P3|LINE|L1 -296775 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 220-27 chr6 44856090 44856395 + 1.5 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -304361 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 620.5-6 chr4 30943866 30944518 + 1.5 NA intron (NM_001173523, intron 2 of 2) Charlie1b|DNA|hAT-Charlie 223823 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 315-14 chr19_KI270866v1_alt 41493 41924 + 1.5 NA Intergenic Intergenic 27776 NM_001289789 2821 Hs.466471 NM_000175 ENSG00000105220 GPI AMF|GNPI|NLK|PGI|PHI|SA-36|SA36 glucose-6-phosphate isomerase protein-coding 506-18 chr22 28393170 28393624 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -66472 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 300-25 chr6 43420671 43420947 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -6732 NM_001198934 89845 Hs.55879 NM_033450 ENSG00000124574 ABCC10 EST182763|MRP7|SIMRP7 ATP binding cassette subfamily C member 10 protein-coding 560-8 chr2 31910448 31910990 + 1.5 NA intron (NM_001137602, intron 4 of 7) AluJb|SINE|Alu 99945 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 633-12 chr8 103555701 103556388 + 1.5 NA intron (NM_001348497, intron 1 of 22) L1MA8|LINE|L1 -54134 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 173-11 chr21 16234391 16234581 + 1.5 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 40107 NR_027791 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 420.5-16 chr3 89745267 89745647 + 1.5 NA Intergenic L1MA9|LINE|L1 637836 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 436-29 chr5 167906891 167907482 + 1.5 NA intron (NM_001368145, intron 2 of 26) AluSp|SINE|Alu 152257 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 186-17 chr3 60827385 60827650 + 1.5 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -209647 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 293-11 chr16 78046122 78046454 + 1.5 NA Intergenic Intergenic 23740 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 471.5-2 chr10 9415220 9415664 + 1.5 NA Intergenic L2a|LINE|L2 -119849 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 362-26 chr5 27776220 27776733 + 1.5 NA Intergenic Intergenic 304184 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 234.5-27 chr6 71512102 71512426 + 1.5 NA Intergenic L2a|LINE|L2 91237 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 234.5-34 chrX 88717491 88717821 + 1.5 NA Intergenic L1MC5|LINE|L1 -29569 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 392.5-14 chr17 51718696 51719059 + 1.5 NA intron (NM_001082533, intron 5 of 9) MER21B|LTR|ERVL 283450 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 526-19 chr7 133563729 133564437 + 1.5 NA intron (NM_021807, intron 9 of 17) MSTA|LTR|ERVL-MaLR 260805 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 242.5-24 chr4 116318297 116318527 + 1.5 NA Intergenic Intergenic 18687 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 312.5-11 chr17 60170571 60170789 + 1.5 NA non-coding (NR_137422, exon 9 of 12) non-coding (NR_137422, exon 9 of 12) 20707 NM_000717 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 273.5-7 chr15 59712050 59712363 + 1.5 NA Intergenic Intergenic -22886 NM_001368061 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 475.5-7 chr15 87595161 87595666 + 1.5 NA Intergenic Intergenic 18484 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 374-39 chr8 105579440 105580023 + 1.5 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 260188 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 311-20 chr2 198254573 198254870 + 1.5 NA Intergenic L2|LINE|L2 120376 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 222-4 chr10 113280849 113281100 + 1.5 NA Intergenic L2b|LINE|L2 151703 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 473-27 chr8 133413606 133413951 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -116474 NM_006096 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 563-15 chr6 77026273 77026694 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -432860 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 244 chr1 213271041 213271254 + 1.5 NA intron (NM_001136138, intron 13 of 13) L1ME1|LINE|L1 219906 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 270.5-32 chr7 114527970 114528190 + 1.5 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 101578 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 192-26 chr9 84087954 84088154 + 1.5 NA intron (NR_110995, intron 7 of 8) Tigger1|DNA|TcMar-Tigger 24611 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 210.5-3 chr11 111175764 111175988 + 1.5 NA Intergenic MIRb|SINE|MIR -69849 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 180.5-17 chr5 81785713 81785901 + 1.5 NA Intergenic Intergenic -34554 NM_012446 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 386-24 chr3 158518574 158518899 + 1.5 NA intron (NM_001271838, intron 7 of 9) L2|LINE|L2 -7972 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 292-36 chr9 79790343 79790684 + 1.5 NA Intergenic AluSz|SINE|Alu -34017 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 249.5-3 chr10 35563941 35564188 + 1.5 NA intron (NM_181698, intron 10 of 11) AluSq2|SINE|Alu -41277 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 426.5-23 chr6 42089949 42090407 + 1.5 NA Intergenic AluSx3|SINE|Alu 39654 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 219.5-42 chr9 25875951 25876131 + 1.5 NA Intergenic Intergenic 95985 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 562.5-6 chr10 119923494 119924032 + 1.5 NA intron (NM_007190, intron 12 of 18) AluSx1|SINE|Alu 31033 NM_007190 11196 Hs.435004 NM_007190 ENSG00000107651 SEC23IP MSTP053|P125|P125A SEC23 interacting protein protein-coding 242-11 chr14 69628443 69628688 + 1.5 NA intron (NM_014734, intron 1 of 5) MIRb|SINE|MIR 16969 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 161.5-12 chr2 78908664 78908838 + 1.5 NA Intergenic Intergenic -116951 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 496.5-15 chr5 111499743 111500261 + 1.5 NA TTS (NR_131752) TTS (NR_131752) -12224 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 250-25 chr20 43461766 43462021 + 1.5 NA non-coding (NR_034009, exon 7 of 7) non-coding (NR_034009, exon 7 of 7) 3997 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 319.5-13 chr2 26754789 26755212 + 1.5 NA Intergenic Intergenic -9284 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 385.5-25 chr2 136133952 136134424 + 1.5 NA Intergenic Intergenic -16033 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 372-16 chr14 68802931 68803338 + 1.5 NA Intergenic L1ME1|LINE|L1 -6891 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 292-30 chr5 31201789 31202178 + 1.5 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 8297 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 574.5 chr1 103461328 103461946 + 1.5 NA intron (NM_001347930, intron 1 of 4) intron (NM_001347930, intron 1 of 4) 63874 NM_001347930 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 187.5-22 chr4 91345568 91345786 + 1.5 NA intron (NM_001145065, intron 10 of 10) L1MC2|LINE|L1 931625 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 178-17 chr6 90404957 90405128 + 1.5 NA Intergenic MER34|LTR|ERV1 92300 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 397.5-15 chr2 96628183 96628581 + 1.5 NA intron (NR_047654, intron 3 of 20) AluJb|SINE|Alu 9609 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 475.5-8 chr18 9890908 9891299 + 1.5 NA Intergenic AluJr|SINE|Alu 5130 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 273-21 chr22 30102388 30102622 + 1.5 NA intron (NM_001329457, intron 4 of 11) intron (NM_001329457, intron 4 of 11) 22041 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 254.5-9 chr12 58792545 58792759 + 1.5 NA intron (NR_126341, intron 1 of 1) L1MB7|LINE|L1 -10936 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 188.5-16 chr3 196089645 196089830 + 1.5 NA Intergenic Intergenic -7647 NM_003234 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 137-8 chr8 136557000 136557131 + 1.5 NA intron (NR_147196, intron 2 of 5) (TAA)n|Simple_repeat|Simple_repeat 26267 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 363.5-24 chr5 153205245 153205863 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -233205 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 194-11 chr2 139171046 139171198 + 1.5 NA Intergenic Intergenic 273798 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 378-27 chr6 167035719 167036098 + 1.5 NA intron (NM_001278690, intron 10 of 10) MIRb|SINE|MIR 36511 NM_194429 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 453-30 chr8 99800187 99800581 + 1.5 NA intron (NM_017890, intron 43 of 61) intron (NM_017890, intron 43 of 61) 93323 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 173-9 chr2 101541183 101541387 + 1.5 NA Intergenic L1ME1|LINE|L1 -66173 NM_001367509 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 447.5-16 chr4 15466977 15467376 + 1.5 NA Intergenic Intergenic -2689 NM_001080522 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 338-42 chrY 3116670 3116942 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 113810 NR_046502 100873962 Hs.267256 NR_046502 ENSG00000231535 LINC00278 NCRNA00278 long intergenic non-protein coding RNA 278 ncRNA 285.5-16 chr4 64951010 64951230 + 1.5 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 53380 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 438-24 chr3 174230785 174231236 + 1.5 NA intron (NM_001365928, intron 4 of 6) LTR8|LTR|ERV1 -310214 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 223-22 chr2 191382634 191382858 + 1.5 NA intron (NM_012223, intron 14 of 28) intron (NM_012223, intron 14 of 28) 137342 NM_012223 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 315.5-21 chr2 101690639 101690906 + 1.5 NA Intergenic Intergenic -6931 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 259.5-42 chr6 145513969 145514164 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 172811 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 179 chr1 239170606 239170836 + 1.5 NA Intergenic L1PA14|LINE|L1 -215847 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 257.5-25 chr22 25293571 25293743 + 1.5 NA Intergenic L1MC5|LINE|L1 -24600 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 219-16 chr16 3263102 3263335 + 1.5 NA promoter-TSS (NR_033904) promoter-TSS (NR_033904) -550 NR_033904 283876 Hs.592092 NR_033904 ENSG00000281005 LINC00921 - long intergenic non-protein coding RNA 921 ncRNA 276.5-25 chr20 36541566 36541929 + 1.5 NA intron (NM_006097, intron 1 of 3) intron (NM_006097, intron 1 of 3) 228 NM_181526 10398 Hs.504687 NM_006097 ENSG00000101335 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin light chain 9 protein-coding 310-44 chr8 124856277 124856522 + 1.5 NA Intergenic L1PA14|LINE|L1 -34341 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 250.5-30 chr5 24669378 24669640 + 1.5 NA Intergenic AluSx4|SINE|Alu -24531 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 240.5-24 chr6 120323326 120323587 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR 308277 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 220.5-22 chr4 49091962 49092183 + 1.5 NA Intergenic (CATTC)n|Satellite|Satellite 105430 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 563-17 chr8 87829892 87830420 + 1.5 NA Intergenic Intergenic 43859 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 315.5-27 chr4 70383453 70383810 + 1.5 NA intron (NM_006685, intron 1 of 2) intron (NM_006685, intron 1 of 2) 500 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 175.5-21 chr3 37742340 37742506 + 1.5 NA intron (NM_002207, intron 21 of 27) intron (NM_002207, intron 21 of 27) 119357 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 448.5-21 chr8 134506866 134507244 + 1.5 NA intron (NM_001174158, intron 13 of 13) L2c|LINE|L2 -91016 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 280-11 chr12 55089673 55090062 + 1.5 NA Intergenic Intergenic -39902 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 405-34 chr7 45896637 45897124 + 1.5 NA Intergenic L1PB1|LINE|L1 8392 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 139.5-2 chr1 191983849 191984024 + 1.5 NA Intergenic L1MA4A|LINE|L1 -174526 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 128.5-30 chr8 124579540 124579644 + 1.5 NA intron (NM_001363294, intron 6 of 13) intron (NM_001363294, intron 6 of 13) 40469 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 128-8 chr9 113843864 113843949 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -32376 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 213-4 chr10 58957513 58957677 + 1.5 NA Intergenic Intergenic -41923 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 511-14 chr20 42445548 42445978 + 1.5 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -239720 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 371.5-27 chr8 127060546 127060819 + 1.5 NA Intergenic Intergenic -19192 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 587.5-15 chr22 38556201 38556863 + 1.5 NA intron (NM_001363017, intron 5 of 11) intron (NM_001363017, intron 5 of 11) 11877 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 468 chr1 45649224 45649641 + 1.5 NA intron (NM_021639, intron 6 of 12) L1MC4|LINE|L1 -2747 NR_026768 728963 Hs.675157 NR_026768 RPS15AP10 RPS15A_4_42 ribosomal protein S15a pseudogene 10 pseudo 310.5-40 chr6 66533603 66534013 + 1.5 NA Intergenic Intergenic 745929 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 390-20 chr3 17548337 17548739 + 1.5 NA intron (NM_001349075, intron 1 of 22) intron (NM_001349075, intron 1 of 22) 151482 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 207-22 chr6 8848021 8848238 + 1.5 NA Intergenic Intergenic 195920 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 411.5-26 chr7 88636547 88636989 + 1.5 NA Intergenic Intergenic -122932 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 403.5-7 chr15 59661371 59661820 + 1.5 NA 3' UTR (NM_001368061, exon 8 of 8) 3' UTR (NM_001368061, exon 8 of 8) -4080 NM_004492 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 515-8 chr14 73782464 73782923 + 1.5 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 4515 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 243-5 chr10 90377760 90377953 + 1.5 NA Intergenic MIRb|SINE|MIR 162949 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 460-4 chr10 92324379 92324782 + 1.5 NA intron (NM_017824, intron 2 of 5) AluY|SINE|Alu 33413 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 143.5-17 chr4 100573316 100573466 + 1.5 NA Intergenic MER97c|DNA|hAT-Tip100 -55369 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 316.5-32 chrX 100143614 100144050 + 1.5 NA Intergenic L1MEf|LINE|L1 266441 NM_001184880 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 208-10 chr17 39572535 39572765 + 1.5 NA Intergenic Intergenic 35270 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 256.5 chr1 70484951 70485226 + 1.5 NA Intergenic Intergenic 73820 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 465-2 chr1 24402856 24403366 + 1.5 NA intron (NM_001199012, intron 1 of 8) L1ME1|LINE|L1 -10376 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 513.5-19 chr8 121462592 121463170 + 1.5 NA Intergenic L1MA9|LINE|L1 -176465 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 386-14 chr17 75146285 75146686 + 1.5 NA intron (NM_001002032, intron 3 of 3) intron (NM_001002032, intron 3 of 3) 6808 NM_001288610 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 370-31 chr7 106909468 106909854 + 1.5 NA TTS (NM_002649) TTS (NM_002649) 44182 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 154.5-13 chr20 58103861 58104008 + 1.5 NA Intergenic Intergenic -46968 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 452.5 chr1 152623907 152624262 + 1.5 NA promoter-TSS (NM_178431) promoter-TSS (NM_178431) -981 NM_178431 353142 Hs.553714 NM_178431 ENSG00000185962 LCE3A LEP13 late cornified envelope 3A protein-coding 391-22 chr5 89356164 89356650 + 1.5 NA intron (NR_136219, intron 7 of 9) MLT1A|LTR|ERVL-MaLR -452302 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 349.5-30 chr8 55955895 55956219 + 1.5 NA intron (NM_002350, intron 8 of 12) L1MB5|LINE|L1 -53202 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 346.5-9 chr18 52449926 52450350 + 1.5 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 109941 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 215.5-33 chr4 105054592 105054808 + 1.5 NA Intergenic L1PA11|LINE|L1 -91175 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 290.5-6 chr1 225821780 225822095 + 1.5 NA intron (NM_001291163, intron 1 of 8) intron (NM_001291163, intron 1 of 8) -3417 NM_000120 2052 Hs.89649 NM_000120 ENSG00000143819 EPHX1 EPHX|EPOX|HYL1|MEH epoxide hydrolase 1 protein-coding 317.5-6 chr11 73767130 73767344 + 1.5 NA Intergenic Intergenic -6163 NM_198896 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 396.5-26 chr3 164768562 164768947 + 1.5 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 62726 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 338.5-22 chr21 35997869 35998210 + 1.5 NA intron (NR_110418, intron 1 of 5) intron (NR_110418, intron 1 of 5) 6628 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 196-7 chr15 68008416 68008584 + 1.5 NA Intergenic Intergenic -45679 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 540.5 chr1 195314490 195314937 + 1.5 NA Intergenic L1PREC2|LINE|L1 774002 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 588.5-6 chr18 34578544 34579183 + 1.5 NA intron (NM_001198945, intron 1 of 10) L1PB1|LINE|L1 -14472 NM_001128175 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 306.5-22 chr3 25435113 25435434 + 1.5 NA intron (NR_110892, intron 1 of 6) intron (NR_110892, intron 1 of 6) 7010 NM_001290266 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 313-32 chr7 22082350 22082641 + 1.5 NA Intergenic Intergenic 111250 NM_001367603 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 142-10 chr7 109133070 109133255 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -248575 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 213.5-17 chr17 30843863 30844085 + 1.5 NA exon (NM_024857, exon 5 of 23) exon (NM_024857, exon 5 of 23) 12008 NM_024857 79915 Hs.528902 NM_024857 ENSG00000176208 ATAD5 C17orf41|ELG1|FRAG1 ATPase family AAA domain containing 5 protein-coding 297.5-16 chr19 31276228 31276569 + 1.5 NA 3' UTR (NM_020856, exon 2 of 2) 3' UTR (NM_020856, exon 2 of 2) 73038 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 238-27 chr4 31080977 31081186 + 1.5 NA intron (NM_001173523, intron 2 of 2) THE1B|LTR|ERVL-MaLR -90063 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 205-7 chr11 26712034 26712230 + 1.5 NA intron (NM_178498, intron 2 of 14) intron (NM_178498, intron 2 of 14) 9928 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 393-7 chr11 98855611 98855943 + 1.5 NA Intergenic L1MC1|LINE|L1 -165172 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 259.5-21 chr20 45260174 45260422 + 1.5 NA Intergenic Intergenic -5734 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 312.5-5 chr10 100351430 100351694 + 1.5 NA intron (NM_005063, intron 2 of 5) intron (NM_005063, intron 2 of 5) 4329 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 443.5-12 chr3 142153816 142154246 + 1.5 NA Intergenic LTR16E2|LTR|ERVL -4487 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 192-18 chr3 42374541 42374727 + 1.5 NA Intergenic MER102a|DNA|hAT-Charlie 35976 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 383.5-15 chr20 37314294 37314759 + 1.5 NA intron (NM_022077, intron 3 of 3) intron (NM_022077, intron 3 of 3) 24871 NM_001369743 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 320.5-16 chr2 34649011 34649268 + 1.5 NA Intergenic L1MC|LINE|L1 -28418 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 483-2 chr1 81366686 81367105 + 1.5 NA intron (NM_001366003, intron 2 of 27) L2|LINE|L2 60500 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 301-2 chr1 110126981 110127387 + 1.5 NA Intergenic Intergenic 14741 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 449.5-18 chr8 134001317 134001845 + 1.5 NA Intergenic Intergenic 115085 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 177.5-15 chr2 221008759 221009002 + 1.5 NA Intergenic Intergenic 563424 NM_004438 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 259-32 chr9 103822940 103823389 + 1.5 NA Intergenic Intergenic -176545 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 417.5-23 chr7 138337416 138337823 + 1.5 NA Intergenic HAL1|LINE|L1 -122640 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 364.5 chr1 194020415 194020708 + 1.5 NA Intergenic AluJb|SINE|Alu 715816 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 671.5-6 chr7 23209938 23210655 + 1.5 NA Intergenic AluSx1|SINE|Alu 28248 NM_007342 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 311-13 chr19 29260427 29260744 + 1.5 NA Intergenic Intergenic -47434 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 407-8 chr12 8845447 8845914 + 1.5 NA intron (NM_001282424, intron 2 of 24) AluY|SINE|Alu 676 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 583-5 chr14 84580987 84581519 + 1.5 NA Intergenic Intergenic -690679 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 218.5-30 chr7 74307312 74307548 + 1.5 NA intron (NM_032421, intron 1 of 15) MIRb|SINE|MIR 17955 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 217-3 chr11 80085971 80086138 + 1.5 NA Intergenic L2c|LINE|L2 -645024 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 168-4 chr12 132801386 132801539 + 1.5 NA intron (NM_001172557, intron 8 of 15) intron (NM_001172557, intron 8 of 15) 26927 NM_005895 2802 Hs.507333 NM_005895 ENSG00000090615 GOLGA3 GCP170|MEA-2 golgin A3 protein-coding 314.5-37 chr8 141761361 141761627 + 1.5 NA Intergenic Intergenic 24819 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 558.5-4 chr11 16079566 16080167 + 1.5 NA intron (NM_017508, intron 8 of 14) intron (NM_017508, intron 8 of 14) -110245 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 155-13 chr9 99679553 99679758 + 1.5 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 140234 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 199.5-9 chr14 68724189 68724380 + 1.5 NA Intergenic Intergenic 69630 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 382-26 chr2 135371304 135371782 + 1.5 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 159042 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 249-2 chr1 225346494 225346750 + 1.5 NA exon (NM_001367479, exon 71 of 86) exon (NM_001367479, exon 71 of 86) 81416 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 325-10 chr2 118427348 118427742 + 1.5 NA Intergenic Intergenic 175421 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 203-4 chr16 86847978 86848154 + 1.5 NA Intergenic Intergenic 125975 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 230-7 chr12 114631819 114632017 + 1.5 NA Intergenic AluJo|SINE|Alu 52257 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 188-5 chr12 40873944 40874143 + 1.5 NA intron (NM_001256064, intron 1 of 15) L2a|LINE|L2 -34314 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 255-5 chr14 55065724 55065995 + 1.5 NA 3' UTR (NM_144578, exon 4 of 4) 3' UTR (NM_144578, exon 4 of 4) 14212 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 446-13 chr13 28135324 28135796 + 1.5 NA Intergenic Intergenic -2985 NM_175854 255967 Hs.645015 NM_175854 ENSG00000152520 PAN3 - poly(A) specific ribonuclease subunit PAN3 protein-coding 431.5-18 chr6 115923587 115923907 + 1.5 NA Intergenic Intergenic -114984 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 382.5-13 chr2 217607601 217607955 + 1.5 NA intron (NR_026597, intron 1 of 12) MIRb|SINE|MIR 148815 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 276.5-15 chr16 82757457 82757643 + 1.5 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -15769 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 235-32 chr6 139226395 139226590 + 1.5 NA Intergenic L1ME3|LINE|L1 65506 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 208.5-18 chr21 24270909 24271108 + 1.5 NA Intergenic L2a|LINE|L2 50369 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 252.5 chr1 39918618 39918981 + 1.5 NA Intergenic AluSc|SINE|Alu -16882 NM_001033081 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 392-2 chr1 88048336 88048787 + 1.5 NA Intergenic L3|LINE|CR1 -635583 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 164.5-24 chr6 56551174 56551318 + 1.5 NA intron (NM_001144770, intron 53 of 94) intron (NM_001144770, intron 53 of 94) 91643 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 232.5-28 chr6 67435255 67435560 + 1.5 NA Intergenic Intergenic -619944 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 576-9 chr2 231296062 231296636 + 1.5 NA intron (NM_001352759, intron 19 of 19) intron (NM_001352759, intron 19 of 19) -66359 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 190 chr1 217698808 217699012 + 1.5 NA intron (NM_138796, intron 5 of 10) L1MD2|LINE|L1 67566 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 257.5-38 chr6 53212088 53212285 + 1.5 NA Intergenic L1MB2|LINE|L1 -63345 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 301.5-11 chr2 218566355 218566692 + 1.5 NA intron (NM_020935, intron 1 of 25) intron (NM_020935, intron 1 of 25) 1828 NM_020935 57695 Hs.166068 NM_020935 ENSG00000135913 USP37 - ubiquitin specific peptidase 37 protein-coding 361.5-26 chr6 84472067 84472511 + 1.5 NA intron (NR_132100, intron 1 of 4) L1M4|LINE|L1 2640 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 194-5 chr15 67719526 67719741 + 1.5 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -105876 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 356.5-16 chr15 58319302 58319608 + 1.5 NA Intergenic L1MA10|LINE|L1 -112536 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 188.5-24 chr5 125223196 125223365 + 1.5 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 186449 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 218-19 chr19 6536208 6536443 + 1.5 NA TTS (NM_003811) TTS (NM_003811) 5299 NM_003811 8744 Hs.1524 NM_003811 ENSG00000125657 TNFSF9 4-1BB-L|CD137L|TNLG5A TNF superfamily member 9 protein-coding 201.5-10 chr12 92561987 92562139 + 1.5 NA Intergenic Intergenic 95384 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 128.5-11 chr13 89209898 89210066 + 1.5 NA Intergenic Intergenic -25309 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 617.5-13 chr8 130563985 130564716 + 1.5 NA Intergenic Intergenic -120676 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 303.5-13 chr21 30618568 30618976 + 1.5 NA Intergenic Intergenic -1855 NM_001350977 100151643 Hs.580879 NM_001350977 ENSG00000206105 KRTAP20-4 KAP20.4 keratin associated protein 20-4 protein-coding 518.5-9 chr17 11935251 11935881 + 1.5 NA intron (NM_001372, intron 65 of 68) AluSg|SINE|Alu 52664 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 191-11 chr6 26148114 26148306 + 1.5 NA Intergenic L1ME3B|LINE|L1 -8121 NM_005321 3008 Hs.248133 NM_005321 ENSG00000168298 HIST1H1E H1.4|H1E|H1F4|H1s-4|RMNS|dJ221C16.5 histone cluster 1 H1 family member e protein-coding 358.5-18 chr3 81923806 81924066 + 1.5 NA Intergenic Intergenic -62206 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 446-2 chr1 68113810 68114206 + 1.5 NA intron (NR_040077, intron 6 of 9) intron (NR_040077, intron 6 of 9) -62377 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 256-4 chr12 16195323 16195658 + 1.5 NA intron (NM_001170798, intron 7 of 8) intron (NM_001170798, intron 7 of 8) 82195 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 374.5-3 chr11 38051967 38052385 + 1.5 NA Intergenic Intergenic 113575 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 225-26 chr2 173815198 173815435 + 1.5 NA Intergenic Intergenic 148564 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 264.5-28 chr4 188848580 188848914 + 1.5 NA Intergenic L1MA4A|LINE|L1 72090 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 210-25 chr8 130818020 130818201 + 1.5 NA intron (NM_001115, intron 13 of 17) L1MC5|LINE|L1 222799 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 270.5-21 chr3 142901970 142902412 + 1.5 NA Intergenic AluY|SINE|Alu -13108 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 245.5-19 chr2 79422490 79422752 + 1.5 NA Intergenic Intergenic 78223 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 468-31 chr5 16410872 16411399 + 1.5 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 29967 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 187-11 chr2 38772016 38772225 + 1.5 NA Intergenic LTR26|LTR|ERV1 -6090 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 290.5-22 chr5 134662518 134662763 + 1.5 NA intron (NM_021982, intron 2 of 22) intron (NM_021982, intron 2 of 22) 13855 NM_001252231 10802 Hs.595540 NM_021982 ENSG00000113615 SEC24A - SEC24 homolog A, COPII coat complex component protein-coding 333-11 chr17 5295088 5295532 + 1.5 NA intron (NM_001291581, intron 1 of 16) AluSx|SINE|Alu 13026 NM_004703 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 346-16 chr12 104120408 104120868 + 1.5 NA intron (NM_006166, intron 6 of 7) intron (NM_006166, intron 6 of 7) 17572 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 430-8 chr12 32835242 32835708 + 1.5 NA intron (NM_001005242, intron 6 of 12) intron (NM_001005242, intron 6 of 12) 61371 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 355.5-10 chr2 26890073 26890462 + 1.5 NA intron (NM_001253724, intron 1 of 12) L2c|LINE|L2 41843 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 185-2 chr10 60584888 60585031 + 1.5 NA intron (NM_001204403, intron 2 of 43) MIR3|SINE|MIR -12003 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 387-31 chr6 74728904 74729405 + 1.5 NA Intergenic MIR|SINE|MIR 399628 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 213-12 chr3 187519016 187519260 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie 72092 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 157-13 chr5 27961212 27961355 + 1.5 NA Intergenic L1PREC2|LINE|L1 326382 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 281.5-16 chr2 198213533 198213887 + 1.5 NA Intergenic Intergenic 161387 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 367.5-10 chr13 99962887 99963179 + 1.5 NA TTS (NM_033132) TTS (NM_033132) -5868 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 214-12 chr2 181940118 181940456 + 1.5 NA Intergenic L1MB8|LINE|L1 -13954 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 138-10 chr8 134775473 134775617 + 1.5 NA Intergenic L1MEg|LINE|L1 25062 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 401.5-5 chr1 104878045 104878426 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 740700 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 267.5-28 chr8 81966114 81966510 + 1.5 NA Intergenic Intergenic -124026 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 346.5-34 chr9 103625458 103625828 + 1.5 NA Intergenic Intergenic -300610 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 157.5-3 chr10 87614992 87615173 + 1.5 NA Intergenic L3|LINE|CR1 -44796 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 121-2 chr7 45438829 45438994 + 1.5 NA Intergenic Intergenic -135229 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 264.5-29 chr5 27689952 27690246 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 217807 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 424-26 chr9 74809020 74809528 + 1.5 NA intron (NM_017662, intron 13 of 38) intron (NM_017662, intron 13 of 38) 78073 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 493-24 chr6 148165696 148166093 + 1.5 NA Intergenic Intergenic -106434 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 130-3 chr15 52521430 52521576 + 1.5 NA intron (NM_001142495, intron 1 of 39) CR1_Mam|LINE|CR1 7377 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 259.5-2 chr1 107532717 107533085 + 1.5 NA Intergenic Intergenic 155598 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 423.5-15 chr18 4769223 4769586 + 1.5 NA Intergenic Intergenic -311778 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 297.5-4 chr10 7556628 7557044 + 1.5 NA Intergenic Intergenic 62837 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 331-37 chr5 120063689 120063995 + 1.5 NA Intergenic Intergenic -400436 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 447.5-20 chr5 96125023 96125453 + 1.5 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 46100 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 479-25 chr8 143446557 143447037 + 1.5 NA intron (NM_015117, intron 9 of 11) intron (NM_015117, intron 9 of 11) -16065 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 270.5-17 chr2 177047309 177047611 + 1.5 NA Intergenic Intergenic 164951 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 290 chr1 5243500 5243863 + 1.5 NA Intergenic Intergenic 589072 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 245.5-16 chr19 50303174 50303613 + 1.5 NA intron (NM_024729, intron 38 of 40) MLT1H|LTR|ERVL-MaLR 25984 NM_004977 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 310-21 chr2 65695419 65695804 + 1.5 NA Intergenic L2c|LINE|L2 -263012 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 140.5-20 chr3 43955442 43955624 + 1.5 NA Intergenic Intergenic -158679 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 304-22 chr20 58206228 58206647 + 1.5 NA Intergenic Intergenic 22216 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 239.5-12 chr2 116411016 116411188 + 1.5 NA Intergenic Intergenic 1067287 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 228.5-26 chr4 31391664 31391878 + 1.5 NA Intergenic Intergenic -114773 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 267.5-25 chr7 104761917 104762238 + 1.5 NA intron (NM_199000, intron 2 of 2) MER5A1|DNA|hAT-Charlie 42015 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 211-7 chr14 53191835 53192003 + 1.5 NA Intergenic Intergenic 38565 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 236-24 chr5 5824939 5825148 + 1.5 NA Intergenic Intergenic 402366 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 657-9 chr22 42262735 42263435 + 1.5 NA intron (NM_005650, intron 1 of 5) MIRb|SINE|MIR -6668 NR_036498 388906 Hs.730075 NR_036498 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 316.5-19 chr4 102756398 102756790 + 1.5 NA intron (NM_005908, intron 1 of 16) L1PA5|LINE|L1 4374 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 353-22 chr2 83594150 83594470 + 1.5 NA Intergenic L1MB5|LINE|L1 71496 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 235-28 chr4 94179574 94179753 + 1.5 NA intron (NR_125922, intron 1 of 8) MER92-int|LTR|ERV1 27893 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 259.5-25 chr3 43755802 43756020 + 1.5 NA Intergenic Intergenic -64317 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 223-7 chr13 68267991 68268224 + 1.5 NA Intergenic Intergenic 617218 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 283.5-8 chr11 115849325 115849573 + 1.5 NA Intergenic L1MEh|LINE|L1 -89249 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 361.5-12 chr19 56125602 56125927 + 1.5 NA Intergenic Intergenic -4469 NM_001002836 126208 Hs.397153 NM_001002836 ENSG00000142409 ZNF787 TIP20 zinc finger protein 787 protein-coding 379.5-24 chr8 125901107 125901759 + 1.5 NA Intergenic L1MB2|LINE|L1 49764 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 196.5-6 chr12 18032766 18032973 + 1.5 NA Intergenic Intergenic 57324 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 344.5-8 chr12 22906686 22906983 + 1.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -268802 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 521-13 chr5 3916076 3916754 + 1.5 NA Intergenic Intergenic 320583 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 318.5-9 chr15 59685653 59685926 + 1.5 NA intron (NM_001368059, intron 1 of 8) intron (NM_001368059, intron 1 of 8) 3137 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 309-31 chr5 6596930 6597234 + 1.5 NA Intergenic Intergenic 13806 NR_024424 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 425.5-24 chr9 97497076 97497510 + 1.5 NA Intergenic L2|LINE|L2 -3887 NM_001166116 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 298.5-5 chr10 63102120 63102562 + 1.5 NA Intergenic AluSq2|SINE|Alu -30906 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 327.5-29 chr8 126496023 126496274 + 1.5 NA Intergenic AluSx1|SINE|Alu 62330 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 181-6 chr16 12139244 12139500 + 1.5 NA intron (NM_032167, intron 13 of 20) L2b|LINE|L2 162638 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 493-10 chr16 55438292 55438742 + 1.5 NA intron (NR_147198, intron 4 of 6) L1MB3|LINE|L1 23780 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 247.5-30 chr8 16367934 16368148 + 1.5 NA Intergenic Intergenic -175250 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 525-24 chr7 46550773 46551212 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 146130 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 369-10 chr10 132442668 132442969 + 1.5 NA Intergenic Intergenic -2371 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 215.5-32 chr4 25318791 25318934 + 1.5 NA intron (NM_001318148, intron 3 of 8) intron (NM_001318148, intron 3 of 8) 6088 NM_001318148 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 307.5-14 chr16 28073682 28073977 + 1.5 NA Intergenic Intergenic -10115 NM_001323900 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 204-16 chr4 134070700 134070926 + 1.5 NA Intergenic L1PA15|LINE|L1 130976 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 152.5-26 chr8 73278817 73278935 + 1.5 NA Intergenic Intergenic 14757 NM_000971 6129 Hs.421257 NM_000971 ENSG00000147604 RPL7 L7|humL7-1 ribosomal protein L7 protein-coding 294-33 chr6 2055874 2056173 + 1.5 NA intron (NM_001253846, intron 4 of 10) MER104|DNA|TcMar-Tc2 119968 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 277.5-24 chr3 134334271 134334492 + 1.5 NA Intergenic Intergenic 20805 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 158.5-5 chr14 20508120 20508256 + 1.5 NA Intergenic L1MC4|LINE|L1 -2284 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 438-2 chr1 83534850 83535262 + 1.5 NA Intergenic L2a|LINE|L2 89002 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 385.5-37 chr5 10168101 10168451 + 1.5 NA Intergenic Intergenic 81612 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 230 chr1 36233514 36233667 + 1.5 NA intron (NM_001321471, intron 2 of 12) AluJb|SINE|Alu 9147 NM_005119 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 BCLAF2|TRAP150 thyroid hormone receptor associated protein 3 protein-coding 448-4 chr10 26142829 26143405 + 1.5 NA intron (NM_017433, intron 20 of 34) AluSz|SINE|Alu -73190 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 353-29 chr4 71212919 71213223 + 1.5 NA intron (NM_001098484, intron 1 of 25) Tigger3a|DNA|TcMar-Tigger 25785 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 163-5 chr18 40785192 40785378 + 1.5 NA Intergenic Intergenic 718999 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 158.5-10 chr18 46156476 46156656 + 1.5 NA Intergenic Intergenic -17456 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 304-16 chr18 51078120 51078421 + 1.5 NA exon (NM_005359, exon 12 of 12) exon (NM_005359, exon 12 of 12) 48057 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 373-13 chr13 29788460 29788769 + 1.5 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 62003 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 280-9 chr11 111972474 111972706 + 1.5 NA intron (NM_001278542, intron 4 of 5) L2c|LINE|L2 -4719 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 251-27 chr4 92418228 92418423 + 1.5 NA intron (NM_001286838, intron 1 of 14) L2b|LINE|L2 113926 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 459-12 chr2 56761659 56762013 + 1.5 NA Intergenic Intergenic -576066 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 295-34 chr4 26764009 26764538 + 1.5 NA Intergenic LTR79|LTR|ERVL 95971 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 379-7 chr1 191599741 191600171 + 1.5 NA Intergenic Intergenic -371458 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 464.5-21 chr7 135835182 135835628 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -86592 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 198.5-7 chr16 68307636 68307818 + 1.5 NA intron (NM_032178, intron 2 of 4) L1ME4c|LINE|L1 3219 NM_032178 84138 Hs.729520 NM_032178 ENSG00000103061 SLC7A6OS - solute carrier family 7 member 6 opposite strand protein-coding 430-33 chr6 51846182 51846590 + 1.5 NA intron (NM_138694, intron 50 of 66) intron (NM_138694, intron 50 of 66) 224516 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 296.5-21 chr3 37886525 37886849 + 1.5 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) 24807 NM_001008392 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 335-35 chr21 35155437 35155783 + 1.5 NA Intergenic Intergenic -106312 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 516.5-7 chr2 102323414 102323851 + 1.5 NA intron (NM_001282408, intron 1 of 6) MSTB1|LTR|ERVL-MaLR 12069 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 419.5-17 chr5 83531627 83532014 + 1.5 NA intron (NR_136215, intron 2 of 2) intron (NR_136215, intron 2 of 2) 30494 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 205.5-14 chr3 190151253 190151522 + 1.5 NA Intergenic Intergenic -28950 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 199-8 chr2 8870778 8870948 + 1.5 NA intron (NR_135606, intron 8 of 12) intron (NR_135606, intron 8 of 12) -33250 NM_001348732 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 175-12 chr3 162882386 162882646 + 1.5 NA Intergenic L2a|LINE|L2 420785 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 572-18 chr8 135197021 135197770 + 1.5 NA Intergenic Intergenic -36736 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 465-29 chr3 136889089 136889585 + 1.5 NA intron (NM_001291999, intron 1 of 3) LTR12C|LTR|ERV1 27129 NM_006153 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 422.5-13 chr3 96699620 96700121 + 1.5 NA Intergenic LTR1A2|LTR|ERV1 -114724 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 275-18 chr17 61958146 61958362 + 1.5 NA intron (NM_005121, intron 23 of 29) AluSx|SINE|Alu -30272 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 310.5-26 chr2 150737960 150738274 + 1.5 NA Intergenic L1ME1|LINE|L1 109220 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 209-16 chr2 215152064 215152290 + 1.5 NA Intergenic Intergenic -13551 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 266 chr1 119768092 119768308 + 1.5 NA intron (NM_005518, intron 1 of 9) intron (NM_005518, intron 1 of 9) 732 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 212-6 chr14 52114072 52114298 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X -45126 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 220.5-26 chr5 56167074 56167306 + 1.5 NA intron (NM_024669, intron 5 of 11) Tigger3a|DNA|TcMar-Tigger 66140 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 205-8 chr11 33489927 33490180 + 1.5 NA intron (NM_012194, intron 1 of 20) MIRb|SINE|MIR 113945 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 472.5-12 chr4 140547054 140547567 + 1.5 NA intron (NM_153702, intron 8 of 8) intron (NM_153702, intron 8 of 8) 21651 NM_021833 7350 Hs.249211 NM_021833 ENSG00000109424 UCP1 SLC25A7|UCP uncoupling protein 1 protein-coding 488-18 chr8 101279733 101280392 + 1.5 NA Intergenic Intergenic -73998 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 169.5-13 chr3 95246304 95246541 + 1.5 NA Intergenic Intergenic 308159 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 455-4 chr1 221037881 221038280 + 1.5 NA Intergenic L1PA13|LINE|L1 -157940 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 430-4 chr1 197168679 197169232 + 1.5 NA intron (NM_194314, intron 9 of 9) L1ME3|LINE|L1 -22261 NM_001206846 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 133.5-20 chr6 17358187 17358289 + 1.5 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -35267 NM_001363534 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 322.5-15 chr2 149227945 149228449 + 1.5 NA Intergenic Intergenic -101788 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 289.5-26 chr21 21051398 21051775 + 1.5 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 53177 NM_001352595 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 245.5-26 chr5 120260536 120260926 + 1.5 NA Intergenic L1M4b|LINE|L1 -203547 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 326.5-30 chr6 91155866 91156242 + 1.5 NA Intergenic Intergenic -365606 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 387.5-23 chr6 54609648 54610162 + 1.5 NA Intergenic Intergenic -236866 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 296.5-33 chr7 2950171 2950436 + 1.5 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93564 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 223.5-20 chr2 200638987 200639145 + 1.5 NA intron (NM_001159, intron 23 of 34) MER3|DNA|hAT-Charlie 53052 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 236.5-6 chr1 221121048 221121333 + 1.5 NA Intergenic Intergenic 215106 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 529.5-7 chr12 32003471 32004007 + 1.5 NA Intergenic AluJb|SINE|Alu 44324 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 225.5-4 chr1 95491781 95492038 + 1.5 NA Intergenic L2a|LINE|L2 17172 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 387.5-9 chr17 39623130 39623444 + 1.5 NA Intergenic Intergenic -3665 NM_032192 84152 Hs.286192 NM_032192 ENSG00000131771 PPP1R1B DARPP-32|DARPP32 protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding 371.5-7 chr11 119721602 119722022 + 1.5 NA intron (NM_203285, intron 1 of 7) intron (NM_203285, intron 1 of 7) 7388 NM_203286 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 383-15 chr2 102705293 102705678 + 1.5 NA intron (NM_003048, intron 10 of 11) intron (NM_003048, intron 10 of 11) 31403 NM_001322081 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 187-24 chr5 141764304 141764518 + 1.5 NA Intergenic Intergenic -82181 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 305-17 chr18 7593704 7594095 + 1.5 NA intron (NM_002845, intron 1 of 30) MIRc|SINE|MIR 26583 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 312.5-18 chr3 68539277 68539565 + 1.5 NA intron (NM_001252216, intron 4 of 4) MamRep38|DNA|hAT 38784 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 480-28 chr5 125205132 125205580 + 1.5 NA intron (NR_109882, intron 4 of 5) MER33|DNA|hAT-Charlie 168525 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 326-2 chr1 98791702 98792041 + 1.5 NA Intergenic Intergenic 130150 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 400.5-21 chr5 72411243 72411549 + 1.5 NA Intergenic Intergenic 91023 NM_001284403 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 239.5-2 chr10 126430468 126430628 + 1.5 NA intron (NM_001004298, intron 6 of 8) intron (NM_001004298, intron 6 of 8) 4618 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 181-21 chr8 137205788 137205992 + 1.5 NA Intergenic L3|LINE|CR1 207698 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 309.5-2 chr1 213648007 213648375 + 1.5 NA Intergenic MER119|DNA|hAT-Charlie -276558 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 282.5-11 chr12 74422698 74422981 + 1.5 NA Intergenic AluSx1|SINE|Alu -114996 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 118.5-5 chr19 16433970 16434116 + 1.5 NA intron (NM_021235, intron 7 of 22) intron (NM_021235, intron 7 of 22) 37927 NM_001258374 58513 Hs.654639 NM_021235 ENSG00000127527 EPS15L1 EPS15R epidermal growth factor receptor pathway substrate 15 like 1 protein-coding 228-14 chr6 85068502 85068763 + 1.5 NA Intergenic Intergenic -304034 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 139-4 chr2 82336534 82336720 + 1.5 NA Intergenic Intergenic -520176 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 359.5-24 chr20 55839371 55839690 + 1.5 NA Intergenic L1M1|LINE|L1 165989 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 452-11 chr16 69052532 69053078 + 1.5 NA intron (NM_024562, intron 17 of 17) MIR|SINE|MIR -52848 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 266-15 chr16 79875730 79876037 + 1.5 NA Intergenic Intergenic 80634 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 315.5-19 chr2 66238451 66238909 + 1.5 NA Intergenic Intergenic 119648 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 224-16 chr2 125155528 125155709 + 1.5 NA Intergenic Intergenic 962367 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 244-27 chr6 51700454 51700758 + 1.5 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 78736 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 304-15 chr18 30661854 30662216 + 1.5 NA Intergenic L1PA11|LINE|L1 363125 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 275.5-22 chr21 31346727 31347071 + 1.5 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -2545 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 271-15 chr2 235253431 235253613 + 1.5 NA Intergenic L1PA10|LINE|L1 225787 NM_001371306 477.5-6 chr10 69482416 69482765 + 1.5 NA intron (NM_001351263, intron 1 of 5) intron (NM_001351263, intron 1 of 5) 31123 NR_147091 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 243-17 chr19 49416452 49416723 + 1.5 NA intron (NM_144688, intron 17 of 19) intron (NM_144688, intron 17 of 19) 6854 NM_178449 113091 Hs.339845 NM_178449 ENSG00000142538 PTH2 TIP39 parathyroid hormone 2 protein-coding 373.5-16 chr20 38646663 38647115 + 1.5 NA intron (NM_001164431, intron 12 of 14) intron (NM_001164431, intron 12 of 14) 45080 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 545.5-11 chr5 72131869 72132280 + 1.5 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 24599 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 371.5-16 chr2 75459212 75459492 + 1.5 NA Intergenic MLT1O|LTR|ERVL-MaLR -64716 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 277.5-13 chr15 99405938 99406319 + 1.5 NA Intergenic Intergenic 148603 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 275-15 chr15 58176549 58176859 + 1.5 NA intron (NM_001320635, intron 4 of 4) AluSg|SINE|Alu 38323 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 481-6 chr16 26188952 26189395 + 1.5 NA Intergenic LTR51|LTR|ERV1 163936 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 257.5-40 chr6 132383499 132383720 + 1.5 NA intron (NM_015529, intron 1 of 11) intron (NM_015529, intron 1 of 11) 17866 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 195 chr1 47784993 47785162 + 1.5 NA intron (NM_001194986, intron 4 of 6) L2c|LINE|L2 212308 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 224 chr1 36658921 36659112 + 1.5 NA Intergenic LTR33|LTR|ERVL -175702 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 149.5-13 chr5 82150360 82150482 + 1.5 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 127933 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 306-13 chr2 29812951 29813313 + 1.5 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 108454 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 263.5-32 chr9 125856877 125857201 + 1.5 NA intron (NR_024122, intron 2 of 7) intron (NR_024122, intron 2 of 7) 108856 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 208.5-7 chr16 85949673 85949845 + 1.5 NA Intergenic AluJr|SINE|Alu 31412 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 238-21 chr2 28721098 28721337 + 1.5 NA intron (NR_145832, intron 1 of 1) AluSx|SINE|Alu 14988 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 171-18 chr7 47752494 47752635 + 1.5 NA Intergenic L1MC4|LINE|L1 -8912 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 394-30 chr9 121703873 121704305 + 1.5 NA intron (NM_032552, intron 3 of 16) L1ME4a|LINE|L1 -38696 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 368-25 chr3 128616458 128616977 + 1.5 NA Intergenic Intergenic 34101 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 278.5-23 chr6 120665193 120665501 + 1.5 NA Intergenic AluSz6|SINE|Alu 650168 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 254-39 chr7 70312903 70313104 + 1.5 NA intron (NM_015570, intron 4 of 18) L3|LINE|CR1 714528 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 219.5-38 chr8 3025831 3026048 + 1.5 NA intron (NM_033225, intron 51 of 69) intron (NM_033225, intron 51 of 69) -297488 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 144.5-2 chr11 38899545 38899677 + 1.5 NA Intergenic Intergenic 250753 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 294-4 chr1 119161834 119162211 + 1.5 NA intron (NR_125975, intron 4 of 6) L1PA2|LINE|L1 -21350 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 209-27 chr9 19657312 19657579 + 1.5 NA intron (NM_020344, intron 1 of 9) L1PA8|LINE|L1 129574 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 282.5-27 chr6 165478671 165478995 + 1.5 NA intron (NM_006661, intron 4 of 22) MER4D1|LTR|ERV1 -169228 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 416.5-2 chr1 229688441 229689027 + 1.5 NA Intergenic AluSx1|SINE|Alu 62487 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 443.5-16 chr8 102445189 102445645 + 1.5 NA Intergenic AluSq2|SINE|Alu -32717 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 274-28 chr4 174210899 174211262 + 1.5 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 9318 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 453-6 chr12 61152688 61153166 + 1.5 NA Intergenic Intergenic 1039912 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 241.5-14 chr16 53467153 53467360 + 1.5 NA intron (NM_001323608, intron 14 of 22) intron (NM_001323608, intron 14 of 22) 31637 NM_001323611 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 197-14 chr2 5412038 5412287 + 1.5 NA Intergenic Intergenic 278956 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 174-23 chr4 122405949 122406171 + 1.5 NA intron (NM_001159285, intron 6 of 11) L1MA9|LINE|L1 26542 NM_001159295 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 137.5-8 chr12 116366602 116366756 + 1.5 NA Intergenic Intergenic 61639 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 345.5-35 chr8 132587529 132587975 + 1.5 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -26273 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 215.5-2 chr1 116706949 116707120 + 1.5 NA TTS (NR_149353) TTS (NR_149353) 12922 NR_149353 388667 Hs.127851 NR_149353 ENSG00000203864 C1orf137 - chromosome 1 open reading frame 137 (putative) ncRNA 227-27 chr3 98717516 98717693 + 1.5 NA intron (NR_046683, intron 2 of 4) MIR|SINE|MIR -14632 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 415-9 chr11 50688904 50689234 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 279922 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 215-7 chr10 82660917 82661143 + 1.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -428110 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 298.5 chr1 92619191 92619413 + 1.5 NA intron (NM_001350198, intron 16 of 19) MLT2A1|LTR|ERVL -132377 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 478-11 chr17 45010811 45011405 + 1.5 NA Intergenic Intergenic 40524 NM_001288655 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 256.5-30 chr6 71922702 71923088 + 1.5 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 36192 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 335-5 chr11 57975854 57976219 + 1.5 NA Intergenic L1MB2|LINE|L1 -47845 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 265-16 chr17 82654138 82654553 + 1.5 NA TTS (NM_006822) TTS (NM_006822) -5901 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 154.5-16 chr3 35516094 35516217 + 1.5 NA Intergenic L1MC5|LINE|L1 -122132 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 651-2 chr11 29865175 29865947 + 1.5 NA Intergenic Intergenic 116832 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 326.5-26 chr5 8881346 8881616 + 1.5 NA TTS (NR_109932) TTS (NR_109932) 41749 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 547.5-14 chr7 45363834 45364358 + 1.5 NA Intergenic MER67B|LTR|ERV1 206305 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 323-11 chr17 9610885 9611323 + 1.5 NA intron (NM_001080556, intron 6 of 12) intron (NM_001080556, intron 6 of 12) -34413 NM_153210 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 392.5-29 chrX 100660861 100661375 + 1.5 NA intron (NM_014467, intron 3 of 10) L1ME1|LINE|L1 16919 NM_014467 27286 Hs.306339 NM_014467 ENSG00000102359 SRPX2 BPP|CBPS|PMGX|RESDX|SRPUL sushi repeat containing protein X-linked 2 protein-coding 278-28 chr9 14410633 14410952 + 1.5 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -11809 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 432-2 chr11 100615376 100615840 + 1.5 NA Intergenic L1PB1|LINE|L1 -71680 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 132.5-21 chr8 101560998 101561098 + 1.5 NA intron (NM_024915, intron 4 of 15) L1ME1|LINE|L1 68609 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 388-37 chr9 129274866 129275230 + 1.5 NA Intergenic Intergenic -7368 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 175-5 chr14 63132242 63132435 + 1.5 NA Intergenic L1MA9|LINE|L1 -72105 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 175-15 chr6 91937521 91937728 + 1.5 NA Intergenic Intergenic -247196 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 151.5-17 chr3 182386178 182386340 + 1.5 NA Intergenic Intergenic 100103 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 191.5-12 chr2 107690465 107690622 + 1.5 NA Intergenic L1ME3A|LINE|L1 -63569 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 421.5-9 chr12 40967989 40968360 + 1.5 NA intron (NM_001843, intron 15 of 23) MIR|SINE|MIR 59817 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 210-10 chr17 80561741 80561993 + 1.5 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 17029 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 245-6 chr10 16653105 16653341 + 1.5 NA intron (NM_152724, intron 7 of 7) MIRc|SINE|MIR -131344 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 233.5-37 chr8 126035125 126035429 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -84080 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 238-18 chr17 76494123 76494306 + 1.5 NA intron (NM_024599, intron 1 of 18) intron (NM_024599, intron 1 of 18) -6305 NM_001005498 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 432.5 chr1 56412684 56413238 + 1.5 NA Intergenic AluSz6|SINE|Alu -2002 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 414-38 chr7 54365738 54366076 + 1.5 NA Intergenic HAL1ME|LINE|L1 35210 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 194-24 chr8 80569917 80570071 + 1.5 NA Intergenic Intergenic 83768 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 244.5-43 chr8 143208320 143208541 + 1.5 NA Intergenic Intergenic -4788 NM_178172 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 364.5-6 chr13 83550088 83550450 + 1.5 NA Intergenic Intergenic 332124 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 218.5-19 chr3 7373249 7373457 + 1.5 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 161931 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 242.5-36 chr7 125326959 125327211 + 1.5 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) -62794 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 308.5-12 chr15 73425986 73426330 + 1.5 NA Intergenic MIRb|SINE|MIR -17006 NM_001042367 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 412.5-22 chr3 122565020 122565352 + 1.5 NA promoter-TSS (NM_001146106) promoter-TSS (NM_001146106) -402 NM_001146103 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 260-34 chr7 133821991 133822228 + 1.5 NA intron (NM_021807, intron 11 of 17) intron (NM_021807, intron 11 of 17) 2779 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 401.5-26 chr5 124141904 124142335 + 1.5 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 296401 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 251-36 chr8 81873031 81873359 + 1.5 NA Intergenic Intergenic -30909 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 175-17 chr8 72861029 72861265 + 1.5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 129102 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 265-33 chr6 167419865 167420158 + 1.5 NA Intergenic Intergenic -35501 NR_163194 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 177-7 chr16 52297887 52298118 + 1.5 NA Intergenic Intergenic 39438 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 215-25 chr4 103803207 103803418 + 1.5 NA Intergenic Intergenic -83327 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 444.5-3 chr12 53437430 53437775 + 1.5 NA Intergenic L1P3|LINE|L1 -4047 NM_001005354 54458 Hs.744894 NM_018457 ENSG00000205352 PRR13 TXR1 proline rich 13 protein-coding 500.5-16 chr7 1057678 1058328 + 1.5 NA exon (NM_138445, exon 2 of 2) exon (NM_138445, exon 2 of 2) 2633 NM_001303474 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 230-24 chr4 22540472 22540683 + 1.5 NA Intergenic MIRb|SINE|MIR -24511 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 315-32 chr6 50526902 50527164 + 1.5 NA Intergenic Intergenic -186511 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 305.5-17 chr2 138120393 138120850 + 1.5 NA Intergenic Intergenic 18737 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 119.5-6 chr16 72912480 72912617 + 1.5 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 135580 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 374-15 chr2 10948276 10948703 + 1.5 NA Intergenic Intergenic 36555 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 172-9 chr18 8302662 8302787 + 1.5 NA intron (NM_002845, intron 18 of 30) L2a|LINE|L2 64310 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 278.5-11 chr20 49698905 49699225 + 1.5 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 14813 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 544-4 chr14 53721872 53722510 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 226293 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 339.5-6 chr11 76612344 76612596 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie 57468 NM_001370188 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 196-19 chr6 143214369 143214576 + 1.5 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 49690 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 310-14 chr16 67780669 67781063 + 1.5 NA intron (NM_001320238, intron 1 of 12) intron (NM_001320238, intron 1 of 12) 25694 NM_020850 57610 Hs.368569 NM_020850 ENSG00000141084 RANBP10 - RAN binding protein 10 protein-coding 203.5-12 chr17 39892511 39892711 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 24409 NM_199321 124626 Hs.367245 NM_198844 ENSG00000186075 ZPBP2 ZPBPL zona pellucida binding protein 2 protein-coding 753.5-5 chr7 41692551 41693458 + 1.5 NA promoter-TSS (NR_027119) promoter-TSS (NR_027119) -915 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 199-13 chr3 13324293 13324479 + 1.5 NA intron (NM_024923, intron 33 of 39) intron (NM_024923, intron 33 of 39) 95936 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 221-3 chr1 25932488 25932799 + 1.5 NA Intergenic MIRb|SINE|MIR -25766 NM_203399 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 250-37 chr6 81242160 81242372 + 1.5 NA Intergenic L2c|LINE|L2 510415 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 321-5 chr11 81345289 81345633 + 1.5 NA Intergenic MIR|SINE|MIR 545375 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 165.5-16 chr5 8844968 8845181 + 1.5 NA intron (NR_109932, intron 1 of 2) intron (NR_109932, intron 1 of 2) 5342 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 446-11 chr12 10374235 10374576 + 1.5 NA intron (NR_120430, intron 2 of 3) AluSq2|SINE|Alu 10636 NR_120430 101928100 Hs.638425 NR_120430 ENSG00000245648 LOC101928100 - uncharacterized LOC101928100 ncRNA 233-15 chr2 66993563 66993960 + 1.5 NA Intergenic Intergenic -71271 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 248.5-5 chr11 3664501 3664832 + 1.5 NA TTS (NM_004314) TTS (NM_004314) 6718 NM_001303034 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 193-19 chr5 52894682 52894907 + 1.5 NA intron (NM_181501, intron 9 of 28) intron (NM_181501, intron 9 of 28) -94558 NR_073103 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 167-12 chr5 131797201 131797413 + 1.5 NA promoter-TSS (NM_001008738) promoter-TSS (NM_001008738) -290 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 326.5-5 chr10 96000770 96001178 + 1.5 NA intron (NM_001159747, intron 2 of 11) intron (NM_001159747, intron 2 of 11) 883 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 207.5-41 chr9 104486123 104486318 + 1.5 NA Intergenic MIRb|SINE|MIR -18043 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 176-13 chr6 97391812 97392075 + 1.5 NA intron (NR_110757, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat 86357 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 312-31 chr5 129063945 129064440 + 1.5 NA Intergenic Intergenic -30557 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 336-33 chr20 15255570 15255836 + 1.5 NA intron (NM_001351663, intron 6 of 17) MER110|LTR|ERV1 58863 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 203.5-19 chr3 4578239 4578427 + 1.5 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 84985 NM_001099952 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 557-20 chr6 141634863 141635562 + 1.5 NA Intergenic Intergenic 453587 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 225-12 chr14 80580191 80580524 + 1.5 NA intron (NM_152446, intron 20 of 24) intron (NM_152446, intron 20 of 24) -349300 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 260-16 chr2 136629399 136629674 + 1.5 NA Intergenic Intergenic -136009 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 231.5-31 chr6 140020459 140020692 + 1.5 NA intron (NR_121623, intron 1 of 1) MSTA-int|LTR|ERVL-MaLR -29314 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 277-38 chr5 104709693 104709974 + 1.5 NA Intergenic MER54A|LTR|ERVL -389641 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 193 chr1 75315857 75315994 + 1.5 NA intron (NM_001320287, intron 4 of 24) L2c|LINE|L2 181537 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 326-33 chr6 91703431 91703820 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -13197 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 245-18 chr18 4637898 4638192 + 1.5 NA Intergenic Intergenic -182738 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 266-27 chr20 45164115 45164385 + 1.5 NA Intergenic L1M4|LINE|L1 -10652 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 156.5-13 chr2 156670464 156670644 + 1.5 NA Intergenic L1MB3|LINE|L1 234175 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 429-14 chr18 51333609 51333982 + 1.5 NA Intergenic L1MB8|LINE|L1 -58247 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 193-16 chr3 104290501 104290689 + 1.5 NA Intergenic AluSx1|SINE|Alu -766479 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 311.5 chr1 16458422 16458697 + 1.5 NA intron (NM_018090, intron 7 of 7) AluJb|SINE|Alu -2389 NR_147210 107984921 Hs.528312 NR_147210 ENSG00000226029 LINC01772 - long intergenic non-protein coding RNA 1772 ncRNA 177.5-7 chr10 18842765 18842904 + 1.5 NA Intergenic AluJb|SINE|Alu 183403 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 268.5-35 chr9 8923657 8924085 + 1.5 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 65853 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 304-2 chr1 70115718 70116154 + 1.5 NA intron (NM_001370785, intron 26 of 26) intron (NM_001370785, intron 26 of 26) 89643 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 430-38 chr8 26727554 26727947 + 1.5 NA Intergenic Intergenic 137905 NM_001322502 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 151-5 chr14 100526779 100526984 + 1.5 NA intron (NM_001350950, intron 4 of 5) (ACC)n|Simple_repeat|Simple_repeat 41189 NM_001159531 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 325-32 chr8 81415061 81415341 + 1.5 NA Intergenic L1PA12|LINE|L1 32238 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 253.5-21 chr20 51443914 51444096 + 1.5 NA intron (NM_012340, intron 6 of 10) AluSx|SINE|Alu 8972 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 272-24 chr3 134305964 134306368 + 1.5 NA Intergenic HAL1|LINE|L1 -7410 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 289-10 chr10 105980615 105980960 + 1.5 NA Intergenic Intergenic -159378 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 339.5-18 chr3 937124 937395 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -155765 NM_001349354 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 389.5-28 chr8 131154725 131155077 + 1.5 NA Intergenic Intergenic -113992 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 157-11 chr22 50439334 50439528 + 1.5 NA intron (NM_001242899, intron 18 of 22) intron (NM_001242899, intron 18 of 22) 31989 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 224-10 chr16 49049043 49049213 + 1.5 NA Intergenic Intergenic 232710 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 459.5-4 chr10 109479477 109479936 + 1.5 NA Intergenic MIRc|SINE|MIR 443540 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 500.5-6 chr2 46425865 46426558 + 1.5 NA Intergenic AluSx1|SINE|Alu -2979 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 460.5-37 chr8 134893436 134893889 + 1.5 NA Intergenic LTR85a|LTR|Gypsy? 43727 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 212-12 chr18 14035416 14035621 + 1.5 NA Intergenic Intergenic 96917 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 169.5-4 chr12 92609597 92609775 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie -93157 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 353.5-10 chr14 65335233 65335512 + 1.5 NA promoter-TSS (NR_039857) promoter-TSS (NR_039857) -189 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 210.5-2 chr11 84686175 84686421 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 34644 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 158 chr1 108880121 108880254 + 1.5 NA intron (NM_001321038, intron 1 of 14) intron (NM_001321038, intron 1 of 14) 3202 NM_001321039 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 408.5-3 chr10 91845068 91845445 + 1.5 NA intron (NM_025235, intron 17 of 26) intron (NM_025235, intron 17 of 26) 46830 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 419-9 chr11 106702841 106703229 + 1.5 NA intron (NM_001256424, intron 8 of 8) MLT2A2|LTR|ERVL 315441 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 379.5-18 chr4 44652247 44652600 + 1.5 NA promoter-TSS (NM_182592) promoter-TSS (NM_182592) -782 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 341-20 chr2 181129760 181130148 + 1.5 NA intron (NR_130784, intron 1 of 4) LTR27|LTR|ERV1 6117 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 225.5-16 chr16 71448831 71449005 + 1.5 NA exon (NM_001304494, exon 3 of 3) exon (NM_001304494, exon 3 of 3) -6864 NM_001367365 180-11 chr5 9872427 9872643 + 1.5 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 18158 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 262-3 chr1 184838909 184839121 + 1.5 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -84157 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 329.5-24 chr9 32005258 32005609 + 1.5 NA Intergenic L1ME4b|LINE|L1 -379170 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 522-33 chr8 114063062 114063561 + 1.5 NA Intergenic Intergenic -626372 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 518.5-18 chr7 10620834 10621349 + 1.5 NA intron (NR_147499, intron 1 of 2) THE1B|LTR|ERVL-MaLR -81585 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 131.5-23 chr5 53426490 53426577 + 1.5 NA Intergenic Intergenic -54096 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 367.5-11 chr14 67062132 67062706 + 1.5 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -127021 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 413.5-6 chr12 18402568 18402928 + 1.5 NA intron (NM_001288774, intron 16 of 32) MIR3|SINE|MIR 141208 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 341-40 chrX 78800424 78800793 + 1.5 NA Intergenic Intergenic 52888 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 276-18 chr16 78470867 78471252 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 371405 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 213.5-11 chr13 32222691 32222876 + 1.5 NA intron (NM_023037, intron 36 of 60) MIR|SINE|MIR 89171 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 249.5-25 chr5 15855197 15855397 + 1.5 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -79885 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 247.5-4 chr1 178832033 178832325 + 1.5 NA intron (NM_152663, intron 7 of 19) intron (NM_152663, intron 7 of 19) 38898 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 419-12 chr17 30415826 30416210 + 1.5 NA intron (NM_001304, intron 2 of 20) L1MB2|LINE|L1 35540 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 201.5-19 chr2 59992670 59992929 + 1.5 NA Intergenic Intergenic 390237 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 395.5 chr10 33015099 33015568 + 1.5 NA Intergenic Intergenic -57103 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 400.5-28 chr8 123660138 123660522 + 1.5 NA Intergenic Intergenic -6529 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 197.5-6 chr10 70384010 70384321 + 1.5 NA Intergenic Intergenic -1515 NM_001278214 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 370.5-4 chr10 60074920 60075467 + 1.5 NA exon (NM_020987, exon 37 of 44) exon (NM_020987, exon 37 of 44) 65823 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 182-11 chr4 7377173 7377294 + 1.5 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) 57697 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin like 1 (gene/pseudogene) protein-coding 225.5-7 chr10 58514715 58514953 + 1.5 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 1962 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 212.5-18 chr2 61666444 61666700 + 1.5 NA Intergenic LTR16A|LTR|ERVL -128216 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 213.5-31 chr6 47124442 47124633 + 1.5 NA Intergenic L1MCa|LINE|L1 -82205 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 245-21 chr2 57855806 57856223 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -51637 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 202.5-3 chr1 147799011 147799286 + 1.5 NA Intergenic X6A_LINE|LINE|CR1 -25786 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 206-19 chr6 25714843 25715144 + 1.5 NA Intergenic L2b|LINE|L2 11569 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 273.5-32 chr8 101381438 101381816 + 1.5 NA Intergenic L1ME4a|LINE|L1 12734 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 401.5-8 chr10 76793166 76793595 + 1.5 NA Intergenic AluJr|SINE|Alu -94664 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 260.5-28 chr5 44965594 44965788 + 1.5 NA Intergenic Intergenic 156744 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 293-30 chr7 71996003 71996235 + 1.5 NA intron (NM_001363460, intron 4 of 5) L1MDa|LINE|L1 341272 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 138.5-8 chr16 78945217 78945401 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 655428 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 248.5-10 chr15 79464830 79465218 + 1.5 NA intron (NM_015206, intron 3 of 3) intron (NM_015206, intron 3 of 3) 32508 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 491-31 chr8 80930748 80931200 + 1.5 NA Intergenic Intergenic -56193 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 288 chr1 24536752 24537010 + 1.5 NA 3' UTR (NM_001251984, exon 4 of 4) 3' UTR (NM_001251984, exon 4 of 4) 19143 NR_109781 100506985 Hs.607088 NR_109781 NCMAP-DT - NCMAP divergent transcript ncRNA 383-37 chr8 49179457 49179850 + 1.5 NA Intergenic L1MA2|LINE|L1 107309 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 420-25 chr22 41488989 41489662 + 1.5 NA intron (NM_001098, intron 1 of 17) AluJo|SINE|Alu 20208 NM_001098 50 Hs.643610 NM_001098 ENSG00000100412 ACO2 ACONM|HEL-S-284|ICRD|OCA8|OPA9 aconitase 2 protein-coding 207.5-36 chr7 104675627 104675775 + 1.5 NA intron (NM_199000, intron 1 of 2) L2a|LINE|L2 128391 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 542-15 chr2 224704105 224704962 + 1.5 NA Intergenic Intergenic -119136 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 202-5 chr15 61583160 61583312 + 1.5 NA Intergenic L1PA15|LINE|L1 -146682 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 464.5-13 chr2 183815118 183815581 + 1.5 NA Intergenic Intergenic -563626 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 127.5-11 chr6 134978697 134978798 + 1.5 NA TTS (NR_037435) TTS (NR_037435) 685 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 133-7 chr9 86685919 86686102 + 1.5 NA Intergenic MIRb|SINE|MIR 261496 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 175-9 chr2 205818699 205818824 + 1.5 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 136260 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 406-9 chr18 30068422 30068875 + 1.5 NA Intergenic AluSx|SINE|Alu -230262 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 452-30 chr9 33299450 33299998 + 1.5 NA intron (NM_002504, intron 2 of 23) intron (NM_002504, intron 2 of 23) 9208 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 314.5-17 chr2 125018752 125019000 + 1.5 NA Intergenic L1M4b|LINE|L1 993589 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 276-28 chr20 46510375 46510573 + 1.5 NA intron (NM_001353826, intron 1 of 4) AluY|SINE|Alu 3098 NM_001353818 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 300.5-11 chr12 66464157 66464444 + 1.5 NA intron (NM_001366722, intron 8 of 24) intron (NM_001366722, intron 8 of 24) 161755 NM_033647 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 274.5-13 chr2 122738702 122738966 + 1.5 NA Intergenic MER21C|LTR|ERVL 334647 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 198.5-12 chr2 11290759 11291000 + 1.5 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 53757 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 180-15 chr8 89420606 89420790 + 1.5 NA Intergenic Intergenic 337013 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 385.5-23 chr2 47013662 47014076 + 1.5 NA intron (NM_001288951, intron 11 of 20) intron (NM_001288951, intron 11 of 20) -72014 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 171.5-6 chr12 87335412 87335584 + 1.5 NA Intergenic Intergenic 4759 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 148.5-28 chr9 101912366 101912508 + 1.5 NA Intergenic Intergenic -173857 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 321-34 chrX 8339040 8339357 + 1.5 NA Intergenic Intergenic -125632 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 309.5-11 chr14 70626812 70627137 + 1.5 NA intron (NR_110071, intron 2 of 2) L1M4|LINE|L1 14324 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 362.5-18 chr2 173546585 173546999 + 1.5 NA Intergenic HAL1|LINE|L1 191920 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 309-5 chr10 103921406 103921673 + 1.5 NA Intergenic MIR|SINE|MIR -3355 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 552.5-9 chr18 12298298 12298754 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -9143 NM_001303524 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 330.5-29 chr5 3559626 3560113 + 1.5 NA Intergenic Intergenic -23775 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 303-17 chr2 44085618 44085862 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -83063 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 143.5-18 chr4 118252319 118252436 + 1.5 NA intron (NM_004784, intron 12 of 13) intron (NM_004784, intron 12 of 13) -26385 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 264.5-14 chr17 33577205 33577415 + 1.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -43550 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 340.5-22 chr3 165313569 165313921 + 1.5 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 106785 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 269.5-50 chr8 19153489 19153700 + 1.5 NA Intergenic LTR8|LTR|ERV1 91928 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 479 chr1 105600374 105600733 + 1.5 NA intron (NR_125955, intron 3 of 3) Tigger6a|DNA|TcMar-Tigger 18382 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 358.5-16 chr20 11329424 11329722 + 1.5 NA Intergenic Intergenic -56190 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 324-33 chr5 22258228 22258480 + 1.5 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -44504 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 154.5-18 chr4 54065035 54065199 + 1.5 NA promoter-TSS (NM_012110) promoter-TSS (NM_012110) -512 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 327-3 chr1 174043166 174043610 + 1.5 NA Intergenic AluJo|SINE|Alu -50316 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 336-2 chr1 171262587 171262988 + 1.5 NA intron (NM_001282694, intron 2 of 7) L2c|LINE|L2 4864 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 197-20 chr4 74752586 74752717 + 1.5 NA intron (NM_001729, intron 3 of 5) AluSc|SINE|Alu 41872 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 170 chr1 47693365 47693568 + 1.5 NA Intergenic Intergenic -256149 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 331-41 chr8 137001160 137001588 + 1.5 NA Intergenic L1MDb|LINE|L1 412214 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 327.5-6 chr15 79564784 79565208 + 1.5 NA Intergenic Intergenic 132480 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 193.5-10 chr13 37032178 37032373 + 1.5 NA intron (NM_001014286, intron 10 of 25) L2a|LINE|L2 27212 NM_001278482 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 194-14 chr3 28840610 28840820 + 1.5 NA Intergenic Charlie30a|DNA|hAT-Charlie 265437 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 369-33 chr5 13434413 13434721 + 1.5 NA Intergenic Intergenic -401681 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 202.5-18 chr21 22994222 22994393 + 1.5 NA Intergenic L1PB1|LINE|L1 -84977 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 180.5-12 chr22 40002721 40002871 + 1.5 NA intron (NM_138435, intron 1 of 4) MIRc|SINE|MIR 7842 NM_138435 113828 Hs.26192 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 359.5-10 chr13 42498689 42499132 + 1.5 NA Intergenic Intergenic -63826 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 240.5-4 chr14 21050816 21051101 + 1.5 NA intron (NM_001282211, intron 1 of 14) L1MC4|LINE|L1 -6864 NM_138331 122665 Hs.553572 NM_138331 ENSG00000173431 RNASE8 RAE2 ribonuclease A family member 8 protein-coding 412.5-29 chr6 121902073 121902621 + 1.5 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 466701 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 499.5-13 chr3 8005804 8006208 + 1.5 NA intron (NR_110131, intron 1 of 3) MIRc|SINE|MIR 10301 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 404.5-8 chr17 69257115 69257466 + 1.5 NA intron (NM_018672, intron 27 of 37) AluSz|SINE|Alu -12475 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 362-3 chr1 198803090 198803371 + 1.5 NA Intergenic Intergenic 55752 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 356.5-28 chr3 9456724 9457194 + 1.5 NA intron (NM_001080517, intron 17 of 22) AluSc|SINE|Alu 59259 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 227-22 chr2 204471073 204471314 + 1.5 NA Intergenic Intergenic -74282 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 368-12 chr17 65666978 65667415 + 1.5 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -105548 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 264.5-13 chr17 10710511 10710775 + 1.5 NA TTS (NM_001359647) TTS (NM_001359647) 5939 NR_049723 100506898 Hs.674373 NR_049723 MAGOH2P MAGOH2 mago homolog 2, pseudogene pseudo 395.5-5 chr14 53885789 53886184 + 1.5 NA Intergenic Intergenic 62498 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 402-31 chr6 147497708 147498179 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -10747 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 125-3 chr5 42211309 42211453 + 1.5 NA Intergenic L1MA1|LINE|L1 -36036 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 361-26 chr6 4579240 4579709 + 1.5 NA Intergenic L1MC4|LINE|L1 -31091 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 165.5-2 chr1 201213726 201213940 + 1.5 NA intron (NM_001164586, intron 12 of 23) intron (NM_001164586, intron 12 of 23) 23008 NM_001164586 91156 Hs.519024 NM_178275 ENSG00000163395 IGFN1 EEF1A2BP1 immunoglobulin like and fibronectin type III domain containing 1 protein-coding 189.5-10 chr16 63127719 63127892 + 1.5 NA Intergenic L1MD|LINE|L1 -1091367 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 163.5-13 chr4 86920743 86920904 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 14027 NR_038841 100506746 Hs.657766 NR_038841 AFF1-AS1 - AFF1 antisense RNA 1 ncRNA 211-14 chr2 168204927 168205104 + 1.5 NA intron (NM_013233, intron 1 of 17) L1ME2z|LINE|L1 42580 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 253-2 chr1 242072335 242072581 + 1.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -73360 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 384-23 chr3 97389037 97389449 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -50364 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 155-8 chr4 86187010 86187207 + 1.5 NA intron (NM_001318069, intron 3 of 13) intron (NM_001318069, intron 3 of 13) 67302 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 185.5-20 chr2 237160283 237160478 + 1.5 NA Intergenic Intergenic 74491 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 160-10 chr2 168320986 168321224 + 1.5 NA Intergenic LTR48|LTR|ERV1 -73510 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 494.5-8 chr20 47262076 47262681 + 1.5 NA exon (NM_001281778, exon 12 of 22) exon (NM_001281778, exon 12 of 22) -56124 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 342.5-36 chr9 36695805 36696087 + 1.5 NA Intergenic (ATTTTA)n|Simple_repeat|Simple_repeat 123051 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 391.5-29 chr4 52079851 52080178 + 1.5 NA intron (NM_001346103, intron 5 of 8) intron (NM_001346103, intron 5 of 8) 28710 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 451-11 chr12 9810284 9810754 + 1.5 NA intron (NR_159359, intron 1 of 5) intron (NR_159359, intron 1 of 5) 10467 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 313-28 chr5 56684555 56684872 + 1.5 NA Intergenic Intergenic -78457 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 369.5-18 chr20 21010122 21010641 + 1.5 NA Intergenic MER21C|LTR|ERVL 95977 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 420-7 chr11 93591824 93592171 + 1.5 NA Intergenic AluSx|SINE|Alu -48606 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 177.5-19 chr3 138677332 138677498 + 1.5 NA intron (NM_006219, intron 19 of 23) intron (NM_006219, intron 19 of 23) 30206 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 661.5-7 chr3 9041161 9041804 + 1.5 NA intron (NM_014850, intron 10 of 21) MIR3|SINE|MIR -78010 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 326.5-19 chr2 39573231 39573655 + 1.5 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) -92055 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 147.5-6 chr14 50344383 50344485 + 1.5 NA intron (NM_001282236, intron 4 of 8) intron (NM_001282236, intron 4 of 8) 32110 NM_015684 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 220.5-29 chr6 21985205 21985375 + 1.5 NA intron (NR_015410, intron 6 of 11) intron (NR_015410, intron 6 of 11) 161903 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 186.5-12 chr17 69815510 69815664 + 1.5 NA intron (NR_109972, intron 3 of 4) L1MB1|LINE|L1 -146120 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 211-11 chr17 72802166 72802329 + 1.5 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -161775 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 215.5-24 chr2 216418120 216418284 + 1.5 NA intron (NM_001127207, intron 4 of 17) AluSx|SINE|Alu 5437 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 145-4 chr3 102065430 102065593 + 1.5 NA Intergenic Intergenic -98194 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 352.5-8 chr12 71625831 71626215 + 1.5 NA intron (NM_144982, intron 22 of 34) intron (NM_144982, intron 22 of 34) 37825 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 190-6 chr19 28636396 28636594 + 1.5 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 29807 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 327.5-21 chr5 95106486 95106873 + 1.5 NA intron (NM_024717, intron 1 of 22) L2a|LINE|L2 -24813 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 287-27 chr3 129039951 129040289 + 1.5 NA 3' UTR (NM_024768, exon 8 of 8) 3' UTR (NM_024768, exon 8 of 8) -20647 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 308.5-28 chr6 33948817 33949107 + 1.5 NA Intergenic Intergenic 49827 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 356-21 chr2 74638941 74639222 + 1.5 NA intron (NM_001321739, intron 2 of 10) intron (NM_001321739, intron 2 of 10) 8956 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 156.5-21 chr4 30857377 30857494 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 137066 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 291-21 chr5 82099731 82099954 + 1.5 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 127819 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 253.5-33 chr8 79567052 79567254 + 1.5 NA Intergenic Intergenic -43964 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 229.5-13 chr18 2812909 2813140 + 1.5 NA Intergenic L1M4b|LINE|L1 -33982 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 182.5-16 chr20 46074583 46074862 + 1.5 NA intron (NM_001348148, intron 1 of 6) intron (NM_001348148, intron 1 of 6) 15240 NM_001348148 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 230.5-36 chr4 106909764 106910015 + 1.5 NA Intergenic Intergenic 126424 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 212-16 chr3 90091317 90091537 + 1.5 NA Intergenic Intergenic 983806 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 161.5-21 chr7 122193919 122194095 + 1.5 NA Intergenic Intergenic -49758 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 365.5-18 chr5 161840098 161840559 + 1.5 NA Intergenic Intergenic -6863 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 184.5-10 chr16 55034744 55034990 + 1.5 NA Intergenic MER113|DNA|hAT-Charlie 103668 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 259-4 chr12 1498151 1498349 + 1.5 NA Intergenic MIR|SINE|MIR -2241 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 389 chr1 1006870 1007304 + 1.5 NA Intergenic Intergenic -6410 NM_005101 9636 Hs.458485 NM_005101 ENSG00000187608 ISG15 G1P2|IFI15|IMD38|IP17|UCRP|hUCRP ISG15 ubiquitin like modifier protein-coding 229-8 chr11 44776453 44776624 + 1.5 NA intron (NM_130783, intron 2 of 9) intron (NM_130783, intron 2 of 9) 49576 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 215.5-10 chr11 47855948 47856254 + 1.5 NA Intergenic AluSz|SINE|Alu -7557 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 553.5-13 chr5 26734155 26734774 + 1.5 NA Intergenic Intergenic 304122 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 568.5 chr11 84249936 84250450 + 1.5 NA intron (NM_001142700, intron 1 of 19) Charlie8|DNA|hAT-Charlie 23087 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 202 chr1 92362137 92362344 + 1.5 NA intron (NM_024813, intron 11 of 12) intron (NM_024813, intron 11 of 12) 63181 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 283.5-28 chr3 169081536 169081769 + 1.5 NA Intergenic MIRc|SINE|MIR 63871 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 333-5 chr12 126412391 126412776 + 1.5 NA intron (NR_147498, intron 2 of 3) (TGTG)n|Simple_repeat|Simple_repeat -13563 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 201-24 chr7 91243705 91243854 + 1.5 NA Intergenic MIRc|SINE|MIR -20654 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 250.5-15 chr17 19944075 19944284 + 1.5 NA intron (NM_007202, intron 5 of 14) L2|LINE|L2 33649 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 380.5-8 chr12 69576904 69577222 + 1.5 NA 3' UTR (NM_006654, exon 10 of 10) 3' UTR (NM_006654, exon 10 of 10) -7660 NR_037476 100500868 NR_037476 ENSG00000283677 MIR3913-2 mir-3913-2 microRNA 3913-2 ncRNA 331-29 chr2 99527034 99527531 + 1.5 NA Intergenic L1MC1|LINE|L1 -37265 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 202-29 chrX 91304843 91305012 + 1.5 NA Intergenic L1M1|LINE|L1 -129912 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 257-42 chr7 54196306 54196642 + 1.5 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -134223 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 304-26 chr3 94657687 94658174 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie -280333 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 226-7 chr12 116898406 116898679 + 1.5 NA Intergenic AluSq2|SINE|Alu -12408 NM_153348 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 271.5-26 chr3 106805109 106805395 + 1.5 NA Intergenic Intergenic 435386 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 291.5-26 chr9 129086057 129086302 + 1.5 NA exon (NM_020438, exon 6 of 8) exon (NM_020438, exon 6 of 8) 5068 NM_020438 57171 Hs.21701 NM_020438 ENSG00000167130 DOLPP1 LSFR2 dolichyldiphosphatase 1 protein-coding 359.5-21 chr2 54936465 54936823 + 1.5 NA intron (NM_001039753, intron 27 of 40) LTR106_Mam|LTR|LTR 73628 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 217.5-7 chr10 77047951 77048178 + 1.5 NA intron (NM_001271519, intron 14 of 28) FLAM_C|SINE|Alu -92767 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 259.5-7 chr12 2619805 2620109 + 1.5 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 52263 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 146-9 chr4 122895241 122895348 + 1.5 NA 3' UTR (NM_002006, exon 3 of 3) 3' UTR (NM_002006, exon 3 of 3) 27303 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 164-10 chr4 39252456 39252666 + 1.5 NA intron (NM_025132, intron 24 of 36) intron (NM_025132, intron 24 of 36) 70032 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 318.5-32 chr7 5759507 5760010 + 1.5 NA intron (NM_207111, intron 2 of 16) AluSg|SINE|Alu 21905 NM_207116 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 251.5-2 chr10 55584089 55584337 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -14829 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 397.5-13 chr2 52830319 52830731 + 1.5 NA Intergenic L2c|LINE|L2 -127910 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 306-23 chr5 18648997 18649428 + 1.5 NA Intergenic L1MA3|LINE|L1 841938 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 225.5-6 chr10 15902973 15903195 + 1.5 NA Intergenic Intergenic -42551 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 496-28 chr8 137792140 137792582 + 1.5 NA Intergenic Intergenic 291184 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 474-32 chr7 31298576 31298972 + 1.5 NA Intergenic L1M5|LINE|L1 41952 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 497.5-15 chr7 10081109 10081536 + 1.5 NA Intergenic Intergenic 447052 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 626-3 chr12 31584734 31585358 + 1.5 NA intron (NM_001308339, intron 1 of 22) MSTB1|LTR|ERVL-MaLR -4877 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 341.5-31 chr6 135776149 135776563 + 1.5 NA Intergenic L2a|LINE|L2 -75345 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 275-37 chr7 100811310 100811591 + 1.5 NA intron (NM_004444, intron 12 of 16) L2a|LINE|L2 -15419 NM_001363494 56996 Hs.521087 NM_020246 ENSG00000146828 SLC12A9 CCC6|CIP1|WO3.3|hCCC6 solute carrier family 12 member 9 protein-coding 372-40 chrX 27418478 27418967 + 1.5 NA Intergenic L1M1|LINE|L1 44619 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 230-33 chr8 78025840 78026095 + 1.5 NA Intergenic Intergenic -490373 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 266.5-23 chr4 44861941 44862278 + 1.5 NA Intergenic Intergenic -135475 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 250.5-10 chr12 20240934 20241283 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 -113207 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 262-2 chr1 164622511 164622828 + 1.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 62947 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 193-7 chr18 9901853 9902109 + 1.5 NA Intergenic AluSq2|SINE|Alu -12035 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 276-35 chr4 47797510 47797957 + 1.5 NA intron (NM_006587, intron 2 of 21) MIRc|SINE|MIR -33612 NR_125880 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 275-20 chr2 57997286 57997677 + 1.5 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -49161 NM_001130480 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 329-33 chr6 147283124 147283380 + 1.5 NA intron (NM_139244, intron 8 of 25) Charlie30a|DNA|hAT-Charlie -78638 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 264.5-20 chr2 5581852 5582073 + 1.5 NA Intergenic L1ME2|LINE|L1 109156 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 469-13 chr2 32563586 32564141 + 1.5 NA intron (NR_125793, intron 1 of 1) AluSq2|SINE|Alu 10955 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 262-21 chr2 175441889 175442185 + 1.5 NA Intergenic Intergenic -260327 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 382-33 chr3 157356751 157357123 + 1.5 NA intron (NM_024621, intron 9 of 13) intron (NM_024621, intron 9 of 13) -79913 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 314-17 chr2 167033187 167033592 + 1.5 NA intron (NM_152381, intron 2 of 10) L1PA7|LINE|L1 107566 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 122.5-15 chr21 30149028 30149146 + 1.5 NA Intergenic L3|LINE|CR1 17718 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 338-32 chr6 160365832 160366271 + 1.5 NA intron (NM_021977, intron 1 of 10) THE1C|LTR|ERVL-MaLR 17673 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 277.5-10 chr13 113272204 113272496 + 1.5 NA Intergenic Intergenic 9430 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 241.5-16 chr16 62844767 62845072 + 1.5 NA Intergenic Intergenic -808481 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 163.5-4 chr14 62971924 62972085 + 1.5 NA intron (NM_139318, intron 6 of 10) L1MC1|LINE|L1 73454 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 476-33 chr9 28416031 28416559 + 1.5 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 303010 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 267-5 chr11 66629867 66630190 + 1.5 NA TTS (NM_001198837) TTS (NM_001198837) -8589 NM_001198843 5936 Hs.523822 NM_002896 ENSG00000173933 RBM4 LARK|RBM4A|ZCCHC21|ZCRB3A RNA binding motif protein 4 protein-coding 356.5-6 chr10 119213592 119214139 + 1.5 NA intron (NM_005308, intron 1 of 15) intron (NM_005308, intron 1 of 15) 6294 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 188-15 chr5 55685311 55685499 + 1.5 NA intron (NM_001349385, intron 3 of 14) L1MB7|LINE|L1 7648 NM_001258287 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 125.5 chr10 83896200 83896393 + 1.5 NA Intergenic Intergenic -219207 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 364.5-9 chr15 74492019 74492356 + 1.5 NA Intergenic L1MC4|LINE|L1 30922 NR_038449 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 220-23 chr4 58604493 58604753 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -68295 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 221.5-21 chr5 94083444 94083613 + 1.5 NA intron (NM_032042, intron 1 of 10) L1ME3F|LINE|L1 28135 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 349.5-6 chr11 72736183 72736629 + 1.5 NA intron (NM_001040118, intron 1 of 34) AluJb|SINE|Alu -14048 NM_015242 116985 Hs.503165 NM_015242 ENSG00000186635 ARAP1 CENTD2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding 415-3 chr1 246222507 246222790 + 1.5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 194764 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 239-19 chr22 21066053 21066293 + 1.5 NA Intergenic Intergenic 20227 NR_110991 400891 Hs.291198 NM_001013675 ENSG00000187905 LRRC74B - leucine rich repeat containing 74B protein-coding 144-7 chr20 63084368 63084474 + 1.5 NA non-coding (NR_033370, exon 4 of 5) non-coding (NR_033370, exon 4 of 5) -16871 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 230.5-30 chr2 168758771 168758924 + 1.5 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 27582 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 466.5-28 chr9 136274265 136274632 + 1.5 NA Intergenic Intergenic -28607 NM_181701 169714 Hs.144073 NM_181701 ENSG00000165661 QSOX2 QSCN6L1|SOXN quiescin sulfhydryl oxidase 2 protein-coding 175.5-20 chr3 28128882 28129080 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -112638 NM_182523 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 183-13 chr2 205474662 205474810 + 1.5 NA intron (NM_057177, intron 19 of 21) L1ME4a|LINE|L1 -207764 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 244-15 chr2 32640931 32641174 + 1.5 NA intron (NM_017735, intron 4 of 19) intron (NM_017735, intron 4 of 19) 5797 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 242-31 chr8 70189955 70190232 + 1.5 NA intron (NM_001321711, intron 4 of 21) intron (NM_001321711, intron 4 of 21) -118841 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 494.5-15 chr8 78518268 78518672 + 1.5 NA intron (NM_181839, intron 1 of 2) (AAT)n|Simple_repeat|Simple_repeat 2130 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 389.5-19 chr3 108076919 108077409 + 1.5 NA intron (NM_198793, intron 2 of 8) intron (NM_198793, intron 2 of 8) 13924 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 219.5-40 chr8 97069694 97069840 + 1.5 NA intron (NM_016134, intron 7 of 7) L2c|LINE|L2 208161 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 466.5-3 chr11 100881084 100881524 + 1.5 NA intron (NM_001367945, intron 6 of 25) L1PB1|LINE|L1 -52970 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 242.5-33 chr5 62486330 62486617 + 1.5 NA intron (NM_016338, intron 12 of 29) intron (NM_016338, intron 12 of 29) 67589 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 261-19 chr5 7448122 7448338 + 1.5 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 52092 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 521-24 chr9 98715216 98715741 + 1.5 NA Intergenic L3|LINE|CR1 -6543 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 164.5-31 chr8 140396015 140396139 + 1.5 NA intron (NM_001160372, intron 7 of 22) intron (NM_001160372, intron 7 of 22) 61667 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 243.5-7 chr10 111034298 111034624 + 1.5 NA Intergenic L1ME3A|LINE|L1 -42568 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 229.5-18 chr2 118244982 118245245 + 1.5 NA Intergenic Intergenic -58727 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 216.5-29 chr4 75668992 75669152 + 1.5 NA intron (NM_203504, intron 1 of 10) intron (NM_203504, intron 1 of 10) 4087 NM_012297 9908 Hs.303676 NM_012297 ENSG00000138757 G3BP2 - G3BP stress granule assembly factor 2 protein-coding 211-19 chr4 18292394 18292663 + 1.5 NA Intergenic AluSz|SINE|Alu -270653 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 267-50 chr8 136787224 136787480 + 1.5 NA intron (NR_147196, intron 2 of 5) L1ME3E|LINE|L1 256554 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 242.5-12 chr2 67812902 67813076 + 1.5 NA intron (NR_110271, intron 2 of 2) L1PB1|LINE|L1 12573 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 225-28 chr6 40457979 40458196 + 1.5 NA intron (NM_020737, intron 1 of 2) MLT1I|LTR|ERVL-MaLR 79750 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 363.5-31 chr7 107795091 107795406 + 1.5 NA intron (NM_000111, intron 1 of 20) MIRb|SINE|MIR 7985 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 186.5-6 chr10 71452680 71452864 + 1.5 NA intron (NM_052836, intron 3 of 12) MIRb|SINE|MIR 55838 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 249-7 chr11 74340433 74340732 + 1.5 NA intron (NM_173582, intron 12 of 13) intron (NM_173582, intron 12 of 13) -28942 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 232.5-6 chr10 55110250 55110448 + 1.5 NA intron (NM_001354404, intron 3 of 34) MIRb|SINE|MIR -309058 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 229-35 chr9 91189756 91189948 + 1.5 NA Intergenic Intergenic 70790 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 249-26 chr3 99773472 99773723 + 1.5 NA intron (NM_001850, intron 3 of 4) intron (NM_001850, intron 3 of 4) -44265 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 475-20 chr22 27571077 27571636 + 1.5 NA Intergenic L2c|LINE|L2 230400 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 243-14 chr17 33075248 33075443 + 1.5 NA intron (NM_183377, intron 3 of 9) THE1B|LTR|ERVL-MaLR 82494 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 338-15 chr2 44427068 44427448 + 1.5 NA intron (NM_024766, intron 3 of 10) L1P4|LINE|L1 65311 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 286.5-28 chr6 67524370 67524617 + 1.5 NA Intergenic Intergenic -530858 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 161-8 chr21 28999774 28999964 + 1.5 NA Intergenic L2|LINE|L2 -6992 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 126.5-2 chr10 42473981 42474161 + 1.5 NA Intergenic Intergenic -1420 NR_026827 84856 Hs.55977 NM_032770 ENSG00000185904 LINC00839 - long intergenic non-protein coding RNA 839 ncRNA 186-8 chr17 8454656 8454853 + 1.5 NA intron (NM_030808, intron 6 of 8) intron (NM_030808, intron 6 of 8) 18870 NM_030808 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 384.5-10 chr17 69601753 69602092 + 1.5 NA intron (NR_109972, intron 2 of 4) AluSz|SINE|Alu 7935 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 285-17 chr18 76953544 76953758 + 1.5 NA intron (NM_001306089, intron 27 of 30) intron (NM_001306089, intron 27 of 30) 63404 NM_001025081 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 313.5-25 chr22 44561763 44562005 + 1.5 NA Intergenic AluJb|SINE|Alu -7456 NR_028409 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 235-40 chr9 94160021 94160353 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -15770 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 170.5-13 chr19 30292381 30292625 + 1.5 NA Intergenic AluJo|SINE|Alu -79881 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 329-6 chr11 112177558 112177993 + 1.5 NA intron (NM_001256400, intron 1 of 10) MIR|SINE|MIR 1409 NM_001037290 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 332.5-5 chr11 14493620 14493994 + 1.5 NA exon (NM_001144062, exon 4 of 22) exon (NM_001144062, exon 4 of 22) 6051 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 264-17 chr2 159400156 159400356 + 1.5 NA intron (NM_001329858, intron 16 of 36) intron (NM_001329858, intron 16 of 36) -113553 NM_001330280 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 172-5 chr12 109580935 109581098 + 1.5 NA intron (NM_001301182, intron 4 of 9) L2b|LINE|L2 7222 NM_001301182 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 240.5-15 chr4 35335603 35335822 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR 908227 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 205-13 chr15 79240883 79241049 + 1.5 NA intron (NR_038997, intron 1 of 1) L2c|LINE|L2 31178 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 313.5-7 chr11 78009039 78009457 + 1.5 NA Intergenic L1MEc|LINE|L1 14028 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 302-8 chr11 30216897 30217159 + 1.5 NA Intergenic Intergenic -13986 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 193-17 chr3 123140853 123141114 + 1.5 NA intron (NM_006810, intron 11 of 16) intron (NM_006810, intron 11 of 16) -20811 NR_106960 102465667 NR_106960 ENSG00000284421 MIR7110 hsa-mir-7110 microRNA 7110 ncRNA 216-26 chr8 127359331 127359551 + 1.5 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -40958 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 414.5-23 chr6 53070567 53070958 + 1.5 NA promoter-TSS (NM_012347) promoter-TSS (NM_012347) -211 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 306.5-9 chr11 38475402 38475714 + 1.5 NA Intergenic Intergenic 170798 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 176-5 chr15 49455059 49455278 + 1.5 NA intron (NM_002009, intron 2 of 3) MER5A1|DNA|hAT-Charlie 31926 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 168-6 chr16 81939864 81940069 + 1.5 NA exon (NM_002661, exon 30 of 33) exon (NM_002661, exon 30 of 33) 71504 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 373-16 chr14 55630055 55630481 + 1.5 NA intron (NR_073129, intron 8 of 45) intron (NR_073129, intron 8 of 45) 50061 NM_001079521 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 127.5-10 chr6 100891849 100891970 + 1.5 NA Intergenic Intergenic -10537 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 418.5-14 chr19 16109672 16109951 + 1.5 NA Intergenic AluSx|SINE|Alu -2078 NM_005370 4218 Hs.642874 NM_005370 ENSG00000167461 RAB8A MEL|RAB8 RAB8A, member RAS oncogene family protein-coding 162.5-10 chr2 79008387 79008613 + 1.5 NA Intergenic Intergenic -17202 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 287.5-10 chr17 54363549 54363792 + 1.5 NA Intergenic Intergenic -537021 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 287.5-16 chr2 193452423 193452753 + 1.5 NA Intergenic Intergenic 702743 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 454.5-28 chr7 88125845 88126298 + 1.5 NA intron (NM_001324421, intron 8 of 28) intron (NM_001324421, intron 8 of 28) -90589 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 582.5-2 chr1 216240959 216241629 + 1.5 NA intron (NM_206933, intron 13 of 71) HAL1|LINE|L1 168829 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 390-28 chr7 7850094 7850552 + 1.5 NA intron (NM_001302350, intron 4 of 4) Charlie2b|DNA|hAT-Charlie 118429 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 489-6 chr11 29152104 29152605 + 1.5 NA Intergenic L1MD2|LINE|L1 -442059 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 362-2 chr1 125021150 125021451 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 3502188 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 410.5-20 chr7 51349728 51350098 + 1.5 NA Intergenic Intergenic -33052 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 231.5-3 chr10 104057308 104057462 + 1.5 NA intron (NM_000494, intron 16 of 55) MIRb|SINE|MIR -9199 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 296-5 chr10 94015736 94016035 + 1.5 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 21954 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 182.5-24 chr5 21887200 21887356 + 1.5 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) 2569 NM_001364109 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 292-8 chr15 47718932 47719453 + 1.5 NA intron (NM_153618, intron 1 of 18) intron (NM_153618, intron 1 of 18) 703 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 392-40 chrX 87762248 87762617 + 1.5 NA Intergenic L1PA16|LINE|L1 244630 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 295-15 chr17 35173001 35173353 + 1.5 NA intron (NM_001033576, intron 13 of 19) AluSz|SINE|Alu 21216 NM_152462 146861 Hs.514814 NM_152462 ENSG00000164729 SLC35G3 AMAC1|TMEM21A solute carrier family 35 member G3 protein-coding 453-7 chr15 64227991 64228536 + 1.5 NA intron (NM_001329607, intron 4 of 11) intron (NM_001329607, intron 4 of 11) -65108 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 279.5-13 chr5 34839869 34840223 + 1.5 NA intron (NM_001317949, intron 1 of 10) AluSx|SINE|Alu 665 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 134.5-4 chr10 37265622 37265731 + 1.5 NA Intergenic Intergenic -43510 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 195-2 chr1 79777551 79777716 + 1.5 NA Intergenic CR1_Mam|LINE|CR1 -758122 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 348-8 chr12 6938712 6939023 + 1.5 NA exon (NM_001007026, exon 7 of 10) exon (NM_001007026, exon 7 of 10) -4571 NM_001301836 113246 Hs.405913 NM_138425 ENSG00000111678 C12orf57 C10|GRCC10 chromosome 12 open reading frame 57 protein-coding 308-30 chr6 75131826 75132105 + 1.5 NA exon (NM_004370, exon 35 of 66) exon (NM_004370, exon 35 of 66) -3183 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 428.5-9 chr12 87378981 87379534 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 48518 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 260-31 chr6 144379018 144379263 + 1.5 NA intron (NM_007124, intron 1 of 73) L2b|LINE|L2 -26515 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 179-14 chr22 28600209 28600377 + 1.5 NA intron (NM_001145418, intron 2 of 22) AluJo|SINE|Alu 79572 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 248-18 chr5 9890498 9890791 + 1.5 NA intron (NR_027112, intron 2 of 12) intron (NR_027112, intron 2 of 12) 13180 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 221.5-18 chr4 123390821 123391005 + 1.5 NA Intergenic Intergenic -5882 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 359-2 chr1 61420625 61421189 + 1.5 NA intron (NM_005595, intron 9 of 9) intron (NM_005595, intron 9 of 9) -167389 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 181-16 chr7 6577435 6577574 + 1.5 NA promoter-TSS (NM_001371292) promoter-TSS (NM_001371292) 50 NM_001371296 316.5-9 chr18 9492772 9493122 + 1.5 NA intron (NM_006788, intron 1 of 9) L1MC1|LINE|L1 17434 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 192-14 chr2 136045467 136045714 + 1.5 NA Intergenic Intergenic -59906 NM_001293312 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 440-5 chr10 52232445 52232751 + 1.5 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 81530 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 546.5-9 chr6 102263600 102264072 + 1.5 NA Intergenic Intergenic 864851 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 498.5-10 chr22 25460004 25460530 + 1.5 NA intron (NR_033734, intron 4 of 4) L1M5|LINE|L1 4621 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 220.5-27 chr5 60307130 60307484 + 1.5 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 65356 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 174-6 chr12 53859185 53859314 + 1.5 NA Intergenic L1MB8|LINE|L1 -79582 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 275-44 chrX 55325472 55325783 + 1.5 NA Intergenic L1MD1|LINE|L1 45539 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 295.5-30 chr8 31836908 31837277 + 1.5 NA intron (NM_013962, intron 1 of 4) L1ME4b|LINE|L1 -188644 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 205-23 chr5 122032047 122032362 + 1.5 NA Intergenic L1MC4a|LINE|L1 44970 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 179.5-12 chr3 62038523 62038653 + 1.5 NA intron (NM_002841, intron 4 of 29) AluJb|SINE|Alu 280359 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 229.5-16 chr2 23028708 23028918 + 1.5 NA Intergenic Tigger4b|DNA|TcMar-Tigger -356366 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 229.5-6 chr11 358674 358926 + 1.5 NA Intergenic L1MC3|LINE|L1 -10699 NM_178537 338707 Hs.148074 NM_178537 ENSG00000182272 B4GALNT4 - beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding 141.5-5 chr10 124249477 124249586 + 1.5 NA Intergenic Intergenic -155933 NM_001270764 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 487.5-7 chr10 61120490 61121073 + 1.5 NA Intergenic Intergenic 104506 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 234.5-2 chr1 98364434 98364685 + 1.5 NA Intergenic Intergenic 153848 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 259.5-15 chr17 63796512 63796748 + 1.5 NA intron (NM_203499, intron 3 of 17) intron (NM_203499, intron 3 of 17) 22441 NM_007372 11325 Hs.702010 NM_007372 ENSG00000198231 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD-box helicase 42 protein-coding 383-19 chr22 19833215 19833529 + 1.5 NA intron (NM_053004, intron 2 of 7) L1MEf|LINE|L1 21502 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 255-16 chr21 17043475 17043821 + 1.5 NA Intergenic Intergenic -395242 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 200-23 chr9 35522382 35522626 + 1.5 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -16128 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 177.5-24 chr5 88583415 88583583 + 1.5 NA intron (NR_152235, intron 2 of 3) MLT1H2|LTR|ERVL-MaLR 83440 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 575-17 chr8 132873881 132874393 + 1.5 NA intron (NM_003235, intron 5 of 47) AluSx4|SINE|Alu 7179 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 501.5-3 chr1 53452523 53452872 + 1.5 NA Intergenic Intergenic -6702 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 149-5 chr2 49459498 49459612 + 1.5 NA Intergenic Intergenic -305028 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 327.5-27 chr8 28326344 28326773 + 1.5 NA intron (NM_006228, intron 1 of 3) MER5A1|DNA|hAT-Charlie 9290 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 269.5-14 chr14 50961383 50961676 + 1.5 NA Intergenic Intergenic -17046 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 319.5-26 chr4 169925762 169926216 + 1.5 NA intron (NR_037878, intron 3 of 4) MLT1O|LTR|ERVL-MaLR 49913 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 340-20 chr2 7285662 7286041 + 1.5 NA Intergenic AluSx3|SINE|Alu -135410 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 251-22 chr3 19900969 19901324 + 1.5 NA intron (NM_001330688, intron 8 of 14) L1ME4c|LINE|L1 33071 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 313.5-46 chr9 30539080 30539303 + 1.5 NA Intergenic L1MA5|LINE|L1 -130737 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 167-7 chr2 81791912 81792082 + 1.5 NA Intergenic Intergenic -325051 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 288-32 chr5 11441819 11442206 + 1.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 146905 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 390.5-2 chr1 236203699 236204055 + 1.5 NA intron (NM_003272, intron 5 of 6) L1M2|LINE|L1 61338 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 182.5-18 chr3 4140831 4141026 + 1.5 NA Intergenic Intergenic -162376 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 205.5-10 chr19 28952793 28953078 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -12196 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 384.5-23 chr7 38559338 38559793 + 1.5 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 71808 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 203-26 chr7 129095541 129095701 + 1.5 NA Intergenic AluJo|SINE|Alu -30650 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 342.5-8 chr12 115760978 115761416 + 1.5 NA Intergenic MIRc|SINE|MIR 387457 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 446.5-9 chr2 102796978 102797522 + 1.5 NA intron (NM_001321346, intron 3 of 3) intron (NM_001321346, intron 3 of 3) 35219 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 320.5-14 chr2 21014979 21015251 + 1.5 NA exon (NM_000384, exon 23 of 29) exon (NM_000384, exon 23 of 29) 28958 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 411.5-7 chr11 110963352 110963816 + 1.5 NA Intergenic Intergenic 133734 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 229.5-45 chrX 126626787 126626965 + 1.5 NA Intergenic L1MC2|LINE|L1 -74062 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 276-3 chr1 64602053 64602261 + 1.5 NA intron (NM_020925, intron 3 of 26) intron (NM_020925, intron 3 of 26) 22310 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 174-11 chr2 106365815 106365952 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -3862 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 539.5-12 chr18 20983464 20983936 + 1.5 NA intron (NM_005406, intron 20 of 32) intron (NM_005406, intron 20 of 32) 128113 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 220.5-10 chr12 120827026 120827196 + 1.5 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 77247 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 182.5-13 chr2 230090386 230090569 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR -21553 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 335-17 chr16 10392165 10392467 + 1.5 NA intron (NM_024997, intron 1 of 11) AluSq2|SINE|Alu 6255 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 240.5-16 chr4 51848455 51848851 + 1.5 NA intron (NM_001287757, intron 2 of 11) intron (NM_001287757, intron 2 of 11) 5074 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 494.5-10 chr5 174569889 174570481 + 1.5 NA Intergenic Intergenic -154397 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 330-38 chr6 122516963 122517426 + 1.5 NA intron (NM_001270393, intron 3 of 7) L1ME3A|LINE|L1 45277 NM_001270394 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 407-28 chr7 37819972 37820521 + 1.5 NA Intergenic L1M7|LINE|L1 -28351 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 366.5-27 chr6 55561927 55562341 + 1.5 NA intron (NR_109867, intron 1 of 3) intron (NR_109867, intron 1 of 3) 17080 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 345.5-29 chr6 129467149 129467490 + 1.5 NA intron (NM_000426, intron 51 of 64) L1PA17|LINE|L1 242858 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 334.5-22 chr4 19215010 19215315 + 1.5 NA Intergenic Intergenic -1036743 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 744.5 chr14 83264807 83265673 + 1.5 NA Intergenic Intergenic 622608 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 314-10 chr14 72641766 72642134 + 1.5 NA intron (NM_001280542, intron 8 of 10) MLT1F1|LTR|ERVL-MaLR 125130 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 442-24 chr9 28057239 28057678 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -483592 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 359.5-11 chr14 29179595 29179834 + 1.5 NA Intergenic Intergenic -393927 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 497.5-5 chr11 32305265 32305881 + 1.5 NA Intergenic L2c|LINE|L2 94827 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 372-2 chr1 116398514 116398922 + 1.5 NA TTS (NR_027645) TTS (NR_027645) 15348 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 323-25 chr6 168974094 168974510 + 1.5 NA Intergenic Intergenic -9920 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 151-8 chr21 21459929 21460050 + 1.5 NA intron (NM_001352592, intron 13 of 18) L1MA9|LINE|L1 277330 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 451-2 chr1 186128578 186128968 + 1.5 NA intron (NM_031935, intron 83 of 106) intron (NM_031935, intron 83 of 106) -167500 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 385.5-34 chr3 96337816 96338238 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -21937 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 431.5-4 chr10 96078273 96078916 + 1.5 NA intron (NR_134322, intron 2 of 3) L2c|LINE|L2 11641 NR_134322 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 311-8 chr10 91969422 91969664 + 1.5 NA intron (NM_003972, intron 14 of 37) intron (NM_003972, intron 14 of 37) 45773 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 576-14 chr3 180891104 180891709 + 1.5 NA Intergenic AluJr4|SINE|Alu -21228 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 306-36 chr9 21746409 21746687 + 1.5 NA Intergenic Intergenic -56088 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 419-16 chr2 19232750 19233299 + 1.5 NA Intergenic AluSq2|SINE|Alu -115405 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 452.5-21 chr8 81861297 81861752 + 1.5 NA Intergenic Intergenic -19238 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 474-26 chr5 90237504 90238090 + 1.5 NA intron (NR_120601, intron 3 of 5) LTR78|LTR|ERV1 52274 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 200-20 chr7 29850733 29850967 + 1.5 NA intron (NM_001080529, intron 2 of 8) MIRb|SINE|MIR 44296 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 357.5-3 chr11 78067617 78067915 + 1.5 NA TTS (NM_004549) TTS (NM_004549) 3905 NM_003251 7069 Hs.591969 NM_003251 ENSG00000151365 THRSP LPGP1|Lpgp|S14|SPOT14|THRP thyroid hormone responsive protein-coding 270-23 chr5 1740436 1740664 + 1.5 NA Intergenic L1MC1|LINE|L1 -31682 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 315-20 chr21 19141741 19142079 + 1.5 NA Intergenic Intergenic -382098 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 142-2 chr10 100444274 100444398 + 1.5 NA Intergenic AluJb|SINE|Alu -18673 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 621-12 chr3 80331917 80332356 + 1.5 NA Intergenic L1MC3|LINE|L1 -432761 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 402.5-23 chr5 12620355 12620785 + 1.5 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 45713 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 230.5-32 chr3 65874895 65875114 + 1.5 NA non-coding (NR_145422, exon 3 of 3) non-coding (NR_145422, exon 3 of 3) -18812 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 286.5-25 chr5 91477802 91478197 + 1.5 NA Intergenic L1ME3B|LINE|L1 -94682 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 186-23 chr5 17829935 17830088 + 1.5 NA intron (NR_134286, intron 2 of 7) intron (NR_134286, intron 2 of 7) 22737 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 176-14 chr9 82383994 82384200 + 1.5 NA Intergenic Intergenic 395325 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 235-11 chr14 72960042 72960249 + 1.5 NA TTS (NR_147990) TTS (NR_147990) 26811 NM_001281735 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 393.5-12 chr19 44520309 44520731 + 1.5 NA exon (NM_001102598, exon 5 of 10) exon (NM_001102598, exon 5 of 10) 9155 NM_001102599 125931 Hs.689632 NM_198444 ENSG00000273777 CEACAM20 UNQ9366 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding 262-22 chr3 61198271 61198509 + 1.5 NA intron (NM_001320900, intron 2 of 9) intron (NM_001320900, intron 2 of 9) 53062 NM_001354589 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 311.5-18 chr12 52778747 52778985 + 1.5 NA Intergenic Intergenic -1521 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 408-13 chr14 39365326 39365667 + 1.5 NA intron (NM_001354155, intron 22 of 22) L1MA4A|LINE|L1 67004 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 181.5-34 chrX 78605392 78605584 + 1.5 NA Intergenic L1MA4|LINE|L1 53840 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 261-27 chr7 14154250 14154633 + 1.5 NA intron (NM_001350717, intron 24 of 24) MIR|SINE|MIR -163016 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 231-21 chr5 25600722 25600915 + 1.5 NA Intergenic LTR41B|LTR|ERVL 409865 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 262.5-23 chr6 56611193 56611440 + 1.5 NA intron (NM_001144770, intron 35 of 94) MIRc|SINE|MIR 31573 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 249.5-9 chr14 57918819 57919212 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -52923 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 612-7 chr12 133026967 133027622 + 1.5 NA TTS (NM_001330513) TTS (NM_001330513) 9928 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 238-22 chr2 37604759 37605024 + 1.5 NA Intergenic L1MA9|LINE|L1 67308 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 414-14 chr2 34966864 34967421 + 1.5 NA Intergenic L1ME1|LINE|L1 289585 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 220-33 chr8 139877593 139877792 + 1.5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -174569 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 268.5-19 chr3 35195960 35196180 + 1.5 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 197953 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 300-16 chr3 138766486 138766761 + 1.5 NA intron (NM_006219, intron 2 of 23) intron (NM_006219, intron 2 of 23) -59002 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 397-32 chr8 49775959 49776504 + 1.5 NA Intergenic L1MB8|LINE|L1 -133565 NM_001287813 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 159-3 chr4 60986697 60986881 + 1.5 NA Intergenic HAL1|LINE|L1 64170 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 156-16 chr5 103968061 103968223 + 1.5 NA Intergenic L1MB1|LINE|L1 -405353 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 431.5-17 chr6 67422087 67422521 + 1.5 NA Intergenic Intergenic -633047 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 257.5-37 chr6 46246719 46247091 + 1.5 NA exon (NM_001251974, exon 4 of 5) exon (NM_001251974, exon 4 of 5) -29419 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 122 chr18 62205224 62205373 + 1.5 NA intron (NR_144409, intron 1 of 31) L1ME2z|LINE|L1 18043 NR_144403 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 220-4 chr10 85441296 85441490 + 1.5 NA intron (NR_120670, intron 1 of 2) intron (NR_120670, intron 1 of 2) -8199 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 132.5-24 chrX 96735350 96735438 + 1.5 NA intron (NM_007309, intron 1 of 26) intron (NM_007309, intron 1 of 26) 50552 NM_006729 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 449.5-6 chr16 34593260 34593823 + 1.5 NA Intergenic Intergenic -212061 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 352.5-3 chr1 158987986 158988457 + 1.5 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -11755 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 315.5-35 chr6 98772045 98772400 + 1.5 NA Intergenic Intergenic 59478 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 257.5-16 chr16 11564860 11565186 + 1.5 NA intron (NR_024320, intron 1 of 3) AluSz6|SINE|Alu 21350 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 252.5-23 chr5 164102334 164102590 + 1.5 NA Intergenic Intergenic 364940 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 480.5-10 chr6 157532087 157532639 + 1.5 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) 3231 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 268-21 chr6 24999289 24999566 + 1.5 NA intron (NM_001286446, intron 1 of 13) MER41E|LTR|ERV1 42861 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 275-14 chr14 91046104 91046365 + 1.5 NA intron (NM_182398, intron 1 of 12) L2b|LINE|L2 13890 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 402.5-3 chr1 196144887 196145236 + 1.5 NA Intergenic L1MD3|LINE|L1 -56346 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 217-10 chr16 85061797 85061991 + 1.5 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) -1318 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 231.5-38 chr9 74289187 74289506 + 1.5 NA Intergenic Intergenic -82185 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 253.5-27 chr5 44280670 44280845 + 1.5 NA Intergenic Intergenic -107975 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 345-31 chr5 29427071 29427466 + 1.5 NA Intergenic AluSq|SINE|Alu -31292 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 299.5-13 chr15 69050502 69050866 + 1.5 NA intron (NM_024505, intron 14 of 15) AluSx1|SINE|Alu -30166 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 338-9 chr13 84530100 84530450 + 1.5 NA intron (NR_046871, intron 3 of 6) MLT1J|LTR|ERVL-MaLR -253379 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 541-19 chr6 157637565 157638242 + 1.5 NA intron (NM_024630, intron 5 of 8) intron (NM_024630, intron 5 of 8) 108771 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 265.5-11 chr12 94482737 94483001 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -22415 NM_001368037 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 588-13 chr13 110556591 110557135 + 1.5 NA intron (NM_017817, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 4859 NM_017817 55647 Hs.743563 NM_017817 ENSG00000139832 RAB20 - RAB20, member RAS oncogene family protein-coding 157-4 chr15 85509009 85509130 + 1.5 NA intron (NM_007200, intron 2 of 36) L2a|LINE|L2 -110881 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 253.5-23 chr22 44677261 44677525 + 1.5 NA intron (NM_001017530, intron 1 of 7) intron (NM_001017530, intron 1 of 7) 308 NM_015366 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 165.5-22 chr7 133387711 133387920 + 1.5 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 96934 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 236.5-17 chr16 24435441 24435616 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -104038 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 439.5-3 chr1 152800363 152800751 + 1.5 NA Intergenic L1M2|LINE|L1 3836 NM_178352 353134 Hs.490235 NM_178352 ENSG00000172155 LCE1D LEP4 late cornified envelope 1D protein-coding 318-19 chr2 17598837 17599109 + 1.5 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 58277 NM_003385 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 261.5-33 chr8 82789109 82789393 + 1.5 NA Intergenic Intergenic -122853 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 375-37 chr8 139194857 139195311 + 1.5 NA Intergenic Intergenic -281043 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 509.5-9 chr3 94951486 94951945 + 1.5 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 13452 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 505.5-13 chr3 177112299 177112712 + 1.5 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 83973 NM_001321195 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 406.5-17 chr20 48601010 48601531 + 1.5 NA Intergenic Intergenic 226729 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 200-21 chr8 128196777 128196926 + 1.5 NA Intergenic L2a|LINE|L2 46735 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 354-3 chr1 52738165 52738489 + 1.5 NA intron (NM_024646, intron 1 of 13) AluSz|SINE|Alu 11874 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 185.5-5 chr12 64110592 64110738 + 1.5 NA intron (NM_001346201, intron 16 of 21) intron (NM_001346201, intron 16 of 21) 111631 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 530-19 chr4 110299426 110299833 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -101014 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 376.5-32 chr9 108648557 108649077 + 1.5 NA Intergenic Intergenic 207169 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 351.5-10 chr2 13605782 13606225 + 1.5 NA Intergenic Intergenic -598990 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 327.5-30 chr9 1290810 1291098 + 1.5 NA Intergenic Intergenic 239467 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 238-36 chr8 77692972 77693199 + 1.5 NA Intergenic Intergenic 242388 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 243.5-2 chr1 178117877 178118160 + 1.5 NA intron (NM_170692, intron 1 of 17) AluSq2|SINE|Alu 23914 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 222.5-14 chr2 171108449 171108639 + 1.5 NA intron (NM_012290, intron 2 of 20) L1MEh|LINE|L1 -41571 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 147 chr1 6696035 6696196 + 1.5 NA intron (NM_018198, intron 1 of 15) intron (NM_018198, intron 1 of 15) 5701 NM_018198 55735 Hs.462640 NM_018198 ENSG00000007923 DNAJC11 dJ126A5.1 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 360.5-5 chr14 65082928 65083250 + 1.5 NA TTS (NM_145114) TTS (NM_145114) -6829 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 333.5-8 chr17 63004528 63004961 + 1.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 38509 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 500-16 chr9 99886732 99887215 + 1.5 NA intron (NR_038853, intron 2 of 2) intron (NR_038853, intron 2 of 2) 19628 NR_038853 441461 Hs.163155 NR_038853 ENSG00000255145 STX17-AS1 - STX17 antisense RNA 1 ncRNA 280-19 chr18 11211207 11211510 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -62596 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 310.5-14 chr14 73911896 73912166 + 1.5 NA intron (NR_040251, intron 8 of 11) L1MC5a|LINE|L1 25172 NM_001242924 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 221-16 chr3 95178079 95178396 + 1.5 NA Intergenic L1M5|LINE|L1 239974 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 204.5 chr1 10552808 10553087 + 1.5 NA intron (NM_004565, intron 3 of 8) intron (NM_004565, intron 3 of 8) 77997 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 392-38 chr8 113788411 113788714 + 1.5 NA Intergenic Intergenic -351623 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 317-11 chr18 6733479 6733755 + 1.5 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -3755 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 414.5-21 chr5 151582587 151582929 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -13814 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 240.5-30 chr8 89473384 89473586 + 1.5 NA Intergenic Intergenic 284226 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 300.5-13 chr12 120675335 120675792 + 1.5 NA Intergenic L2b|LINE|L2 -11586 NM_014730 9761 Hs.744910 NM_014730 ENSG00000110917 MLEC KIAA0152 malectin protein-coding 330.5-30 chr5 39610256 39610580 + 1.5 NA Intergenic AluY|SINE|Alu 89987 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 241-19 chr6 26470191 26470401 + 1.5 NA TTS (NM_001197233) TTS (NM_001197233) 12213 NR_038992 285819 Hs.575357 NR_038992 LOC285819 - uncharacterized LOC285819 ncRNA 146.5-7 chr10 66488818 66488927 + 1.5 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -437164 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 240-40 chr6 119179083 119179284 + 1.5 NA 3' UTR (NM_005907, exon 13 of 13) 3' UTR (NM_005907, exon 13 of 13) -29990 NM_001100411 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 227-31 chr5 158080118 158080269 + 1.5 NA Intergenic Intergenic -221048 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 148-9 chr8 123895190 123895356 + 1.5 NA intron (NM_001039112, intron 1 of 40) L1MC4|LINE|L1 43286 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 377-16 chr2 167973072 167973611 + 1.5 NA intron (NM_013233, intron 16 of 17) MER57-int|LTR|ERV1 -32197 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 282.5-23 chr4 64658989 64659281 + 1.5 NA Intergenic Intergenic -249675 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 294.5-34 chr8 136629481 136629921 + 1.5 NA intron (NR_147196, intron 2 of 5) MLT1G3-int|LTR|ERVL-MaLR 98903 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 317.5-3 chr1 177495819 177496099 + 1.5 NA Intergenic L1M1|LINE|L1 144373 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 279.5-7 chr16 71620590 71620936 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -5421 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 236.5-26 chr4 93326571 93326755 + 1.5 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -502090 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 341.5-11 chr14 43126527 43126887 + 1.5 NA Intergenic Intergenic 1380576 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 542.5-4 chr10 49291046 49291589 + 1.5 NA Intergenic LTR47A|LTR|ERVL 7576 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 437-20 chr17 61640877 61641195 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -49817 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 298.5-21 chr6 68235810 68236060 + 1.5 NA intron (NR_125854, intron 3 of 3) MLT1K-int|LTR|ERVL-MaLR 93964 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 174.5-15 chr2 124937628 124937816 + 1.5 NA Intergenic Intergenic 912435 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 218-20 chr2 66033930 66034113 + 1.5 NA Intergenic Intergenic 324307 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 208-6 chr12 32890242 32890495 + 1.5 NA intron (NM_001005242, intron 1 of 12) intron (NM_001005242, intron 1 of 12) 6478 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 381-9 chr14 81322687 81323013 + 1.5 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -101460 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 136-8 chr5 106181609 106181728 + 1.5 NA Intergenic L1MB4|LINE|L1 829346 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 272-37 chr7 13274867 13275205 + 1.5 NA Intergenic HAL1ME|LINE|L1 587403 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 150.5-7 chr15 59992289 59992421 + 1.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -11956 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 334.5-4 chr1 223626802 223627358 + 1.5 NA exon (NM_001143962, exon 5 of 21) exon (NM_001143962, exon 5 of 21) 38621 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 164.5-9 chr16 14101903 14102153 + 1.5 NA intron (NM_001365418, intron 3 of 5) intron (NM_001365418, intron 3 of 5) 30709 NM_001365417 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 358-26 chr19 51363373 51363782 + 1.5 NA intron (NM_001985, intron 1 of 5) AluSz|SINE|Alu 2811 NM_001985 2109 Hs.348531 NM_001985 ENSG00000105379 ETFB FP585|MADD electron transfer flavoprotein subunit beta protein-coding 355-28 chr5 11642876 11643192 + 1.5 NA intron (NM_001288717, intron 2 of 20) MER97c|DNA|hAT-Tip100 -53968 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 428.5-16 chr2 151815663 151816050 + 1.5 NA intron (NM_177985, intron 1 of 5) intron (NM_177985, intron 1 of 5) 12565 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 326-32 chr6 21259263 21259664 + 1.5 NA Intergenic AluY|SINE|Alu 252429 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 354 chr1 26573817 26574072 + 1.5 NA intron (NM_002953, intron 21 of 21) AluSg4|SINE|Alu 19402 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 290.5-26 chr6 49954397 49954737 + 1.5 NA Intergenic MER77B|LTR|ERVL -5123 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 316.5-20 chr4 107818654 107818890 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -5793 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 537.5-2 chr10 81335770 81336458 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -539080 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 323.5-9 chr14 43849810 43850026 + 1.5 NA Intergenic L1P5|LINE|L1 657365 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 130-2 chr15 25261777 25261926 + 1.5 NA intron (NR_146177, intron 139 of 147) L1MCa|LINE|L1 -2676 NR_003498 100036566 NR_003498 SNORD115-45 HBII-52-45|SNORD115-48 small nucleolar RNA, C/D box 115-45 snoRNA 164.5-16 chr2 124573035 124573202 + 1.5 NA intron (NM_130773, intron 11 of 23) intron (NM_130773, intron 11 of 23) 547831 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 245-37 chr8 61520554 61520785 + 1.5 NA intron (NM_004318, intron 22 of 24) intron (NM_004318, intron 22 of 24) 169142 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 198-4 chr12 32044079 32044381 + 1.5 NA Intergenic LTR10B1|LTR|ERV1 -62577 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 218-24 chr22 31790153 31790401 + 1.5 NA intron (NR_146296, intron 10 of 42) intron (NR_146296, intron 10 of 42) 36254 NM_001369901 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 218-32 chr7 51068791 51069036 + 1.5 NA intron (NM_001346444, intron 7 of 7) intron (NM_001346444, intron 7 of 7) 247896 NM_015198 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 197.5-20 chr2 142249130 142249357 + 1.5 NA Intergenic LTR78|LTR|ERV1 -117542 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 211.5-30 chr6 35883353 35883528 + 1.5 NA intron (NM_003137, intron 6 of 15) intron (NM_003137, intron 6 of 15) 37658 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 290-10 chr15 92949118 92949380 + 1.5 NA TTS (NM_001042572) TTS (NM_001042572) 44850 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 339-11 chr17 64529588 64529984 + 1.5 NA intron (NM_138363, intron 12 of 19) intron (NM_138363, intron 12 of 19) 22809 NR_133644 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 327.5-3 chr12 23026960 23027414 + 1.5 NA Intergenic Intergenic -148449 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 206-24 chr7 66145238 66145401 + 1.5 NA intron (NR_024548, intron 5 of 6) MIR3|SINE|MIR 30472 NM_014478 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9|RPC9 CGRP receptor component protein-coding 178.5-7 chr2 134347142 134347351 + 1.5 NA intron (NM_001371457, intron 9 of 16) intron (NM_001371457, intron 9 of 16) 93174 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 208.5-28 chr7 18746084 18746338 + 1.5 NA intron (NM_058176, intron 12 of 22) intron (NM_058176, intron 12 of 22) 236941 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 226-2 chr1 118519450 118519600 + 1.5 NA Intergenic L1M1|LINE|L1 -334297 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 457.5-13 chr2 102511854 102512208 + 1.5 NA intron (NM_001011552, intron 6 of 11) intron (NM_001011552, intron 6 of 11) 38805 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 326.5-32 chr7 47869839 47870171 + 1.5 NA intron (NM_138295, intron 24 of 56) L1MB8|LINE|L1 74714 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 236-21 chr3 97315625 97315892 + 1.5 NA intron (NM_001080448, intron 5 of 17) MIRb|SINE|MIR -123849 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 293.5-5 chr11 130440178 130440511 + 1.5 NA Intergenic Intergenic -8630 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 360.5-21 chr5 15571426 15571794 + 1.5 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 43392 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 284-24 chr3 126481193 126481519 + 1.5 NA 3' UTR (NM_144639, exon 20 of 20) 3' UTR (NM_144639, exon 20 of 20) -5437 NM_001040653 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 360-11 chr10 125998778 125999169 + 1.5 NA intron (NM_001363549, intron 6 of 10) intron (NM_001363549, intron 6 of 10) -25700 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 352-23 chr20 56505367 56505674 + 1.5 NA intron (NR_160308, intron 3 of 6) intron (NR_160308, intron 3 of 6) -19209 NM_001012971 200232 Hs.504907 NM_001012971 ENSG00000124103 FAM209A C20orf106|dJ1153D9.3 family with sequence similarity 209 member A protein-coding 312-18 chr3 170133385 170133662 + 1.5 NA intron (NM_024947, intron 7 of 14) intron (NM_024947, intron 7 of 14) 48210 NM_024947 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 318.5-6 chr12 97595795 97596159 + 1.5 NA Intergenic Intergenic 32165 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 224-25 chr5 173831610 173831896 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -40811 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 238.5-28 chr4 61078622 61078907 + 1.5 NA Intergenic L1PB4|LINE|L1 -64892 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 319-39 chr8 105157070 105157434 + 1.5 NA Intergenic Intergenic -161186 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 297.5-34 chr8 99095594 99095952 + 1.5 NA intron (NR_047582, intron 4 of 8) intron (NR_047582, intron 4 of 8) 82507 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 197.5-7 chr11 18089621 18089818 + 1.5 NA intron (NM_138421, intron 6 of 11) intron (NM_138421, intron 6 of 11) 16363 NM_138421 113174 Hs.591998 NM_138421 ENSG00000166788 SAAL1 SPACIA1 serum amyloid A like 1 protein-coding 207.5-21 chr20 50291655 50291920 + 1.5 NA promoter-TSS (NR_034124) promoter-TSS (NR_034124) -933 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 288-36 chr6 103052882 103053127 + 1.5 NA Intergenic Intergenic 1654019 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 246-11 chr5 9144569 9144807 + 1.5 NA intron (NM_003966, intron 12 of 22) intron (NM_003966, intron 12 of 22) -90793 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 211.5-3 chr10 42102947 42103145 + 1.5 NA Intergenic Intergenic 264999 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 256-2 chr11 87697372 87697675 + 1.5 NA Intergenic L1P4a|LINE|L1 21888 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 265-7 chr10 118694166 118694437 + 1.5 NA intron (NM_153810, intron 6 of 8) intron (NM_153810, intron 6 of 8) 60669 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 391.5-14 chr17 31150866 31151252 + 1.5 NA intron (NM_001042492, intron 1 of 57) AluSx|SINE|Alu 56082 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 248.5-31 chr8 141628874 141629130 + 1.5 NA Intergenic AluJr|SINE|Alu -121772 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 453.5 chr1 240999442 240999853 + 1.5 NA intron (NM_001350116, intron 3 of 16) AluSz6|SINE|Alu -132625 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 324-28 chr3 148474414 148474684 + 1.5 NA Intergenic Intergenic 193658 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 288.5-12 chr11 74351914 74352324 + 1.5 NA intron (NM_173582, intron 5 of 13) intron (NM_173582, intron 5 of 13) -40479 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 651-7 chr4 164664051 164664616 + 1.5 NA Intergenic Intergenic -89798 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 252.5-6 chr11 11662664 11662940 + 1.5 NA Intergenic Intergenic -6080 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 280.5-8 chr13 61508694 61509001 + 1.5 NA Intergenic Intergenic -80901 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 398.5-5 chr12 19491625 19492139 + 1.5 NA intron (NM_001114176, intron 3 of 8) intron (NM_001114176, intron 3 of 8) 51283 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 156.5-11 chr2 83142080 83142264 + 1.5 NA Intergenic L1MC3|LINE|L1 285369 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 173-7 chr2 70769716 70769902 + 1.5 NA Intergenic Intergenic -1609 NM_001185055 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 257-5 chr11 22083150 22083345 + 1.5 NA Intergenic Intergenic -109838 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 201.5-31 chr9 71036120 71036372 + 1.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 85375 NM_001366146 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 323-13 chr17 81054245 81054695 + 1.5 NA intron (NM_001144888, intron 2 of 13) intron (NM_001144888, intron 2 of 13) 19319 NM_006340 10458 Hs.128316 NM_006340 ENSG00000175866 BAIAP2 BAP2|FLAF3|IRSP53 BAI1 associated protein 2 protein-coding 282-29 chr9 27970854 27971263 + 1.5 NA intron (NM_001354574, intron 5 of 5) MIRb|SINE|MIR -397192 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 314.5-9 chr12 34618177 34618551 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 595868 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 236.5-35 chr7 37873233 37873521 + 1.5 NA intron (NM_016616, intron 11 of 17) AluSg|SINE|Alu 24780 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 354-15 chr2 88134847 88135284 + 1.5 NA Intergenic Intergenic -7003 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 207.5-39 chr8 125415258 125415480 + 1.5 NA Intergenic Intergenic -14989 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 243-23 chr22 49131635 49131952 + 1.5 NA Intergenic AluSx1|SINE|Alu 265023 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 173.5-15 chr3 2861279 2861462 + 1.5 NA intron (NM_175607, intron 7 of 24) intron (NM_175607, intron 7 of 24) -30845 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 417.5-4 chr14 86738309 86738828 + 1.5 NA Intergenic MER4D1|LTR|ERV1 -167210 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 179.5-2 chr1 63529209 63529437 + 1.5 NA intron (NM_032437, intron 2 of 13) intron (NM_032437, intron 2 of 13) 5798 NM_032437 84455 Hs.652324 NM_032437 ENSG00000203965 EFCAB7 - EF-hand calcium binding domain 7 protein-coding 422-15 chr2 101975992 101976473 + 1.5 NA Intergenic Intergenic -7233 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 218-9 chr14 73034955 73035147 + 1.5 NA Intergenic AluSp|SINE|Alu -7945 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 174-7 chr13 51397961 51398116 + 1.5 NA intron (NM_012141, intron 4 of 17) intron (NM_012141, intron 4 of 17) -49399 NR_049878 100847003 NR_049878 ENSG00000266072 MIR5693 - microRNA 5693 ncRNA 304.5-16 chr13 82150189 82150544 + 1.5 NA Intergenic L1PA16|LINE|L1 -923383 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 311-10 chr11 117050825 117051164 + 1.5 NA intron (NM_001366687, intron 1 of 4) MLT2B2|LTR|ERVL 47434 NM_025164 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 138-7 chr5 28588135 28588292 + 1.5 NA Intergenic Intergenic -300548 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 228.5-27 chr4 77871021 77871200 + 1.5 NA intron (NM_020236, intron 1 of 8) intron (NM_020236, intron 1 of 8) 8280 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 149-6 chr2 205754803 205754902 + 1.5 NA intron (NM_018534, intron 12 of 15) intron (NM_018534, intron 12 of 15) 72351 NM_201266 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 169-11 chr22 19348388 19348518 + 1.5 NA intron (NM_003325, intron 24 of 24) L1MEg|LINE|L1 -56734 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 192-12 chr2 8243847 8243999 + 1.5 NA intron (NR_152741, intron 8 of 9) LTR85c|LTR|Gypsy? 84496 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 211.5-9 chr14 62142114 62142261 + 1.5 NA Intergenic MIRb|SINE|MIR -2214 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 373.5-4 chr10 125400371 125400777 + 1.5 NA Intergenic Intergenic -173797 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 235-34 chr7 15031965 15032172 + 1.5 NA Intergenic L2|LINE|L2 -57210 NM_001350717 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 241.5-6 chr10 69519283 69519663 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity 53949 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 372.5-5 chr14 67667840 67668144 + 1.5 NA intron (NM_006370, intron 1 of 5) intron (NM_006370, intron 1 of 5) 6640 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 302.5-30 chr3 157262351 157262781 + 1.5 NA intron (NM_024621, intron 13 of 13) Charlie2b|DNA|hAT-Charlie -101806 NM_001308185 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 274-29 chr5 38979081 38979330 + 1.5 NA intron (NM_001285439, intron 8 of 38) AluJr|SINE|Alu 95194 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 262.5-2 chr11 12315978 12316234 + 1.5 NA intron (NM_032867, intron 3 of 8) L1MEg|LINE|L1 29206 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 214-11 chr2 109451472 109451695 + 1.5 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) -137958 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 369-21 chr2 118371863 118372162 + 1.5 NA Intergenic MER45A|DNA|hAT-Tip100 -185626 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 203.5-33 chr8 100472260 100472416 + 1.5 NA Intergenic Intergenic 87421 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 175-13 chr5 26394105 26394288 + 1.5 NA Intergenic L1MEg|LINE|L1 644390 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 489.5-3 chr10 12912439 12913065 + 1.5 NA intron (NM_001282658, intron 6 of 6) L1MA8|LINE|L1 88961 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 352-4 chr11 116138237 116138699 + 1.5 NA Intergenic Intergenic -378268 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 181-15 chr6 34425186 34425469 + 1.5 NA intron (NM_001202470, intron 1 of 8) intron (NM_001202470, intron 1 of 8) 742 NM_001203245 6204 Hs.406620 NM_001014 ENSG00000124614 RPS10 DBA9|S10 ribosomal protein S10 protein-coding 176-7 chr2 187684760 187684919 + 1.5 NA Intergenic AluSz|SINE|Alu -130334 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 300.5-32 chr4 55560745 55561165 + 1.5 NA intron (NM_152401, intron 5 of 5) MLT1A0|LTR|ERVL-MaLR -14046 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 366-22 chr7 89141272 89141647 + 1.5 NA intron (NM_181646, intron 1 of 3) L1MB4|LINE|L1 -345722 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 383-6 chr10 64509183 64509789 + 1.5 NA Intergenic Intergenic -316042 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 313.5-22 chr2 230074223 230074497 + 1.5 NA Intergenic Intergenic -5436 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 504-22 chr7 12769195 12769796 + 1.5 NA Intergenic Intergenic 81862 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 193-18 chr4 30663359 30663604 + 1.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -56888 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 205.5-6 chr14 57246478 57246659 + 1.5 NA intron (NM_006544, intron 3 of 17) intron (NM_006544, intron 3 of 17) 22337 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 271-18 chr22 43512511 43512772 + 1.5 NA Intergenic ERVL-int|LTR|ERVL -3613 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 149.5-18 chr8 128050903 128051113 + 1.5 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 1856 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 251.5-8 chr11 112963723 112964065 + 1.5 NA promoter-TSS (NR_120563) promoter-TSS (NR_120563) -434 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 179-17 chr5 117237039 117237217 + 1.5 NA Intergenic Intergenic -178384 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 181.5-26 chr5 29690104 29690255 + 1.5 NA Intergenic L1MEd|LINE|L1 -190381 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 259.5-34 chr4 107844783 107844979 + 1.5 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 20316 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 173.5-17 chr3 156870065 156870249 + 1.5 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 43804 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 445-13 chr2 165173366 165173887 + 1.5 NA intron (NM_006922, intron 3 of 27) intron (NM_006922, intron 3 of 27) 30424 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 201.5-4 chr10 54294258 54294536 + 1.5 NA intron (NM_001354411, intron 8 of 34) L1PA6|LINE|L1 -191833 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 347 chr1 203123452 203123687 + 1.5 NA Intergenic MIR3|SINE|MIR -4157 NM_001365066 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 194-20 chr6 49457673 49457865 + 1.5 NA exon (NM_000255, exon 3 of 13) exon (NM_000255, exon 3 of 13) 5484 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 152.5-19 chr19 29128585 29128686 + 1.5 NA Intergenic Intergenic 84516 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 439.5-7 chr11 33286792 33287139 + 1.5 NA exon (NM_005734, exon 2 of 17) exon (NM_005734, exon 2 of 17) 28634 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 249-15 chr2 130263473 130263721 + 1.5 NA Intergenic Intergenic -65158 NM_207312 112714 Hs.433336 NM_207312 ENSG00000152086 TUBA3E - tubulin alpha 3e protein-coding 354-7 chr13 52420642 52420906 + 1.5 NA intron (NM_001282168, intron 10 of 13) L1MA1|LINE|L1 -14602 NM_199263 55901 Hs.325667 NM_018676 ENSG00000136114 THSD1 TMTSP|UNQ3010 thrombospondin type 1 domain containing 1 protein-coding 280.5-27 chr5 35995384 35995648 + 1.5 NA intron (NM_001171873, intron 2 of 5) PRIMA4-int|LTR|ERV1 -4126 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 153-8 chr2 62217805 62217942 + 1.5 NA intron (NM_001319075, intron 1 of 1) intron (NM_001319075, intron 1 of 1) 2352 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 369.5-10 chr18 76408695 76409053 + 1.5 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -82778 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 420-12 chr16 3016068 3016458 + 1.5 NA intron (NM_021195, intron 1 of 1) intron (NM_021195, intron 1 of 1) 1920 NM_021195 9074 Hs.533779 NM_021195 ENSG00000184697 CLDN6 - claudin 6 protein-coding 202-20 chr5 112363055 112363274 + 1.5 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 56113 NM_001347887 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 455-10 chr13 81734048 81734425 + 1.5 NA Intergenic Intergenic -507253 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 208-20 chr6 36237713 36237961 + 1.5 NA Intergenic L1ME3|LINE|L1 -5331 NM_001145716 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 166-12 chr6 53709484 53709660 + 1.5 NA Intergenic Intergenic -43816 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 580.5 chr14 59599588 59600043 + 1.5 NA intron (NM_021136, intron 8 of 8) L3|LINE|CR1 10324 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 229-22 chr4 77164316 77164575 + 1.5 NA exon (NM_004354, exon 7 of 8) exon (NM_004354, exon 7 of 8) 7238 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 148.5-9 chr14 30490204 30490372 + 1.5 NA intron (NR_151720, intron 3 of 3) MER110-int|LTR|ERV1 -68835 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 307.5-31 chr5 149607110 149607600 + 1.5 NA intron (NM_001001669, intron 3 of 12) L2a|LINE|L2 25857 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 278.5-26 chr8 24022443 24022741 + 1.5 NA Intergenic L1M4|LINE|L1 -167786 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 342.5-31 chr8 11143061 11143559 + 1.5 NA intron (NR_138154, intron 1 of 2) 7SLRNA|srpRNA|srpRNA 58056 NR_138152 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 149-9 chr4 154315395 154315529 + 1.5 NA intron (NM_001358235, intron 10 of 19) intron (NM_001358235, intron 10 of 19) 176337 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 441-35 chr6 75207487 75208091 + 1.5 NA Intergenic Intergenic -1736 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 291-17 chr4 32302801 32303266 + 1.5 NA Intergenic L1M5|LINE|L1 -48005 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 333-35 chr7 45477912 45478153 + 1.5 NA Intergenic AluSg|SINE|Alu -96108 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 347.5-25 chr6 132452344 132452672 + 1.5 NA non-coding (NR_137169, exon 9 of 9) non-coding (NR_137169, exon 9 of 9) -51033 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 552.5-3 chr11 73906460 73907058 + 1.5 NA intron (NM_001267803, intron 7 of 12) intron (NM_001267803, intron 7 of 12) 17978 NM_001363556 80227 Hs.525017 NM_025155 ENSG00000175575 PAAF1 PAAF|Rpn14|WDR71 proteasomal ATPase associated factor 1 protein-coding 175.5-22 chr3 107304311 107304437 + 1.5 NA intron (NR_028302, intron 2 of 3) intron (NR_028302, intron 2 of 3) 63682 NR_028302 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 131.5-13 chr15 68198185 68198292 + 1.5 NA intron (NM_001286695, intron 1 of 2) intron (NM_001286695, intron 1 of 2) 7872 NM_001286695 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 324.5-19 chr16 8270327 8270617 + 1.5 NA Intergenic L1PB1|LINE|L1 319366 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 124-2 chr11 69988760 69988854 + 1.5 NA Intergenic L2c|LINE|L2 75117 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 314.5-29 chr5 166081415 166081767 + 1.5 NA Intergenic Intergenic 844779 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 248.5-9 chr14 51003422 51003646 + 1.5 NA intron (NM_015163, intron 5 of 9) intron (NM_015163, intron 5 of 9) -59051 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 378-3 chr10 59927004 59927405 + 1.5 NA Intergenic Intergenic -20648 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 294.5-29 chr5 116742688 116743012 + 1.5 NA TTS (NR_104678) TTS (NR_104678) 19359 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 122.5-5 chr12 127703312 127703412 + 1.5 NA Intergenic L1MCb|LINE|L1 -47774 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 456.5-6 chr13 50826978 50827347 + 1.5 NA intron (NM_001306135, intron 1 of 1) L1MEd|LINE|L1 16777 NM_198989 220107 Hs.673860 NM_198989 ENSG00000186047 DLEU7 - deleted in lymphocytic leukemia 7 protein-coding 301-19 chr16 72679848 72680094 + 1.5 NA Intergenic L1MB4|LINE|L1 -15001 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 240-31 chr3 179921207 179921414 + 1.5 NA intron (NR_110061, intron 3 of 3) intron (NR_110061, intron 3 of 3) 21773 NR_110060 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 423.5-31 chr9 33123794 33124369 + 1.5 NA intron (NM_001497, intron 2 of 5) intron (NM_001497, intron 2 of 5) 15389 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 434.5-13 chr5 94264567 94265101 + 1.5 NA intron (NM_001145678, intron 20 of 20) AluSz6|SINE|Alu -153135 NM_001163417 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 325.5-29 chr7 93164568 93165027 + 1.5 NA Intergenic Intergenic -16412 NM_001303496 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 137.5-9 chr12 126470121 126470259 + 1.5 NA intron (NR_130748, intron 10 of 11) intron (NR_130748, intron 10 of 11) -20863 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 152-9 chr22 27582567 27582706 + 1.5 NA Intergenic AluJo|SINE|Alu 219120 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 151.5-24 chr7 122304735 122304871 + 1.5 NA promoter-TSS (NM_001160264) promoter-TSS (NM_001160264) -53 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 124-4 chr20 47413672 47413842 + 1.5 NA Intergenic AluJb|SINE|Alu -1613 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 159.5-22 chr3 105479170 105479297 + 1.5 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 112324 NM_001627 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 421-23 chr3 113105155 113105622 + 1.5 NA Intergenic Intergenic 62343 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 155-3 chr16 88939705 88939874 + 1.5 NA promoter-TSS (NM_001290330) promoter-TSS (NM_001290330) -248 NM_001290330 100129697 Hs.689377 NM_001290330 LOC100129697 - uncharacterized LOC100129697 protein-coding 126.5-13 chr5 135935429 135935582 + 1.5 NA intron (NR_152421, intron 3 of 5) intron (NR_152421, intron 3 of 5) 5208 NR_152420 26223 Hs.591275 NM_012159 FBXL21P FBL3B|FBXL21|FBXL3B|FBXL3P|Fbl21 F-box and leucine rich repeat protein 21, pseudogene pseudo 136.5-14 chr3 123988074 123988165 + 1.5 NA intron (NR_133917, intron 1 of 2) intron (NR_133917, intron 1 of 2) 3233 NM_017578 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 463-21 chr4 80926866 80927271 + 1.5 NA intron (NM_152770, intron 4 of 5) intron (NM_152770, intron 4 of 5) -103640 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 193-13 chr21 22529857 22530074 + 1.5 NA Intergenic Intergenic 431348 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 343.5-32 chr8 102502946 102503359 + 1.5 NA Intergenic Intergenic -48437 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 228.5-14 chr16 82573026 82573278 + 1.5 NA Intergenic L1MC3|LINE|L1 -53817 NM_001220492 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 144.5-10 chr20 24200292 24200424 + 1.5 NA intron (NR_040102, intron 1 of 3) intron (NR_040102, intron 1 of 3) 591 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 209-23 chr4 116513260 116513525 + 1.5 NA Intergenic L2a|LINE|L2 213667 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 327.5-25 chr5 150424301 150424738 + 1.5 NA Intergenic AluYm1|SINE|Alu -11583 NM_001025158 972 Hs.436568 NM_004355 ENSG00000019582 CD74 DHLAG|HLADG|II|Ia-GAMMA|p33 CD74 molecule protein-coding 189-24 chr7 79833360 79833594 + 1.5 NA Intergenic L1MC5a|LINE|L1 -301354 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 152.5-13 chr14 81302856 81302986 + 1.5 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -81531 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 142-6 chr2 101402458 101402602 + 1.5 NA exon (NM_001145664, exon 11 of 12) exon (NM_001145664, exon 11 of 12) -15027 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 234-9 chr12 24845473 24845719 + 1.5 NA intron (NM_001178091, intron 5 of 9) MIRc|SINE|MIR 56626 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 392.5-19 chr2 99342163 99342777 + 1.5 NA intron (NM_015904, intron 1 of 23) intron (NM_015904, intron 1 of 23) 5081 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 288.5-23 chr18 55172695 55173030 + 1.5 NA Intergenic HAL1b|LINE|L1 -48556 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 318-21 chr2 153139196 153139676 + 1.5 NA Intergenic L2c|LINE|L2 339326 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 323.5-13 chr18 12335838 12336096 + 1.5 NA intron (NM_006796, intron 16 of 16) LTR8A|LTR|ERV1 27726 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 330-3 chr1 206418127 206418577 + 1.5 NA intron (NM_015326, intron 10 of 21) intron (NM_015326, intron 10 of 21) -52124 NM_001193321 9641 Hs.321045 NM_014002 ENSG00000263528 IKBKE IKK-E|IKK-i|IKKE|IKKI inhibitor of nuclear factor kappa B kinase subunit epsilon protein-coding 160-3 chr1 62145384 62145524 + 1.5 NA intron (NM_001350145, intron 41 of 43) AluJb|SINE|Alu -49395 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 206-8 chr18 73560137 73560301 + 1.5 NA Intergenic (CTTCCAC)n|Simple_repeat|Simple_repeat 235278 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 420.5-23 chr9 114004896 114005462 + 1.5 NA intron (NM_001318042, intron 6 of 14) MIR|SINE|MIR 73121 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 237-9 chr2 40110414 40110623 + 1.5 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 192884 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 468.5-3 chr13 67882590 67883114 + 1.5 NA Intergenic LTR84b|LTR|ERVL 510465 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 589.5-2 chr12 98618763 98619434 + 1.5 NA intron (NM_201613, intron 1 of 1) intron (NM_201613, intron 1 of 1) 19463 NR_003015 677832 Hs.693250 NR_003015 ENSG00000212443 SNORA53 ACA53 small nucleolar RNA, H/ACA box 53 snoRNA 214.5-35 chr8 119822277 119822605 + 1.5 NA intron (NM_003184, intron 2 of 25) AluJb|SINE|Alu 10400 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 380-15 chr4 167016876 167017275 + 1.5 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 217351 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 320.5-6 chr14 56898213 56898440 + 1.5 NA non-coding (NR_029385, exon 3 of 4) non-coding (NR_029385, exon 3 of 4) 85168 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 276-26 chr2 203302235 203302424 + 1.5 NA 3' UTR (NM_177538, exon 13 of 13) 3' UTR (NM_177538, exon 13 of 13) -25910 NM_001282932 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 320.5-31 chr7 12622854 12623225 + 1.5 NA intron (NR_156701, intron 5 of 14) intron (NR_156701, intron 5 of 14) 33516 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 286.5-2 chr1 84966496 84966890 + 1.5 NA intron (NM_153259, intron 1 of 13) intron (NM_153259, intron 1 of 13) 30420 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 242.5-13 chr2 120704508 120704799 + 1.5 NA Intergenic MIR|SINE|MIR -31215 NM_001371271 183.5-7 chr11 98722289 98722439 + 1.5 NA Intergenic Intergenic -298585 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 482.5-11 chr21 30521069 30521489 + 1.5 NA Intergenic L1MD3|LINE|L1 -19138 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 261.5-11 chr13 92780479 92780792 + 1.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -59021 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 139-8 chr5 171232855 171233006 + 1.5 NA intron (NM_022897, intron 22 of 27) L1ME4a|LINE|L1 -76318 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 271-6 chr14 43294824 43295258 + 1.5 NA Intergenic Intergenic 1212242 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 275.5-11 chr12 13211069 13211286 + 1.5 NA intron (NM_001423, intron 1 of 4) intron (NM_001423, intron 1 of 4) 14451 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 485.5-18 chr5 129779593 129779948 + 1.5 NA Intergenic L1MA4|LINE|L1 31676 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 241.5-35 chr8 22002634 22002920 + 1.5 NA intron (NM_015024, intron 25 of 27) intron (NM_015024, intron 25 of 27) -21357 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 533.5-3 chr12 54591030 54591459 + 1.5 NA Intergenic Intergenic -2585 NM_006741 5502 Hs.505662 NM_006741 ENSG00000135447 PPP1R1A I1|IPP1 protein phosphatase 1 regulatory inhibitor subunit 1A protein-coding 328-28 chr5 97417375 97417593 + 1.5 NA Intergenic Intergenic -87212 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 383.5-17 chr4 62344554 62344866 + 1.5 NA Intergenic Intergenic -182945 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 382.5-25 chrX 17771102 17771489 + 1.5 NA Intergenic Intergenic 33802 NM_001037540 6322 Hs.109655 NM_006746 ENSG00000047634 SCML1 - Scm polycomb group protein like 1 protein-coding 400-10 chr16 12852419 12852850 + 1.5 NA Intergenic Intergenic -48747 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 114.5-2 chr1 186505314 186505394 + 1.5 NA Intergenic L1M5|LINE|L1 -44240 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 309-13 chr14 98957163 98957462 + 1.5 NA Intergenic Intergenic 245699 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 512-13 chr3 112866096 112866555 + 1.5 NA Intergenic L1MA3|LINE|L1 -20375 NM_001008784 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 532.5-2 chr1 50211358 50211856 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 101774 NR_136725 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 400.5-29 chr8 130485809 130486137 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -42299 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 349-23 chr20 52514977 52515517 + 1.5 NA Intergenic MamRep137|DNA|TcMar-Tigger -105591 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 212-17 chr3 167488568 167488805 + 1.5 NA intron (NM_001348951, intron 18 of 18) intron (NM_001348951, intron 18 of 18) -14554 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 134.5-15 chr3 188355683 188355833 + 1.5 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 130353 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 332-3 chr11 105191889 105192157 + 1.5 NA Intergenic HAL1|LINE|L1 -52254 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 307.5-30 chr5 19523005 19523368 + 1.5 NA intron (NM_001349559, intron 9 of 12) L1ME3F|LINE|L1 363086 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 137.5-3 chr1 199531267 199531424 + 1.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 382747 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 352.5-14 chr18 3254608 3255040 + 1.5 NA TTS (NR_130144) TTS (NR_130144) 2611 NM_001303049 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 178-19 chr8 142111325 142111480 + 1.5 NA Intergenic Intergenic -64937 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 179.5-6 chr17 18963347 18963597 + 1.5 NA intron (NM_001270648, intron 5 of 13) intron (NM_001270648, intron 5 of 13) 11307 NM_001270648 125206 Hs.462418 NM_152351 ENSG00000154025 SLC5A10 SGLT-5|SGLT5 solute carrier family 5 member 10 protein-coding 294-24 chr21 26664620 26665057 + 1.5 NA Intergenic LOR1-int|LTR|ERV1 -91552 NR_135472 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 305.5-20 chr20 54887561 54887901 + 1.5 NA Intergenic Intergenic 412138 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 242.5-14 chr2 163772758 163773058 + 1.5 NA Intergenic AluSq2|SINE|Alu -36900 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 333-2 chr10 39134326 39134628 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 437881 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 201-5 chr12 61214207 61214359 + 1.5 NA Intergenic Intergenic 978556 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 237-5 chr12 14054471 14054798 + 1.5 NA Intergenic Intergenic -74278 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 346.5-26 chr7 7494902 7495368 + 1.5 NA intron (NM_001037763, intron 11 of 34) MER33|DNA|hAT-Charlie 40738 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 298.5-15 chr22 28279023 28279407 + 1.5 NA intron (NM_001145418, intron 5 of 22) L1ME2z|LINE|L1 -180654 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 202-3 chr12 121925534 121925713 + 1.5 NA intron (NM_001178003, intron 3 of 17) intron (NM_001178003, intron 3 of 17) 7031 NM_144668 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 177.5-3 chr1 119211311 119211525 + 1.5 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -70746 NM_201263 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 327-11 chr12 29040393 29040713 + 1.5 NA Intergenic Intergenic -108725 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 346.5-10 chr18 62511779 62512163 + 1.5 NA Intergenic L1M4a2|LINE|L1 -11054 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 179.5-3 chr10 126794901 126795043 + 1.5 NA Intergenic L1MC3|LINE|L1 -110437 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 255-31 chr8 48877213 48877546 + 1.5 NA Intergenic Intergenic 44050 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 500.5-10 chr20 53922961 53923392 + 1.5 NA Intergenic Intergenic -47467 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 179-8 chr16 24759253 24759397 + 1.5 NA intron (NM_014494, intron 4 of 24) intron (NM_014494, intron 4 of 24) 29674 NM_014494 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 304-19 chr2 46053688 46054068 + 1.5 NA intron (NM_005400, intron 10 of 14) L1MB3|LINE|L1 -243529 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 183-15 chr22 33288524 33288841 + 1.5 NA intron (NM_133642, intron 12 of 14) intron (NM_133642, intron 12 of 14) 147987 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 376 chr1 171939898 171940294 + 1.5 NA intron (NM_001278252, intron 2 of 14) intron (NM_001278252, intron 2 of 14) 75904 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 435-44 chrX 19792098 19792452 + 1.5 NA intron (NM_031892, intron 2 of 17) L1ME4a|LINE|L1 7498 NM_001024666 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 171.5-27 chr7 50059546 50059675 + 1.5 NA intron (NM_007009, intron 3 of 7) intron (NM_007009, intron 3 of 7) 33636 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 202-14 chr3 39751516 39751799 + 1.5 NA Intergenic Intergenic -57257 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 417.5-9 chr20 33426775 33427139 + 1.5 NA intron (NM_003098, intron 2 of 7) AluJb|SINE|Alu 16935 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 219.5-15 chr18 2419456 2419733 + 1.5 NA Intergenic Intergenic 151911 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 246.5-12 chr15 59183759 59184033 + 1.5 NA intron (NM_004998, intron 18 of 27) L1MA2|LINE|L1 -12634 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 332-8 chr14 72185611 72186066 + 1.5 NA intron (NM_001370288, intron 2 of 16) AluJb|SINE|Alu 252311 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 433.5-21 chr3 16698953 16699430 + 1.5 NA Intergenic Intergenic -93768 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 239.5-18 chr5 110490164 110490347 + 1.5 NA intron (NM_001039763, intron 12 of 13) L1MB7|LINE|L1 23660 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 342-41 chr8 107951687 107951947 + 1.5 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 130122 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 219.5-34 chr6 155047153 155047311 + 1.5 NA Intergenic AluSz|SINE|Alu -43057 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 313-16 chr18 11790387 11790841 + 1.5 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 38529 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 316.5-22 chr5 27054391 27054875 + 1.5 NA Intergenic AluSx|SINE|Alu -16047 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 125.5-13 chr8 54189094 54189238 + 1.5 NA Intergenic Intergenic 53925 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 215-2 chr1 78002637 78002794 + 1.5 NA intron (NM_001317100, intron 2 of 3) intron (NM_001317100, intron 2 of 3) -2113 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 267.5-3 chr1 180892137 180892374 + 1.5 NA Intergenic Intergenic -20642 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 250.5-41 chr8 80780990 80781170 + 1.5 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 93388 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 295.5-4 chr10 82824196 82824422 + 1.5 NA intron (NR_163252, intron 3 of 8) L1MB7|LINE|L1 -591389 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 122-2 chr2 59668383 59668573 + 1.5 NA Intergenic Intergenic 450770 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 388.5-25 chr7 138786922 138787373 + 1.5 NA intron (NM_020632, intron 1 of 21) MIR3|SINE|MIR -10847 NM_001085429 155006 Hs.567729 NM_001085429 ENSG00000214128 TMEM213 - transmembrane protein 213 protein-coding 175.5-4 chr11 81101603 81101793 + 1.5 NA Intergenic L2a|LINE|L2 -338895 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 216.5-9 chr11 27385965 27386321 + 1.5 NA intron (NM_018490, intron 4 of 17) intron (NM_018490, intron 4 of 17) -22895 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 152-2 chr10 38528205 38528350 + 1.5 NA Intergenic Intergenic 100131 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 267-8 chr12 77295590 77295817 + 1.5 NA Intergenic Intergenic -230134 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 284-8 chr12 21850061 21850430 + 1.5 NA intron (NM_005691, intron 22 of 37) MER20|DNA|hAT-Charlie -75539 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 331.5-19 chr3 150421412 150421784 + 1.5 NA intron (NM_001303264, intron 1 of 2) intron (NM_001303264, intron 1 of 2) 13300 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 237.5-24 chr7 68745292 68745450 + 1.5 NA Intergenic AluJr|SINE|Alu 725118 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 263.5-12 chr2 122880995 122881257 + 1.5 NA Intergenic Intergenic 192355 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 254-11 chr15 64164072 64164326 + 1.5 NA Intergenic Intergenic -1044 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 352-26 chr3 2169696 2170127 + 1.5 NA intron (NM_175607, intron 2 of 24) L1MEd|LINE|L1 -25670 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 305.5-27 chr5 111371355 111371573 + 1.5 NA intron (NM_001323376, intron 2 of 8) intron (NM_001323376, intron 2 of 8) -140762 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 135.5-11 chr5 34848523 34848673 + 1.5 NA intron (NM_001317949, intron 3 of 10) L2a|LINE|L2 9217 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 240.5-3 chr12 81081726 81082060 + 1.5 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 3814 NM_001330243 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 409-23 chr4 64295316 64295671 + 1.5 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 113957 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 311.5-13 chr11 38274679 38275095 + 1.5 NA Intergenic Intergenic 336286 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 383.5-10 chr14 99638700 99639005 + 1.5 NA intron (NM_001329411, intron 2 of 8) intron (NM_001329411, intron 2 of 8) -6258 NM_001127258 84439 Hs.131714 NM_032425 ENSG00000182218 HHIPL1 KIAA1822|UNQ9245 HHIP like 1 protein-coding 445.5-20 chr5 22312654 22313007 + 1.5 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -98980 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 207-21 chr5 114194063 114194237 + 1.5 NA Intergenic L1MB8|LINE|L1 -167920 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 237-14 chr20 38753626 38753905 + 1.5 NA intron (NM_024855, intron 3 of 8) L1MEf|LINE|L1 5305 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M actin related protein 5 protein-coding 324.5-37 chr7 42576847 42577345 + 1.5 NA Intergenic Intergenic 129351 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 278-6 chr11 12020591 12020988 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -10086 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 181.5-32 chr7 48498652 48498785 + 1.5 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 327260 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 378-9 chr14 79410536 79410980 + 1.5 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 131378 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 116.5-22 chr9 99626197 99626308 + 1.5 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 193637 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 266-9 chr12 79767244 79767486 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -76268 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 157-10 chr21 15778446 15778585 + 1.5 NA intron (NM_001283042, intron 4 of 24) MER58A|DNA|hAT-Charlie 48533 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 286.5-16 chr2 11528803 11529074 + 1.5 NA Intergenic Intergenic -5107 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 191.5-17 chr4 34046801 34046982 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -6998 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 136-10 chr6 46911750 46911917 + 1.5 NA intron (NM_015234, intron 1 of 20) L2c|LINE|L2 8362 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 1011.5-2 chr8 134146788 134147831 + 1.5 NA Intergenic Intergenic 260813 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 619.5-2 chr16 27641547 27642153 + 1.5 NA intron (NM_015202, intron 5 of 27) intron (NM_015202, intron 5 of 27) 77179 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 184.5-3 chr10 11425608 11425775 + 1.5 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger -81017 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 151-4 chr14 49628244 49628395 + 1.5 NA intron (NM_018139, intron 1 of 2) intron (NM_018139, intron 1 of 2) 6911 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 418.5-18 chr3 66830563 66830961 + 1.5 NA Intergenic Intergenic -92426 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 130-9 chr8 129042304 129042459 + 1.5 NA Intergenic Intergenic -76380 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 226-14 chr22 20532271 20532440 + 1.5 NA intron (NM_001293237, intron 1 of 16) intron (NM_001293237, intron 1 of 16) 24308 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 255.5-26 chr7 53671857 53672137 + 1.5 NA intron (NR_038371, intron 5 of 5) MSTC|LTR|ERVL-MaLR 139934 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 210.5-31 chr9 133067530 133067708 + 1.5 NA intron (NM_001807, intron 7 of 10) AluSc8|SINE|Alu 5637 NM_001807 1056 Hs.533258 NM_001807 ENSG00000170835 CEL BAL|BSDL|BSSL|CELL|CEase|FAP|FAPP|LIPA|MODY8 carboxyl ester lipase protein-coding 433.5-25 chr5 97549914 97550297 + 1.5 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 45409 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 320.5-20 chr22 35984320 35984599 + 1.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) -22829 NM_001349996 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 314-31 chr5 15382504 15382789 + 1.5 NA Intergenic Intergenic -116086 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 650.5-10 chr2 170417894 170418590 + 1.5 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -67299 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 412.5-15 chr2 134050452 134050966 + 1.5 NA Intergenic L1MC1|LINE|L1 -69226 NM_001371457 174.5-23 chr3 94002592 94002743 + 1.5 NA intron (NM_001321328, intron 3 of 10) intron (NM_001321328, intron 3 of 10) 22512 NR_135621 200894 Hs.533086 NM_144996 ENSG00000169379 ARL13B ARL2L1|JBTS8 ADP ribosylation factor like GTPase 13B protein-coding 328-33 chr7 113836623 113836842 + 1.5 NA Intergenic Intergenic 82277 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 173.5-14 chr22 46554846 46555034 + 1.5 NA Intergenic OldhAT1|DNA|hAT-Ac -17320 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 268.5-9 chr15 26861801 26862087 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -5118 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 123.5-3 chr10 122689485 122689598 + 1.5 NA Intergenic MIR|SINE|MIR 10305 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 146.5-4 chr1 247651806 247651946 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 21165 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 252-15 chr2 133439252 133439589 + 1.5 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 129043 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 175.5-24 chr5 38795576 38795738 + 1.5 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) 50172 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 270.5-33 chr8 58875206 58875492 + 1.5 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -215496 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 432-6 chr14 65120348 65120694 + 1.5 NA Intergenic L1ME1|LINE|L1 -17826 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 596-14 chr5 131976265 131976812 + 1.5 NA intron (NM_001205250, intron 10 of 20) intron (NM_001205250, intron 10 of 20) -30875 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 155-2 chr12 31729457 31729640 + 1.5 NA promoter-TSS (NM_001278411) promoter-TSS (NM_001278411) -374 NM_001278411 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 424.5-7 chr14 50984609 50984964 + 1.5 NA intron (NM_015163, intron 7 of 9) intron (NM_015163, intron 7 of 9) -40303 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 223.5-18 chr18 73606820 73607130 + 1.5 NA Intergenic L1M5|LINE|L1 282034 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 233-11 chr17 49786125 49786368 + 1.5 NA Intergenic Intergenic -2435 NM_001199158 11143 Hs.21907 NM_007067 ENSG00000136504 KAT7 HBO1|HBOA|MYST2|ZC2HC7 lysine acetyltransferase 7 protein-coding 367.5-34 chr7 34451950 34452364 + 1.5 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -206061 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 375.5-14 chr2 107393190 107393553 + 1.5 NA Intergenic LTR12C|LTR|ERV1 -43846 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 304.5-17 chr14 53013168 53013400 + 1.5 NA Intergenic HAL1b|LINE|L1 -62187 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 413-36 chr6 96561260 96561801 + 1.5 NA promoter-TSS (NM_001170807) promoter-TSS (NM_001170807) -995 NM_020482 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 200 chr1 57610239 57610423 + 1.5 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR -185410 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 313.5-29 chr4 56372888 56373128 + 1.5 NA intron (NM_001286670, intron 3 of 11) MER39|LTR|ERV1 14483 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 267.5-14 chr3 2012400 2012623 + 1.5 NA Intergenic Intergenic -86292 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 255.5-28 chr9 19525208 19525378 + 1.5 NA intron (NM_020344, intron 8 of 9) intron (NM_020344, intron 8 of 9) 116284 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 238.5-16 chr15 27716187 27716384 + 1.5 NA Intergenic L1MD|LINE|L1 383030 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 190.5-2 chr10 74553830 74554030 + 1.5 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -24606 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 271-20 chr3 159406915 159407131 + 1.5 NA intron (NM_001197108, intron 1 of 6) L1MA3|LINE|L1 124377 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 235.5-15 chr2 111130516 111130764 + 1.5 NA intron (NM_138625, intron 3 of 4) L1MD2|LINE|L1 9726 NM_001204109 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 404-20 chr2 3566022 3566315 + 1.5 NA Intergenic MER97a|DNA|hAT-Tip100 7781 NR_038431 100506054 Hs.606550 NR_038429 ENSG00000234171 RNASEH1-AS1 - RNASEH1 antisense RNA 1 ncRNA 196-14 chr5 115489258 115489477 + 1.5 NA Intergenic Intergenic 55408 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 442.5-24 chr8 81380195 81380563 + 1.5 NA Intergenic MIRb|SINE|MIR 67060 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 159.5-27 chr7 29158135 29158314 + 1.5 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 11677 NM_001293069 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 330.5-2 chr1 79402098 79402556 + 1.5 NA Intergenic L1M4|LINE|L1 -395597 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 445-5 chr14 52682495 52683006 + 1.5 NA intron (NM_014584, intron 2 of 15) AluSq2|SINE|Alu 12808 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 330.5-9 chr10 87520311 87520589 + 1.5 NA intron (NM_001178118, intron 3 of 4) L1ME3G|LINE|L1 12617 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 242.5-25 chr4 132361052 132361224 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -229951 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 305.5-16 chr2 52318996 52319282 + 1.5 NA intron (NR_135237, intron 8 of 10) L1MC5|LINE|L1 -51509 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 272.5-23 chr20 1004882 1005167 + 1.5 NA Intergenic L2a|LINE|L2 -2713 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 356.5-17 chr15 62986748 62987084 + 1.5 NA Intergenic MIR|SINE|MIR -55831 NM_001365779 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 207-11 chr17 4896001 4896322 + 1.5 NA intron (NM_015716, intron 27 of 30) intron (NM_015716, intron 27 of 30) -3375 NM_001145536 100130311 Hs.579243 NM_001145536 ENSG00000205710 C17orf107 - chromosome 17 open reading frame 107 protein-coding 271.5-12 chr12 53225276 53225646 + 1.5 NA intron (NM_001243730, intron 2 of 8) intron (NM_001243730, intron 2 of 8) -5099 NM_001042728 5916 Hs.1497 NM_000966 ENSG00000172819 RARG NR1B3|RARC retinoic acid receptor gamma protein-coding 169.5-21 chr8 83025196 83025351 + 1.5 NA Intergenic Intergenic 113169 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 280.5-14 chr2 88222511 88222827 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 49530 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 332.5-11 chr3 98975639 98976028 + 1.5 NA Intergenic L1PA10|LINE|L1 -74138 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 285.5-23 chr5 117065277 117065685 + 1.5 NA Intergenic Intergenic -303272 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 344.5-24 chr4 165158809 165159208 + 1.5 NA Intergenic Intergenic -46148 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 281-34 chr6 16671513 16671804 + 1.5 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 88526 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 413.5-15 chr3 18283614 18284027 + 1.5 NA Intergenic L2a|LINE|L2 141519 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 218-15 chr17 27837142 27837360 + 1.5 NA Intergenic Intergenic -36722 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 432-14 chr19 28504427 28505000 + 1.5 NA intron (NR_110759, intron 5 of 9) L3|LINE|CR1 -101975 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 199.5-23 chr20 22347171 22347383 + 1.5 NA Intergenic Intergenic -64476 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 372.5 chr10 60105121 60105445 + 1.5 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 35733 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 196-9 chr22 21939736 21939866 + 1.5 NA intron (NM_014634, intron 2 of 7) intron (NM_014634, intron 2 of 7) 1564 NR_147620 100286925 Hs.659180 NR_147620 LOC100286925 - uncharacterized LOC100286925 ncRNA 455.5-9 chr17 51111365 51111798 + 1.5 NA intron (NM_001130527, intron 1 of 29) intron (NM_001130527, intron 1 of 29) 9287 NM_001130527 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 386.5-11 chr17 68026543 68026895 + 1.5 NA Intergenic L1MC|LINE|L1 -9016 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 237-12 chr20 6551355 6551704 + 1.5 NA Intergenic Intergenic 124797 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 335.5-12 chr14 75116146 75116440 + 1.5 NA intron (NM_033116, intron 6 of 21) AluJr|SINE|Alu 10755 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 561 chr1 65178855 65179322 + 1.5 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 30094 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 462-29 chr4 99925636 99926211 + 1.5 NA intron (NM_001278311, intron 2 of 3) intron (NM_001278311, intron 2 of 3) 20695 NM_001278310 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 233-23 chr4 131317658 131317885 + 1.5 NA Intergenic L1PA17|LINE|L1 -447067 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 333-31 chr5 16292649 16292916 + 1.5 NA Intergenic L1MC3|LINE|L1 112541 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 201 chr1 105702650 105702863 + 1.5 NA Intergenic Intergenic -83821 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 269.5-46 chr6 152342310 152342690 + 1.5 NA intron (NM_182961, intron 74 of 145) intron (NM_182961, intron 74 of 145) -38030 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 148.5-21 chr5 21222238 21222404 + 1.5 NA Intergenic Intergenic -237159 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 361-2 chr1 68406209 68406508 + 1.5 NA Intergenic AluJo|SINE|Alu 43596 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 320-39 chr9 107411750 107412223 + 1.5 NA Intergenic L1MB3|LINE|L1 54599 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 462-8 chr10 91295534 91295944 + 1.5 NA Intergenic Intergenic 75076 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 347.5-27 chr7 40985560 40985910 + 1.5 NA Intergenic Intergenic -5796 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 169.5-17 chr5 176948181 176948341 + 1.5 NA intron (NM_016290, intron 9 of 14) intron (NM_016290, intron 9 of 14) -48915 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 455-18 chr2 40903693 40904107 + 1.5 NA Intergenic L1MEg|LINE|L1 -391465 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 325.5-32 chr8 111497777 111498119 + 1.5 NA Intergenic Intergenic 121309 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 275-23 chr20 2034237 2034599 + 1.5 NA Intergenic MIRb|SINE|MIR -40133 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 413.5-3 chr11 26089732 26090088 + 1.5 NA Intergenic L2|LINE|L2 -99213 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 436.5-11 chr3 83314317 83314689 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 1328361 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 387-13 chr16 68569388 68569736 + 1.5 NA intron (NM_001305204, intron 4 of 4) L2|LINE|L2 30271 NM_001305208 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 345.5-2 chr1 87398194 87398608 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie -26746 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 318.5-31 chr7 1864012 1864424 + 1.5 NA intron (NM_001013837, intron 18 of 18) intron (NM_001013837, intron 18 of 18) -19965 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 311-32 chr8 143496408 143496847 + 1.5 NA intron (NM_015117, intron 4 of 11) intron (NM_015117, intron 4 of 11) 9621 NR_145785 109623485 NR_145785 SNORD149 - small nucleolar RNA, C/D box 149 snoRNA 207-6 chr11 74465248 74465455 + 1.5 NA intron (NM_005472, intron 1 of 2) intron (NM_005472, intron 1 of 2) 2204 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 557.5-15 chr9 72288028 72288505 + 1.5 NA Intergenic L1PB4|LINE|L1 -17170 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 189-5 chr14 63861686 63861902 + 1.5 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 8790 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 191.5-4 chr11 112878108 112878352 + 1.5 NA Intergenic Intergenic -83190 NM_001242607 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 190-3 chr14 99226803 99227086 + 1.5 NA intron (NM_022898, intron 2 of 2) intron (NM_022898, intron 2 of 2) 45253 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 270.5-26 chr6 121577485 121577838 + 1.5 NA Intergenic Intergenic 142015 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 503.5-8 chr18 25365416 25365862 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -13473 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 218.5-4 chr10 81157133 81157349 + 1.5 NA Intergenic L1ME3B|LINE|L1 507444 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 289.5-34 chr5 130033038 130033234 + 1.5 NA intron (NM_175856, intron 2 of 2) ERV3-16A3_LTR|LTR|ERVL 128671 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 479-7 chr14 57348040 57348417 + 1.5 NA Intergenic Intergenic -42358 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 134-7 chr7 80447952 80448048 + 1.5 NA Intergenic Intergenic 64064 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 617-4 chr3 164734600 164735164 + 1.5 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 96598 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 398-30 chr6 62413847 62414257 + 1.5 NA Intergenic L1PREC2|LINE|L1 -127825 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 290-19 chr20 56951574 56951818 + 1.5 NA Intergenic Intergenic -262000 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 209 chr1 107387467 107387717 + 1.5 NA intron (NM_001113226, intron 2 of 6) intron (NM_001113226, intron 2 of 6) 239523 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 349-5 chr1 162699215 162699578 + 1.5 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 66932 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 356.5-24 chr2 143813461 143813963 + 1.5 NA Intergenic AluSq2|SINE|Alu -123355 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 199-4 chr11 113566508 113566688 + 1.5 NA Intergenic Intergenic -91200 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 201.5-18 chr2 29800339 29800541 + 1.5 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 121146 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 474.5-17 chr8 85198539 85198938 + 1.5 NA intron (NM_001083589, intron 1 of 7) L2a|LINE|L2 11073 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 247.5-7 chr10 82171556 82171854 + 1.5 NA intron (NM_001165973, intron 2 of 10) MLT1J|LTR|ERVL-MaLR 61215 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 320-27 chr6 98819176 98819680 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 12272 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 298-27 chr7 48833551 48833830 + 1.5 NA Intergenic Intergenic -90857 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 163 chr1 108537460 108537653 + 1.5 NA Intergenic L1PA16|LINE|L1 -22544 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 395-37 chr8 113763451 113763997 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -326785 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 438.5-11 chr4 111879661 111880113 + 1.5 NA Intergenic Intergenic -265567 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 189.5-7 chr13 37819081 37819255 + 1.5 NA intron (NM_003306, intron 1 of 10) L1PA13|LINE|L1 51257 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 589.5-11 chr9 10999553 11000295 + 1.5 NA Intergenic Intergenic 386718 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 201-6 chr12 84586087 84586363 + 1.5 NA Intergenic Intergenic 326574 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 225.5-9 chr11 100102697 100102883 + 1.5 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 546645 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 372-23 chr2 83378365 83378754 + 1.5 NA Intergenic L1MCb|LINE|L1 -144255 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 172-3 chr10 113218883 113218997 + 1.5 NA Intergenic Intergenic 89669 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 142-3 chr11 29025651 29025802 + 1.5 NA Intergenic Intergenic -548178 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 209.5-21 chr20 2333734 2333946 + 1.5 NA intron (NM_003245, intron 10 of 12) MIR3|SINE|MIR 37839 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 359.5-5 chr1 245886820 245887109 + 1.5 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 530448 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 306.5-24 chr3 78275614 78275952 + 1.5 NA Intergenic Intergenic -226820 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 215.5-41 chr8 9148623 9148839 + 1.5 NA intron (NM_001201329, intron 1 of 1) intron (NM_001201329, intron 1 of 1) 1927 NM_024607 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 216.5-23 chr20 53438930 53439216 + 1.5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -113697 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 389-38 chr5 125961489 125961959 + 1.5 NA Intergenic LTR16E1|LTR|ERVL -217853 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 323.5-3 chr1 160456712 160456985 + 1.5 NA Intergenic LTR16B|LTR|ERVL 56284 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 178-10 chr17 81250745 81250992 + 1.5 NA TTS (NM_138570) TTS (NM_138570) 10954 NR_148426 284184 Hs.356545 NM_001086521 ENSG00000224877 NDUFAF8 C17orf89 NADH:ubiquinone oxidoreductase complex assembly factor 8 protein-coding 238-24 chr3 5105348 5105646 + 1.5 NA Intergenic Intergenic -16795 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 494-21 chr8 25792372 25792814 + 1.5 NA Intergenic Intergenic 252820 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 219.5-13 chr16 7026543 7026801 + 1.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 252863 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 594-8 chr2 46135871 46136341 + 1.5 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -161301 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 485.5-16 chr5 64872778 64873402 + 1.5 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 104160 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 281-33 chr5 133153378 133153615 + 1.5 NA Intergenic Intergenic 101483 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 247-5 chr11 79618359 79618563 + 1.5 NA Intergenic L3|LINE|CR1 -177431 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 433.5-12 chr18 78869892 78870296 + 1.5 NA Intergenic Intergenic -110181 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 238.5-23 chr3 11703158 11703372 + 1.5 NA intron (NM_014667, intron 1 of 5) intron (NM_014667, intron 1 of 5) 17274 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 357-43 chr8 52921911 52922247 + 1.5 NA Intergenic Intergenic -17829 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 188.5-14 chr3 74903374 74903530 + 1.5 NA Intergenic Intergenic -311024 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 167.5-18 chr4 166411085 166411292 + 1.5 NA Intergenic Intergenic 537951 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 171.5-25 chr6 14140074 14140252 + 1.5 NA Intergenic Intergenic 22391 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 219-32 chr6 150562229 150562580 + 1.5 NA Intergenic L1ME2|LINE|L1 -37481 NR_138136 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 131.5-27 chr8 121119485 121119576 + 1.5 NA Intergenic Intergenic -307484 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 452.5-19 chr7 98169364 98169766 + 1.5 NA intron (NM_014916, intron 6 of 13) intron (NM_014916, intron 6 of 13) -42689 NM_177455 168620 Hs.511979 NM_177455 ENSG00000180535 BHLHA15 BHLHB8|MIST1 basic helix-loop-helix family member a15 protein-coding 399.5-8 chr16 72568356 72568701 + 1.5 NA intron (NR_159370, intron 2 of 5) L1ME4b|LINE|L1 96442 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 482-18 chr5 67837785 67838172 + 1.5 NA Intergenic Intergenic 44765 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 328.5-13 chr15 71038269 71038528 + 1.5 NA intron (NM_017691, intron 15 of 15) Charlie15a|DNA|hAT-Charlie -103051 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 203.5-18 chr22 26415294 26415521 + 1.5 NA Intergenic AluSx|SINE|Alu -13853 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 205.5-23 chr5 125821496 125821699 + 1.5 NA Intergenic Intergenic 328336 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 309-42 chr8 109005185 109005428 + 1.5 NA Intergenic L1MC5|LINE|L1 -81322 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 337-4 chr1 182190109 182190390 + 1.5 NA Intergenic Intergenic 123812 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 354.5-4 chr1 246200747 246201202 + 1.5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 216438 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 452-9 chr15 47900740 47901114 + 1.5 NA Intergenic Intergenic -54691 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 176-3 chr11 115187845 115187962 + 1.5 NA intron (NM_001098517, intron 7 of 8) intron (NM_001098517, intron 7 of 8) -145674 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 415.5-20 chr8 100047191 100047708 + 1.5 NA intron (NM_015668, intron 11 of 27) intron (NM_015668, intron 11 of 27) 42867 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 361-9 chr11 66761874 66762181 + 1.5 NA intron (NM_024650, intron 4 of 16) intron (NM_024650, intron 4 of 16) 17258 NM_001302084 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 208.5-30 chr8 40572856 40573153 + 1.5 NA intron (NM_024645, intron 6 of 6) MIRc|SINE|MIR -229641 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 339-12 chr18 31755828 31756145 + 1.5 NA Intergenic Intergenic 4894 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 130.5-2 chr10 32924974 32925144 + 1.5 NA intron (NM_002211, intron 6 of 15) intron (NM_002211, intron 6 of 15) 10499 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 169 chr1 29206872 29207010 + 1.5 NA intron (NM_001349715, intron 4 of 10) intron (NM_001349715, intron 4 of 10) 23993 NR_146212 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|DYTOABG|ETR1|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 229-3 chr1 219871543 219871695 + 1.5 NA Intergenic AluJb|SINE|Alu 57032 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 189-20 chr5 18921522 18921693 + 1.5 NA Intergenic Intergenic 964665 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 175.5-13 chr2 96325685 96325872 + 1.5 NA promoter-TSS (NM_178495) promoter-TSS (NM_178495) -419 NM_001324490 150771 Hs.65009 NM_178495 ENSG00000198885 ITPRIPL1 KIAA1754L ITPRIP like 1 protein-coding 338.5-18 chr2 24867133 24867641 + 1.5 NA intron (NM_001320613, intron 3 of 21) MLT1A1|LTR|ERVL-MaLR 52850 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 286-3 chr10 70468307 70468585 + 1.5 NA Intergenic AluSq2|SINE|Alu -10321 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing paladin 1 protein-coding 323.5-26 chr5 148463549 148463834 + 1.5 NA intron (NM_001040169, intron 5 of 5) L1MC1|LINE|L1 79733 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 338.5-20 chr2 235876340 235876644 + 1.5 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) 291894 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 142-4 chr11 102593402 102593542 + 1.5 NA exon (NM_004771, exon 8 of 10) exon (NM_004771, exon 8 of 10) 31860 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 164-7 chr15 59237809 59237958 + 1.5 NA intron (NM_004998, intron 4 of 27) MamTip1|DNA|hAT-Tip100 31040 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 167-3 chr12 66181412 66181544 + 1.5 NA Intergenic Intergenic -7736 NM_007199 11213 Hs.369265 NM_007199 ENSG00000090376 IRAK3 ASRT5|IRAKM interleukin 1 receptor associated kinase 3 protein-coding 135-3 chr20 8913281 8913437 + 1.5 NA Intergenic Intergenic 82174 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 162.5-6 chr12 96605338 96605588 + 1.5 NA intron (NM_001306084, intron 26 of 67) intron (NM_001306084, intron 26 of 67) 115886 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 304.5-19 chr15 58321267 58321617 + 1.5 NA Intergenic L1MB2|LINE|L1 -110549 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 423.5 chr1 111169997 111170319 + 1.5 NA intron (NR_138483, intron 5 of 9) intron (NR_138483, intron 5 of 9) 29935 NR_138483 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 208 chr1 168782243 168782438 + 1.5 NA Intergenic Intergenic -4601 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 215.5-16 chr16 82883916 82884166 + 1.5 NA intron (NM_001220490, intron 2 of 12) MIR|SINE|MIR 106257 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 146-2 chr10 58170118 58170278 + 1.5 NA Intergenic AluJo|SINE|Alu 97696 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 475-17 chr2 100635118 100635478 + 1.5 NA Intergenic L1MD2|LINE|L1 31559 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 176-2 chr10 64032422 64032620 + 1.5 NA Intergenic L3|LINE|CR1 -510631 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 312.5-15 chr19 48122807 48123133 + 1.5 NA non-coding (NR_135499, exon 22 of 27) non-coding (NR_135499, exon 22 of 27) -12118 NM_001159322 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 319-26 chr3 47476839 47477086 + 1.5 NA Intergenic Intergenic -1021 NM_001320044 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 319.5-20 chr3 362718 362940 + 1.5 NA TTS (NR_110739) TTS (NR_110739) 22966 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 223.5-12 chr14 32460031 32460272 + 1.5 NA intron (NM_004274, intron 2 of 13) L1MC5|LINE|L1 130853 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 224-19 chr22 19290543 19290811 + 1.5 NA intron (NM_007098, intron 1 of 32) intron (NM_007098, intron 1 of 32) 1042 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 381-10 chr18 7955682 7956014 + 1.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 388532 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 273-2 chr10 47240153 47240396 + 1.5 NA Intergenic Intergenic -59923 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 271.5-34 chr5 173624601 173624981 + 1.5 NA Intergenic Intergenic -8128 NM_001159651 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 186-28 chr8 71915783 71916046 + 1.5 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -71418 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 180.5-24 chr9 80298877 80299174 + 1.5 NA Intergenic MER110-int|LTR|ERV1 324002 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 347-18 chr3 72833646 72833986 + 1.5 NA intron (NM_018130, intron 4 of 10) intron (NM_018130, intron 4 of 10) 14629 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 586-3 chr11 35477887 35478324 + 1.5 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 47511 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 370.5-22 chr5 101903201 101903581 + 1.5 NA Intergenic Intergenic 392893 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 268-13 chr22 20492101 20492475 + 1.5 NA intron (NR_033825, intron 1 of 5) intron (NR_033825, intron 1 of 5) 3507 NR_033825 84861 Hs.517419 NM_032775 ENSG00000099910 KLHL22 KELCHL kelch like family member 22 protein-coding 144-5 chr2 144511956 144512128 + 1.5 NA non-coding (NR_033258, exon 3 of 3) non-coding (NR_033258, exon 3 of 3) -7572 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 290.5-4 chr1 181946353 181946572 + 1.5 NA Intergenic L1PA13|LINE|L1 115250 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 510-18 chr5 30658237 30658723 + 1.5 NA Intergenic Intergenic -535206 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 158-4 chr12 83054673 83054884 + 1.5 NA intron (NM_152588, intron 10 of 11) intron (NM_152588, intron 10 of 11) 367623 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 395.5-4 chr11 48020961 48021486 + 1.5 NA intron (NM_001098503, intron 1 of 8) AluSq2|SINE|Alu 40664 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 200-8 chr14 54904776 54905015 + 1.5 NA Intergenic Intergenic -2069 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 255.5-22 chr5 21114690 21115070 + 1.5 NA Intergenic LTR8|LTR|ERV1 -344600 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 507.5-6 chr11 16168880 16169417 + 1.5 NA intron (NM_033326, intron 6 of 15) intron (NM_033326, intron 6 of 15) 187398 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 278.5-4 chr14 32117752 32118148 + 1.5 NA intron (NM_001030055, intron 3 of 6) intron (NM_001030055, intron 3 of 6) 40646 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 146-4 chr11 76142389 76142543 + 1.5 NA 3' UTR (NM_003369, exon 15 of 15) 3' UTR (NM_003369, exon 15 of 15) 64036 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 189-8 chr15 65189796 65189954 + 1.5 NA Intergenic Intergenic -4533 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 244.5-16 chr17 18889410 18889673 + 1.5 NA intron (NM_001353099, intron 7 of 11) intron (NM_001353099, intron 7 of 11) 24072 NM_001243940 5636 Hs.632236 NM_002767 ENSG00000141127 PRPSAP2 PAP41 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding 207.5-34 chr7 89554262 89554422 + 1.5 NA Intergenic L1ME1|LINE|L1 -565058 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 292.5-4 chr1 207860577 207860849 + 1.5 NA Intergenic L2a|LINE|L2 -38010 NR_135299 100128537 Hs.445414 NR_135298 MIR29B2CHG C1orf132 MIR29B2 and MIR29C host gene ncRNA 401-31 chr7 121492788 121493055 + 1.5 NA Intergenic Intergenic -96553 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 276.5-10 chr13 62080226 62080491 + 1.5 NA Intergenic L1MCc|LINE|L1 -50810 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 116.5-7 chr20 38717603 38717739 + 1.5 NA Intergenic MIR|SINE|MIR -6815 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 464.5-9 chr12 56113988 56114491 + 1.5 NA TTS (NM_006191) TTS (NM_006191) -2394 NM_021104 6171 Hs.112553 NM_021104 ENSG00000229117 RPL41 L41 ribosomal protein L41 protein-coding 342-8 chr11 83698069 83698524 + 1.5 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -15871 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 369.5-15 chr2 78740759 78741317 + 1.5 NA Intergenic MER4D|LTR|ERV1 195507 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 231.5-21 chr3 114511993 114512174 + 1.5 NA intron (NR_121662, intron 3 of 6) L2|LINE|L2 58490 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 190.5-19 chrX 48240076 48240307 + 1.5 NA Intergenic AluSx|SINE|Alu -15201 NM_005635 6756 Hs.434142 NM_005635 ENSG00000126752 SSX1 CT5.1|SSRC SSX family member 1 protein-coding 605-6 chr2 49018011 49018775 + 1.5 NA intron (NM_000145, intron 3 of 9) intron (NM_000145, intron 3 of 9) -41210 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 310.5-25 chr2 136148327 136148608 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -30312 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 212.5-26 chr5 166228682 166228883 + 1.5 NA Intergenic Intergenic 697588 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 228-15 chr6 102524830 102525030 + 1.5 NA Intergenic Intergenic 1125945 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 305.5-7 chr13 80534895 80535210 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -193926 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 315-29 chr4 56568135 56568448 + 1.5 NA intron (NM_001256475, intron 4 of 8) L1MEc|LINE|L1 37685 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 171-11 chr3 187579899 187580074 + 1.5 NA Intergenic L1M5|LINE|L1 90408 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 222.5-5 chr13 113408986 113409165 + 1.5 NA intron (NM_001304433, intron 1 of 1) intron (NM_001304433, intron 1 of 1) 5318 NM_001304433 101928841 Hs.646609 NM_001003399 LOC101928841 - collagen alpha-1(II) chain-like protein-coding 478-31 chr8 111341438 111341852 + 1.5 NA Intergenic Intergenic -34994 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 116.5-16 chr6 24448029 24448139 + 1.5 NA intron (NM_001503, intron 16 of 24) intron (NM_001503, intron 16 of 24) 41494 NM_001503 2822 Hs.533291 NM_001503 ENSG00000112293 GPLD1 GPIPLD|GPIPLDM|PIGPLD|PIGPLD1|PLD glycosylphosphatidylinositol specific phospholipase D1 protein-coding 528-28 chr5 43282987 43283475 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 29950 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 389-9 chr14 30330031 30330451 + 1.5 NA Intergenic Intergenic -228882 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 218.5-34 chr8 88492923 88493112 + 1.5 NA Intergenic Intergenic -165534 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 355-16 chr2 20161633 20161908 + 1.5 NA Intergenic L1M5|LINE|L1 63360 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 170.5-25 chr9 16329407 16329560 + 1.5 NA Intergenic MIRb|SINE|MIR -53170 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 207.5-44 chrX 71119450 71119590 + 1.5 NA intron (NM_005120, intron 2 of 44) intron (NM_005120, intron 2 of 44) 924 NM_005120 9968 Hs.409226 NM_005120 ENSG00000184634 MED12 ARC240|CAGH45|FGS1|HOPA|MED12S|OHDOX|OKS|OPA1|TNRC11|TRAP230 mediator complex subunit 12 protein-coding 211.5-19 chr2 117511883 117512159 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -302670 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 389-29 chr3 21875892 21876234 + 1.5 NA Intergenic Intergenic -81076 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 308.5-30 chr6 147330001 147330386 + 1.5 NA intron (NM_139244, intron 18 of 25) L3|LINE|CR1 -125579 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 362-17 chr2 44517576 44517943 + 1.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 155812 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 342-24 chr22 21714879 21715380 + 1.5 NA intron (NM_013313, intron 1 of 4) intron (NM_013313, intron 1 of 4) 20665 NR_130910 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 266.5-16 chr2 164194797 164195099 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 373547 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 230-21 chr2 202729739 202730042 + 1.5 NA intron (NM_173511, intron 4 of 7) L2c|LINE|L2 94921 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 362.5-21 chr3 110365197 110365584 + 1.5 NA Intergenic L1ME1|LINE|L1 704569 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 405-16 chr2 228811577 228812167 + 1.5 NA Intergenic L1MA1|LINE|L1 -200477 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 319-2 chr1 190643079 190643343 + 1.5 NA intron (NR_033922, intron 1 of 4) tRNA-Met_|tRNA|tRNA 18321 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 242.5-3 chr11 57183437 57183622 + 1.5 NA intron (NM_001005210, intron 1 of 1) MIR|SINE|MIR 1576 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 226-16 chr4 69945350 69945608 + 1.5 NA intron (NM_001890, intron 15 of 15) intron (NM_001890, intron 15 of 15) 14411 NM_001025104 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 273-13 chr16 71805105 71805358 + 1.5 NA intron (NM_001128, intron 1 of 22) AluSz|SINE|Alu 3603 NM_001030007 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 180-9 chr4 85465757 85466002 + 1.5 NA Intergenic Intergenic -9271 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 337-23 chr5 35240004 35240292 + 1.5 NA Intergenic Intergenic -9661 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 426-37 chr5 4200391 4200694 + 1.5 NA Intergenic Intergenic -572939 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 315-28 chr4 40450905 40451176 + 1.5 NA intron (NM_001098634, intron 3 of 6) intron (NM_001098634, intron 3 of 6) 51079 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 455-30 chr7 22874058 22874441 + 1.5 NA Intergenic FLAM_C|SINE|Alu 17636 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 360-34 chr3 194414402 194414833 + 1.5 NA intron (NM_001367549, intron 31 of 33) intron (NM_001367549, intron 31 of 33) -15351 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 229.5-42 chr8 74282977 74283206 + 1.5 NA intron (NM_020647, intron 2 of 5) L1ME5|LINE|L1 38270 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 217-16 chr22 42490619 42490821 + 1.5 NA Intergenic Intergenic -9859 NR_027786 94009 Hs.360940 NM_170694 ENSG00000172250 SERHL BK126B4.1|BK126B4.2|HS126B42|dJ222E13.1 serine hydrolase like (pseudogene) pseudo 250-3 chr10 23786644 23786975 + 1.5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 92082 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 397-35 chr8 129447977 129448359 + 1.5 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 35974 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 257-40 chr6 38381209 38381438 + 1.5 NA intron (NM_052893, intron 7 of 11) L1MEd|LINE|L1 -100273 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 243-35 chr9 97940689 97940979 + 1.5 NA intron (NM_018437, intron 1 of 4) intron (NM_018437, intron 1 of 4) -2662 NM_197978 55363 Hs.176626 NM_018437 ENSG00000136929 HEMGN CT155|EDAG|EDAG-1|NDR hemogen protein-coding 345-36 chr6 79306942 79307369 + 1.5 NA TTS (NR_130915) TTS (NR_130915) 6229 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 252-9 chr14 72806619 72806862 + 1.5 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 85909 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 257.5-18 chr18 60178163 60178405 + 1.5 NA Intergenic LTR12|LTR|ERV1 194491 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 379-21 chr2 33096207 33096629 + 1.5 NA intron (NM_206943, intron 3 of 33) L1MEf|LINE|L1 -38179 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 340-17 chr16 52461545 52461848 + 1.5 NA intron (NM_001146188, intron 4 of 7) intron (NM_001146188, intron 4 of 7) 85447 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 401-35 chr8 138958431 138958885 + 1.5 NA Intergenic L2b|LINE|L2 -44617 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 439.5-23 chr5 16988488 16988831 + 1.5 NA Intergenic Intergenic -52371 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 300.5-28 chr3 15773933 15774167 + 1.5 NA intron (NM_001349280, intron 2 of 26) L1MD|LINE|L1 -17503 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 305-31 chr3 63074555 63074821 + 1.5 NA Intergenic L1ME3A|LINE|L1 -28000 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 189-17 chr2 79893934 79894061 + 1.5 NA intron (NM_001282598, intron 6 of 17) (TTC)n|Simple_repeat|Simple_repeat -27414 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 267-20 chr2 107822228 107822530 + 1.5 NA TTS (NR_126370) TTS (NR_126370) 4390 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 378.5-10 chr11 87889887 87890321 + 1.5 NA Intergenic L2a|LINE|L2 -170693 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 514-4 chr10 56330131 56330622 + 1.5 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 30883 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 378.5-14 chr19 14440738 14441264 + 1.5 NA intron (NM_213560, intron 1 of 21) intron (NM_213560, intron 1 of 21) 724 NM_213560 5585 Hs.466044 NM_002741 ENSG00000123143 PKN1 DBK|PAK-1|PAK1|PKN|PKN-ALPHA|PRK1|PRKCL1 protein kinase N1 protein-coding 338 chr1 19164705 19165104 + 1.5 NA exon (NM_020765, exon 32 of 106) exon (NM_020765, exon 32 of 106) 45362 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 425-12 chr11 14691355 14691838 + 1.5 NA intron (NM_000922, intron 1 of 15) L2a|LINE|L2 47792 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 420.5-5 chr14 75228973 75229285 + 1.5 NA Intergenic L2c|LINE|L2 -49699 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 211-9 chr15 53077142 53077380 + 1.5 NA Intergenic Intergenic -39104 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 432.5-2 chr1 199070666 199071061 + 1.5 NA intron (NR_126351, intron 2 of 2) intron (NR_126351, intron 2 of 2) -51899 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 139-5 chr2 122962245 122962387 + 1.5 NA Intergenic Intergenic 111165 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 348.5-15 chr3 30659467 30659756 + 1.5 NA intron (NM_001024847, intron 4 of 7) intron (NM_001024847, intron 4 of 7) 53010 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 439.5-26 chr5 150915857 150916294 + 1.5 NA Intergenic LTR22B1|LTR|ERVK -11092 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 481.5-17 chr8 144975777 144976274 + 1.5 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -18840 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 271-27 chr7 17028759 17028946 + 1.5 NA Intergenic Intergenic -146869 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 354-5 chr10 85281369 85281616 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -82554 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 199-12 chr22 28364808 28364977 + 1.5 NA intron (NM_001145418, intron 2 of 22) Tigger1|DNA|TcMar-Tigger -94977 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 406-5 chr11 115449323 115449864 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 52837 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 312.5-9 chr13 107301800 107302181 + 1.5 NA intron (NM_001080396, intron 1 of 2) MSTC|LTR|ERVL-MaLR 18973 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 231.5-28 chr6 73365798 73366081 + 1.5 NA Intergenic AluSx3|SINE|Alu 3281 NM_001017361 154288 Hs.128326 NM_001017361 ENSG00000203908 KHDC3L C6orf221|ECAT1|HYDM2 KH domain containing 3 like, subcortical maternal complex member protein-coding 208-19 chr5 169348578 169348749 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie -47524 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 408.5-20 chr5 56744798 56745233 + 1.5 NA Intergenic Intergenic 27856 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 235.5-11 chr14 72877344 72877628 + 1.5 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 15163 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 247.5-15 chr2 127738297 127738595 + 1.5 NA intron (NM_001006623, intron 7 of 7) L1MC3|LINE|L1 36949 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 274-30 chr5 118671204 118671435 + 1.5 NA Intergenic L1MA7|LINE|L1 75131 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 277-34 chr3 193088802 193089042 + 1.5 NA Intergenic L1MB2|LINE|L1 -152300 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 278.5-6 chr15 63921478 63921811 + 1.5 NA 3' UTR (NM_001363730, exon 10 of 10) 3' UTR (NM_001363730, exon 10 of 10) -6630 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 287-31 chr4 119791864 119792156 + 1.5 NA Intergenic L1ME1|LINE|L1 12505 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 236-10 chr16 10770394 10770622 + 1.5 NA intron (NM_001079512, intron 6 of 7) intron (NM_001079512, intron 6 of 7) 26639 NM_001323597 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 236-28 chr5 67133750 67134021 + 1.5 NA intron (NM_001297651, intron 14 of 25) intron (NM_001297651, intron 14 of 25) 62914 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 313.5-12 chr15 33340577 33340885 + 1.5 NA intron (NM_001243996, intron 1 of 102) MLT1B|LTR|ERVL-MaLR 29764 NM_001036 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 499-14 chr4 58050803 58051224 + 1.5 NA Intergenic Intergenic 485315 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 183-6 chr11 17860597 17860742 + 1.5 NA intron (NR_104040, intron 11 of 11) MIRb|SINE|MIR 124721 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 401.5-32 chr8 58817461 58817785 + 1.5 NA intron (NM_014729, intron 6 of 8) intron (NM_014729, intron 6 of 8) -157770 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 503-3 chr12 19535599 19536056 + 1.5 NA Intergenic L2|LINE|L2 95228 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 293-32 chr9 74801395 74801663 + 1.5 NA intron (NM_017662, intron 16 of 38) intron (NM_017662, intron 16 of 38) 85818 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 299-11 chr12 20369688 20370048 + 1.5 NA exon (NM_000921, exon 1 of 16) exon (NM_000921, exon 1 of 16) 623 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 543.5-6 chr16 24933216 24933893 + 1.5 NA intron (NM_001006634, intron 18 of 19) intron (NM_001006634, intron 18 of 19) 81815 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 160-9 chr2 139402109 139402215 + 1.5 NA Intergenic Intergenic 504838 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 141.5-17 chr4 116250192 116250302 + 1.5 NA Intergenic L1PA17|LINE|L1 -49478 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 269-16 chr15 96211175 96211385 + 1.5 NA intron (NR_125738, intron 2 of 4) LTR1D1|LTR|ERV1 -83439 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 148 chr1 64289398 64289609 + 1.5 NA Intergenic L2a|LINE|L2 85880 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 411.5-3 chr10 36768200 36768599 + 1.5 NA Intergenic AluJb|SINE|Alu -357458 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 169-8 chr2 45954455 45954660 + 1.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 302882 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 390.5-8 chr14 59744782 59745278 + 1.5 NA intron (NM_021136, intron 2 of 8) MSTC|LTR|ERVL-MaLR -98010 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 230.5 chr1 42330565 42330873 + 1.5 NA intron (NM_001198851, intron 1 of 14) intron (NM_001198851, intron 1 of 14) 4236 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 436-12 chr17 66308534 66308927 + 1.5 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 6117 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 415-14 chr14 66602893 66603348 + 1.5 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 95713 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 243-3 chr1 247436937 247437247 + 1.5 NA intron (NM_001127462, intron 5 of 7) intron (NM_001127462, intron 5 of 7) 14890 NM_001004492 127623 Hs.446999 NM_001004492 ENSG00000177535 OR2B11 - olfactory receptor family 2 subfamily B member 11 protein-coding 177.5-26 chr7 96712475 96712696 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -2694 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 352.5-2 chr1 100955260 100955720 + 1.5 NA intron (NM_133496, intron 8 of 10) intron (NM_133496, intron 8 of 10) 59400 NM_133496 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 202.5-7 chr10 63198975 63199173 + 1.5 NA intron (NR_134512, intron 7 of 21) intron (NR_134512, intron 7 of 21) 65746 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 366-21 chr6 89403433 89403826 + 1.5 NA intron (NM_021244, intron 1 of 6) AluJo|SINE|Alu 8644 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 270.5-30 chr7 88028340 88028704 + 1.5 NA intron (NM_001324421, intron 3 of 28) L1MA3|LINE|L1 94271 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 447.5-12 chr2 154177606 154177941 + 1.5 NA intron (NM_052917, intron 4 of 12) (ATAC)n|Simple_repeat|Simple_repeat 233379 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 342.5-15 chr17 33231471 33231872 + 1.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 61317 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 204.5-13 chr14 63496847 63497073 + 1.5 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 11278 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 322-15 chr2 122936138 122936517 + 1.5 NA Intergenic Intergenic 137154 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 331.5-2 chr1 19302280 19302656 + 1.5 NA TTS (NM_003689) TTS (NM_003689) -6732 NR_037847 100506730 NR_037847 LOC100506730 - uncharacterized LOC100506730 ncRNA 281.5-30 chr5 68882167 68882541 + 1.5 NA Intergenic L2a|LINE|L2 147573 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 330.5-15 chr14 78857007 78857417 + 1.5 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -342770 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 346.5-23 chr4 96421384 96421892 + 1.5 NA intron (NR_147149, intron 1 of 3) L1ME3|LINE|L1 110935 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 530.5-14 chr6 45757553 45758178 + 1.5 NA Intergenic Intergenic 179732 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 271.5-31 chr5 118858954 118859178 + 1.5 NA intron (NM_001308081, intron 4 of 5) L1MC5a|LINE|L1 -115520 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 218-8 chr14 65360884 65361146 + 1.5 NA Intergenic MIRc|SINE|MIR -25832 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 213.5-21 chr2 188766348 188766588 + 1.5 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 23655 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 182.5-10 chr18 37003158 37003424 + 1.5 NA intron (NR_136303, intron 6 of 13) L1MA4A|LINE|L1 -79477 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 335.5-19 chr2 164222669 164223115 + 1.5 NA Intergenic Intergenic 345603 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 485.5-9 chr3 30770712 30771071 + 1.5 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 123770 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 414-31 chr5 37050714 37051029 + 1.5 NA intron (NM_015384, intron 40 of 45) AluSz|SINE|Alu 174102 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 401-8 chr10 127417631 127418026 + 1.5 NA intron (NM_001290223, intron 44 of 51) AluSx|SINE|Alu -131521 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 201-2 chr1 157553543 157553779 + 1.5 NA Intergenic L1M5|LINE|L1 -1146 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 341.5-10 chr12 121073724 121074163 + 1.5 NA Intergenic L1MB7|LINE|L1 -34701 NM_198213 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 291.5-23 chr8 21156925 21157293 + 1.5 NA Intergenic L1ME4b|LINE|L1 -141130 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 328-4 chr10 44312245 44312647 + 1.5 NA Intergenic Intergenic 19696 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 166-11 chr6 42867920 42868131 + 1.5 NA 3' UTR (NM_015349, exon 12 of 12) 3' UTR (NM_015349, exon 12 of 12) -11591 NR_134563 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 379-19 chr2 13940238 13940679 + 1.5 NA Intergenic Intergenic 460500 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 279.5-9 chr21 28929008 28929339 + 1.5 NA 3' UTR (NM_001320766, exon 29 of 29) 3' UTR (NM_001320766, exon 29 of 29) -43800 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 579.5-15 chr7 36663343 36663788 + 1.5 NA intron (NM_001177507, intron 2 of 19) L1MC1|LINE|L1 60929 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 399-32 chr6 11918604 11918927 + 1.5 NA Intergenic MamSINE1|SINE|tRNA-RTE 82479 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 239.5-20 chr7 33294878 33295199 + 1.5 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 165474 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 280-38 chr8 122579795 122580104 + 1.5 NA Intergenic Intergenic -11305 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 220.5-35 chr8 62571518 62571773 + 1.5 NA intron (NM_001304533, intron 1 of 6) THE1B-int|LTR|ERVL-MaLR 322791 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 573-3 chr13 109359222 109359879 + 1.5 NA Intergenic (A)n|Simple_repeat|Simple_repeat -41146 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 276.5-5 chr10 52287890 52288127 + 1.5 NA intron (NM_001098512, intron 14 of 17) L2a|LINE|L2 26120 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 204.5-24 chr3 84838636 84838865 + 1.5 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 30825 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 535-7 chr14 35196034 35196489 + 1.5 NA intron (NM_014672, intron 5 of 7) AluJb|SINE|Alu 73709 NM_014672 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 216.5-12 chr13 100607654 100607834 + 1.5 NA intron (NR_146794, intron 16 of 18) intron (NR_146794, intron 16 of 18) -18952 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 272.5-34 chr7 18192475 18192772 + 1.5 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -65314 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 319.5-18 chr22 17165422 17165809 + 1.5 NA promoter-TSS (NM_017829) promoter-TSS (NM_017829) -328 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 252-32 chr8 126839587 126839850 + 1.5 NA Intergenic MIR3|SINE|MIR -173436 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 287.5-18 chr22 35254808 35255093 + 1.5 NA Intergenic Intergenic -2543 NR_027780 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 271.5-7 chr1 245219380 245219627 + 1.5 NA intron (NR_151721, intron 2 of 4) AluJb|SINE|Alu 15014 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 126.5-3 chr11 105879547 105879665 + 1.5 NA intron (NR_046356, intron 4 of 16) intron (NR_046356, intron 4 of 16) 142634 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 369-29 chr4 111781243 111781756 + 1.5 NA Intergenic L1MB4|LINE|L1 -363955 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 233.5-14 chr2 100686593 100686848 + 1.5 NA Intergenic L1MEg|LINE|L1 82981 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 224-26 chr6 147813889 147814083 + 1.5 NA Intergenic Intergenic 305296 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 474.5-13 chr6 95534174 95534649 + 1.5 NA Intergenic Intergenic 43040 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 197.5-34 chr6 28043210 28043390 + 1.5 NA Intergenic Intergenic -30016 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 505.5-20 chr7 42026263 42026791 + 1.5 NA intron (NM_000168, intron 7 of 14) intron (NM_000168, intron 7 of 14) 210682 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 278.5-25 chr7 93390995 93391230 + 1.5 NA Intergenic Intergenic 91743 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 357-47 chr9 73801065 73801580 + 1.5 NA Intergenic L1MA9|LINE|L1 -570209 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 229-25 chr5 92099182 92099456 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -716002 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 275.5-29 chr6 38321211 38321536 + 1.5 NA intron (NM_052893, intron 8 of 11) intron (NM_052893, intron 8 of 11) -160223 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 331-39 chr7 100715208 100715517 + 1.5 NA Intergenic Intergenic -5106 NM_000799 2056 Hs.2303 NM_000799 ENSG00000130427 EPO DBAL|ECYT5|EP|MVCD2 erythropoietin protein-coding 225.5-20 chr2 73811429 73811651 + 1.5 NA intron (NM_001353344, intron 1 of 2) intron (NM_001353344, intron 1 of 2) 2801 NM_001353344 388960 Hs.456833 NM_001080474 ENSG00000187833 C2orf78 COG5373|hCG1989538 chromosome 2 open reading frame 78 protein-coding 429-8 chr12 62854470 62854905 + 1.5 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 80463 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 461-33 chrX 79360657 79360976 + 1.5 NA 3' UTR (NM_004867, exon 6 of 6) 3' UTR (NM_004867, exon 6 of 6) 6518 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 153.5-2 chr10 123783146 123783352 + 1.5 NA intron (NM_198148, intron 6 of 13) MER41B|LTR|ERV1 108558 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 349.5-31 chr8 84491099 84491561 + 1.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 75846 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 308.5-11 chr14 70634305 70634557 + 1.5 NA intron (NR_110071, intron 1 of 2) intron (NR_110071, intron 1 of 2) 6867 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 371.5-29 chr9 127987346 127987664 + 1.5 NA Intergenic MIRb|SINE|MIR -6516 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 191-2 chr12 112818793 112818983 + 1.5 NA intron (NM_001347955, intron 2 of 20) intron (NM_001347955, intron 2 of 20) 27140 NR_145126 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 421-5 chr10 50833553 50834025 + 1.5 NA intron (NM_001370131, intron 5 of 11) intron (NM_001370131, intron 5 of 11) 51838 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 471-21 chr2 112175926 112176336 + 1.5 NA intron (NM_001128165, intron 4 of 6) intron (NM_001128165, intron 4 of 6) 37746 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 211-13 chr2 161962165 161962339 + 1.5 NA intron (NM_001354443, intron 21 of 25) intron (NM_001354443, intron 21 of 25) 111963 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 346.5-20 chr3 148554607 148555087 + 1.5 NA Intergenic Intergenic -143024 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 356-3 chr10 34016544 34016874 + 1.5 NA Intergenic Intergenic -244029 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 152.5-30 chr9 115809938 115810039 + 1.5 NA Intergenic L1MC4|LINE|L1 -65749 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 216-3 chr11 10216919 10217125 + 1.5 NA intron (NM_030962, intron 1 of 39) HAL1ME|LINE|L1 77185 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 186-3 chr11 72483531 72483764 + 1.5 NA Intergenic MIRb|SINE|MIR -48963 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 325-27 chr6 123149626 123149898 + 1.5 NA Intergenic MIR|SINE|MIR 153527 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 295-36 chr4 44186686 44187179 + 1.5 NA intron (NM_198353, intron 1 of 1) (GTTTT)n|Simple_repeat|Simple_repeat 169870 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 246.5-4 chr1 178243057 178243323 + 1.5 NA intron (NM_170692, intron 1 of 17) L1MDb|LINE|L1 -98261 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 292.5-24 chr5 39139469 39139701 + 1.5 NA intron (NM_001243093, intron 4 of 18) intron (NM_001243093, intron 4 of 18) -65186 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 276-43 chr8 77336169 77336527 + 1.5 NA Intergenic MIR|SINE|MIR -114349 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 253.5-13 chr17 61464600 61464787 + 1.5 NA intron (NM_001321120, intron 3 of 8) intron (NM_001321120, intron 3 of 8) 8205 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 143.5-5 chr10 38529694 38529792 + 1.5 NA Intergenic Intergenic 101597 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 164.5-28 chr8 77168122 77168294 + 1.5 NA Intergenic Intergenic -167164 NM_001172086 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 161 chr1 47247494 47247678 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR -15251 NM_003189 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 302-27 chr6 67944647 67944916 + 1.5 NA Intergenic Intergenic -110570 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 396-6 chr13 53319916 53320207 + 1.5 NA Intergenic Intergenic -168161 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 265.5-25 chr3 169161619 169161961 + 1.5 NA intron (NM_001205194, intron 1 of 15) MLT1F|LTR|ERVL-MaLR -14319 NM_001366467 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 207-20 chr5 25524894 25525203 + 1.5 NA Intergenic MIR|SINE|MIR 334095 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 404-34 chr8 36128279 36128769 + 1.5 NA Intergenic L1MA9|LINE|L1 -418204 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 267.5-11 chr2 42523527 42523732 + 1.5 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) 29060 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 209.5-23 chr20 49179960 49180145 + 1.5 NA intron (NM_004602, intron 1 of 13) intron (NM_004602, intron 1 of 13) 8318 NM_017453 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 229-11 chr13 112811508 112811687 + 1.5 NA intron (NM_032189, intron 5 of 28) intron (NM_032189, intron 5 of 28) -56866 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 241.5-29 chr5 77669316 77669537 + 1.5 NA Intergenic Intergenic -30729 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 424-27 chr9 96771535 96772107 + 1.5 NA intron (NM_001314060, intron 2 of 4) L1ME3|LINE|L1 6266 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 198.5-6 chr13 30623654 30623845 + 1.5 NA intron (NM_001321533, intron 2 of 6) MER21C|LTR|ERVL 5829 NM_001321532 10208 Hs.533831 NM_005800 ENSG00000132952 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 143-6 chr8 130195889 130196006 + 1.5 NA intron (NM_001362925, intron 5 of 29) L2a|LINE|L2 100586 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 316-9 chr12 47052939 47053276 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -26496 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 529-16 chr3 43307545 43307953 + 1.5 NA intron (NM_001100594, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 21209 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 226.5-24 chr7 26178242 26178449 + 1.5 NA intron (NM_004289, intron 2 of 3) intron (NM_004289, intron 2 of 3) 22401 NM_002137 3181 Hs.487774 NM_002137 ENSG00000122566 HNRNPA2B1 HNRNPA2|HNRNPB1|HNRPA2|HNRPA2B1|HNRPB1|IBMPFD2|RNPA2|SNRPB1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding 358-28 chr2 106034293 106034747 + 1.5 NA Intergenic AluSx1|SINE|Alu -31168 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 155-7 chr22 36273627 36273754 + 1.5 NA Intergenic Intergenic 13217 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 653-3 chr14 62106513 62107284 + 1.5 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -10459 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 448-2 chr1 180662278 180662727 + 1.5 NA intron (NR_137330, intron 1 of 12) L1MA3|LINE|L1 30480 NM_001135669 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 521.5-8 chr6 146914221 146914743 + 1.5 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -110658 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 318.5-7 chr14 58714416 58714787 + 1.5 NA Intergenic AluY|SINE|Alu 75764 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 235-22 chr2 159888369 159888631 + 1.5 NA intron (NM_002349, intron 4 of 34) MIR|SINE|MIR 16256 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 265.5-22 chr3 4779269 4779525 + 1.5 NA intron (NM_001168272, intron 47 of 60) intron (NM_001168272, intron 47 of 60) -27807 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 331-3 chr1 66159067 66159490 + 1.5 NA intron (NM_001037340, intron 1 of 14) AluSx3|SINE|Alu -108560 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 398-17 chr2 104584838 104585306 + 1.5 NA Intergenic Intergenic -74563 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 258.5-6 chr14 59083124 59083420 + 1.5 NA Intergenic Intergenic -105395 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 295-35 chr4 31359804 31360089 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie -146598 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 251-34 chr8 65609389 65609667 + 1.5 NA intron (NM_001286702, intron 3 of 5) intron (NM_001286702, intron 3 of 5) 24649 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 324-4 chr1 180434243 180434610 + 1.5 NA intron (NM_032360, intron 3 of 7) MER4D1|LTR|ERV1 3964 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 226.5-6 chr14 27016919 27017159 + 1.5 NA Intergenic MamRep1879|DNA|hAT-Tip100? 108397 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 287.5-26 chr8 36329854 36330046 + 1.5 NA Intergenic AluSq2|SINE|Alu -454424 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 321-9 chr14 58708357 58708752 + 1.5 NA Intergenic Intergenic 69717 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 235-17 chr18 50614630 50614881 + 1.5 NA intron (NM_001292039, intron 1 of 4) Zaphod|DNA|hAT-Tip100 54668 NM_002747 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 303.5-16 chr4 125009177 125009408 + 1.5 NA Intergenic Intergenic -296560 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 168.5-4 chr10 61697944 61698112 + 1.5 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 35067 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 189.5-18 chr3 107386641 107386825 + 1.5 NA Intergenic Intergenic -4574 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 117.5-6 chr12 903053 903191 + 1.5 NA intron (NM_001184985, intron 26 of 27) intron (NM_001184985, intron 26 of 27) 29954 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 253-6 chr14 72062020 72062265 + 1.5 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 128615 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 595.5-10 chr6 161329460 161330128 + 1.5 NA Intergenic MER4A|LTR|ERV1 -55733 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 226-4 chr10 64777296 64777543 + 1.5 NA Intergenic MIRc|SINE|MIR -48109 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 358-27 chr2 71388467 71388750 + 1.5 NA intron (NM_001252613, intron 10 of 27) LTR22E|LTR|ERVK 56826 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 338-28 chr4 89927240 89927542 + 1.5 NA intron (NM_001371403, intron 5 of 8) L1MA2|LINE|L1 32537 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 360-12 chr11 68419841 68420171 + 1.5 NA intron (NM_002335, intron 13 of 22) AluJb|SINE|Alu -40746 NM_001352366 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 203.5-3 chr1 114799543 114799706 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -18939 NM_001102396 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 413-34 chr5 20498994 20499445 + 1.5 NA intron (NM_001349558, intron 1 of 15) MER2|DNA|TcMar-Tigger 76494 NM_001349562 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 362-24 chr3 134240899 134241273 + 1.5 NA intron (NM_001005861, intron 1 of 14) AluSz|SINE|Alu 9658 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 205-14 chr17 30123912 30124139 + 1.5 NA intron (NM_032141, intron 2 of 6) AluJr|SINE|Alu -6865 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 333.5-18 chr5 64999761 65000103 + 1.5 NA intron (NM_005869, intron 13 of 13) L1MA4|LINE|L1 231002 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 293-10 chr15 89395821 89396232 + 1.5 NA non-coding (NR_133001, exon 7 of 7) non-coding (NR_133001, exon 7 of 7) -4145 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 223.5-3 chr1 112528681 112528865 + 1.5 NA 3' UTR (NM_024494, exon 5 of 5) 3' UTR (NM_024494, exon 5 of 5) 19808 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 186-21 chr4 103356697 103356915 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -68236 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 312-23 chr4 93309830 93310178 + 1.5 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -518749 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 186.5-17 chr2 159525936 159526086 + 1.5 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -89283 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 300.5-35 chr6 134992799 134993157 + 1.5 NA intron (NM_006620, intron 8 of 17) Tigger3b|DNA|TcMar-Tigger -13546 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 370-27 chr5 112476826 112477177 + 1.5 NA Intergenic AluJr|SINE|Alu 57418 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 337.5-2 chr11 50453895 50454237 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 44919 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 286.5-5 chr1 235702944 235703355 + 1.5 NA intron (NM_000081, intron 44 of 52) intron (NM_000081, intron 44 of 52) -52395 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 156.5-14 chr2 216006950 216007121 + 1.5 NA intron (NM_018000, intron 1 of 4) intron (NM_018000, intron 1 of 4) 6516 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 204-10 chr13 83088114 83088311 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 794181 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 195-14 chr3 72546880 72547067 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -100350 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 325-5 chr14 69981967 69982346 + 1.5 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 4023 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 200-10 chr15 94559078 94559280 + 1.5 NA Intergenic L2|LINE|L2 203249 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 255.5-3 chr1 194812239 194812529 + 1.5 NA Intergenic Intergenic 1276331 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 188-4 chr11 111543582 111543848 + 1.5 NA intron (NM_001258390, intron 2 of 7) intron (NM_001258390, intron 2 of 7) 3207 NM_178834 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 224-23 chr5 31029176 31029440 + 1.5 NA Intergenic Intergenic -164378 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 426-30 chr3 143350864 143351218 + 1.5 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) 8795 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 376-26 chr6 37294696 37295213 + 1.5 NA intron (NR_130108, intron 8 of 12) Tigger1|DNA|TcMar-Tigger -36799 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 215.5-21 chr2 62054922 62055226 + 1.5 NA intron (NM_001321781, intron 2 of 2) Charlie3|DNA|hAT-Charlie -141041 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 197.5-37 chr7 109980764 109980918 + 1.5 NA Intergenic Intergenic -20628 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 365-25 chr5 158407384 158407705 + 1.5 NA intron (NR_109888, intron 1 of 6) L1ME2|LINE|L1 2229 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 363.5-29 chr7 8021586 8022007 + 1.5 NA intron (NM_138426, intron 2 of 7) intron (NM_138426, intron 2 of 7) 53000 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 452.5-17 chr7 70255686 70256248 + 1.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 657492 NM_015570 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 278-25 chr6 104412885 104413237 + 1.5 NA Intergenic MER39|LTR|ERV1 446485 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 386-15 chr18 7889670 7890196 + 1.5 NA intron (NM_002845, intron 3 of 30) intron (NM_002845, intron 3 of 30) 322617 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 294.5 chr1 18444173 18444482 + 1.5 NA Intergenic Intergenic -36603 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 391-29 chr6 80681208 80681545 + 1.5 NA Intergenic Intergenic 574705 NR_134945 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 261.5-40 chr8 141750140 141750483 + 1.5 NA Intergenic L1ME1|LINE|L1 36002 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 341-6 chr11 121833758 121834323 + 1.5 NA Intergenic L1MA4|LINE|L1 265804 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 853.5-2 chr17 33772941 33773581 + 1.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -239501 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 440.5-3 chr10 5531582 5532012 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -5551 NR_120496 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 156-6 chr11 85109238 85109355 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -185875 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 492.5-14 chr4 36335204 36335632 + 1.5 NA intron (NM_001170700, intron 8 of 9) AluJo|SINE|Alu 53802 NR_160267 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 287-23 chr2 180968152 180968349 + 1.5 NA Intergenic Intergenic -12135 NM_182678 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 258-18 chr3 82414747 82415034 + 1.5 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 428748 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 137.5-5 chr10 62745171 62745297 + 1.5 NA Intergenic LTR16|LTR|ERVL -59486 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 281-16 chr15 76247624 76247880 + 1.5 NA intron (NM_000126, intron 9 of 11) MERX|DNA|TcMar-Tigger 12400 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 330.5-6 chr1 230500976 230501350 + 1.5 NA Intergenic Intergenic -74831 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 449.5-7 chr2 37053316 37053833 + 1.5 NA exon (NM_019024, exon 17 of 36) exon (NM_019024, exon 17 of 36) 30798 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 202.5-2 chr1 43182231 43182423 + 1.5 NA intron (NM_001195831, intron 3 of 23) intron (NM_001195831, intron 3 of 23) -9757 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 398.5-14 chr3 51521166 51521490 + 1.5 NA Intergenic Intergenic -17391 NM_015106 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 312.5-22 chr4 107266616 107267020 + 1.5 NA Intergenic Intergenic -230505 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 189.5-9 chr15 71652316 71652456 + 1.5 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 39153 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 303.5-27 chr8 49207437 49207819 + 1.5 NA Intergenic L1PA10|LINE|L1 135284 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 357.5 chr1 163170164 163170528 + 1.5 NA intron (NM_001254748, intron 2 of 5) L2c|LINE|L2 8671 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 367-19 chr2 216059138 216059461 + 1.5 NA intron (NM_018441, intron 3 of 7) L1MB7|LINE|L1 22510 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 145.5-25 chr5 167968011 167968167 + 1.5 NA intron (NM_001368145, intron 3 of 26) intron (NM_001368145, intron 3 of 26) -197756 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 573.5-10 chr7 27343784 27344340 + 1.5 NA Intergenic Intergenic -96833 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 366.5-10 chr14 77744374 77744821 + 1.5 NA intron (NM_001318844, intron 3 of 12) intron (NM_001318844, intron 3 of 12) -16171 NR_161323 283579 Hs.375834 NM_174943 ENSG00000197734 C14orf178 - chromosome 14 open reading frame 178 ncRNA 136-12 chr8 122715063 122715211 + 1.5 NA Intergenic Intergenic -21031 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 168.5-13 chr19 34707871 34708030 + 1.5 NA Intergenic Intergenic -26293 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 317.5-32 chr6 60711427 60711717 + 1.5 NA Intergenic (AAGGA)n|Simple_repeat|Simple_repeat -862558 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 185 chr10 49155925 49156143 + 1.5 NA 3' UTR (NM_001353331, exon 6 of 6) 3' UTR (NM_001353331, exon 6 of 6) -22014 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 540-2 chr10 27833356 27833991 + 1.5 NA intron (NM_018076, intron 19 of 19) L2b|LINE|L2 -87854 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 200.5-17 chr18 363661 363904 + 1.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -95735 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 219.5-25 chr3 69641851 69642018 + 1.5 NA Intergenic L1PREC2|LINE|L1 -97530 NM_001354608 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 346.5-11 chr2 29002090 29002376 + 1.5 NA intron (NM_001321538, intron 4 of 18) MIRc|SINE|MIR 20935 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 174-21 chr4 44453241 44453438 + 1.5 NA Intergenic Intergenic -4530 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 206.5-24 chr2 204698853 204699054 + 1.5 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 153478 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 307-30 chr4 119094000 119094256 + 1.5 NA Intergenic Intergenic -41656 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 289-21 chr2 10518680 10518878 + 1.5 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 69051 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 317-4 chr1 171002780 171003041 + 1.5 NA intron (NM_001163629, intron 15 of 21) L1PBa1|LINE|L1 67376 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 323-14 chr18 2975730 2976026 + 1.5 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) -29255 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 351-7 chr11 114191071 114191362 + 1.5 NA intron (NM_006006, intron 4 of 6) MSTA|LTR|ERVL-MaLR -104597 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 242-24 chr4 110952136 110952430 + 1.5 NA Intergenic Intergenic -91636 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 162.5-2 chr10 69093313 69093498 + 1.5 NA intron (NM_001321054, intron 1 of 1) MER33|DNA|hAT-Charlie 5302 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 242-26 chr6 10398660 10399000 + 1.5 NA intron (NM_001042425, intron 6 of 6) intron (NM_001042425, intron 6 of 6) -5672 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 486.5-3 chr11 56453504 56454148 + 1.5 NA Intergenic LTR27D|LTR|ERV1 9575 NM_001004743 390162 Hs.553749 NM_001004743 ENSG00000150269 OR5M9 OR11-190 olfactory receptor family 5 subfamily M member 9 protein-coding 288-27 chr3 152025817 152026082 + 1.5 NA Intergenic L1ME4a|LINE|L1 -97774 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 292-29 chr5 17954215 17954524 + 1.5 NA Intergenic Intergenic 147095 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 294.5-22 chr21 45671567 45671978 + 1.5 NA intron (NM_001348238, intron 2 of 16) MER90|LTR|ERV1 2898 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 218.5-29 chr7 55647859 55648105 + 1.5 NA Intergenic Intergenic 40050 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 406-24 chr8 18325566 18325934 + 1.5 NA Intergenic L1ME5|LINE|L1 -65532 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 323.5-11 chr16 3461659 3461952 + 1.5 NA intron (NM_001317095, intron 1 of 5) intron (NM_001317095, intron 1 of 5) 3760 NM_001083600 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15|NatF|hNaa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 211-12 chr17 77522462 77522617 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -4462 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 423.5-11 chr14 45456044 45456494 + 1.5 NA Intergenic L1PA14|LINE|L1 -203067 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 237.5-19 chr5 34033551 34033802 + 1.5 NA intron (NR_037951, intron 2 of 8) L1ME4a|LINE|L1 9537 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 275-21 chr2 58928338 58928583 + 1.5 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -289248 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 290.5-28 chr7 89760182 89760435 + 1.5 NA Intergenic L1MB7|LINE|L1 -359092 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 293.5-3 chr11 81628963 81629210 + 1.5 NA Intergenic Intergenic 261750 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 454.5-15 chr3 174351461 174351858 + 1.5 NA Intergenic L1MC3|LINE|L1 -430863 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 259.5-23 chr21 30470561 30470863 + 1.5 NA Intergenic Intergenic 9655 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 555.5-8 chr9 28683657 28684119 + 1.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 35417 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 345-29 chr4 76710371 76710734 + 1.5 NA intron (NM_020859, intron 3 of 10) Charlie15b|DNA|hAT-Charlie 135001 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 360.5-8 chr18 9497038 9497398 + 1.5 NA intron (NM_006788, intron 1 of 9) MER41B|LTR|ERV1 21705 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 116.5-10 chr3 67134153 67134317 + 1.5 NA Intergenic MIR|SINE|MIR -91229 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 248.5-24 chr5 132382870 132383175 + 1.5 NA intron (NM_003060, intron 2 of 9) L1ME3B|LINE|L1 -13106 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 272.5-18 chr2 24493588 24493841 + 1.5 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 1837 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 511.5-7 chr12 2880378 2880988 + 1.5 NA intron (NR_027365, intron 1 of 1) AluJr|SINE|Alu 3460 NM_001252500 83695 Hs.198853 NM_001252499 ENSG00000171792 RHNO1 C12orf32|HKMT1188|RHINO RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding 224.5-23 chr3 108423922 108424114 + 1.5 NA intron (NM_014981, intron 28 of 41) intron (NM_014981, intron 28 of 41) 105304 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 265.5-29 chr5 26041541 26041893 + 1.5 NA Intergenic L1M2a1|LINE|L1 850764 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 294.5-14 chr17 14229023 14229391 + 1.5 NA Intergenic Intergenic 7655 NM_001348781 146822 Hs.447556 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 187-7 chr14 84859731 84859855 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -412139 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 307.5-7 chr11 107798168 107798595 + 1.5 NA intron (NM_017515, intron 7 of 7) intron (NM_017515, intron 7 of 7) 60406 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 213-3 chr1 186379888 186380121 + 1.5 NA intron (NM_001164246, intron 2 of 12) intron (NM_001164246, intron 2 of 12) 4166 NM_017847 54953 Hs.371210 NM_017847 ENSG00000157181 ODR4 C1orf27|TTG1|odr-4 odr-4 GPCR localization factor homolog protein-coding 274-7 chr11 5192693 5192958 + 1.5 NA Intergenic L1MC2|LINE|L1 7875 NM_001004760 283111 Hs.553670 NM_001004760 ENSG00000176742 OR51V1 OR11-36|OR51A12 olfactory receptor family 51 subfamily V member 1 protein-coding 321-22 chr5 157562534 157562800 + 1.5 NA intron (NM_033274, intron 3 of 22) MIR3|SINE|MIR 13108 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 457-16 chr3 50626569 50627166 + 1.5 NA intron (NM_004635, intron 2 of 10) intron (NM_004635, intron 2 of 10) 9716 NM_001243925 7867 Hs.234521 NM_004635 ENSG00000114738 MAPKAPK3 3PK|MAPKAP-K3|MAPKAP3|MAPKAPK-3|MDPT3|MK-3 MAPK activated protein kinase 3 protein-coding 320-23 chr5 179129894 179130183 + 1.5 NA exon (NM_014244, exon 16 of 22) exon (NM_014244, exon 16 of 22) 69665 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 353-33 chr5 161473264 161473724 + 1.5 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 74630 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 344-15 chr15 54957811 54958123 + 1.5 NA Intergenic Intergenic -98780 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 488-5 chr17 34019730 34020137 + 1.5 NA intron (NM_001094, intron 1 of 9) MLT1H|LTR|ERVL-MaLR 136873 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 205.5-16 chr4 52610938 52611182 + 1.5 NA intron (NM_001286768, intron 5 of 9) intron (NM_001286768, intron 5 of 9) 45479 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 206.5-14 chr14 54200461 54200687 + 1.5 NA Intergenic L1PA16|LINE|L1 -196294 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 222-18 chr2 201511016 201511283 + 1.5 NA intron (NM_001168216, intron 11 of 12) L1ME3G|LINE|L1 59409 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 193-21 chr7 13077160 13077440 + 1.5 NA Intergenic Intergenic 389667 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 333.5-13 chr21 29493435 29493796 + 1.5 NA Intergenic Intergenic -2432 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 310-8 chr12 16189221 16189432 + 1.5 NA 3' UTR (NM_001170798, exon 9 of 9) 3' UTR (NM_001170798, exon 9 of 9) 88359 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 287.5-30 chr9 103429193 103429565 + 1.5 NA Intergenic Intergenic -104346 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 195.5-27 chr5 157891841 157892092 + 1.5 NA Intergenic MamRep4096|DNA|hAT-Tip100 -32821 NM_001195555 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 254 chr1 92970818 92971145 + 1.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -9459 NM_001252273 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 254-21 chr22 49814744 49814964 + 1.5 NA intron (NM_001304809, intron 2 of 12) intron (NM_001304809, intron 2 of 12) 9477 NR_146335 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 320-19 chr3 48982203 48982600 + 1.5 NA intron (NM_001349209, intron 14 of 15) L1M5|LINE|L1 -7507 NM_177938 54681 Hs.654944 NM_017732 ENSG00000178467 P4HTM EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4 prolyl 4-hydroxylase, transmembrane protein-coding 196-13 chr5 100325364 100325689 + 1.5 NA Intergenic MIR|SINE|MIR 62728 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 356.5-33 chr6 72304212 72304689 + 1.5 NA intron (NM_001350414, intron 17 of 24) intron (NM_001350414, intron 17 of 24) -62296 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 247-30 chr9 27457447 27457785 + 1.5 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -66698 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 265.5-34 chr6 34061179 34061566 + 1.5 NA intron (NM_000841, intron 4 of 10) intron (NM_000841, intron 4 of 10) 44595 NM_001256813 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 163.5-6 chr2 18590285 18590464 + 1.5 NA promoter-TSS (NM_001199103) promoter-TSS (NM_001199103) -794 NM_001199103 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 196-5 chr14 43748201 43748357 + 1.5 NA Intergenic L1PB4|LINE|L1 759004 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 170.5-20 chr5 5586715 5586850 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 164105 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 840 chr13 86201834 86202729 + 1.5 NA Intergenic Intergenic -402862 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 610-19 chrX 23738737 23739569 + 1.5 NA intron (NM_001037171, intron 1 of 15) AluSx1|SINE|Alu 4123 NM_001033583 23597 Hs.298885 NM_001033583 ENSG00000123130 ACOT9 ACATE2|CGI-16|MT-ACT48|MTACT48 acyl-CoA thioesterase 9 protein-coding 271-2 chr10 32569100 32569435 + 1.5 NA intron (NR_109826, intron 15 of 16) intron (NR_109826, intron 15 of 16) 123127 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 260-26 chr4 145650804 145650977 + 1.5 NA intron (NM_172250, intron 4 of 6) L2c|LINE|L2 -29314 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 341-18 chr2 111025645 111025940 + 1.5 NA intron (NM_001371254, intron 15 of 18) L1ME1|LINE|L1 89796 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 240.5-25 chr7 25756519 25756815 + 1.5 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -5635 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 167-10 chr4 100857299 100857543 + 1.5 NA Intergenic L1ME1|LINE|L1 -182308 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 222.5-13 chr2 148174981 148175263 + 1.5 NA intron (NM_018328, intron 2 of 14) L1MA7|LINE|L1 -153518 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 267-27 chr3 30841228 30841577 + 1.5 NA intron (NM_207359, intron 8 of 14) L1MC5a|LINE|L1 53259 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 491.5-15 chr4 44028762 44029211 + 1.5 NA Intergenic L1MA4A|LINE|L1 11924 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 428.5-6 chr12 15287975 15288370 + 1.5 NA Intergenic L1MEc|LINE|L1 -34336 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 398-11 chr15 84897359 84897750 + 1.5 NA intron (NM_001287761, intron 5 of 14) L1MA4|LINE|L1 12892 NM_001321721 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 250.5-20 chr2 164607389 164607600 + 1.5 NA intron (NM_004490, intron 2 of 13) L2a|LINE|L2 13988 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 180-3 chr14 21434439 21434630 + 1.5 NA intron (NM_001170629, intron 1 of 37) intron (NM_001170629, intron 1 of 37) 2741 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 169.5-9 chr2 89836732 89836878 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198898 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 309-33 chr5 20630378 20630653 + 1.5 NA intron (NR_149120, intron 1 of 11) MER20|DNA|hAT-Charlie -14980 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 298-17 chr4 61145134 61145501 + 1.5 NA intron (NR_147148, intron 2 of 3) intron (NR_147148, intron 2 of 3) 1661 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 283-6 chr10 20808845 20809068 + 1.5 NA intron (NM_006393, intron 25 of 27) intron (NM_006393, intron 25 of 27) 88646 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 237.5-10 chr2 57632239 57632459 + 1.5 NA Intergenic Intergenic -275302 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 487.5-10 chr14 76927562 76928133 + 1.5 NA Intergenic AluSz|SINE|Alu -31791 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 339.5-4 chr10 56424653 56425110 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -63608 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 382-8 chr13 58468523 58468827 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -235558 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 203.5-30 chr7 93881109 93881275 + 1.5 NA Intergenic L1MA9|LINE|L1 9561 NM_001271003 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 267-15 chr18 2850022 2850319 + 1.5 NA intron (NM_032048, intron 2 of 7) AluSx|SINE|Alu 3164 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 198-15 chr3 17273832 17274057 + 1.5 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 340748 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 198.5-24 chr7 50921235 50921472 + 1.5 NA Intergenic Intergenic -127900 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 311-19 chr2 191684566 191684886 + 1.5 NA intron (NR_045623, intron 6 of 6) intron (NR_045623, intron 6 of 6) -5455 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 258-8 chr17 71531042 71531240 + 1.5 NA Intergenic Intergenic -328962 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 418.5-20 chr4 41435510 41435907 + 1.5 NA intron (NM_001289122, intron 1 of 25) MIRb|SINE|MIR 74901 NM_014988 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 183-21 chr7 93948203 93948441 + 1.5 NA Intergenic L2|LINE|L2 26587 NM_004126 2791 Hs.83381 NM_004126 ENSG00000127920 GNG11 GNGT11 G protein subunit gamma 11 protein-coding 368.5-7 chr10 67081690 67082122 + 1.5 NA intron (NR_111909, intron 2 of 2) L2c|LINE|L2 69640 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 142-8 chr5 13587837 13588031 + 1.5 NA Intergenic L1M5|LINE|L1 356546 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 276-32 chr3 133755454 133755681 + 1.5 NA intron (NM_001063, intron 5 of 16) intron (NM_001063, intron 5 of 16) 9174 NM_001063 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 294-31 chr5 87299905 87300261 + 1.5 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 23545 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 186.5-30 chr8 101923547 101923709 + 1.5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -60804 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 354.5-5 chr10 18594340 18594724 + 1.5 NA intron (NM_182543, intron 7 of 10) AluSc|SINE|Alu 57055 NM_001351118 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 205.5-15 chr4 33226700 33226929 + 1.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 813079 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 284.5-27 chr4 46301830 46302061 + 1.5 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 87434 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 512-14 chr4 80765482 80766128 + 1.5 NA intron (NM_001206997, intron 4 of 6) L1MEd|LINE|L1 -264903 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 302.5-12 chr12 119467378 119467638 + 1.5 NA intron (NM_178499, intron 2 of 13) MLT1A|LTR|ERVL-MaLR -126266 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 225.5-38 chrX 41044576 41044787 + 1.5 NA Intergenic L1MEc|LINE|L1 -40764 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 229-2 chr1 210492281 210492546 + 1.5 NA intron (NM_001122834, intron 8 of 11) L2c|LINE|L2 163047 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 177.5-23 chr5 55870098 55870388 + 1.5 NA intron (NM_001242636, intron 3 of 14) MER58B|DNA|hAT-Charlie 16921 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 190.5 chr10 24174540 24174795 + 1.5 NA intron (NM_001098500, intron 2 of 18) MLT1C|LTR|ERVL-MaLR -34124 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 133-4 chr18 68323867 68324031 + 1.5 NA Intergenic Intergenic 391159 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 158.5-6 chr14 63649752 63649936 + 1.5 NA Intergenic LTR23|LTR|ERV1 -7973 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 283.5-20 chr20 55454410 55454851 + 1.5 NA Intergenic HAL1ME|LINE|L1 -27433 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 399.5-26 chr7 90951339 90951658 + 1.5 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 241682 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 454.5-32 chr9 36746905 36747277 + 1.5 NA Intergenic Intergenic 76508 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 474-16 chr20 47723516 47724018 + 1.5 NA intron (NM_198596, intron 3 of 20) MER1A|DNA|hAT-Charlie 62297 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 375.5-13 chr2 54445163 54445413 + 1.5 NA Intergenic AluSx3|SINE|Alu -11039 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 550.5 chr1 94202478 94202962 + 1.5 NA exon (NM_001328667, exon 10 of 22) exon (NM_001328667, exon 10 of 22) 34864 NM_001328666 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 345.5-21 chr20 59125102 59125516 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -65711 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 393.5-4 chr10 126049472 126049916 + 1.5 NA intron (NM_001288974, intron 14 of 18) intron (NM_001288974, intron 14 of 18) -76421 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 328-6 chr10 72057317 72057727 + 1.5 NA Intergenic Intergenic 31029 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 346.5-2 chr1 168234566 168234988 + 1.5 NA intron (NM_199344, intron 3 of 7) intron (NM_199344, intron 3 of 7) 8773 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 325-34 chr8 103047750 103048133 + 1.5 NA intron (NM_001695, intron 3 of 12) intron (NM_001695, intron 3 of 12) 26858 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 362.5-2 chr10 17317333 17317652 + 1.5 NA non-coding (NR_144322, exon 7 of 7) non-coding (NR_144322, exon 7 of 7) -69444 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 205-5 chr10 96089689 96089866 + 1.5 NA intron (NR_134322, intron 1 of 3) intron (NR_134322, intron 1 of 3) 458 NR_134322 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 158-3 chr11 82914647 82914826 + 1.5 NA 5' UTR (NM_145018, exon 3 of 6) 5' UTR (NM_145018, exon 3 of 6) -12996 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 284.5-20 chr16 62724063 62724296 + 1.5 NA Intergenic Intergenic -687741 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 297.5-21 chr2 205627021 205627287 + 1.5 NA Intergenic Intergenic -55346 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 375.5-15 chr2 120851743 120852209 + 1.5 NA intron (NM_005270, intron 2 of 13) L2a|LINE|L2 59695 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 181-22 chr9 18333724 18333969 + 1.5 NA Intergenic Intergenic -140307 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 324-44 chr9 102265222 102265585 + 1.5 NA Intergenic Intergenic -254234 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 194-9 chr2 125103861 125104062 + 1.5 NA Intergenic L1MC3|LINE|L1 1014024 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 166.5-12 chr2 122623424 122623576 + 1.5 NA Intergenic L1MEi|LINE|L1 449981 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 198-10 chr2 47340383 47340664 + 1.5 NA intron (NR_110208, intron 1 of 4) intron (NR_110208, intron 1 of 4) 4551 NR_110208 101927043 Hs.515976 NR_110207 ENSG00000234690 EPCAM-DT - EPCAM divergent transcript ncRNA 161.5-11 chr2 5804633 5804789 + 1.5 NA Intergenic Intergenic 7885 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 227.5-15 chr3 151554393 151554626 + 1.5 NA Intergenic Zaphod|DNA|hAT-Tip100 11486 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 252.5-31 chrX 78914419 78914629 + 1.5 NA Intergenic L1MB3|LINE|L1 -13275 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 371.5-10 chr15 100877051 100877378 + 1.5 NA TTS (NR_160703) TTS (NR_160703) -2617 NM_000693 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 132.5-14 chr21 27047478 27047579 + 1.5 NA Intergenic Intergenic -80440 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 323-17 chr2 9902490 9902760 + 1.5 NA intron (NM_001318977, intron 7 of 13) L1ME3A|LINE|L1 -49068 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 307-21 chr20 43767419 43767688 + 1.5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -40551 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 219.5-12 chr16 2835302 2835519 + 1.5 NA Intergenic AluJo|SINE|Alu 5238 NM_145252 124220 Hs.105887 NM_145252 ENSG00000162078 ZG16B EECP|HRPE773|JCLN2|PAUF|PRO1567 zymogen granule protein 16B protein-coding 305-43 chr6 69715183 69715430 + 1.5 NA intron (NM_001367272, intron 8 of 15) intron (NM_001367272, intron 8 of 15) 81160 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 553-11 chr5 120899951 120900600 + 1.5 NA Intergenic Tigger18a|DNA|TcMar-Tigger 368811 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 575-14 chr7 9873872 9874385 + 1.5 NA Intergenic Intergenic 239858 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 211-16 chr22 49622611 49622784 + 1.5 NA intron (NM_001289922, intron 5 of 5) intron (NM_001289922, intron 5 of 5) 34822 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 225-21 chr2 74985503 74985852 + 1.5 NA Intergenic L1ME4b|LINE|L1 27034 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 221-24 chr5 117172332 117172566 + 1.5 NA Intergenic Intergenic -243063 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 232-16 chr17 75544977 75545193 + 1.5 NA intron (NM_001015002, intron 2 of 9) intron (NM_001015002, intron 2 of 9) 19383 NM_001015002 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL scribble cell polarity complex component 2 protein-coding 439.5-22 chr5 8492753 8493188 + 1.5 NA Intergenic MER4D1|LTR|ERV1 32045 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 270-29 chr6 144922026 144922339 + 1.5 NA Intergenic MER53|DNA|hAT 516527 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 215-13 chr15 67675120 67675354 + 1.5 NA intron (NM_001206804, intron 13 of 21) L1MD1|LINE|L1 126143 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 497.5 chr1 28562096 28562683 + 1.5 NA intron (NM_017846, intron 4 of 8) intron (NM_017846, intron 4 of 8) 9304 NM_017846 54952 Hs.533626 NM_017846 ENSG00000180098 TRNAU1AP PRO1902|SECP43|TRSPAP1 tRNA selenocysteine 1 associated protein 1 protein-coding 360-44 chr8 86742231 86742638 + 1.5 NA intron (NM_019098, intron 1 of 17) intron (NM_019098, intron 1 of 17) 1241 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 343-19 chr3 17991539 17991878 + 1.5 NA intron (NR_161333, intron 1 of 4) intron (NR_161333, intron 1 of 4) 29156 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 202-9 chr2 48462924 48463085 + 1.5 NA intron (NR_024188, intron 7 of 21) intron (NR_024188, intron 7 of 21) 22235 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 212-9 chr16 72253615 72253904 + 1.5 NA Intergenic Intergenic -81309 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 310-10 chr14 57823903 57824388 + 1.5 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 40854 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 301.5-25 chr9 82084971 82085263 + 1.5 NA Intergenic Mam_R4|LINE|Dong-R4 96345 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 311-31 chr8 123967192 123967491 + 1.5 NA intron (NM_001039112, intron 5 of 40) L1ME4b|LINE|L1 73441 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 214.5-41 chrX 145659072 145659231 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -158678 NM_001144004 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 346.5 chr1 158486853 158487221 + 1.5 NA Intergenic Intergenic 7159 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 264-26 chr7 32608222 32608544 + 1.5 NA intron (NR_036680, intron 12 of 16) L1PA15|LINE|L1 110785 NR_036680 100129460 Hs.633705 NR_036680 DPY19L1P1 - DPY19L1 pseudogene 1 pseudo 498.5-4 chr13 105774423 105774873 + 1.5 NA Intergenic Intergenic 67818 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 314-9 chr14 46074408 46074686 + 1.5 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 10388 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 339.5-23 chr6 49267273 49267547 + 1.5 NA Intergenic Intergenic 195843 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 337.5-6 chr12 123772215 123772512 + 1.5 NA intron (NM_207437, intron 3 of 77) MER77|LTR|ERVL 9868 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 222-8 chr14 59546214 59546453 + 1.5 NA intron (NM_001164399, intron 8 of 19) L1PA17|LINE|L1 30479 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 251-30 chr6 74411000 74411351 + 1.5 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 341724 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 452.5-7 chr17 49604148 49604711 + 1.5 NA intron (NM_001007230, intron 10 of 11) intron (NM_001007230, intron 10 of 11) 22160 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 219-15 chr14 62252980 62253182 + 1.5 NA Intergenic Intergenic -113108 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 145.5-16 chr2 133235466 133235636 + 1.5 NA intron (NM_207481, intron 4 of 17) AluJb|SINE|Alu -30644 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 434-10 chr2 143305983 143306318 + 1.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 176731 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 277.5-26 chr5 68394516 68394790 + 1.5 NA Intergenic Intergenic 102076 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 434.5-7 chr14 63190126 63190519 + 1.5 NA Intergenic MIR|SINE|MIR -14121 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 127-6 chr3 31210520 31210649 + 1.5 NA Intergenic L3|LINE|CR1 -48797 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 176.5-19 chr3 140169672 140169886 + 1.5 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 234594 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 392-17 chr18 47215835 47216412 + 1.5 NA intron (NM_001278063, intron 7 of 8) intron (NM_001278063, intron 7 of 8) 35537 NM_001278063 652991 Hs.585834 NM_001037802 ENSG00000215474 SKOR2 CH18515|CORL2|FUSSEL18 SKI family transcriptional corepressor 2 protein-coding 128.5-5 chr1 201292747 201292858 + 1.5 NA intron (NM_001005337, intron 1 of 13) intron (NM_001005337, intron 1 of 13) 9296 NM_001005337 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 326.5-33 chr7 133388010 133388227 + 1.5 NA intron (NM_021807, intron 7 of 17) L1MC5|LINE|L1 97237 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 272.5-21 chr2 46282059 46282331 + 1.5 NA Intergenic Intergenic -15212 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 457.5-30 chr8 119756371 119756898 + 1.5 NA intron (NM_003184, intron 21 of 25) intron (NM_003184, intron 21 of 25) 76207 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 179-22 chr8 131189875 131190084 + 1.5 NA Intergenic Intergenic -149070 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 141-4 chr2 60303436 60303603 + 1.5 NA Intergenic Intergenic 79517 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 203.5-38 chr9 99046083 99046314 + 1.5 NA intron (NM_001855, intron 26 of 41) MER91B|DNA|hAT-Tip100 -58915 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 269-3 chr1 225620991 225621183 + 1.5 NA intron (NM_001008493, intron 1 of 14) intron (NM_001008493, intron 1 of 14) 32036 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 177-4 chr12 78378884 78379053 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -19222 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 123 chr1 147299132 147299241 + 1.5 NA Intergenic L1MA8|LINE|L1 56044 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 216-21 chr4 40225341 40225495 + 1.5 NA intron (NM_001278360, intron 2 of 3) intron (NM_001278360, intron 2 of 3) 28387 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 137.5-25 chr9 28276734 28276934 + 1.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 442471 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 256.5-12 chr16 57910921 57911157 + 1.5 NA intron (NM_001297, intron 25 of 32) intron (NM_001297, intron 25 of 32) 60089 NM_001286130 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 297.5-15 chr17 55453866 55454127 + 1.5 NA Intergenic Intergenic -32161 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 256-30 chr7 67615157 67615430 + 1.5 NA Intergenic Intergenic 279317 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 279.5-23 chr9 80794441 80794681 + 1.5 NA Intergenic Intergenic 819538 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 191-10 chr4 185711314 185711563 + 1.5 NA intron (NM_001145672, intron 1 of 20) intron (NM_001145672, intron 1 of 20) -54469 NM_001145674 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 564-13 chr2 34122439 34123159 + 1.5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 55573 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 563-4 chr14 70659401 70659958 + 1.5 NA intron (NM_015351, intron 1 of 2) intron (NM_015351, intron 1 of 2) 17763 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 559-13 chr2 158099947 158100474 + 1.5 NA intron (NM_001135098, intron 2 of 8) intron (NM_001135098, intron 2 of 8) -1660 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 233.5-31 chr7 89040049 89040209 + 1.5 NA intron (NM_181646, intron 1 of 3) L1MA9|LINE|L1 -244392 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 353.5-5 chr10 84817088 84817526 + 1.5 NA Intergenic L1PA15|LINE|L1 381598 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 113.5-11 chr6 85472350 85472462 + 1.5 NA intron (NM_002526, intron 3 of 8) L1ME4a|LINE|L1 22323 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 538.5-20 chr7 46752776 46753316 + 1.5 NA Intergenic Intergenic -55924 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 348-10 chr13 45251466 45251815 + 1.5 NA intron (NM_004128, intron 5 of 7) L1MEd|LINE|L1 -50595 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 508.5-12 chr21 16903117 16903536 + 1.5 NA Intergenic LTR40a|LTR|ERVL 313089 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 282.5-17 chr17 75955715 75956053 + 1.5 NA exon (NM_007292, exon 5 of 14) exon (NM_007292, exon 5 of 14) -17652 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 295-45 chr8_KI270819v1_alt 84803 85034 + 1.5 NA intron (NM_032611, intron 1 of 5).2 intron (NM_032611, intron 1 of 5).2 -8926 NM_007079 11156 Hs.43666 NM_007079 ENSG00000184489 PTP4A3 PRL-3|PRL-R|PRL3 protein tyrosine phosphatase 4A3 protein-coding 404-30 chr5 85420329 85420743 + 1.5 NA Intergenic Intergenic -861908 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 297.5-26 chr4 55332537 55332921 + 1.5 NA Intergenic L1ME3|LINE|L1 -13513 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 410-4 chr11 110514534 110514989 + 1.5 NA Intergenic AluSx|SINE|Alu 84813 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 307.5-12 chr15 53149163 53149404 + 1.5 NA Intergenic Intergenic 32918 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 242.5-7 chr15 41964836 41965264 + 1.5 NA intron (NM_139265, intron 1 of 5) AluJb|SINE|Alu 7507 NM_139265 30844 Hs.143703 NM_139265 ENSG00000103966 EHD4 PAST4 EH domain containing 4 protein-coding 191-12 chr7 116907917 116908201 + 1.5 NA intron (NM_006136, intron 6 of 9) AluJr|SINE|Alu -45442 NM_018412 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 210.5-8 chr14 76583025 76583214 + 1.5 NA Intergenic MIRb|SINE|MIR -178349 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 275.5-27 chr4 73254223 73254565 + 1.5 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 4404 NM_032217 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 134.5-10 chr2 109244657 109244790 + 1.5 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 68902 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 453-20 chr3 5398808 5399288 + 1.5 NA Intergenic AluJr|SINE|Alu -148793 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 253.5-12 chr17 20160991 20161266 + 1.5 NA intron (NM_001033554, intron 1 of 5) AluSx1|SINE|Alu 5056 NM_001033555 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 141-5 chr22 29118059 29118203 + 1.5 NA intron (NM_001039570, intron 3 of 8) MLT1F2|LTR|ERVL-MaLR 45096 NM_032045 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 455.5-7 chr15 72256367 72256897 + 1.5 NA intron (NR_136599, intron 13 of 22) intron (NR_136599, intron 13 of 22) 15922 NM_001323531 56965 Hs.270244 NM_020213 ENSG00000137817 PARP6 ARTD17|PARP-6-B1|PARP-6-C|pART17 poly(ADP-ribose) polymerase family member 6 protein-coding 223.5-36 chr7 39698443 39698626 + 1.5 NA intron (NM_005402, intron 4 of 4) intron (NM_005402, intron 4 of 4) -35034 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 288.5-28 chr3 17387482 17387946 + 1.5 NA intron (NM_014744, intron 8 of 21) Tigger19a|DNA|TcMar-Tigger 312306 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 225-5 chr10 80768539 80768727 + 1.5 NA Intergenic L1ME4c|LINE|L1 118836 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 547.5-7 chr22 28300305 28300742 + 1.5 NA intron (NM_001145418, intron 3 of 22) intron (NM_001145418, intron 3 of 22) -159346 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 401.5-14 chr2 46391611 46392097 + 1.5 NA TTS (NR_146999) TTS (NR_146999) 2313 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 301-14 chr12 74798635 74799024 + 1.5 NA Intergenic L1MA4|LINE|L1 260994 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 173.5-25 chr8 106333392 106333636 + 1.5 NA intron (NM_018002, intron 1 of 15) L1MB7|LINE|L1 63336 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 280-24 chr3 22480751 22481099 + 1.5 NA Intergenic MIR|SINE|MIR 523786 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 512.5 chr11 38781778 38782419 + 1.5 NA Intergenic AluY|SINE|Alu 133240 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 394-18 chr3 111669764 111670127 + 1.5 NA Intergenic Intergenic -4731 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 275-29 chr5 17827361 17827686 + 1.5 NA intron (NR_134286, intron 2 of 7) intron (NR_134286, intron 2 of 7) 20249 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 269.5-7 chr11 82615263 82615636 + 1.5 NA Intergenic Intergenic 118415 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 253-35 chr7 153265704 153265872 + 1.5 NA Intergenic L1M5|LINE|L1 146446 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 234-2 chr1 181663212 181663538 + 1.5 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 179858 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 229.5-24 chr3 38473515 38473823 + 1.5 NA intron (NM_001106, intron 1 of 10) intron (NM_001106, intron 1 of 10) -18849 NR_028389 100128640 Hs.570596 NR_028389 ENSG00000229589 ACVR2B-AS1 - ACVR2B antisense RNA 1 ncRNA 201.5-13 chr16 52052762 52053001 + 1.5 NA intron (NM_001242473, intron 2 of 5) intron (NM_001242473, intron 2 of 5) 21054 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 205-10 chr13 71763263 71763428 + 1.5 NA intron (NM_080759, intron 1 of 10) MIR|SINE|MIR 103847 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 298-33 chr8 140875096 140875529 + 1.5 NA intron (NM_001352737, intron 3 of 32) intron (NM_001352737, intron 3 of 32) 125692 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 233-30 chr8 116812001 116812160 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 45556 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 214.5-38 chr9 23739314 23739576 + 1.5 NA intron (NM_004432, intron 2 of 6) intron (NM_004432, intron 2 of 6) -67046 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 326.5-15 chr15 70513706 70513999 + 1.5 NA Intergenic LTR85c|LTR|Gypsy? -7924 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 234.5-17 chr2 118354418 118354608 + 1.5 NA Intergenic Kanga1|DNA|TcMar-Tc2 -168127 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 214.5-26 chr5 116809749 116809915 + 1.5 NA Intergenic Intergenic -47623 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 170.5-6 chr10 125570404 125570546 + 1.5 NA Intergenic Zaphod|DNA|hAT-Tip100 -3896 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 389-22 chr2 132672836 132673259 + 1.5 NA 3' UTR (NM_207363, exon 20 of 20) 3' UTR (NM_207363, exon 20 of 20) -1521 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 149-4 chr2 17502601 17502806 + 1.5 NA Intergenic L1MC2|LINE|L1 15737 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 362.5-26 chr5 166420042 166420372 + 1.5 NA Intergenic Intergenic 506163 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 315.5-15 chr19 13874896 13875317 + 1.5 NA TTS (NR_030179) TTS (NR_030179) 231 NR_030179 574457 NR_030179 ENSG00000207585 MIR181D MIRN181D|mir-181d microRNA 181d ncRNA 439-19 chr7 83507903 83508236 + 1.5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 133362 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 225-33 chr7 48072808 48072999 + 1.5 NA Intergenic L1MD2|LINE|L1 -15700 NM_001362774 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 379-16 chr16 55687579 55688199 + 1.5 NA intron (NM_001172504, intron 4 of 13) LTR79|LTR|ERVL 16218 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 388.5-11 chr20 25958526 25958786 + 1.5 NA intron (NR_110003, intron 2 of 3) L1M2|LINE|L1 2844 NR_110003 101926955 Hs.625431 NR_110003 ENSG00000226203 LINC01733 - long intergenic non-protein coding RNA 1733 ncRNA 222.5-21 chr4 86692376 86692634 + 1.5 NA intron (NM_080685, intron 5 of 47) intron (NM_080685, intron 5 of 47) 98190 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 494.5-18 chr8 121443010 121443526 + 1.5 NA Intergenic Intergenic -196078 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 334 chr1 40378300 40378654 + 1.5 NA intron (NM_001198978, intron 1 of 9) intron (NM_001198978, intron 1 of 9) 3844 NM_001198978 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 308.5-22 chr3 94793670 94793875 + 1.5 NA Intergenic L2b|LINE|L2 -144491 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 557.5-4 chr14 65528364 65528754 + 1.5 NA intron (NM_004480, intron 2 of 9) L1PA5|LINE|L1 57457 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 631-9 chr20 59816690 59817343 + 1.5 NA intron (NM_080672, intron 8 of 12) intron (NM_080672, intron 8 of 12) 95806 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 542-10 chr15 36138279 36138913 + 1.5 NA Intergenic L1PA11|LINE|L1 211740 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 202-25 chr7 128153508 128153740 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -54248 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 418.5-10 chr13 55864780 55865220 + 1.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 690546 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 178.5-21 chr7 7973540 7973784 + 1.5 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 4866 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 162-12 chr9 124059597 124059742 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 47901 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 240-27 chr2 165358525 165358718 + 1.5 NA intron (NM_001040143, intron 18 of 27) intron (NM_001040143, intron 18 of 27) 64566 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 254.5-3 chr10 31393304 31393585 + 1.5 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) 6311 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 555-23 chr5 122983870 122984649 + 1.5 NA intron (NM_014035, intron 3 of 6) intron (NM_014035, intron 3 of 6) 52466 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 183-20 chr6 146189453 146189707 + 1.5 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 160382 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 203.5-6 chr10 102165667 102165902 + 1.5 NA Intergenic L1ME4b|LINE|L1 13395 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 189.5-25 chr7 28296389 28296515 + 1.5 NA Intergenic L1M5|LINE|L1 -2869 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 143.5-15 chr3 184652616 184652776 + 1.5 NA Intergenic Intergenic 59368 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 184.5-9 chr16 25695662 25695800 + 1.5 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 3772 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 147-3 chr18 34573839 34574006 + 1.5 NA intron (NM_001198945, intron 1 of 10) L1MA8|LINE|L1 -19413 NM_001128175 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 330-4 chr10 9964578 9964857 + 1.5 NA Intergenic Intergenic -94005 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 192-20 chr5 7709478 7709714 + 1.5 NA intron (NM_020546, intron 10 of 24) intron (NM_020546, intron 10 of 24) 141537 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 221.5-17 chr4 62191493 62191762 + 1.5 NA Intergenic Intergenic -29862 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 415-15 chr15 64078131 64078562 + 1.5 NA intron (NM_001014812, intron 2 of 3) L2c|LINE|L2 15492 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 318.5-23 chr4 96432541 96432978 + 1.5 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 122056 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 356-25 chr2 203875232 203875620 + 1.5 NA Intergenic Intergenic 7655 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 300.5-30 chr3 72488998 72489370 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -42561 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 325.5-5 chr10 72696696 72697044 + 1.5 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 4251 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 157.5-22 chr5 68591408 68591545 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie 298899 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 264.5-7 chr10 80833690 80833974 + 1.5 NA Intergenic L1M1|LINE|L1 184035 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 390.5-32 chr8 135080724 135081136 + 1.5 NA Intergenic Intergenic -153201 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 367-5 chr1 179832031 179832609 + 1.5 NA Intergenic Intergenic 28396 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 427.5-7 chr13 59755165 59755735 + 1.5 NA intron (NM_001258366, intron 26 of 26) Plat_L3|LINE|CR1 -257268 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 358-29 chr2 140026707 140027086 + 1.5 NA Intergenic Intergenic 559789 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 212.5-21 chr21 27038184 27038325 + 1.5 NA Intergenic Intergenic -71166 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 386-2 chr1 43509965 43510513 + 1.5 NA Intergenic MamGyp-int|LTR|Gypsy -15798 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 362-5 chr10 10258885 10259126 + 1.5 NA Intergenic LTR41|LTR|ERVL 200283 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 212-10 chr17 78664551 78664692 + 1.5 NA Intergenic Intergenic -32564 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 484.5-14 chr20 8956119 8956560 + 1.5 NA Intergenic Intergenic -112715 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 166-7 chr20 42162550 42162755 + 1.5 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -522831 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 281-36 chr7 6181648 6181967 + 1.5 NA intron (NM_001367581, intron 4 of 13) intron (NM_001367581, intron 4 of 13) -9670 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 233.5-38 chr8 126808638 126808859 + 1.5 NA Intergenic L1MA4|LINE|L1 -204406 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 134.5-3 chr10 18104832 18104941 + 1.5 NA Intergenic Intergenic -35538 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 254-18 chr2 218288512 218288712 + 1.5 NA intron (NM_001321436, intron 1 of 12) Tigger4a|DNA|TcMar-Tigger -1309 NM_001321429 64114 Hs.591605 NM_022152 ENSG00000135926 TMBIM1 LFG3|MST100|MSTP100|PP1201|RECS1 transmembrane BAX inhibitor motif containing 1 protein-coding 249-33 chr8 15090014 15090202 + 1.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 148323 NM_139167 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 265-19 chr2 25062093 25062269 + 1.5 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 19718 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 296-32 chr7 122165176 122165444 + 1.5 NA Intergenic Intergenic -21061 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 401-15 chr15 75492452 75492971 + 1.5 NA intron (NM_002833, intron 7 of 12) intron (NM_002833, intron 7 of 12) -36896 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 280.5-31 chr6 54362394 54362640 + 1.5 NA intron (NM_014464, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 54076 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 380.5-5 chr11 123339633 123339983 + 1.5 NA Intergenic L1PA16|LINE|L1 -18614 NM_001367419 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 335-14 chr14 60744815 60745207 + 1.5 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 10250 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 146-10 chr5 131520276 131520436 + 1.5 NA intron (NM_016340, intron 7 of 27) MER33|DNA|hAT-Charlie 114873 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 326.5-31 chr7 47482586 47482837 + 1.5 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -17908 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 310-13 chr16 29873104 29873385 + 1.5 NA exon (NM_001243333, exon 13 of 17) exon (NM_001243333, exon 13 of 17) 9410 NR_015396 440356 Hs.448823 NR_015396 ENSG00000214725 CDIPTOSP CDIPT-AS1 CDIP transferase opposite strand, pseudogene ncRNA 338.5-33 chr7 89711280 89711591 + 1.5 NA Intergenic Intergenic -407965 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 408-7 chr10 84449599 84450112 + 1.5 NA intron (NM_018999, intron 6 of 10) AluSp|SINE|Alu 24686 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 599.5-3 chr11 91617832 91618296 + 1.5 NA Intergenic L1MA4|LINE|L1 -606970 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 157.5-11 chr2 148913190 148913371 + 1.5 NA intron (NM_004522, intron 1 of 25) MIR3|SINE|MIR -34595 NR_111932 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 353-19 chr19 44256756 44257034 + 1.5 NA Intergenic AluJr|SINE|Alu -2985 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 303-31 chr7 86852548 86853019 + 1.5 NA intron (NM_001363522, intron 4 of 4) intron (NM_001363522, intron 4 of 4) 113116 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 288.5-25 chr2 234933854 234934228 + 1.5 NA Intergenic AluSc8|SINE|Alu -17976 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 197.5-38 chr8 54654766 54654922 + 1.5 NA Intergenic AluJb|SINE|Alu 38748 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 170.5-17 chr3 148631656 148631844 + 1.5 NA Intergenic L1MA3|LINE|L1 -66121 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 276.5-31 chr5 36149821 36150292 + 1.5 NA intron (NM_001007527, intron 1 of 17) intron (NM_001007527, intron 1 of 17) 1831 NM_001007527 92255 Hs.294103 NM_001007527 ENSG00000164187 LMBRD2 - LMBR1 domain containing 2 protein-coding 254.5-12 chr14 57275902 57276100 + 1.5 NA intron (NM_018229, intron 2 of 7) intron (NM_018229, intron 2 of 7) 7030 NM_018229 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 211.5-2 chr1 203747935 203748203 + 1.5 NA Intergenic Intergenic -17114 NM_001136190 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 385-30 chr4 88147156 88147591 + 1.5 NA intron (NM_001257386, intron 1 of 15) intron (NM_001257386, intron 1 of 15) 11266 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 165-12 chr8 92092947 92093101 + 1.5 NA intron (NM_001198627, intron 2 of 13) intron (NM_001198627, intron 2 of 13) 2206 NM_001198630 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 328-5 chr10 53816894 53817198 + 1.5 NA intron (NM_001354429, intron 33 of 36) intron (NM_001354429, intron 33 of 36) -669184 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 183 chr1 108755919 108756147 + 1.5 NA intron (NM_007269, intron 3 of 18) intron (NM_007269, intron 3 of 18) 9359 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 405-28 chr5 29991295 29991674 + 1.5 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 110924 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 200.5-31 chr9 103003977 103004194 + 1.5 NA intron (NM_001340, intron 3 of 7) intron (NM_001340, intron 3 of 7) 8752 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 455-34 chr8 86561440 86562086 + 1.5 NA TTS (NM_003909) TTS (NM_003909) 47328 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 424.5-21 chr9 27796083 27796451 + 1.5 NA Intergenic L1PA8|LINE|L1 -222401 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 178-3 chr1 174023235 174023450 + 1.5 NA Intergenic Intergenic -30270 NM_172071 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 237-19 chr4 86422528 86422739 + 1.5 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 30562 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 232-19 chr2 121316425 121316693 + 1.5 NA Intergenic AluJr|SINE|Alu -31357 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 430.5-21 chr5 93221898 93222391 + 1.5 NA Intergenic Intergenic 349199 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 221-9 chr16 65996764 65997080 + 1.5 NA Intergenic Intergenic -369769 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 236.5-2 chr1 37864427 37864669 + 1.5 NA intron (NR_158630, intron 23 of 24) intron (NR_158630, intron 23 of 24) -4956 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 377-26 chr5 66012711 66013044 + 1.5 NA intron (NM_001253697, intron 5 of 25) intron (NM_001253697, intron 5 of 25) -67304 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 236-17 chr2 51865736 51865893 + 1.5 NA intron (NR_135237, intron 7 of 10) L1PB1|LINE|L1 -504834 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 373.5-10 chr15 85120901 85121261 + 1.5 NA intron (NM_001243137, intron 18 of 21) L1MB8|LINE|L1 113700 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 482-2 chr10 72210639 72211286 + 1.5 NA intron (NM_001369110, intron 2 of 8) intron (NM_001369110, intron 2 of 8) 4994 NM_001369104 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 280-32 chr6 151665152 151665339 + 1.5 NA Intergenic Intergenic -25251 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 359.5-32 chr5 125814753 125815033 + 1.5 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat 321632 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 209-11 chr16 4808583 4808770 + 1.5 NA intron (NM_001324098, intron 14 of 14) intron (NM_001324098, intron 14 of 14) -5726 NM_024589 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi atypical leucine zipper protein-coding 178.5 chr11 79468965 79469158 + 1.5 NA Intergenic Intergenic -28031 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 214-20 chrX 45485714 45485949 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -19557 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 474-13 chr2 45972656 45973083 + 1.5 NA intron (NM_005400, intron 2 of 14) L1MB1|LINE|L1 321194 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 133.5-2 chr1 215585221 215585425 + 1.5 NA intron (NM_001319294, intron 8 of 17) intron (NM_001319294, intron 8 of 17) 18019 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 170-23 chrX 10180103 10180269 + 1.5 NA intron (NM_001256944, intron 2 of 10) intron (NM_001256944, intron 2 of 10) 23211 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 456.5-5 chr10 26875974 26876326 + 1.5 NA Intergenic FLAM_C|SINE|Alu -15063 NM_001348034 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 254.5-32 chr2 185214864 185215071 + 1.5 NA Intergenic L1ME1|LINE|L1 -47895 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 398-28 chr5 64723018 64723399 + 1.5 NA 3' UTR (NM_173829, exon 5 of 5) 3' UTR (NM_173829, exon 5 of 5) 32705 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 262.5-11 chr2 29303883 29304259 + 1.5 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -80171 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 197-2 chr1 52495419 52495570 + 1.5 NA exon (NM_015269, exon 6 of 30) exon (NM_015269, exon 6 of 30) 57596 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 200-24 chr9 94071216 94071496 + 1.5 NA intron (NM_177995, intron 2 of 9) L1MC4|LINE|L1 -13073 NM_152422 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 433-30 chr7 86034607 86034895 + 1.5 NA Intergenic Intergenic -609158 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 157.5-15 chr22 47754366 47754555 + 1.5 NA intron (NR_122046, intron 8 of 8) L1MEc|LINE|L1 122786 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 274-25 chr4 67267455 67267670 + 1.5 NA Intergenic Intergenic 154438 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 254.5-30 chr2 178436615 178436861 + 1.5 NA intron (NM_001139517, intron 5 of 6) intron (NM_001139517, intron 5 of 6) 13890 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 470.5-8 chr2 104970051 104970541 + 1.5 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -67773 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 287.5-12 chr18 1479118 1479518 + 1.5 NA Intergenic Intergenic -119689 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 271.5-15 chr14 86215548 86215917 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 281054 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 118.5-8 chr2 238465726 238465814 + 1.5 NA Intergenic Intergenic 38843 NM_001040445 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 237-6 chr14 24347363 24347570 + 1.5 NA Intergenic Intergenic -7475 NM_006871 11035 Hs.268551 NM_006871 ENSG00000129465 RIPK3 RIP3 receptor interacting serine/threonine kinase 3 protein-coding 514-10 chr2 79813859 79814413 + 1.5 NA intron (NM_001282598, intron 3 of 17) MLT1C|LTR|ERVL-MaLR 52447 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 427.5-18 chr4 95194820 95195463 + 1.5 NA intron (NM_003728, intron 12 of 15) intron (NM_003728, intron 12 of 15) 103650 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 184-3 chr15 27847322 27847468 + 1.5 NA intron (NM_001300984, intron 21 of 22) intron (NM_001300984, intron 21 of 22) 251920 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 195-5 chr12 1159138 1159292 + 1.5 NA intron (NR_027948, intron 7 of 19) MER1B|DNA|hAT-Charlie 131467 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 331-33 chr5 46241266 46241522 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -545014 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 235-5 chr11 17719614 17719914 + 1.5 NA 5' UTR (NM_002478, exon 1 of 3) 5' UTR (NM_002478, exon 1 of 3) 193 NM_002478 4654 Hs.181768 NM_002478 ENSG00000129152 MYOD1 MYF3|MYOD|PUM|bHLHc1 myogenic differentiation 1 protein-coding 204-11 chr15 62610528 62610758 + 1.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger 34538 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 212.5-19 chr2 140013666 140013908 + 1.5 NA Intergenic Charlie15a|DNA|hAT-Charlie 572898 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 252-11 chr14 83280440 83280622 + 1.5 NA Intergenic L1MC5|LINE|L1 637899 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 414.5-2 chr1 168057732 168058227 + 1.5 NA intron (NM_001198956, intron 17 of 21) L1ME3E|LINE|L1 59319 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 216.5-26 chr22 24110717 24111054 + 1.5 NA intron (NM_012295, intron 26 of 36) L1MCc|LINE|L1 -70602 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 185.5-26 chr4 83592228 83592400 + 1.5 NA intron (NM_001256421, intron 7 of 12) intron (NM_001256421, intron 7 of 12) 56206 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 438-5 chr10 41816786 41817101 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 551102 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 320.5-11 chr19 57293486 57293809 + 1.5 NA TTS (NM_001330622) TTS (NM_001330622) 13162 NM_006635 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 275.5-5 chr1 196367259 196367625 + 1.5 NA intron (NR_146057, intron 13 of 26) intron (NR_146057, intron 13 of 26) 215039 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 441.5-13 chr2 132429702 132430118 + 1.5 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) -3801 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 413.5-26 chr9 114563124 114563529 + 1.5 NA Intergenic MER65-int|LTR|ERV1 -24443 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 355.5-14 chr4 73222993 73223412 + 1.5 NA promoter-TSS (NM_001286771) promoter-TSS (NM_001286771) -145 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 314.5-5 chr10 81287171 81287429 + 1.5 NA Intergenic L1PA15|LINE|L1 -587894 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 394.5-8 chr16 20762536 20763111 + 1.5 NA Intergenic L1MDa|LINE|L1 -1167 NM_202000 6296 Hs.706754 NM_005622 ENSG00000005187 ACSM3 SA|SAH acyl-CoA synthetase medium chain family member 3 protein-coding 385-28 chr4 39303492 39303791 + 1.5 NA intron (NM_001204747, intron 15 of 24) AluSq2|SINE|Alu 62721 NM_001204747 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 314.5-27 chr4 55326100 55326448 + 1.5 NA Intergenic AluSx1|SINE|Alu -19968 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 211-18 chr3 188902264 188902437 + 1.5 NA Intergenic Intergenic 45289 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 286-33 chr9 36398713 36399121 + 1.5 NA intron (NM_194330, intron 1 of 11) intron (NM_194330, intron 1 of 11) 1352 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 289-9 chr10 67503647 67503896 + 1.5 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -100361 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 446-22 chr2 136750103 136750441 + 1.5 NA Intergenic Intergenic -15273 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 388-32 chr6 79086664 79087032 + 1.5 NA Intergenic Intergenic -8594 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 223-10 chr14 60749337 60749533 + 1.5 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 14674 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 279.5-24 chr9 82155169 82155551 + 1.5 NA Intergenic Intergenic 166588 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 237-23 chr6 82075031 82075218 + 1.5 NA intron (NR_149135, intron 1 of 3) MIR|SINE|MIR 26641 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 348.5-19 chr4 53117708 53118076 + 1.5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 248169 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 218.5-27 chr7 343827 344163 + 1.5 NA Intergenic Intergenic -35430 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 390-19 chr3 16301296 16301736 + 1.5 NA intron (NM_001330670, intron 6 of 8) intron (NM_001330670, intron 6 of 8) 36304 NM_138381 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 239.5-19 chr5 178367926 178368175 + 1.5 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -135228 NR_103508 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 244.5-25 chr22 27637986 27638301 + 1.5 NA Intergenic Intergenic 163613 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 192 chr1 36712677 36712858 + 1.5 NA Intergenic Intergenic -229453 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 229.5-22 chr22 39505606 39505781 + 1.5 NA intron (NM_001304564, intron 2 of 6) L2|LINE|L2 3463 NR_130790 54471 Hs.728085 NM_013298 ENSG00000100335 MIEF1 AltMIEF1|HSU79252|MID51|MIEF1-MP|SMCR7L|dJ1104E15.3 mitochondrial elongation factor 1 protein-coding 346-17 chr14 46406226 46406502 + 1.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -64995 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 134.5-22 chr7 52770871 52771051 + 1.5 NA Intergenic Intergenic -264672 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 254-29 chr4 113407894 113408119 + 1.5 NA Intergenic Intergenic 115167 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 276-30 chr22 30147255 30147600 + 1.5 NA intron (NM_001329457, intron 11 of 11) L1ME2|LINE|L1 66963 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 245-26 chr3 65341081 65341445 + 1.5 NA Intergenic L2|LINE|L2 -552553 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 411.5-22 chr4 45603055 45603488 + 1.5 NA Intergenic Intergenic 520783 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 174.5-7 chr11 110407536 110407814 + 1.5 NA TTS (NR_135100) TTS (NR_135100) -22273 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 210.5-15 chr21 19621826 19621998 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 277843 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 207.5-8 chr11 30492578 30492737 + 1.5 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 87836 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 213.5-16 chr15 49136146 49136381 + 1.5 NA intron (NM_001143887, intron 6 of 12) intron (NM_001143887, intron 6 of 12) 19336 NM_004236 9318 Hs.369614 NM_004236 ENSG00000166200 COPS2 ALIEN|CSN2|SGN2|TRIP15 COP9 signalosome subunit 2 protein-coding 306.5-38 chr8 129650318 129650813 + 1.5 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 29674 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 394.5-14 chr2 103872993 103873367 + 1.5 NA Intergenic Intergenic 535152 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 176.5-21 chr4 85104861 85105034 + 1.5 NA Intergenic Intergenic 137463 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 366-18 chr5 16668066 16668322 + 1.5 NA intron (NM_012334, intron 40 of 40) intron (NM_012334, intron 40 of 40) -51136 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 213-13 chr4 58720758 58720915 + 1.5 NA Intergenic LTR84a|LTR|ERVL -184508 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 276.5-33 chr5 94108600 94108821 + 1.5 NA intron (NM_032042, intron 1 of 10) L1MB3|LINE|L1 2953 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 166.5-21 chr7 110929823 110930012 + 1.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -161089 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 475.5-3 chr12 38779174 38779752 + 1.5 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 126128 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 210.5-30 chr8 134606967 134607145 + 1.5 NA intron (NM_020863, intron 5 of 15) intron (NM_020863, intron 5 of 15) 8985 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 233-32 chr9 106663609 106663808 + 1.5 NA intron (NR_104145, intron 3 of 6) L1MC4|LINE|L1 47650 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 375.5-23 chr4 155040318 155040731 + 1.5 NA Intergenic Intergenic -168112 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 461.5-12 chr22 47921615 47921922 + 1.5 NA Intergenic Intergenic 290094 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 313.5-9 chr11 93664442 93664716 + 1.5 NA intron (NM_033395, intron 1 of 29) intron (NM_033395, intron 1 of 29) 2897 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 313.5-28 chr4 11857702 11858158 + 1.5 NA Intergenic MIR|SINE|MIR 74752 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 370-17 chr2 53081519 53081952 + 1.5 NA Intergenic AluSq2|SINE|Alu -379120 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 195-16 chr4 80365598 80365833 + 1.5 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 29995 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 231-16 chr20 31157686 31157890 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -99876 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 513-22 chr3 88288429 88288817 + 1.5 NA Intergenic Intergenic -49833 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 193-12 chr20 45813516 45813699 + 1.5 NA intron (NR_104036, intron 2 of 3) intron (NR_104036, intron 2 of 3) 612 NM_181801 11065 Hs.93002 NM_007019 ENSG00000175063 UBE2C UBCH10|dJ447F3.2 ubiquitin conjugating enzyme E2 C protein-coding 200-11 chr17 51847743 51847976 + 1.5 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 310855 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 218.5-15 chr17 82241607 82241880 + 1.5 NA TTS (NM_001893) TTS (NM_001893) 5075 NR_106845 102465472 NR_106845 ENSG00000284574 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 250-5 chr10 62054623 62054960 + 1.5 NA intron (NM_001244638, intron 2 of 6) intron (NM_001244638, intron 2 of 6) 5434 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 166-15 chr9 74439516 74439688 + 1.5 NA Intergenic L1MEi|LINE|L1 -57733 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 273-29 chr4 176100501 176100745 + 1.5 NA intron (NM_170710, intron 2 of 30) L1PB4|LINE|L1 34782 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 352-36 chr6 48362920 48363207 + 1.5 NA Intergenic L2|LINE|L2 -294374 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 185.5-3 chr10 23842477 23842669 + 1.5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 147846 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 342-21 chr20 42628629 42628901 + 1.5 NA intron (NM_133170, intron 7 of 31) MER58A|DNA|hAT-Charlie -56718 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 266.5-28 chrX 67572960 67573181 + 1.5 NA intron (NM_001011645, intron 2 of 8) MIR|SINE|MIR 28447 NM_001348061 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 193.5-9 chr12 23029925 23030132 + 1.5 NA Intergenic Intergenic -145608 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 197.5-14 chr14 82271070 82271364 + 1.5 NA Intergenic Intergenic -371415 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 346-37 chrX 96344562 96344907 + 1.5 NA Intergenic AluSc|SINE|Alu -6832 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 621-2 chr11 59409779 59410490 + 1.5 NA Intergenic MER57B1|LTR|ERV1 12819 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 361.5-3 chr11 14536035 14536538 + 1.5 NA intron (NM_148976, intron 2 of 10) AluSx1|SINE|Alu -15841 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 253-21 chr3 95292030 95292198 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 353851 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 227.5-20 chr4 111116123 111116449 + 1.5 NA Intergenic Intergenic -255639 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 529-3 chr10 92176992 92177511 + 1.5 NA intron (NM_001178137, intron 4 of 9) intron (NM_001178137, intron 4 of 9) 66028 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 232.5-20 chr2 35562317 35562646 + 1.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 91076 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 636-23 chr9 34276630 34277165 + 1.5 NA intron (NM_194313, intron 6 of 12) intron (NM_194313, intron 6 of 12) 52371 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 278-7 chr11 86447587 86447931 + 1.5 NA intron (NM_001014811, intron 10 of 13) AluSq|SINE|Alu 72872 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 380.5-28 chr8 117773130 117773483 + 1.5 NA Intergenic Intergenic 147607 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 269-29 chr6 41049880 41050187 + 1.5 NA Intergenic Intergenic -3168 NM_006789 10930 Hs.555915 NM_006789 ENSG00000124701 APOBEC2 ARCD1|ARP1 apolipoprotein B mRNA editing enzyme catalytic subunit 2 protein-coding 172.5-5 chr12 8780770 8780944 + 1.5 NA intron (NR_147950, intron 8 of 8) intron (NR_147950, intron 8 of 8) -41764 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 435-7 chr12 38825627 38826206 + 1.5 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 79675 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 238.5-18 chr19 4212556 4212836 + 1.5 NA exon (NM_133475, exon 15 of 22) exon (NM_133475, exon 15 of 22) -16827 NM_005755 10148 Hs.501452 NM_005755 ENSG00000105246 EBI3 IL-27B|IL27B|IL35B Epstein-Barr virus induced 3 protein-coding 151-3 chr13 114215148 114215321 + 1.5 NA Intergenic L1M5|LINE|L1 -19611 NM_003903 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 346-7 chr10 39095808 39096118 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 399367 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 159.5-33 chrX 96282644 96282786 + 1.5 NA Intergenic L1PREC2|LINE|L1 55187 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 517-6 chr18 11269214 11269700 + 1.5 NA Intergenic MIRc|SINE|MIR -120695 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 233.5-35 chr8 22346331 22346486 + 1.5 NA intron (NM_001330480, intron 20 of 21) L1MEg|LINE|L1 -20870 NM_015359 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 232-3 chr1 197770688 197770885 + 1.5 NA intron (NM_001195216, intron 2 of 2) intron (NM_001195216, intron 2 of 2) 4694 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 189.5-28 chr8 118729499 118729664 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -107618 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 212-15 chr22 27124888 27125156 + 1.5 NA Intergenic Intergenic -62494 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 220-24 chr5 4956825 4956997 + 1.5 NA Intergenic Intergenic -77448 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 647-4 chr11 101012489 101013173 + 1.5 NA Intergenic Intergenic 78557 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 189-21 chr5 55179156 55179283 + 1.5 NA Intergenic Intergenic -6042 NM_152623 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 477-20 chr6 66136460 66136926 + 1.5 NA Intergenic L1P4d|LINE|L1 348814 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 324.5-5 chr1 175683151 175683509 + 1.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 60265 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 394.5-15 chr2 214476742 214477055 + 1.5 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -33284 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 196.5-25 chr3 80881173 80881343 + 1.5 NA Intergenic Intergenic 110554 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 259-28 chr8 121369586 121369913 + 1.5 NA Intergenic L1MDa|LINE|L1 -269597 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 280.5-17 chr2 134796829 134797111 + 1.5 NA Intergenic MIR3|SINE|MIR -41646 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 118.5 chr10 47123652 47123839 + 1.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -176452 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 333-33 chr5 123291115 123291472 + 1.5 NA Intergenic Intergenic 132299 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 270-36 chr9 12252637 12252951 + 1.5 NA Intergenic L2a|LINE|L2 -440591 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 183.5-5 chr10 83226558 83226800 + 1.5 NA Intergenic Intergenic 450410 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 262-4 chr1 198015981 198016329 + 1.5 NA Intergenic L1PA8|LINE|L1 98783 NM_001370213 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 123-8 chrX 83076548 83076647 + 1.5 NA Intergenic Intergenic -431693 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 660.5 chr1 106632692 106633434 + 1.5 NA Intergenic Intergenic -185176 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 340.5-31 chr8 70648054 70648502 + 1.5 NA intron (NM_016027, intron 3 of 6) HAL1|LINE|L1 20907 NM_016027 51110 Hs.118554 NM_016027 ENSG00000147592 LACTB2 CGI-83 lactamase beta 2 protein-coding 293.5-6 chr12 13157368 13157618 + 1.5 NA Intergenic L1ME4a|LINE|L1 -39233 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 287.5-20 chr3 174221252 174221506 + 1.5 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -300583 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 132.5-3 chr10 63972362 63972491 + 1.5 NA Intergenic L1MDa|LINE|L1 -450536 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 487.5-29 chr8 82449813 82450243 + 1.5 NA Intergenic L1PA15|LINE|L1 -462076 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 276.5-13 chr15 58470153 58470368 + 1.5 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 28475 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 152-3 chr10 129166984 129167170 + 1.5 NA Intergenic Intergenic 254244 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 261-11 chr2 86596437 86596815 + 1.5 NA intron (NM_001198954, intron 3 of 7) Tigger1|DNA|TcMar-Tigger 27239 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 299.5-21 chr2 191659161 191659431 + 1.5 NA Intergenic Intergenic -18776 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 196.5-28 chr5 37417835 37418167 + 1.5 NA intron (NM_001345998, intron 5 of 17) Tigger18a|DNA|TcMar-Tigger 38683 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 444-14 chr18 13414284 13414770 + 1.5 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 13007 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 382-4 chr11 63657185 63657627 + 1.5 NA intron (NM_015459, intron 3 of 12) HAL1|LINE|L1 13970 NM_015459 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 304.5-12 chr11 126023703 126024105 + 1.5 NA intron (NM_016952, intron 1 of 19) intron (NM_016952, intron 1 of 19) 39388 NM_016952 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 168.5-3 chr10 51607370 51607566 + 1.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 92127 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 221.5-23 chr6 52153403 52153636 + 1.5 NA Intergenic AluSc|SINE|Alu -2496 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 267.5-22 chr7 2511238 2511672 + 1.5 NA Intergenic Intergenic -1074 NM_001166355 3955 Hs.159142 NM_002304 ENSG00000106003 LFNG SCDO3 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 425.5-10 chr18 51081679 51082127 + 1.5 NA 3' UTR (NM_005359, exon 12 of 12) 3' UTR (NM_005359, exon 12 of 12) 51690 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 161-12 chr4 57073952 57074059 + 1.5 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -35757 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 366.5-3 chr1 239074270 239074666 + 1.5 NA Intergenic L1MA2|LINE|L1 -312100 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 175-3 chr11 12130480 12130664 + 1.5 NA intron (NM_001346293, intron 2 of 26) L2c|LINE|L2 -7818 NM_001282665 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 224.5-21 chr3 77648302 77648591 + 1.5 NA 3' UTR (NM_002942, exon 26 of 26) 3' UTR (NM_002942, exon 26 of 26) 400517 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 232-10 chr11 64527094 64527258 + 1.5 NA Intergenic MER57E1|LTR|ERV1 -28765 NM_018484 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 213.5-25 chr4 80435843 80436041 + 1.5 NA intron (NM_152770, intron 2 of 5) MLT1J-int|LTR|ERVL-MaLR 100222 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 187-13 chr2 69079284 69079530 + 1.5 NA intron (NM_032208, intron 8 of 17) intron (NM_032208, intron 8 of 17) -24275 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 173.5 chr1 58096109 58096326 + 1.5 NA intron (NM_001353980, intron 1 of 5) Tigger15a|DNA|TcMar-Tigger 154286 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 476-26 chr4 117877292 117877750 + 1.5 NA Intergenic LTR67B|LTR|ERVL 43120 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 214-17 chr6 143672507 143672762 + 1.5 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) -5331 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 237.5-7 chr12 68308751 68309147 + 1.5 NA intron (NM_001368282, intron 11 of 13) L2b|LINE|L2 23413 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 269-15 chr15 65160724 65161038 + 1.5 NA intron (NM_006660, intron 6 of 13) MamRep137|DNA|TcMar-Tigger 24461 NR_133680 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 221-20 chr5 52774944 52775239 + 1.5 NA Intergenic Intergenic -12825 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 259.5-31 chr4 89224653 89224971 + 1.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger 82988 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 374.5-26 chr9 132918842 132919213 + 1.5 NA intron (NM_000368, intron 8 of 22) Tigger3a|DNA|TcMar-Tigger 25589 NM_001162427 7248 Hs.370854 NM_000368 ENSG00000165699 TSC1 LAM|TSC TSC complex subunit 1 protein-coding 280-10 chr12 24954063 24954315 + 1.5 NA Intergenic Intergenic -5088 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 131-6 chr20 62719045 62719164 + 1.5 NA intron (NM_002531, intron 1 of 3) L1MEf|LINE|L1 10268 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 323.5-2 chr1 76529103 76529453 + 1.5 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 249989 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 302.5-4 chr10 16662579 16662905 + 1.5 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -140863 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 227-13 chr12 45122940 45123286 + 1.5 NA Intergenic Intergenic -57702 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 165-10 chr6 109700936 109701095 + 1.5 NA intron (NM_014845, intron 1 of 22) intron (NM_014845, intron 1 of 22) 9794 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 179-19 chr7 9570987 9571152 + 1.5 NA Intergenic Intergenic -63201 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 275-25 chr20 62488872 62489199 + 1.5 NA Intergenic Intergenic -13040 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 488.5-6 chr2 121239602 121240063 + 1.5 NA intron (NM_014553, intron 7 of 14) intron (NM_014553, intron 7 of 14) 45370 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 357-45 chr8 122666507 122666883 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 27411 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 260.5-22 chr2 63502336 63502558 + 1.5 NA intron (NR_148705, intron 1 of 16) L1ME3G|LINE|L1 -64440 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 249.5-26 chr5 34931475 34931685 + 1.5 NA intron (NM_194283, intron 1 of 12) intron (NM_194283, intron 1 of 12) 1987 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 183-12 chr2 39469108 39469262 + 1.5 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 31769 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 468-14 chr19 28366836 28367205 + 1.5 NA Intergenic Intergenic -239668 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 250-40 chr9 133009027 133009344 + 1.5 NA Intergenic L1ME4b|LINE|L1 -11245 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 367-20 chr22 36183789 36184182 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -17808 NM_145642 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 191-5 chr17 12768423 12768586 + 1.5 NA 3' UTR (NM_153604, exon 13 of 13) 3' UTR (NM_153604, exon 13 of 13) -20994 NM_001321167 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 139.5-17 chr4 67490825 67491004 + 1.5 NA intron (NR_155754, intron 16 of 18) (AT)n|Simple_repeat|Simple_repeat 54589 NR_155754 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 407.5-6 chr14 50034514 50034828 + 1.5 NA intron (NR_131171, intron 6 of 8) MIR|SINE|MIR -27151 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 121.5-15 chr4 136112301 136112445 + 1.5 NA Intergenic L1MEg|LINE|L1 -198693 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 345-13 chr16 25451555 25451982 + 1.5 NA Intergenic L1ME5|LINE|L1 -193923 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 359-13 chr13 39165967 39166302 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 127678 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 273.5-11 chr17 67973635 67973859 + 1.5 NA intron (NM_182641, intron 26 of 27) AluSx|SINE|Alu 19859 NM_181656 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 230-28 chr4 182121067 182121247 + 1.5 NA Intergenic AluSx1|SINE|Alu 23358 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 498-7 chr12 14190068 14190476 + 1.5 NA Intergenic L1PA15|LINE|L1 -175360 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 464.5-11 chr16 58299294 58299686 + 1.5 NA Intergenic L1MEd|LINE|L1 -4443 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 171-3 chr14 53344046 53344291 + 1.5 NA Intergenic Intergenic 190814 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 369-25 chr21 31353149 31353736 + 1.5 NA intron (NM_001353690, intron 1 of 27) MIRb|SINE|MIR -9088 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 421.5-13 chr18 56166993 56167356 + 1.5 NA intron (NR_148972, intron 3 of 8) intron (NR_148972, intron 3 of 8) 24088 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 253.5-25 chr3 53623316 53623569 + 1.5 NA intron (NM_001128840, intron 3 of 47) L1ME2z|LINE|L1 128831 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 160.5-21 chr5 25339352 25339579 + 1.5 NA Intergenic Intergenic 148512 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 311.5-27 chr20 7071509 7071774 + 1.5 NA Intergenic Intergenic 182561 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 258 chr1 29165629 29165921 + 1.5 NA intron (NM_005626, intron 1 of 5) intron (NM_005626, intron 1 of 5) 16125 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 135.5-8 chr3 35346875 35347005 + 1.5 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 47083 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 179-15 chr3 77251378 77251505 + 1.5 NA intron (NM_001290039, intron 2 of 26) MLT-int|LTR|ERVL-MaLR 153429 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 230-23 chr3 186522757 186523075 + 1.5 NA Intergenic L2a|LINE|L2 21464 NM_017541 1427 Hs.376209 NM_017541 ENSG00000213139 CRYGS CRYG8|CTRCT20 crystallin gamma S protein-coding 409.5-11 chr2 75437861 75438442 + 1.5 NA Intergenic L1ME3B|LINE|L1 -85917 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 124 chr1 13550448 13550588 + 1.5 NA Intergenic Intergenic -33239 NM_006474 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 216-11 chr17 57452759 57452929 + 1.5 NA intron (NM_001322250, intron 6 of 13) MIR|SINE|MIR 70753 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 444.5-5 chr2 42871460 42871875 + 1.5 NA Intergenic L1ME3A|LINE|L1 -79084 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 466.5-16 chr3 183090420 183090844 + 1.5 NA intron (NM_001293273, intron 2 of 16) AluSp|SINE|Alu 8611 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 408-18 chr17 48579861 48580221 + 1.5 NA promoter-TSS (NR_029608) promoter-TSS (NR_029608) -94 NR_029608 406902 NR_029608 ENSG00000284038 MIR10A MIRN10A|hsa-mir-10a|miRNA10A|mir-10a microRNA 10a ncRNA 456-23 chr4 95723696 95724368 + 1.5 NA Intergenic Intergenic -116061 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 196-11 chr5 20061700 20061895 + 1.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -73597 NM_001167667 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 225.5-15 chr16 62209814 62209964 + 1.5 NA Intergenic L1PA13|LINE|L1 -173451 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 220-28 chr6 154459249 154459437 + 1.5 NA intron (NM_001368117, intron 1 of 12) intron (NM_001368117, intron 1 of 12) 19148 NM_001368118 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 326.5-4 chr10 21083283 21083581 + 1.5 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -90558 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 301.5-26 chr9 125482461 125482740 + 1.5 NA intron (NM_001006619, intron 8 of 10) MER6B|DNA|TcMar-Tigger 220774 NM_001354295 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 235.5-12 chr15 59045373 59045577 + 1.5 NA intron (NM_001270529, intron 2 of 13) AluSq2|SINE|Alu 57329 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 224.5-14 chr2 28237450 28237694 + 1.5 NA intron (NM_199193, intron 9 of 13) intron (NM_199193, intron 9 of 13) -30611 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 259-13 chr2 173762812 173763215 + 1.5 NA Intergenic (AAAGA)n|Simple_repeat|Simple_repeat 200867 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 465-24 chr2 18581161 18581738 + 1.5 NA intron (NM_001199104, intron 7 of 10) intron (NM_001199104, intron 7 of 10) 8120 NM_001199086 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 387-35 chr7 130365737 130366276 + 1.5 NA intron (NR_133928, intron 1 of 1) intron (NR_133928, intron 1 of 1) 1121 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 361.5-7 chr14 99678630 99679081 + 1.5 NA 3' UTR (NM_001127258, exon 9 of 9) 3' UTR (NM_001127258, exon 9 of 9) -5443 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 274-10 chr14 40257055 40257266 + 1.5 NA Intergenic Intergenic -697551 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 378.5-22 chr22 39713941 39714282 + 1.5 NA Intergenic Intergenic 143358 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 398.5-21 chr9 31315484 31315849 + 1.5 NA Intergenic HAL1b|LINE|L1 65824 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 282-10 chr11 32086514 32086819 + 1.5 NA Intergenic L1MEc|LINE|L1 -4408 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 198-12 chr20 46583107 46583450 + 1.5 NA intron (NM_001193340, intron 9 of 12) MER58B|DNA|hAT-Charlie -32624 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 136.5-15 chr5 148368236 148368335 + 1.5 NA intron (NR_105057, intron 2 of 4) L1MB7|LINE|L1 15565 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 257-34 chr4 37984219 37984497 + 1.5 NA intron (NM_001253912, intron 2 of 20) L1MC1|LINE|L1 23960 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 490-27 chr5 40159961 40160561 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 107970 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 386-16 chr19 31254778 31255103 + 1.5 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 87430 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 373-11 chr12 38022229 38022702 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -294309 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 317-19 chr3 120394785 120395099 + 1.5 NA TTS (NR_029584) TTS (NR_029584) 787 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 224-21 chr4 31766630 31766851 + 1.5 NA Intergenic Intergenic -230639 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 527-2 chr1 82650923 82651655 + 1.5 NA Intergenic L1MB8|LINE|L1 -251894 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 187.5-11 chr18 45715860 45716011 + 1.5 NA Intergenic Intergenic -8246 NM_001308279 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 340.5-28 chr7 89131002 89131262 + 1.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -335395 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 203-27 chr7 146055871 146056098 + 1.5 NA Intergenic HERVP71A-int|LTR|ERV1 -718287 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 269.5-52 chr8 90003864 90004106 + 1.5 NA intron (NM_001359, intron 1 of 9) MER112|DNA|hAT-Charlie 2508 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 332-7 chr14 69686267 69686696 + 1.5 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) 74885 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 189-11 chr18 12951853 12952007 + 1.5 NA intron (NM_031216, intron 2 of 8) intron (NM_031216, intron 2 of 8) 3919 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 132 chr2 215073465 215073588 + 1.5 NA intron (NR_103740, intron 2 of 54) intron (NR_103740, intron 2 of 54) -41440 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 254-6 chr11 30841959 30842282 + 1.5 NA Intergenic L1ME3D|LINE|L1 150566 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 163-2 chr11 32408781 32408962 + 1.5 NA intron (NM_000378, intron 4 of 8) intron (NM_000378, intron 4 of 8) -8471 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 512.5-12 chr9 118733445 118733905 + 1.5 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 54004 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 245.5-6 chr12 40458530 40458784 + 1.5 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 65263 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 807-6 chr17_KI270858v1_alt 23323 24175 + 1.5 NA NA Intergenic NA NA 236.5-4 chr1 155794539 155794921 + 1.5 NA intron (NM_032292, intron 12 of 20) L2c|LINE|L2 -10898 NR_132767 106633816 NR_132767 SCARNA26B - small Cajal body-specific RNA 26B ncRNA 178.5-2 chr11 116603664 116603810 + 1.5 NA Intergenic Intergenic -35685 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 405 chr1 172772941 172773334 + 1.5 NA Intergenic Intergenic 114034 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 149-3 chr14 70523268 70523399 + 1.5 NA exon (NM_003814, exon 2 of 2) exon (NM_003814, exon 2 of 2) 11671 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 316.5-4 chr1 174337665 174337956 + 1.5 NA intron (NM_001366445, intron 11 of 13) intron (NM_001366445, intron 11 of 13) 62710 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 433-21 chr4 179055244 179055765 + 1.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -1147568 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 437-39 chr8 90272400 90272748 + 1.5 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 51086 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 331.5-15 chr2 209757994 209758366 + 1.5 NA Intergenic L1PA14|LINE|L1 -13652 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 221-5 chr1 167946262 167946511 + 1.5 NA intron (NM_001349780, intron 1 of 17) L1MA4A|LINE|L1 -9314 NM_001143674 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44|SLC54A2 mitochondrial pyruvate carrier 2 protein-coding 370.5-8 chr15 26050564 26050946 + 1.5 NA intron (NR_040082, intron 3 of 4) intron (NR_040082, intron 3 of 4) -65058 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 249.5-28 chr5 64799880 64800090 + 1.5 NA intron (NM_001297645, intron 7 of 10) intron (NM_001297645, intron 7 of 10) 31055 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 381.5-20 chr6 36829271 36829753 + 1.5 NA intron (NM_020939, intron 1 of 20) AluJr|SINE|Alu 9932 NM_020939 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 227-7 chr11 16563800 16564109 + 1.5 NA intron (NM_001367872, intron 3 of 16) L1MDa|LINE|L1 -87566 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 244-2 chr10 17324975 17325137 + 1.5 NA intron (NR_144322, intron 5 of 6) (TA)n|Simple_repeat|Simple_repeat -61880 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 287 chr1 46211874 46212259 + 1.5 NA intron (NM_001013615, intron 1 of 1) intron (NM_001013615, intron 1 of 1) 8239 NM_001243766 55624 Hs.525134 NM_017739 ENSG00000085998 POMGNT1 GNTI.2|GnT I.2|LGMD2O|LGMDR15|MEB|MGAT1.2|RP76|gnT-I.2 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding 277-51 chrUn_KI270442v1 68491 68828 + 1.5 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 250.5-6 chr11 87677556 87677849 + 1.5 NA Intergenic MIR|SINE|MIR 41709 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 181.5-10 chr14 24461829 24461959 + 1.5 NA intron (NR_110032, intron 2 of 2) L2a|LINE|L2 18941 NR_110032 101927045 Hs.637772 NR_110032 LOC101927045 - uncharacterized LOC101927045 ncRNA 243.5-6 chr10 109759204 109759438 + 1.5 NA Intergenic Intergenic 163925 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 431.5 chr1 97807731 97808237 + 1.5 NA intron (NM_000110, intron 3 of 22) L1MC1|LINE|L1 11063 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 224-15 chr2 98244457 98244668 + 1.5 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 95029 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 270-12 chr2 11604663 11604927 + 1.5 NA intron (NM_014668, intron 17 of 32) intron (NM_014668, intron 17 of 32) 62109 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 258.5-11 chr2 162906612 162906984 + 1.5 NA Intergenic Intergenic -68031 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 398-35 chr8 34670488 34670909 + 1.5 NA Intergenic L2a|LINE|L2 -113223 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 229-5 chr10 21350880 21351160 + 1.5 NA intron (NR_155751, intron 4 of 4) AluSx4|SINE|Alu 21930 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 262.5-16 chr4 64954445 64954827 + 1.5 NA intron (NR_033976, intron 2 of 6) MER61-int|LTR|ERV1 49864 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 195-3 chr10 84549496 84549636 + 1.5 NA Intergenic Intergenic 124397 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 377-23 chr3 78053027 78053576 + 1.5 NA Intergenic Intergenic -4338 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 487-22 chr20 7244838 7245257 + 1.5 NA intron (NR_110609, intron 2 of 7) L3|LINE|CR1 9155 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 358-33 chr3 176702650 176703099 + 1.5 NA Intergenic Tigger6b|DNA|TcMar-Tigger -67342 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 420.5-13 chr22 33350737 33351334 + 1.5 NA intron (NM_133642, intron 9 of 14) L2a|LINE|L2 85634 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 598-14 chr8 79601459 79602180 + 1.5 NA Intergenic L1MC4|LINE|L1 -9298 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 401-6 chr10 44220981 44221385 + 1.5 NA Intergenic L1ME3A|LINE|L1 -71567 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 481.5-13 chr4 58564043 58564543 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -27965 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 378.5 chr1 74929957 74930584 + 1.5 NA Intergenic MIRb|SINE|MIR -196862 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 264-28 chr8 58843079 58843340 + 1.5 NA intron (NM_014729, intron 4 of 8) L4_C_Mam|LINE|RTE-X -183356 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 400-25 chr6 136075810 136076395 + 1.5 NA intron (NM_018945, intron 2 of 12) HAL1|LINE|L1 -3275 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 183-14 chr21 27611573 27611784 + 1.5 NA Intergenic Intergenic -110701 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 332.5-13 chr5 19740171 19740392 + 1.5 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 145991 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 330.5-35 chrX 104711113 104711594 + 1.5 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 145154 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 360-41 chr5 119608624 119608905 + 1.5 NA Intergenic Intergenic -20794 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 185.5 chr1 91517186 91517309 + 1.5 NA intron (NM_001134420, intron 10 of 11) L2c|LINE|L2 16139 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 375.5-11 chr17 70051539 70051953 + 1.5 NA intron (NR_104130, intron 1 of 1) intron (NR_104130, intron 1 of 1) 475 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 173.5-13 chr22 24107438 24107664 + 1.5 NA intron (NM_012295, intron 26 of 36) intron (NM_012295, intron 26 of 36) -73936 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 244.5-28 chr3 170653019 170653216 + 1.5 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -67042 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 589.5-9 chr6 63150373 63150842 + 1.5 NA Intergenic Intergenic 169370 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 267-46 chr7 53840812 53841047 + 1.5 NA Intergenic Intergenic -28998 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 308.5-10 chr14 47131449 47131722 + 1.5 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 211661 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 431.5-12 chr22 28141085 28141521 + 1.5 NA intron (NM_001145418, intron 6 of 22) L2a|LINE|L2 -220691 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 287-20 chr2 104057814 104058167 + 1.5 NA Intergenic L1MB4|LINE|L1 350342 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 286-22 chr3 15883358 15883603 + 1.5 NA Intergenic Intergenic 9709 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 289-43 chrX 72511836 72512196 + 1.5 NA intron (NM_001166448, intron 2 of 4) intron (NM_001166448, intron 2 of 4) 60827 NM_018486 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 262-20 chr2 88518833 88519088 + 1.5 NA Intergenic Intergenic -5689 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 568-5 chr10 116680808 116681445 + 1.5 NA intron (NM_001330164, intron 10 of 12) intron (NM_001330164, intron 10 of 12) -10844 NM_001350930 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 143-3 chr17 21979551 21979652 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -223394 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 260.5-14 chr17 65802691 65803050 + 1.5 NA intron (NM_001353129, intron 21 of 26) MLT1G1|LTR|ERVL-MaLR 23581 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 344.5-32 chr8 65595521 65595804 + 1.5 NA Intergenic Intergenic -32996 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 400-28 chr7 50492902 50493221 + 1.5 NA intron (NM_001242890, intron 9 of 9) intron (NM_001242890, intron 9 of 9) -38698 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 781.5-2 chr11 265470 266121 + 1.5 NA Intergenic L1M5|LINE|L1 -12612 NM_001276700 171389 Hs.352611 NM_138329 ENSG00000174885 NLRP6 AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 NLR family pyrin domain containing 6 protein-coding 379.5-13 chr2 170594179 170594647 + 1.5 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 120154 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 292.5-31 chr8 87020735 87021027 + 1.5 NA intron (NM_173538, intron 4 of 10) MER4E|LTR|ERV1 154466 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 503-11 chr17 76453607 76454229 + 1.5 NA promoter-TSS (NM_022066) promoter-TSS (NM_022066) 567 NM_001166579 15 Hs.431417 NM_001088 ENSG00000129673 AANAT DSPS|SNAT aralkylamine N-acetyltransferase protein-coding 181-10 chr21 18103671 18103850 + 1.5 NA intron (NM_001204178, intron 2 of 5) MLT1H1|LTR|ERVL-MaLR -141073 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 221-2 chr1 11670639 11670854 + 1.5 NA intron (NM_018438, intron 2 of 5) AluJo|SINE|Alu 6546 NM_018438 26270 Hs.464419 NM_018438 ENSG00000116663 FBXO6 FBG2|FBS2|FBX6|Fbx6b F-box protein 6 protein-coding 260.5-20 chr2 1869783 1870077 + 1.5 NA intron (NM_015025, intron 18 of 24) intron (NM_015025, intron 18 of 24) -125415 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 174.5-4 chr10 78839900 78840115 + 1.5 NA Intergenic L1ME4b|LINE|L1 227441 NR_015429 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 397-18 chr2 12538859 12539229 + 1.5 NA intron (NR_110196, intron 4 of 5) MER5A|DNA|hAT-Charlie -177828 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 297-17 chr2 147240600 147241047 + 1.5 NA Intergenic L1ME2z|LINE|L1 -603694 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 416-2 chr1 29750464 29750880 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 286940 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 181-5 chr12 39970383 39970561 + 1.5 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 135609 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 768.5 chr10 85849204 85849766 + 1.5 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 271754 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 282-19 chr2 236736482 236736869 + 1.5 NA Intergenic Intergenic 166850 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 251-12 chr16 73601602 73601822 + 1.5 NA Intergenic Intergenic 214907 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 256-23 chr4 56280591 56280958 + 1.5 NA intron (NM_020722, intron 3 of 10) intron (NM_020722, intron 3 of 10) 106717 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 389.5-20 chr3 141111783 141112097 + 1.5 NA intron (NM_080862, intron 2 of 2) Charlie15a|DNA|hAT-Charlie 60593 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 444-22 chr4 53402167 53402852 + 1.5 NA intron (NM_001134938, intron 8 of 14) AluSz6|SINE|Alu 24856 NM_001134937 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 197.5-5 chr10 21172118 21172349 + 1.5 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -1757 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 344-12 chr14 60058751 60059113 + 1.5 NA intron (NR_075071, intron 31 of 32) intron (NR_075071, intron 31 of 32) -32979 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 295-27 chr20 62627935 62628210 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -14431 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 306.5-20 chr2 119767453 119767754 + 1.5 NA intron (NM_002830, intron 1 of 26) L1MC4|LINE|L1 7681 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 432.5-8 chr15 81498323 81498688 + 1.5 NA Intergenic L2a|LINE|L2 -124292 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 287-18 chr2 39385769 39386128 + 1.5 NA intron (NM_003618, intron 1 of 33) L1ME1|LINE|L1 51337 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 520.5-16 chr7 25160445 25160903 + 1.5 NA intron (NM_138811, intron 4 of 9) intron (NM_138811, intron 4 of 9) 19680 NM_138811 136895 Hs.122055 NM_138811 ENSG00000153790 C7orf31 - chromosome 7 open reading frame 31 protein-coding 268-22 chr6 25087115 25087523 + 1.5 NA intron (NR_002174, intron 10 of 12) MIR|SINE|MIR -45031 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 396.5-4 chr1 167411569 167412004 + 1.5 NA intron (NM_001198783, intron 13 of 15) intron (NM_001198783, intron 13 of 15) 82716 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 219.5-30 chr4 104795462 104795723 + 1.5 NA Intergenic Intergenic -300698 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 363.5-13 chr18 66025676 66026100 + 1.5 NA Intergenic MLT2B1|LTR|ERVL 274876 NM_001317214 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 227.5-13 chr20 24206781 24206994 + 1.5 NA intron (NR_040102, intron 1 of 3) intron (NR_040102, intron 1 of 3) 7120 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 238.5-10 chr12 10704087 10704390 + 1.5 NA intron (NM_001145426, intron 5 of 8) intron (NM_001145426, intron 5 of 8) 19085 NM_003651 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 270.5-9 chr12 81278169 81278417 + 1.5 NA promoter-TSS (NR_120491) promoter-TSS (NR_120491) -896 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 374-29 chr5 39339841 39340297 + 1.5 NA intron (NM_001737, intron 4 of 10) intron (NM_001737, intron 4 of 10) 24426 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 140.5-10 chr14 79144825 79145020 + 1.5 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -55060 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 197.5-32 chr5 154623019 154623230 + 1.5 NA Intergenic L1MC5a|LINE|L1 -27052 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 326-9 chr10 66660759 66660978 + 1.5 NA intron (NM_001127384, intron 9 of 17) L2a|LINE|L2 -265168 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 280-6 chr11 23528825 23529032 + 1.5 NA Intergenic Intergenic -109738 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 211-17 chr3 114586204 114586497 + 1.5 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 37856 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 240 chr1 85693203 85693444 + 1.5 NA intron (NM_017953, intron 5 of 9) L1ME2z|LINE|L1 15110 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 136-9 chr5 109816092 109816300 + 1.5 NA intron (NM_002372, intron 12 of 21) Tigger18a|DNA|TcMar-Tigger -66986 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 383.5-3 chr10 118315155 118315475 + 1.5 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 27009 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 225-20 chr2 52202604 52202799 + 1.5 NA intron (NR_135237, intron 7 of 10) L1MA4A|LINE|L1 -167947 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 229.5-7 chr12 54476213 54476507 + 1.5 NA Intergenic Intergenic -2758 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 212.5-14 chr19 29117216 29117384 + 1.5 NA Intergenic Intergenic 95851 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 356.5-30 chr3 71356422 71356767 + 1.5 NA intron (NM_001349340, intron 3 of 19) MIR|SINE|MIR -51823 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 227-26 chr3 90042207 90042405 + 1.5 NA Intergenic Intergenic 934685 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 227-8 chr11 26276183 26276409 + 1.5 NA intron (NM_001313726, intron 1 of 27) MER5A|DNA|hAT-Charlie 11711 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 299.5-9 chr13 86911728 86912008 + 1.5 NA promoter-TSS (NR_132371) promoter-TSS (NR_132371) -52 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 130.5-11 chr18 8766609 8766728 + 1.5 NA intron (NM_015210, intron 4 of 16) intron (NM_015210, intron 4 of 16) 49287 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 151-12 chr4 42362922 42363083 + 1.5 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 28266 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 315.5-32 chr5 159849577 159849848 + 1.5 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 21672 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 383.5-13 chr2 118270257 118270583 + 1.5 NA Intergenic Intergenic -84034 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 284-22 chr20 31374775 31375089 + 1.5 NA Intergenic L1MEd|LINE|L1 6331 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 218-10 chr14 88472617 88472872 + 1.5 NA intron (NM_007039, intron 14 of 18) AluJb|SINE|Alu 82263 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 190-5 chr18 12912469 12912688 + 1.5 NA Intergenic CpG -28243 NM_080422 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 537.5-19 chr9 83111335 83111763 + 1.5 NA Intergenic L1MA9|LINE|L1 -48407 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 308-13 chr17 62350650 62350969 + 1.5 NA Intergenic Intergenic -19409 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 420-31 chr5 5254683 5255017 + 1.5 NA intron (NM_139056, intron 17 of 22) L1M5|LINE|L1 114520 NR_136935 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 145.5-12 chr14 63234489 63234651 + 1.5 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 30127 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 275-2 chr1 43974127 43974358 + 1.5 NA promoter-TSS (NM_004047) promoter-TSS (NM_004047) -718 NM_001294333 533 Hs.596514 NM_004047 ENSG00000117410 ATP6V0B ATP6F|HATPL|VMA16 ATPase H+ transporting V0 subunit b protein-coding 217.5-9 chr11 115275435 115275675 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -58022 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 430-37 chr8 6397526 6397873 + 1.5 NA Intergenic MER41-int|LTR|ERV1 8849 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 339.5-9 chr14 38724702 38725094 + 1.5 NA Intergenic L2|LINE|L2 -157698 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 210-3 chr11 83632546 83632755 + 1.5 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 49775 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 543-19 chr8 123128714 123129254 + 1.5 NA intron (NM_001363149, intron 14 of 21) intron (NM_001363149, intron 14 of 21) -50063 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 223-6 chr11 101485908 101486185 + 1.5 NA intron (NM_004621, intron 4 of 12) intron (NM_004621, intron 4 of 12) 33859 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 188.5-9 chr18 68549277 68549402 + 1.5 NA Intergenic Intergenic 165769 NM_001350512 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 406-3 chr11 27746058 27746421 + 1.5 NA Intergenic Intergenic -24209 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 265-10 chr14 90591475 90591698 + 1.5 NA intron (NM_001320421, intron 19 of 20) intron (NM_001320421, intron 19 of 20) -51043 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 127-5 chr20 33038323 33038418 + 1.5 NA intron (NM_174897, intron 8 of 14) (CCAT)n|Simple_repeat|Simple_repeat 6722 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 292.5-10 chr14 82237631 82237888 + 1.5 NA Intergenic Intergenic -404873 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 404.5-7 chr12 34633905 34634307 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 611610 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 428.5-14 chr2 62413413 62413756 + 1.5 NA Intergenic Intergenic 92611 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 301-29 chr3 145735377 145735683 + 1.5 NA Intergenic LTR8|LTR|ERV1 333655 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 196.5-4 chr12 4561129 4561327 + 1.5 NA promoter-TSS (NM_001371301) promoter-TSS (NM_001371301) -980 NM_001371301 325.5-31 chr8 81376651 81377118 + 1.5 NA Intergenic Intergenic 70555 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 236.5-9 chr11 81572904 81573110 + 1.5 NA Intergenic Intergenic 317829 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 308.5-16 chr17 73835202 73835565 + 1.5 NA Intergenic Intergenic -6846 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 549-15 chr6 37080115 37080694 + 1.5 NA Intergenic AluSx|SINE|Alu 74749 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 254-8 chr11 126897169 126897467 + 1.5 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -43428 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 322-23 chr8 141976988 141977396 + 1.5 NA Intergenic Intergenic -190879 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 433-25 chr5 122946248 122946799 + 1.5 NA intron (NM_014035, intron 3 of 6) intron (NM_014035, intron 3 of 6) 90202 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 461-24 chr5 18272006 18272462 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 464960 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 302-6 chr10 64321627 64321852 + 1.5 NA Intergenic Intergenic -503789 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 156.5-17 chr20 55040019 55040166 + 1.5 NA Intergenic L1MA9|LINE|L1 -382951 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 238-4 chr1 168066650 168066868 + 1.5 NA intron (NM_001017977, intron 17 of 18) intron (NM_001017977, intron 17 of 18) 68099 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 285.5-10 chr2 78950307 78950553 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -75272 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 121.5-9 chr2 99380734 99380907 + 1.5 NA intron (NM_015904, intron 12 of 23) HAL1M8|LINE|L1 43431 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 284-15 chr16 89770103 89770315 + 1.5 NA exon (NM_001286167, exon 25 of 43) exon (NM_001286167, exon 25 of 43) 46438 NM_001018112 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH FA complementation group A protein-coding 315-36 chr7 116671451 116671732 + 1.5 NA promoter-TSS (NM_001324401) promoter-TSS (NM_001324401) -605 NM_001324402 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 271.5-25 chr3 50603280 50603618 + 1.5 NA Intergenic Intergenic 8325 NM_145071 1154 Hs.655334 NM_013324 ENSG00000114737 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2 containing protein protein-coding 149-11 chr5 127874029 127874166 + 1.5 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 170708 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 555 chr1 77263908 77264458 + 1.5 NA Intergenic L2b|LINE|L2 -17836 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 206.5-17 chr15 44021748 44022010 + 1.5 NA intron (NM_032892, intron 1 of 13) L1MB4|LINE|L1 -143708 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 301-9 chr10 105367980 105368368 + 1.5 NA Intergenic Intergenic 452159 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 373 chr1 50773079 50773417 + 1.5 NA intron (NM_007051, intron 4 of 18) AluYk12|SINE|Alu 187019 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 368-14 chr18 22231506 22231840 + 1.5 NA Intergenic AluSz|SINE|Alu 62236 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 434.5-19 chr8 85942082 85942590 + 1.5 NA Intergenic Intergenic -114394 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 354.5-19 chr2 143388373 143388927 + 1.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 259231 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 223.5-19 chr18 77613093 77613360 + 1.5 NA Intergenic Intergenic 363378 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 241.5-26 chr4 99831173 99831343 + 1.5 NA intron (NM_001306151, intron 1 of 9) intron (NM_001306151, intron 1 of 9) 14431 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 211-4 chr11 77494721 77495035 + 1.5 NA Intergenic Intergenic -20815 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 265-11 chr15 85305997 85306296 + 1.5 NA Intergenic L1PB3|LINE|L1 65795 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 131.5-21 chr4 31241684 31241866 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 70631 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 294-17 chr16 77948699 77948919 + 1.5 NA intron (NM_020927, intron 7 of 8) MIR|SINE|MIR -73739 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 280-14 chr14 66479624 66479989 + 1.5 NA Intergenic Intergenic -6565 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 174-31 chr9 27442265 27442463 + 1.5 NA intron (NM_024761, intron 2 of 3) L2a|LINE|L2 -81950 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 273-31 chr6 90809590 90809828 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -222637 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 406-26 chr9 91276276 91276615 + 1.5 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 85479 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 231-13 chr2 55909432 55909657 + 1.5 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 14238 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 198-5 chr14 59305400 59305702 + 1.5 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 42110 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 391.5-27 chr4 10192024 10192324 + 1.5 NA Intergenic Intergenic -75375 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 307-33 chr8 27286626 27287019 + 1.5 NA 3' UTR (NM_001304495, exon 4 of 4) 3' UTR (NM_001304495, exon 4 of 4) 24450 NM_001362813 23087 Hs.104223 NM_171982 ENSG00000104228 TRIM35 HLS5|MAIR tripartite motif containing 35 protein-coding 355.5-20 chr7 29937662 29937977 + 1.5 NA intron (NM_001145514, intron 5 of 7) intron (NM_001145514, intron 5 of 7) 51982 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 330-15 chr14 82329574 82329821 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -312935 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 291.5-15 chr4 133389177 133389424 + 1.5 NA Intergenic L1MC4|LINE|L1 240006 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 249-19 chr21 42361099 42361329 + 1.5 NA Intergenic Intergenic 5321 NM_003225 7031 Hs.162807 NM_003225 ENSG00000160182 TFF1 BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2 trefoil factor 1 protein-coding 263.5-5 chr12 52457826 52458067 + 1.5 NA Intergenic L1PREC2|LINE|L1 -5800 NM_005555 3854 Hs.708950 NM_005555 ENSG00000185479 KRT6B CK-6B|CK6B|K6B|KRTL1|PC2|PC4 keratin 6B protein-coding 395.5-12 chr16 24370245 24370739 + 1.5 NA Intergenic Intergenic 114939 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 260.5-29 chr5 175154860 175155160 + 1.5 NA Intergenic L2c|LINE|L2 -159279 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 348.5-5 chr13 32098249 32098570 + 1.5 NA intron (NM_023037, intron 2 of 60) intron (NM_023037, intron 2 of 60) 66635 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 404-17 chr15 42955259 42955764 + 1.5 NA intron (NM_174916, intron 44 of 46) Charlie20a|DNA|hAT-Charlie -34733 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 252-17 chr22 17502462 17502801 + 1.5 NA intron (NM_001290046, intron 5 of 18) AluSx1|SINE|Alu -60808 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 270-10 chr17 5907003 5907220 + 1.5 NA intron (NR_040000, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger 134877 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 134.5-18 chr5 123622189 123622358 + 1.5 NA Intergenic L1MA3|LINE|L1 76856 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 327.5-13 chr19 47383271 47383755 + 1.5 NA TTS (NM_014681) TTS (NM_014681) 34198 NM_014681 9704 Hs.151706 NM_014681 ENSG00000134815 DHX34 DDX34|HRH1 DExH-box helicase 34 protein-coding 288.5-37 chr6 35156528 35156770 + 1.5 NA Intergenic L1ME1|LINE|L1 -15239 NM_001261820 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 291-23 chr6 77304187 77304564 + 1.5 NA Intergenic L1MA2|LINE|L1 159647 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 389-23 chr20 24806406 24806907 + 1.5 NA Intergenic Intergenic -142613 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 310.5-19 chr17 72449039 72449283 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 106350 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 302.5-23 chr20 14170856 14171090 + 1.5 NA intron (NM_001351663, intron 3 of 17) L1PBa|LINE|L1 166639 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 304.5-9 chr10 107289621 107289943 + 1.5 NA Intergenic AluSx|SINE|Alu -125076 NM_001206572 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 309-11 chr14 68944513 68944803 + 1.5 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 34644 NM_001130005 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 315.5-13 chr17 19316707 19316939 + 1.5 NA intron (NM_014964, intron 7 of 10) intron (NM_014964, intron 7 of 10) -10562 NR_048576 100874018 Hs.621672 NR_048576 ENSG00000235397 EPN2-AS1 - EPN2 antisense RNA 1 ncRNA 216 chr1 86063784 86064083 + 1.5 NA intron (NM_152890, intron 7 of 59) intron (NM_152890, intron 7 of 59) 92538 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 115 chr10 64744822 64744898 + 1.5 NA Intergenic Intergenic -80668 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 462.5-14 chr22 20075633 20076092 + 1.5 NA Intergenic MER31-int|LTR|ERV1 -4370 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 190.5-16 chr6 49129869 49130074 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 333282 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 172-6 chr14 73645788 73646005 + 1.5 NA intron (NM_031427, intron 1 of 7) intron (NM_031427, intron 1 of 7) 910 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 216-24 chr7 126301966 126302204 + 1.5 NA Intergenic MER66-int|LTR|ERV1 756099 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 133.5-14 chr2 233090495 233090606 + 1.5 NA intron (NM_001017915, intron 2 of 26).2 L4_A_Mam|LINE|RTE-X 30208 NM_005541 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 469.5-19 chr8 91145070 91145453 + 1.5 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) 42642 NM_001354470 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 202-27 chr8 120540489 120540720 + 1.5 NA intron (NM_021021, intron 6 of 6) intron (NM_021021, intron 6 of 6) 95185 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 373-41 chrX 131824579 131824828 + 1.5 NA intron (NR_026975, intron 2 of 12) intron (NR_026975, intron 2 of 12) 5940 NR_026975 286467 Hs.720385 NR_026975 ENSG00000213468 FIRRE LINC01200 firre intergenic repeating RNA element ncRNA 196-22 chr8 118611807 118612018 + 1.5 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -9089 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 271-5 chr14 20869028 20869331 + 1.5 NA Intergenic Intergenic -22224 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 228.5 chr1 49347728 49348008 + 1.5 NA intron (NR_136623, intron 2 of 12) AluSc|SINE|Alu 90457 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 308-23 chr3 46951013 46951425 + 1.5 NA intron (NM_144716, intron 2 of 7) L1MA7|LINE|L1 25282 NR_102269 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 327-28 chr2 181081114 181081558 + 1.5 NA Intergenic Intergenic -42501 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 251-35 chr8 76465038 76465403 + 1.5 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 58566 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 211-25 chr7 89472064 89472372 + 1.5 NA Intergenic L1MD1|LINE|L1 -647182 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 209.5-16 chr16 82952180 82952352 + 1.5 NA TTS (NR_110937) TTS (NR_110937) 38032 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 186-12 chr2 102785825 102786091 + 1.5 NA intron (NM_001321346, intron 3 of 3) intron (NM_001321346, intron 3 of 3) 23927 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 274-27 chr4 152847610 152847930 + 1.5 NA intron (NM_001025595, intron 2 of 8) intron (NM_001025595, intron 2 of 8) 67816 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 187.5 chr1 10372001 10372137 + 1.5 NA intron (NM_001365951, intron 45 of 48) L2|LINE|L2 -26995 NM_001304452 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 188.5-22 chr5 16702231 16702372 + 1.5 NA intron (NM_012334, intron 24 of 40) MLT1B|LTR|ERVL-MaLR -85243 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 242-10 chr14 67067968 67068289 + 1.5 NA intron (NM_001024218, intron 10 of 21) MIRc|SINE|MIR -121312 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 215.5-13 chr14 57699455 57699724 + 1.5 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) 165410 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 220 chr1 48644084 48644352 + 1.5 NA intron (NM_001323575, intron 8 of 12) intron (NM_001323575, intron 8 of 12) 132673 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 261.5-24 chr3 12256268 12256442 + 1.5 NA Intergenic L1PB1|LINE|L1 -31130 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 313-21 chr20 35578964 35579315 + 1.5 NA intron (NR_119376, intron 29 of 42) intron (NR_119376, intron 29 of 42) 28423 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4 (pseudogene) pseudo 187-22 chr4 36047977 36048145 + 1.5 NA intron (NR_146893, intron 33 of 36) intron (NR_146893, intron 33 of 36) 195878 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 394-7 chr14 43057555 43057898 + 1.5 NA Intergenic L1PA16|LINE|L1 1449557 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 524.5-5 chr14 79848929 79849527 + 1.5 NA intron (NM_138970, intron 5 of 5) L2|LINE|L2 -362191 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 325.5-23 chr4 163421557 163421847 + 1.5 NA Intergenic Intergenic 52052 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 397.5-4 chr10 24452656 24453053 + 1.5 NA intron (NM_001321681, intron 1 of 13) L1MA2|LINE|L1 3440 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 352-5 chr11 116610362 116610675 + 1.5 NA Intergenic Intergenic -28904 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 257.5-2 chr1 85451690 85451889 + 1.5 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 13370 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 499-2 chr1 161791832 161792299 + 1.5 NA intron (NM_007348, intron 5 of 15) intron (NM_007348, intron 5 of 15) 25745 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 305.5-34 chr6 125561073 125561399 + 1.5 NA Intergenic L1MA4|LINE|L1 -113117 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 153.5-15 chr9 99791325 99791490 + 1.5 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 28482 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 315.5-31 chr5 43831090 43831411 + 1.5 NA Intergenic Intergenic -228020 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 136-4 chr16 64645349 64645472 + 1.5 NA Intergenic Intergenic 476653 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 351 chr1 77142849 77143307 + 1.5 NA intron (NM_005482, intron 9 of 10) intron (NM_005482, intron 9 of 10) 76352 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 279.5-21 chr8 46144061 46144456 + 1.5 NA Intergenic GSAT|Satellite|centr 473385 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 209-19 chr20 47032471 47032732 + 1.5 NA intron (NM_172110, intron 5 of 13) L1ME3G|LINE|L1 -134366 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 354.5-18 chr2 137614089 137614633 + 1.5 NA intron (NM_001316349, intron 17 of 27) MIRc|SINE|MIR 313571 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 203.5-5 chr10 25649428 25649583 + 1.5 NA Intergenic Intergenic -2207 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 295.5-8 chr14 38897339 38897608 + 1.5 NA intron (NR_039982, intron 1 of 4) intron (NR_039982, intron 1 of 4) 14877 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 265.5-43 chr8 69231384 69231792 + 1.5 NA Intergenic L2a|LINE|L2 -127398 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 245.5-35 chr7 38877778 38878061 + 1.5 NA intron (NM_014396, intron 2 of 28) intron (NM_014396, intron 2 of 28) 31272 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 262-28 chr5 116408692 116409025 + 1.5 NA Intergenic Intergenic -34288 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 333-27 chr3 172184524 172184871 + 1.5 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 144166 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 469-26 chr8 131212343 131212818 + 1.5 NA Intergenic L1PB4|LINE|L1 -171671 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 280-20 chr2 44175215 44175484 + 1.5 NA intron (NM_177969, intron 1 of 4) intron (NM_177969, intron 1 of 4) 6474 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 155.5-4 chr13 51003974 51004113 + 1.5 NA intron (NR_003923, intron 16 of 16) intron (NR_003923, intron 16 of 16) 62114 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 291-9 chr14 65310421 65310768 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 24589 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 147.5 chr1 44419865 44420002 + 1.5 NA intron (NM_001319956, intron 2 of 14) intron (NM_001319956, intron 2 of 14) -4068 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 313-4 chr11 10718097 10718370 + 1.5 NA Intergenic Intergenic -24245 NM_001100163 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 269-4 chr1 226167292 226167511 + 1.5 NA intron (NM_022735, intron 1 of 7) intron (NM_022735, intron 1 of 7) 19340 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 364-21 chr21 29913034 29913393 + 1.5 NA intron (NM_000830, intron 1 of 16) MIRb|SINE|MIR 26783 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 262.5-24 chr8 31342718 31343043 + 1.5 NA Intergenic Intergenic -296872 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 450-5 chr12 78421906 78422342 + 1.5 NA Intergenic Intergenic -62378 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 276-38 chr4 174428827 174429212 + 1.5 NA Intergenic L2a|LINE|L2 5224 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 553.5-17 chr8 128553354 128553773 + 1.5 NA intron (NR_121672, intron 2 of 7) MIRc|SINE|MIR 11116 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 319-10 chr14 71293455 71293760 + 1.5 NA Intergenic L1ME3B|LINE|L1 -26869 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 434-21 chr5 152660965 152661336 + 1.5 NA intron (NR_109877, intron 4 of 4) intron (NR_109877, intron 4 of 4) -255871 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 117.5-13 chr2 128941256 128941404 + 1.5 NA Intergenic Intergenic 76730 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 318-35 chr5 122677058 122677418 + 1.5 NA intron (NR_109881, intron 8 of 11) AluSz|SINE|Alu 53322 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 256.5-22 chr3 24339324 24339581 + 1.5 NA intron (NM_001354708, intron 1 of 9) MIR|SINE|MIR -154635 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 338-30 chr5 72324225 72324646 + 1.5 NA intron (NM_001284403, intron 2 of 6) intron (NM_001284403, intron 2 of 6) 4062 NM_001284403 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 360-16 chr17 13048716 13048971 + 1.5 NA Intergenic Intergenic -30779 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 151.5-7 chr14 38792177 38792364 + 1.5 NA intron (NR_039982, intron 4 of 4) MIRb|SINE|MIR -90326 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 534.5-5 chr21 45548579 45549026 + 1.5 NA intron (NM_001352511, intron 1 of 5) L1ME2|LINE|L1 -6362 NM_001205206 6573 Hs.84190 NM_003056 ENSG00000173638 SLC19A1 CHMD|FOLT|IFC-1|IFC1|REFC|RFC|RFC1 solute carrier family 19 member 1 protein-coding 312.5 chr1 67855803 67856119 + 1.5 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -22494 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 246.5-29 chr4 15321577 15321781 + 1.5 NA intron (NR_125911, intron 1 of 5) intron (NR_125911, intron 1 of 5) -18309 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 379-23 chr2 117861273 117861748 + 1.5 NA Intergenic Intergenic 27779 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 245.5-34 chr7 18395389 18395640 + 1.5 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -100196 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 400-18 chr20 52325670 52326085 + 1.5 NA Intergenic MamRep137|DNA|TcMar-Tigger -133892 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 278-27 chr9 5127720 5127959 + 1.5 NA 3' UTR (NM_001322196, exon 24 of 24) 3' UTR (NM_001322196, exon 24 of 24) 57800 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 313-33 chr7 36547474 36547751 + 1.5 NA intron (NM_001177507, intron 14 of 19) MIRc|SINE|MIR 52508 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 194-6 chr17 62723315 62723528 + 1.5 NA intron (NM_001288780, intron 8 of 10) intron (NM_001288780, intron 8 of 10) 17215 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 511.5-19 chr6 121359846 121360204 + 1.5 NA Intergenic AluJr|SINE|Alu -25296 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 246.5-21 chr21 18602830 18603139 + 1.5 NA intron (NR_109925, intron 2 of 3) AluJr|SINE|Alu 83180 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 222-7 chr14 44806139 44806296 + 1.5 NA Intergenic L1MA10|LINE|L1 -7091 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 179-10 chr18 77726715 77726882 + 1.5 NA Intergenic Intergenic 266929 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 214.5-37 chr8 142156019 142156229 + 1.5 NA Intergenic Intergenic -20215 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 183.5-29 chr8 87848650 87848930 + 1.5 NA Intergenic L1MB7|LINE|L1 25225 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 157.5-9 chr2 69031883 69032019 + 1.5 NA intron (NM_032208, intron 1 of 17) LTR81B|LTR|Gypsy 18807 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 151-15 chr9 137931265 137931483 + 1.5 NA intron (NM_001243812, intron 6 of 45) MER51C|LTR|ERV1 15686 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 257-32 chr3 109118948 109119154 + 1.5 NA promoter-TSS (NM_014429) promoter-TSS (NM_014429) -917 NM_014429 27136 Hs.591296 NM_014429 ENSG00000114487 MORC1 CT33|MORC|ZCW6 MORC family CW-type zinc finger 1 protein-coding 214-18 chr7 77289074 77289375 + 1.5 NA intron (NM_020879, intron 17 of 18) intron (NM_020879, intron 17 of 18) -89405 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 282.5-4 chr1 215722779 215723163 + 1.5 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 155667 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 310.5-3 chr1 197992113 197992358 + 1.5 NA Intergenic Intergenic 74863 NM_001370213 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 265.5-12 chr13 45630780 45631023 + 1.5 NA Intergenic Intergenic -15162 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 332-12 chr17 75945064 75945480 + 1.5 NA 3' UTR (NM_007292, exon 14 of 14) 3' UTR (NM_007292, exon 14 of 14) -7040 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 179-7 chr14 50847732 50847914 + 1.5 NA Intergenic MER21C|LTR|ERVL -16702 NM_016350 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 242-27 chr7 846567 846863 + 1.5 NA intron (NM_025154, intron 5 of 17) AluJr4|SINE|Alu 5341 NM_001367708 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 247.5-14 chr16 79582662 79582846 + 1.5 NA Intergenic Intergenic 17983 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 274.5-21 chr7 69229504 69229934 + 1.5 NA Intergenic Intergenic 367905 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 271-29 chr8 135759746 135759939 + 1.5 NA Intergenic Intergenic 302386 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 314.5-32 chr6 90315094 90315574 + 1.5 NA Intergenic MIRb|SINE|MIR 2592 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 441.5-14 chr3 27784569 27785110 + 1.5 NA Intergenic Intergenic -12749 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 315.5-18 chr2 56871474 56871729 + 1.5 NA Intergenic Intergenic -685831 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 166.5-2 chr12 23745323 23745537 + 1.5 NA intron (NM_152989, intron 7 of 17) L2c|LINE|L2 -160844 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 296.5-13 chr2 64014554 64014925 + 1.5 NA intron (NM_001005739, intron 1 of 22) MIRc|SINE|MIR 4689 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 248.5-28 chr8 13121097 13121378 + 1.5 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -4993 NM_001164271 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 210-5 chr14 35898831 35898990 + 1.5 NA Intergenic L1M2|LINE|L1 72572 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 257.5-24 chr20 53521040 53521388 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie -31556 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 423-32 chr5 78594104 78594565 + 1.5 NA intron (NM_005779, intron 2 of 4) MIR|SINE|MIR 54438 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 533.5-6 chr2 34321172 34321757 + 1.5 NA Intergenic Intergenic 254238 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 200.5-24 chr5 138825121 138825334 + 1.5 NA intron (NM_001323985, intron 6 of 17) intron (NM_001323985, intron 6 of 17) -50003 NM_001323991 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 275-40 chr8 123359887 123360140 + 1.5 NA intron (NM_014109, intron 9 of 27) MIR|SINE|MIR -11883 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 223.5-16 chr17 33386647 33386851 + 1.5 NA intron (NM_001094, intron 1 of 9) L2|LINE|L2 -93761 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 349.5-28 chr6 124318791 124319148 + 1.5 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 35964 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 525.5-12 chr4 93628422 93628903 + 1.5 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -200091 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 399-8 chr11 123311146 123311697 + 1.5 NA Intergenic Intergenic -47001 NM_001367419 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 370.5-14 chr2 31984925 31985241 + 1.5 NA intron (NR_126034, intron 1 of 6) intron (NR_126034, intron 1 of 6) 25581 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 182.5-26 chr5 73103439 73103569 + 1.5 NA Intergenic MER72|LTR|ERV1 -17071 NM_001161342 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 232.5-7 chr10 67820335 67820539 + 1.5 NA intron (NM_021800, intron 2 of 4) L1ME3|LINE|L1 17742 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 354-28 chr7 28287504 28287844 + 1.5 NA Intergenic MER45A|DNA|hAT-Tip100 -11647 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 300-3 chr1 80471162 80471470 + 1.5 NA Intergenic Intergenic -64439 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 206-4 chr10 61443104 61443269 + 1.5 NA intron (NR_134508, intron 1 of 6) AluY|SINE|Alu -9453 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 378-32 chr9 105096252 105096564 + 1.5 NA Intergenic AluSp|SINE|Alu -148197 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 180.5-22 chr8 130674500 130674710 + 1.5 NA Intergenic Intergenic -230931 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 215-32 chr8 120472578 120472815 + 1.5 NA intron (NM_022045, intron 11 of 21) MLT1H|LTR|ERVL-MaLR 27277 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 407-3 chr1 241858486 241858800 + 1.5 NA exon (NM_006027, exon 6 of 14) exon (NM_006027, exon 6 of 14) 9912 NM_006027 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 253-28 chr5 3204559 3204738 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 26813 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 210.5-24 chr5 119928160 119928314 + 1.5 NA Intergenic L1PA15|LINE|L1 298678 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 219.5-8 chr12 112269075 112269238 + 1.5 NA intron (NM_001109662, intron 13 of 75) AluYg6|SINE|Alu -105835 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 465.5-3 chr10 109809109 109809477 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 113953 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 231.5-32 chr7 106029427 106029581 + 1.5 NA intron (NM_152750, intron 17 of 18) MIRc|SINE|MIR 66240 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 232.5-9 chr10 110942491 110942747 + 1.5 NA intron (NR_136749, intron 1 of 7) intron (NR_136749, intron 1 of 7) -5364 NR_026715 644511 Hs.632083 NR_026715 ENSG00000234118 RPL13AP6 RPL13A_7_1096|bA348N5.5 ribosomal protein L13a pseudogene 6 pseudo 402.5-25 chr5 63428225 63428580 + 1.5 NA Intergenic L1MC5|LINE|L1 533890 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 324.5-27 chr3 72682806 72683104 + 1.5 NA Intergenic Intergenic -18706 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 240-43 chr7 46021121 46021419 + 1.5 NA Intergenic L1MEd|LINE|L1 -99998 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 332.5-19 chr7 15808688 15809042 + 1.5 NA Intergenic L1MEc|LINE|L1 120487 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 506.5-7 chr2 163992676 163993154 + 1.5 NA Intergenic Intergenic -256907 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 141-2 chr15 57365057 57365173 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -11390 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 618-2 chr1 97893508 97894114 + 1.5 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 27248 NM_000110 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 129-4 chr2 146550216 146550361 + 1.5 NA Intergenic MER39B|LTR|ERV1 -36769 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 191-13 chr8 70150770 70150967 + 1.5 NA intron (NM_001321711, intron 11 of 21) intron (NM_001321711, intron 11 of 21) -79616 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 689-3 chr13 22042203 22042865 + 1.5 NA Intergenic L1MEd|LINE|L1 -164374 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 201-4 chr10 71074897 71075072 + 1.5 NA Intergenic Intergenic 135931 NR_134314 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 338-7 chr11 112306892 112307214 + 1.5 NA intron (NR_126004, intron 2 of 3) MER45A|DNA|hAT-Tip100 36304 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 287-42 chr7 85802346 85802630 + 1.5 NA Intergenic Intergenic 381366 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 368-16 chr2 19645428 19645857 + 1.5 NA Intergenic L2b|LINE|L2 -223212 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 403-35 chr7 116270575 116271030 + 1.5 NA Intergenic Intergenic 15862 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 273.5-29 chr7 114035939 114036142 + 1.5 NA Intergenic L1MB8|LINE|L1 -50287 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 384.5-19 chr4 148796095 148796414 + 1.5 NA Intergenic Intergenic 146124 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 152.5-14 chr15 71014721 71014903 + 1.5 NA intron (NM_017691, intron 14 of 15) L1M5|LINE|L1 122369 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 142-5 chr2 10604861 10604966 + 1.5 NA intron (NR_048552, intron 13 of 19) MER103C|DNA|hAT-Charlie 85062 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 156.5-18 chr3 97298300 97298463 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -141226 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 436-16 chr2 72090271 72090718 + 1.5 NA Intergenic L3|LINE|CR1 57368 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 323-27 chr8 126919811 126920056 + 1.5 NA Intergenic L1ME1|LINE|L1 -93221 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 299.5-23 chr20 44826063 44826494 + 1.5 NA Intergenic L1ME4a|LINE|L1 -15732 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 203-8 chr18 71158788 71159015 + 1.5 NA Intergenic Intergenic 420055 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 311.5-26 chr2 232210103 232210337 + 1.5 NA intron (NR_046477, intron 8 of 18) intron (NR_046477, intron 8 of 18) 37567 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 628-9 chr2 77746371 77746864 + 1.5 NA intron (NR_110288, intron 3 of 3) L1MEj|LINE|L1 -169317 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 309-15 chr17 66474538 66474857 + 1.5 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -57843 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 146-11 chr6 107278683 107278880 + 1.5 NA intron (NM_020381, intron 2 of 7) intron (NM_020381, intron 2 of 7) -163266 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 198.5-11 chr19 30268276 30268545 + 1.5 NA Intergenic Intergenic -103974 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 173-15 chr5 35508092 35508277 + 1.5 NA Intergenic LTR17|LTR|ERV1 -109679 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 281.5-7 chr13 69619147 69619390 + 1.5 NA Intergenic LTR16C|LTR|ERVL 396922 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 317-27 chr7 101977143 101977415 + 1.5 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 159653 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 294.5-8 chr11 5063113 5063417 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -3638 NM_001005164 119678 Hs.553557 NM_001005164 ENSG00000176787 OR52E2 - olfactory receptor family 52 subfamily E member 2 protein-coding 374-25 chr4 137805963 137806375 + 1.5 NA Intergenic Intergenic 260438 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 295-41 chr6 73102406 73102774 + 1.5 NA intron (NM_001160132, intron 5 of 13) L1MA3|LINE|L1 40924 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 375.5-3 chr10 50598672 50599031 + 1.5 NA intron (NM_147156, intron 1 of 10) intron (NM_147156, intron 1 of 10) 25105 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 409-30 chr7 39398986 39399352 + 1.5 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 7177 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 441-20 chr2 155512215 155512708 + 1.5 NA Intergenic L1MC4|LINE|L1 742470 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 291-4 chr11 88779259 88779606 + 1.5 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 268640 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 159.5-21 chr3 9897028 9897134 + 1.5 NA Intergenic Intergenic -5531 NM_153483 132014 Hs.390823 NM_144640 ENSG00000163701 IL17RE - interleukin 17 receptor E protein-coding 421-30 chr5 120921228 120921764 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 390032 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 420-22 chr2 236292853 236293217 + 1.5 NA Intergenic Intergenic -28690 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 445-30 chr7 67539266 67539768 + 1.5 NA Intergenic Intergenic 203541 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 272-13 chr19 28630996 28631211 + 1.5 NA intron (NR_110759, intron 5 of 9) L1MA5A|LINE|L1 24415 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 289.5-17 chr16 55305929 55306297 + 1.5 NA Intergenic MIRb|SINE|MIR -18446 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 189.5-14 chr2 232969823 232969987 + 1.5 NA intron (NM_019850, intron 3 of 14) FLAM_C|SINE|Alu -41754 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 140-9 chr3 88227059 88227218 + 1.5 NA Intergenic Eulor12|DNA?|DNA? 77179 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 204.5-32 chr9 82796785 82796935 + 1.5 NA Intergenic L1ME3A|LINE|L1 266282 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 201-11 chr17 58982247 58982532 + 1.5 NA TTS (NM_001320989) TTS (NM_001320989) 124491 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 289.5-35 chr7 23915614 23915994 + 1.5 NA Intergenic MIRb|SINE|MIR 205585 NR_048542 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 167-11 chr5 113742179 113742300 + 1.5 NA Intergenic L2b|LINE|L2 228545 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 485.5-5 chr19 49076134 49076568 + 1.5 NA Intergenic AluJo|SINE|Alu -3410 NM_031886 3743 Hs.306973 NM_031886 ENSG00000104848 KCNA7 HAK6|KV1.7 potassium voltage-gated channel subfamily A member 7 protein-coding 235.5-7 chr12 46156346 46156530 + 1.5 NA Intergenic L1MEh|LINE|L1 110078 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 482-22 chr9 83234598 83235017 + 1.5 NA Intergenic MER97b|DNA|hAT-Tip100 32461 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 415-21 chr2 230555648 230556014 + 1.5 NA Intergenic Intergenic 139075 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 337.5-9 chr16 49046476 49046755 + 1.5 NA Intergenic MLT2D|LTR|ERVL 235223 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 138.5-15 chr5 44188178 44188306 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -200490 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 237-8 chr2 30775164 30775422 + 1.5 NA intron (NM_144575, intron 4 of 22) L1M5|LINE|L1 32153 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 288-4 chr11 77506554 77506968 + 1.5 NA Intergenic Intergenic -32698 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 356-18 chr19 30266894 30267341 + 1.5 NA Intergenic Intergenic -105267 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 182-6 chr12 74050563 74050702 + 1.5 NA Intergenic Intergenic 241999 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 206.5-33 chr5 16138378 16138601 + 1.5 NA intron (NM_001102562, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 41302 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 298.5-19 chr4 182679968 182680212 + 1.5 NA intron (NM_001080477, intron 8 of 27) intron (NM_001080477, intron 8 of 27) 237163 NM_001351744 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 489.5-4 chr10 64291063 64291490 + 1.5 NA Intergenic Intergenic -534252 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 213.5-12 chr14 39370699 39370968 + 1.5 NA intron (NM_001354155, intron 22 of 22) intron (NM_001354155, intron 22 of 22) 61667 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 268.5-10 chr15 77346796 77347087 + 1.5 NA intron (NM_024776, intron 1 of 7) L2a|LINE|L2 73163 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 169.5-12 chr21 25210566 25210734 + 1.5 NA Intergenic Intergenic 221051 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 184-7 chr5 41931 42176 + 1.5 NA Intergenic Intergenic -50115 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 505.5-9 chr14 67285940 67286515 + 1.5 NA intron (NM_001256550, intron 3 of 14) intron (NM_001256550, intron 3 of 14) 44792 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 273-4 chr10 129065870 129066113 + 1.5 NA Intergenic Intergenic 153158 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 205-29 chr8 99130682 99130921 + 1.5 NA intron (NM_017890, intron 8 of 61) intron (NM_017890, intron 8 of 61) 117535 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 225.5-31 chr5 90364479 90364740 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR 45177 NM_001297765 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 218.5-35 chr8 144204228 144204512 + 1.5 NA intron (NM_001288814, intron 11 of 41) AluJo|SINE|Alu 55725 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 233-5 chr10 67929936 67930235 + 1.5 NA intron (NM_001278185, intron 22 of 23) AluSp|SINE|Alu 38683 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 237-31 chr8 141484402 141484704 + 1.5 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 22676 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 311.5-35 chr5 41044658 41045046 + 1.5 NA intron (NM_173489, intron 18 of 41) intron (NM_173489, intron 18 of 41) 26490 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 254.5-8 chr11 99523544 99523716 + 1.5 NA intron (NM_001243271, intron 2 of 20) (ATAGA)n|Simple_repeat|Simple_repeat -32515 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 306.5-33 chr5 60330406 60330757 + 1.5 NA intron (NM_001364599, intron 1 of 16) L2b|LINE|L2 42082 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 243-27 chr5 128087570 128087863 + 1.5 NA intron (NM_001046, intron 1 of 26) L2c|LINE|L2 3950 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 177.5-20 chr3 153848279 153848407 + 1.5 NA Intergenic MIR|SINE|MIR -85817 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 508.5-20 chr6 47630137 47630702 + 1.5 NA Intergenic Intergenic -26053 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 192.5 chr1 75413428 75413640 + 1.5 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 197580 NM_001320287 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 283.5-37 chr8 130271937 130272379 + 1.5 NA intron (NM_001362925, intron 3 of 29) AluJb|SINE|Alu 24375 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 370-24 chr3 114470007 114470375 + 1.5 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 16598 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 606.5 chr10 54373117 54373684 + 1.5 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -112830 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 410-29 chr6 89474518 89474949 + 1.5 NA intron (NM_001242809, intron 1 of 15) intron (NM_001242809, intron 1 of 15) 41555 NM_014942 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 297-14 chr2 48594421 48594790 + 1.5 NA intron (NM_172311, intron 3 of 10) L2a|LINE|L2 14018 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 297.5-20 chr2 180270086 180270307 + 1.5 NA Intergenic L1P4|LINE|L1 -262899 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 288.5-8 chr1 235014543 235014850 + 1.5 NA Intergenic L2a|LINE|L2 -50697 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 432-27 chr8 125077958 125078331 + 1.5 NA intron (NM_014846, intron 6 of 28) intron (NM_014846, intron 6 of 28) 13648 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 351-11 chr14 75103371 75103870 + 1.5 NA intron (NM_033116, intron 14 of 21) L1ME3|LINE|L1 23428 NM_001329238 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 431-12 chr18 14917664 14918288 + 1.5 NA Intergenic Intergenic -28291 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 257.5-36 chr5 154023281 154023516 + 1.5 NA intron (NM_001317993, intron 9 of 14) L1PB1|LINE|L1 15512 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 206-9 chr2 26241635 26241819 + 1.5 NA intron (NM_000182, intron 1 of 19) intron (NM_000182, intron 1 of 19) 2905 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 335-36 chr22 19527081 19527392 + 1.5 NA Intergenic Intergenic -1899 NM_003277 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 191-15 chr8 140087506 140087723 + 1.5 NA intron (NM_001160372, intron 17 of 22) L2b|LINE|L2 12921 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 226-17 chr4 180326692 180326896 + 1.5 NA Intergenic L1MD2|LINE|L1 832355 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 311.5-11 chr11 24532201 24532577 + 1.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 35336 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 216.5-10 chr11 115479942 115480207 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 24341 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 399-15 chr15 77403837 77404218 + 1.5 NA intron (NM_024776, intron 1 of 7) L1PA15|LINE|L1 16077 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 324.5-32 chr5 14852450 14852715 + 1.5 NA intron (NM_054027, intron 1 of 11) L1PREC2|LINE|L1 19196 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 206.5-39 chr8 77353952 77354174 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -96634 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 284.5-41 chr8 63695730 63696072 + 1.5 NA Intergenic L1MB7|LINE|L1 -73529 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 345-22 chr2 69250705 69250999 + 1.5 NA Intergenic Intergenic 136375 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 462-2 chr1 102887799 102888264 + 1.5 NA intron (NM_001854, intron 62 of 66) MLT1B|LTR|ERVL-MaLR 220465 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 297.5-35 chr8 108300382 108300639 + 1.5 NA Intergenic Intergenic -51793 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 128-7 chr7 28586644 28586741 + 1.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -99441 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 353-39 chr8 128535404 128535765 + 1.5 NA intron (NR_121672, intron 2 of 7) MLT1C|LTR|ERVL-MaLR 29095 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 341.5-23 chr22 41756412 41756883 + 1.5 NA intron (NM_152513, intron 17 of 30) AluSx1|SINE|Alu -43975 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 154.5-11 chr20 48352813 48352999 + 1.5 NA Intergenic Intergenic -7005 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 267-2 chr1 179913248 179913588 + 1.5 NA intron (NM_001267578, intron 8 of 9) intron (NM_001267578, intron 8 of 9) 31376 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 414-29 chr4 99951875 99952246 + 1.5 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 1566 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 338-11 chr16 78896136 78896574 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 704382 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 240.5-6 chr15 49646047 49646268 + 1.5 NA 3' UTR (NM_001144955, exon 5 of 5) 3' UTR (NM_001144955, exon 5 of 5) 25109 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 200.5-32 chrX 66880637 66880817 + 1.5 NA Intergenic L1M4|LINE|L1 -241429 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 242.5-27 chr5 2176789 2177130 + 1.5 NA Intergenic Intergenic 135242 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 317-15 chr20 20362248 20362611 + 1.5 NA Intergenic Intergenic -5675 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 157-15 chr5 107446144 107446325 + 1.5 NA intron (NM_001962, intron 1 of 4) MIR|SINE|MIR 224703 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 174.5-27 chr4 135262032 135262259 + 1.5 NA Intergenic L2a|LINE|L2 -138586 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 203.5-25 chr5 128861629 128861815 + 1.5 NA Intergenic Intergenic -103405 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 182.5-29 chr7 129049637 129049791 + 1.5 NA intron (NR_034053, intron 1 of 23) HAL1|LINE|L1 5459 NR_034053 23534 Hs.193613 NM_012470 ENSG00000064419 TNPO3 IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR transportin 3 protein-coding 609-22 chr8 129346962 129347567 + 1.5 NA Intergenic L1MEf|LINE|L1 -106024 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 343-2 chr10 32633836 32634131 + 1.5 NA intron (NM_001321115, intron 19 of 43) L1MC5a|LINE|L1 187843 NR_109827 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 199.5-18 chr2 53233606 53233765 + 1.5 NA Intergenic Intergenic -531070 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 435.5-12 chr4 24851385 24851799 + 1.5 NA intron (NM_001130726, intron 4 of 11) A-rich|Low_complexity|Low_complexity 56019 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 136-11 chr8 52001952 52002042 + 1.5 NA Intergenic Intergenic -102811 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 197-23 chr6 51555853 51556130 + 1.5 NA Intergenic Intergenic -65879 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 602.5-2 chr10 23179770 23180479 + 1.5 NA Intergenic AluJb|SINE|Alu -12188 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 275-16 chr16 70151875 70152196 + 1.5 NA intron (NM_001322119, intron 15 of 16) intron (NM_001322119, intron 15 of 16) 21413 NR_126007 400541 Hs.461183 NR_126007 ENSG00000247228 LOC400541 - uncharacterized LOC400541 ncRNA 360.5-22 chr5 105643998 105644382 + 1.5 NA Intergenic L1PA15|LINE|L1 544716 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 177.5-21 chr4 27128517 27128647 + 1.5 NA Intergenic AluSx|SINE|Alu -88897 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 250.5-42 chr8 111126566 111126888 + 1.5 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -99294 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 300.5-27 chr22 35133257 35133513 + 1.5 NA intron (NR_126356, intron 4 of 5) MIRc|SINE|MIR 67227 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 220-8 chr14 21921739 21921987 + 1.5 NA Intergenic MER110-int|LTR|ERV1 -250846 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 404-23 chr2 203228221 203228650 + 1.5 NA Intergenic MLT2B2|LTR|ERVL -10006 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 197-21 chr4 79454715 79454948 + 1.5 NA Intergenic Intergenic -37762 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 313.5-32 chr5 21205177 21205559 + 1.5 NA Intergenic Intergenic -254112 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 330-22 chr2 62239533 62239786 + 1.5 NA Intergenic Intergenic 24138 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 201-8 chr13 33715951 33716116 + 1.5 NA Intergenic L1M1|LINE|L1 -39239 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 335.5-16 chr2 31256855 31257289 + 1.5 NA intron (NM_014600, intron 3 of 5) intron (NM_014600, intron 3 of 5) 22920 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 370.5-27 chr8 92175322 92175711 + 1.5 NA Intergenic L1MEi|LINE|L1 -72131 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 193.5-22 chr4 43863161 43863333 + 1.5 NA Intergenic Intergenic -153614 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 233.5 chr1 58660046 58660394 + 1.5 NA intron (NM_001085487, intron 19 of 19) intron (NM_001085487, intron 19 of 19) 39842 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 308-26 chr5 21010484 21010783 + 1.5 NA Intergenic Intergenic -395098 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 160 chr1 8262976 8263094 + 1.5 NA Intergenic Intergenic 54363 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 349-32 chr5 171703806 171704203 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -81868 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 331-17 chr14 21124325 21124695 + 1.5 NA Intergenic L1MA8|LINE|L1 -19806 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 148.5-3 chr1 168853733 168853919 + 1.5 NA Intergenic L1MEg|LINE|L1 66885 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 286-4 chr11 31845633 31846020 + 1.5 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 19259 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 118.5-14 chr6 163578657 163578790 + 1.5 NA TTS (NM_001301085) TTS (NM_001301085) 92761 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 361-18 chr19 15345813 15346309 + 1.5 NA Intergenic AluJo|SINE|Alu -13522 NM_001330384 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 129.5-18 chr6 93238987 93239126 + 1.5 NA TTS (NM_001288629) TTS (NM_001288629) 180503 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 189-22 chr7 19429799 19430087 + 1.5 NA Intergenic AluSg|SINE|Alu 275493 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 269-23 chr2 162196652 162197092 + 1.5 NA intron (NM_004460, intron 16 of 25) intron (NM_004460, intron 16 of 25) -44625 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 258-15 chr2 170562574 170562788 + 1.5 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 151886 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 345.5-34 chr8 102077356 102077848 + 1.5 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 46732 NM_001040624 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 360-17 chr17 22311911 22312416 + 1.5 NA Intergenic AluSz|SINE|Alu 13399 NR_028336 284123 Hs.348578 NM_203392 ENSG00000178130 FAM27E5 FAM27L family with sequence similarity E5 ncRNA 160.5-5 chr1 235279770 235279912 + 1.5 NA intron (NR_135074, intron 2 of 24) MER68|LTR|ERVL 47646 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 225.5-22 chr2 162991263 162991619 + 1.5 NA Intergenic MIRb|SINE|MIR -152674 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 275-36 chr7 43388526 43388977 + 1.5 NA intron (NM_001287059, intron 5 of 27) AluSz6|SINE|Alu 133791 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 209-2 chr1 149962634 149962867 + 1.5 NA intron (NM_020205, intron 6 of 11) intron (NM_020205, intron 6 of 11) -25871 NM_001145862 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 313.5-19 chr2 142774006 142774236 + 1.5 NA Intergenic L1MA2|LINE|L1 -103543 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 180.5-19 chr6 73619331 73619500 + 1.5 NA intron (NM_012434, intron 7 of 10) AluJb|SINE|Alu 34577 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 217-22 chr6 71230268 71230581 + 1.5 NA Intergenic Tigger3|DNA|TcMar-Tigger -58387 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 363-9 chr11 84681433 84681822 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 39315 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237-33 chrX 48495011 48495243 + 1.5 NA Intergenic LTR37A|LTR|ERV1 13712 NR_135596 101927635 Hs.522635 NR_135596 ENSG00000224292 LOC101927635 - uncharacterized LOC101927635 ncRNA 182.5-20 chr3 77707625 77707853 + 1.5 NA Intergenic Intergenic 341224 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 379.5-4 chr11 37292231 37292565 + 1.5 NA Intergenic L2c|LINE|L2 -646203 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 187.5-15 chr20 9052238 9052493 + 1.5 NA Intergenic Intergenic -16689 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 350-33 chr6 24235495 24235812 + 1.5 NA intron (NM_016356, intron 7 of 9) L1PA16|LINE|L1 109438 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 269-21 chr2 81094374 81094613 + 1.5 NA Intergenic L1MEc|LINE|L1 372453 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 244.5-20 chr2 105580177 105580417 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie 30262 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 572.5-2 chr1 226558234 226558738 + 1.5 NA intron (NM_001003665, intron 1 of 3) intron (NM_001003665, intron 1 of 3) 9722 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 162-9 chr22 33060119 33060313 + 1.5 NA Intergenic MER102c|DNA|hAT-Charlie -1835 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 324.5-7 chr10 41742679 41742964 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 625224 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 247.5-10 chr13 49634680 49634908 + 1.5 NA TTS (NM_138450) TTS (NM_138450) 6287 NM_138450 115761 Hs.558599 NM_138450 ENSG00000152213 ARL11 ARLTS1 ADP ribosylation factor like GTPase 11 protein-coding 139-3 chr10 125318178 125318270 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -157194 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 323.5-6 chr10 70331120 70331394 + 1.5 NA intron (NR_103467, intron 1 of 2) MIRb|SINE|MIR 45522 NM_001278213 55222 Hs.7778 NM_018205 ENSG00000172731 LRRC20 - leucine rich repeat containing 20 protein-coding 217.5-14 chr14 58653941 58654179 + 1.5 NA Intergenic L1ME1|LINE|L1 15223 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 172.5-14 chr4 65990453 65990689 + 1.5 NA Intergenic L1MEd|LINE|L1 -286253 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 414.5-5 chr10 86259040 86259513 + 1.5 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 5512 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 158-8 chr20 16388091 16388236 + 1.5 NA intron (NM_001199866, intron 17 of 22) intron (NM_001199866, intron 17 of 22) 185285 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 168.5-12 chr16 84108515 84108690 + 1.5 NA intron (NM_003791, intron 1 of 22) intron (NM_003791, intron 1 of 22) 8340 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 338.5-26 chr6 5328604 5328867 + 1.5 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 67222 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 363.5-25 chr5 176779156 176779446 + 1.5 NA Intergenic Intergenic -31258 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 netrin receptor A protein-coding 282.5-14 chr14 57417786 57417976 + 1.5 NA Intergenic Intergenic 27295 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 286-10 chr14 67812698 67812945 + 1.5 NA intron (NM_015346, intron 3 of 41) intron (NM_015346, intron 3 of 41) 3769 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 176.5-8 chr19 56213006 56213296 + 1.5 NA Intergenic AluSx|SINE|Alu 7237 NM_001358413 649137 NM_001358413 ENSG00000204532 ZSCAN5C ZNF495C|ZSCAN5CP zinc finger and SCAN domain containing 5C protein-coding 182-12 chr5 33186601 33186788 + 1.5 NA Intergenic L1M4b|LINE|L1 -43041 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 166.5-13 chr2 128653152 128653351 + 1.5 NA Intergenic L1MD1|LINE|L1 -211349 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 138.5-3 chr10 120536458 120536588 + 1.5 NA intron (NM_001030059, intron 5 of 6) L1MA9|LINE|L1 -61426 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 382.5-3 chr11 58560090 58560564 + 1.5 NA intron (NM_001307951, intron 2 of 7) intron (NM_001307951, intron 2 of 7) 15590 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 552-25 chr9 37608651 37609209 + 1.5 NA intron (NM_001371225, intron 1 of 15) intron (NM_001371225, intron 1 of 15) 5701 NM_001371224 250-11 chr14 76024666 76024967 + 1.5 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 39053 NM_001255995 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 326.5-13 chr14 50398701 50398990 + 1.5 NA Intergenic AluSx|SINE|Alu -1547 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 351-40 chr8 126573898 126574259 + 1.5 NA Intergenic Intergenic -15600 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 162-2 chr14 42755073 42755232 + 1.5 NA Intergenic Intergenic 1148296 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 326.5-35 chr8 103655150 103655557 + 1.5 NA intron (NM_001348488, intron 3 of 25) intron (NM_001348488, intron 3 of 25) -153443 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 484.5-17 chr4 97505230 97505654 + 1.5 NA Intergenic Intergenic 138516 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 306.5-34 chr5 86468949 86469355 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -148789 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 316-26 chr3 67243542 67243962 + 1.5 NA Intergenic MER103C|DNA|hAT-Charlie 18288 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 387.5-6 chr12 102041567 102041979 + 1.5 NA intron (NM_016053, intron 4 of 6) intron (NM_016053, intron 4 of 6) 20218 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 306.5-37 chr8 83387989 83388319 + 1.5 NA Intergenic Intergenic -15604 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 252.5-5 chr10 77527843 77528068 + 1.5 NA intron (NM_001271519, intron 1 of 28) MIR|SINE|MIR 109853 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 381.5-28 chr9 31860423 31860724 + 1.5 NA Intergenic L1ME3B|LINE|L1 -479083 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 208.5-6 chr15 68184731 68185050 + 1.5 NA intron (NM_016166, intron 13 of 13) Tigger3|DNA|TcMar-Tigger 21220 NM_001286695 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 285-29 chr8 526058 526448 + 1.5 NA intron (NM_001256113, intron 1 of 3) AluSz6|SINE|Alu -10501 NM_001369716 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 139.5-20 chr6 165105209 165105356 + 1.5 NA Intergenic L2a|LINE|L2 204323 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 272.5-22 chr2 106027967 106028284 + 1.5 NA Intergenic Intergenic -37563 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 324-13 chr14 62716359 62716729 + 1.5 NA intron (NM_172375, intron 9 of 9) L2c|LINE|L2 328914 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 203-28 chr8 82730772 82731021 + 1.5 NA Intergenic Intergenic -181208 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 387-28 chr5 133464017 133464602 + 1.5 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -36603 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 459-26 chr5 153209427 153209897 + 1.5 NA Intergenic Intergenic -237313 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 163.5-8 chr2 108882812 108882944 + 1.5 NA intron (NM_001351557, intron 12 of 12) intron (NM_001351557, intron 12 of 12) 96107 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 313-6 chr11 74857926 74858276 + 1.5 NA intron (NM_001270381, intron 9 of 15) L1MCc|LINE|L1 90990 NM_001270381 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 274-17 chr2 241451373 241451725 + 1.5 NA intron (NM_014808, intron 13 of 26) intron (NM_014808, intron 13 of 26) -26356 NR_036083 100422942 NR_036083 ENSG00000263752 MIR3133 - microRNA 3133 ncRNA 156.5-8 chr15 68433746 68433904 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -1662 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 222-27 chr8 141715157 141715324 + 1.5 NA Intergenic MIRc|SINE|MIR 71073 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 203-6 chr17 69493661 69493828 + 1.5 NA intron (NM_002758, intron 1 of 11) AluSx|SINE|Alu -8212 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 463.5-20 chr5 52835916 52836511 + 1.5 NA intron (NM_181501, intron 1 of 28) intron (NM_181501, intron 1 of 28) 48297 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 114.5-13 chr8 136559150 136559226 + 1.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 28390 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 331.5-6 chr10 68708418 68708770 + 1.5 NA Intergenic L1ME4b|LINE|L1 -12645 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 292-37 chr9 88175554 88175831 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -37211 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 176.5-31 chr8 68767508 68767672 + 1.5 NA intron (NM_001349479, intron 9 of 11) HAL1M8|LINE|L1 336600 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 319-18 chr2 46851279 46851690 + 1.5 NA intron (NR_024452, intron 1 of 2) intron (NR_024452, intron 1 of 2) 23620 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 261-10 chr2 59122772 59123112 + 1.5 NA Intergenic L1PA5|LINE|L1 -94766 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 289.5-15 chr12 127439225 127439594 + 1.5 NA Intergenic Intergenic -99337 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 333-43 chr9 69901007 69901321 + 1.5 NA intron (NM_001010940, intron 5 of 5) AluY|SINE|Alu 80347 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 267.5-19 chr4 94289269 94289701 + 1.5 NA exon (NM_020159, exon 24 of 24) exon (NM_020159, exon 24 of 24) 36176 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 231-26 chr7 6138540 6138702 + 1.5 NA intron (NM_032172, intron 4 of 17) MER1B|DNA|hAT-Charlie 33516 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 259-6 chr12 3507870 3508252 + 1.5 NA intron (NM_019854, intron 1 of 9) MIRb|SINE|MIR -15242 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 180-17 chr8 120631997 120632152 + 1.5 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -129179 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 568.5-10 chr5 22964488 22965062 + 1.5 NA Intergenic L1PA15|LINE|L1 -111431 NM_001364105 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 468.5-6 chr18 73562016 73562503 + 1.5 NA Intergenic L1MEg|LINE|L1 237318 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 239 chr1 45585607 45585871 + 1.5 NA intron (NM_002482, intron 1 of 14) AluJo|SINE|Alu 1698 NM_002482 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 332-40 chr7 68354570 68354849 + 1.5 NA Intergenic Tigger3c|DNA|TcMar-Tigger 334456 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 135-2 chr2 176589057 176589188 + 1.5 NA Intergenic Intergenic 11930 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 301-31 chr6 41425890 41426108 + 1.5 NA Intergenic L2a|LINE|L2 -76445 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 167.5 chr1 31351464 31351689 + 1.5 NA intron (NM_001282571, intron 6 of 6) AluJr|SINE|Alu 21500 NM_004102 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 447.5-19 chr5 55609195 55609757 + 1.5 NA Intergenic MIRc|SINE|MIR -74398 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 122-4 chr6 142920991 142921089 + 1.5 NA intron (NM_006734, intron 1 of 9) (ATTC)n|Simple_repeat|Simple_repeat 24136 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 230-32 chr6 46537356 46537555 + 1.5 NA Intergenic L1MA7|LINE|L1 -45388 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 115.5-23 chr9 33093308 33093424 + 1.5 NA Intergenic L1MC5|LINE|L1 -15326 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 253-31 chr6 17379403 17379625 + 1.5 NA Intergenic Intergenic -13991 NM_001363534 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 172-4 chr12 80710198 80710341 + 1.5 NA TTS (NM_002469) TTS (NM_002469) 2635 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 244.5-12 chr14 44765002 44765195 + 1.5 NA intron (NR_146457, intron 4 of 4) intron (NR_146457, intron 4 of 4) 34028 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 352-10 chr17 58607406 58607712 + 1.5 NA intron (NM_031272, intron 10 of 31) MIR3|SINE|MIR -63231 NM_001368771 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 251-32 chr7 19893425 19893675 + 1.5 NA Intergenic L1M3a|LINE|L1 -119933 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 234-11 chr16 65108359 65108662 + 1.5 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 13553 NM_001797 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 347.5-15 chr2 78175068 78175361 + 1.5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 86484 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 199.5-26 chr3 4397846 4398006 + 1.5 NA intron (NM_001164674, intron 6 of 7) MIR|SINE|MIR 69343 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 160-16 chr8 81081214 81081320 + 1.5 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 30801 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 511.5-2 chr1 118772248 118772809 + 1.5 NA Intergenic L1PB|LINE|L1 215815 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 289-16 chr15 60550267 60550497 + 1.5 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 42144 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 122.5-3 chr11 120358672 120358791 + 1.5 NA intron (NM_015313, intron 1 of 40) MER3|DNA|hAT-Charlie 22318 NM_001198665 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 175.5-6 chr14 91414579 91414782 + 1.5 NA intron (NM_001080414, intron 2 of 29) intron (NM_001080414, intron 2 of 29) 3140 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 418.5-25 chr6 130592448 130593046 + 1.5 NA Intergenic L2b|LINE|L2 155630 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 314.5-16 chr2 27121457 27121760 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie -2207 NM_032604 84696 Hs.375791 NM_032604 ENSG00000143994 ABHD1 LABH1 abhydrolase domain containing 1 protein-coding 283-25 chr2 215765283 215765613 + 1.5 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 47405 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 328.5-5 chr10 94324551 94325002 + 1.5 NA intron (NM_001165979, intron 30 of 31) intron (NM_001165979, intron 30 of 31) -37706 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 238-34 chr7 29307458 29307767 + 1.5 NA intron (NM_001293070, intron 2 of 13) MLT1D|LTR|ERVL-MaLR -98642 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 382.5-12 chr19 29079556 29079937 + 1.5 NA Intergenic Intergenic 77191 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 393-21 chr20 48317458 48317769 + 1.5 NA Intergenic L1MDa|LINE|L1 -42298 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 454.5-23 chr6 122649260 122649721 + 1.5 NA intron (NM_032471, intron 2 of 3) ERVL-B4-int|LTR|ERVL -3239 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 144-11 chrX 47600028 47600176 + 1.5 NA intron (NM_006950, intron 5 of 12) L1M4|LINE|L1 12673 NR_039926 100616147 NR_039926 ENSG00000263858 MIR4769 - microRNA 4769 ncRNA 261-4 chr10 105679704 105679964 + 1.5 NA intron (NR_120625, intron 3 of 3) L1M1|LINE|L1 140499 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 212.5-15 chr19 52164320 52164535 + 1.5 NA intron (NM_001102657, intron 3 of 4) GA-rich|Low_complexity|Low_complexity 7194 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 663-7 chr2 99129349 99129909 + 1.5 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 11551 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 153-2 chr1 172716874 172716996 + 1.5 NA Intergenic Intergenic 57832 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 221.5-14 chr2 77626797 77627091 + 1.5 NA Intergenic Intergenic -104511 NM_001134745 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 237-26 chr7 88048164 88048508 + 1.5 NA intron (NM_001324421, intron 3 of 28) L1ME4a|LINE|L1 114085 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 506-5 chr10 106946969 106947470 + 1.5 NA intron (NM_001206569, intron 2 of 25) L1ME3G|LINE|L1 217487 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 315.5-11 chr15 101398169 101398383 + 1.5 NA intron (NM_138325, intron 7 of 13) intron (NM_138325, intron 7 of 13) 63839 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 139.5-5 chr12 126477552 126477702 + 1.5 NA Intergenic L1MEg|LINE|L1 -28300 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 468-43 chr7 48610079 48610595 + 1.5 NA intron (NM_152701, intron 58 of 61) MSTA-int|LTR|ERVL-MaLR -314210 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 354.5-14 chr2 50302047 50302595 + 1.5 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 45433 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 235-21 chr2 146733487 146733721 + 1.5 NA Intergenic Intergenic 146547 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 535-14 chr21 29341751 29342286 + 1.5 NA intron (NR_027655, intron 4 of 7) MER46C|DNA|TcMar-Tigger -30483 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 184.5-21 chr5 119044345 119044572 + 1.5 NA intron (NR_134250, intron 1 of 2) MIR|SINE|MIR -6797 NR_134249 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 344.5-12 chr19 28129135 28129625 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -335440 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 263-8 chr14 31423997 31424172 + 1.5 NA intron (NR_110045, intron 2 of 3) intron (NR_110045, intron 2 of 3) 3326 NR_110045 101927124 Hs.647561 NR_110045 ENSG00000250365 LOC101927124 - uncharacterized LOC101927124 ncRNA 215-20 chr22 44011326 44011573 + 1.5 NA intron (NM_001003828, intron 2 of 13) AluSz|SINE|Alu 12238 NM_001003828 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 305.5-13 chr2 5606587 5606909 + 1.5 NA Intergenic MIR3|SINE|MIR 84370 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 214.5-15 chr21 15094421 15094727 + 1.5 NA Intergenic MER103C|DNA|hAT-Charlie -29574 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 239-11 chr14 45600216 45600469 + 1.5 NA Intergenic Intergenic 115260 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 231-4 chr11 128383793 128384046 + 1.5 NA Intergenic Intergenic 138391 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 293-7 chr13 86950389 86950822 + 1.5 NA Intergenic AluYa5|SINE|Alu 38685 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 174.5-25 chr3 182830008 182830147 + 1.5 NA intron (NM_014616, intron 4 of 29) intron (NM_014616, intron 4 of 29) 36573 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 329-13 chr17 29417375 29417923 + 1.5 NA intron (NM_025142, intron 1 of 17) intron (NM_025142, intron 1 of 17) 26724 NM_025142 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 275-22 chr2 71830744 71830963 + 1.5 NA Intergenic Intergenic 317009 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 253.5-10 chr15 68077390 68077782 + 1.5 NA intron (NM_001320687, intron 2 of 14) L3|LINE|CR1 23010 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 316.5-24 chr7 7188489 7188825 + 1.5 NA intron (NM_020156, intron 1 of 3) L1ME3G|LINE|L1 6042 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 310-29 chr22 30417105 30417398 + 1.5 NA TTS (NM_033382) TTS (NM_033382) -8517 NM_016498 51537 Hs.713636 NM_016498 ENSG00000242114 MTFP1 HSPC242|MTP18 mitochondrial fission process 1 protein-coding 564.5-5 chr16 76710578 76711187 + 1.5 NA Intergenic MIR|SINE|MIR 75884 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 313-40 chr9 76763354 76763632 + 1.5 NA promoter-TSS (NR_015342) promoter-TSS (NR_015342) -943 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 210-6 chr14 74496621 74496827 + 1.5 NA 3' UTR (NM_194279, exon 4 of 4) 3' UTR (NM_194279, exon 4 of 4) 2959 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 233-18 chr20 37634390 37634672 + 1.5 NA Intergenic Intergenic -11412 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 287.5-7 chr12 102584607 102584839 + 1.5 NA Intergenic Intergenic -104160 NM_000618 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 314.5-7 chr11 78165214 78165524 + 1.5 NA intron (NR_102281, intron 2 of 2) AluSx|SINE|Alu 23257 NM_001029859 283219 Hs.528439 NM_001029859 ENSG00000188997 KCTD21 KCASH2 potassium channel tetramerization domain containing 21 protein-coding 420.5-18 chr3 193268057 193268693 + 1.5 NA intron (NM_020386, intron 3 of 3) intron (NM_020386, intron 3 of 3) 26596 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 510.5-4 chr13 66104083 66104541 + 1.5 NA Intergenic Intergenic -113938 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 160-2 chr1 56777404 56777518 + 1.5 NA intron (NM_001004303, intron 4 of 19) L2c|LINE|L2 41943 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 401-24 chr3 22273458 22273917 + 1.5 NA Intergenic LTR37A|LTR|ERV1 316548 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 150.5-20 chr7 31181022 31181122 + 1.5 NA Intergenic L1PA15|LINE|L1 128611 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 153.5-10 chr4 138492664 138492858 + 1.5 NA Intergenic Intergenic 183050 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 264-6 chr14 52359797 52360138 + 1.5 NA Intergenic L1MC5a|LINE|L1 45655 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 272-36 chr6 99966061 99966300 + 1.5 NA intron (NM_032503, intron 1 of 5) intron (NM_032503, intron 1 of 5) -27858 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 372.5-4 chr13 26498382 26498814 + 1.5 NA Intergenic Intergenic -59085 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 308.5-31 chr8 120289059 120289360 + 1.5 NA intron (NM_021110, intron 33 of 47) MER113A|DNA|hAT-Charlie 155941 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 297.5-19 chr2 100119578 100119861 + 1.5 NA intron (NM_002285, intron 1 of 23) MIR|SINE|MIR -14136 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 493.5-15 chr5 117728996 117729635 + 1.5 NA Intergenic Intergenic -1046 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 301.5-18 chr6 45844213 45844613 + 1.5 NA Intergenic Intergenic 93184 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 139.5-19 chr6 151257114 151257216 + 1.5 NA intron (NM_005100, intron 2 of 4) L1PA16|LINE|L1 17198 NM_005100 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 360-8 chr10 50315793 50316086 + 1.5 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -67329 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 212-5 chr11 126075566 126075844 + 1.5 NA Intergenic Intergenic -12413 NM_001243597 50937 Hs.38034 NM_016952 ENSG00000064309 CDON CDO|CDON1|HPE11|ORCAM cell adhesion associated, oncogene regulated protein-coding 250.5-9 chr12 14124269 14124504 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -144030 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 345-3 chr1 113762792 113763137 + 1.5 NA non-coding (NR_130896, exon 8 of 8) non-coding (NR_130896, exon 8 of 8) -3076 NM_001323042 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 251.5-12 chr15 67763019 67763243 + 1.5 NA intron (NM_001206804, intron 19 of 21) intron (NM_001206804, intron 19 of 21) -62378 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 299.5-26 chr4 30309445 30309755 + 1.5 NA Intergenic Intergenic -410769 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 336-19 chr14 73933469 73933959 + 1.5 NA 3' UTR (NM_152445, exon 9 of 9) 3' UTR (NM_152445, exon 9 of 9) -16220 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 303-20 chr22 25140789 25141143 + 1.5 NA intron (NM_001145206, intron 4 of 10) MIR3|SINE|MIR -28274 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 265-35 chr7 139488626 139488858 + 1.5 NA Intergenic L1ME4b|LINE|L1 -5069 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 445-4 chr13 91139584 91140102 + 1.5 NA intron (NR_047004, intron 2 of 3) L2b|LINE|L2 -50226 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 495.5-2 chr1 237165609 237166105 + 1.5 NA intron (NM_001035, intron 1 of 104) AluJo|SINE|Alu 123673 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 120-2 chr16 80471745 80471846 + 1.5 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -68939 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 208.5-27 chr6 33666641 33666876 + 1.5 NA intron (NM_002224, intron 14 of 57) intron (NM_002224, intron 14 of 57) -31370 NR_037498 100500873 NR_037498 ENSG00000266509 MIR3934 - microRNA 3934 ncRNA 286.5-20 chr2 134857317 134857522 + 1.5 NA promoter-TSS (NR_049856) promoter-TSS (NR_049856) -401 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 146.5-32 chr7 35423437 35423583 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 109655 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 383.5-18 chr4 71244611 71244866 + 1.5 NA intron (NM_001098484, intron 2 of 25) intron (NM_001098484, intron 2 of 25) 57452 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 173.5-21 chr7 23053334 23053548 + 1.5 NA Intergenic L1ME1|LINE|L1 -39311 NM_001363467 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 225.5-27 chr22 37956859 37957038 + 1.5 NA intron (NR_125371, intron 2 of 4) intron (NR_125371, intron 2 of 4) 3249 NM_001301131 5435 Hs.436578 NM_021974 ENSG00000100142 POLR2F HRBP14.4|POLRF|RPABC14.4|RPABC2|RPB14.4|RPB6|RPC15 RNA polymerase II subunit F protein-coding 162-10 chr3 32424337 32424548 + 1.5 NA intron (NM_138410, intron 1 of 4) MLT1G3|LTR|ERVL-MaLR 32589 NM_138410 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 369-38 chr7 92100832 92101314 + 1.5 NA intron (NM_147185, intron 45 of 49) intron (NM_147185, intron 45 of 49) 33404 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 121.5-12 chr20 51318064 51318192 + 1.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 134849 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 503-2 chr10 121982337 121982672 + 1.5 NA Intergenic Intergenic -6659 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 189-12 chr2 17496630 17496871 + 1.5 NA Intergenic L2a|LINE|L2 21690 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 219-29 chr5 76158479 76158700 + 1.5 NA intron (NM_014979, intron 2 of 12) L1MB8|LINE|L1 75206 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 271-19 chr3 117390469 117390895 + 1.5 NA Intergenic Intergenic 300243 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 261.5-35 chr8 92801332 92801544 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -15378 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 295-13 chr14 61296439 61296855 + 1.5 NA Intergenic Intergenic -15309 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 209-24 chr5 115533572 115533872 + 1.5 NA intron (NM_020177, intron 2 of 2) intron (NM_020177, intron 2 of 2) 11053 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 540.5-4 chr18 12766782 12767332 + 1.5 NA Intergenic MLT2F|LTR|ERVL -17635 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 437.5-5 chr13 78150719 78151111 + 1.5 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 96060 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 479-8 chr17 77163603 77164072 + 1.5 NA intron (NM_001143999, intron 3 of 16) MER65C|LTR|ERV1 -21376 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 555-21 chr5 60139248 60139697 + 1.5 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 233191 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 283-41 chr7 38453059 38453359 + 1.5 NA intron (NM_001635, intron 11 of 20) intron (NM_001635, intron 11 of 20) 111632 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 227.5-5 chr12 20889639 20889859 + 1.5 NA intron (NM_019844, intron 13 of 15) L1PB4|LINE|L1 67201 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 342-11 chr18 7101219 7101488 + 1.5 NA intron (NM_005559, intron 1 of 62) LTR82A|LTR|ERVL 16444 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 363.5-20 chr3 39208840 39209258 + 1.5 NA Intergenic AluSx1|SINE|Alu -16454 NM_194293 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 229.5 chr1 6064617 6064882 + 1.5 NA intron (NM_001199862, intron 2 of 15) intron (NM_001199862, intron 2 of 15) 18861 NM_001199862 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 203.5-22 chr4 65687224 65687389 + 1.5 NA intron (NR_034138, intron 3 of 3) intron (NR_034138, intron 3 of 3) -16811 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 273.5-27 chr6 159442917 159443141 + 1.5 NA Intergenic Intergenic 59498 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 231 chr1 10317070 10317246 + 1.5 NA intron (NM_001365951, intron 22 of 48) intron (NM_001365951, intron 22 of 48) 18192 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 489.5-17 chr6 25578113 25578538 + 1.5 NA intron (NM_001173977, intron 29 of 36) intron (NM_001173977, intron 29 of 36) -73890 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 260-4 chr11 13266729 13267118 + 1.5 NA Intergenic Intergenic -9729 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 199.5-13 chr17 71262896 71263090 + 1.5 NA Intergenic Intergenic -60814 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 308-19 chr2 166395396 166395854 + 1.5 NA Intergenic Intergenic -19638 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 340.5-21 chr3 95177433 95177873 + 1.5 NA Intergenic Intergenic 239390 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 217-26 chr8 47294645 47294895 + 1.5 NA intron (NR_104581, intron 5 of 16) AluJo|SINE|Alu 33832 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 192-19 chr3 146066053 146066268 + 1.5 NA TTS (NR_146297) TTS (NR_146297) 3025 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 174 chr1 51704733 51704897 + 1.5 NA intron (NM_148906, intron 2 of 22) MLT1A0|LTR|ERVL-MaLR -25035 NM_148907 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 145.5-18 chr2 177496725 177496822 + 1.5 NA intron (NM_003659, intron 12 of 19) intron (NM_003659, intron 12 of 19) 56023 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 416.5-12 chr15 52494136 52494491 + 1.5 NA intron (NM_001142495, intron 1 of 39) intron (NM_001142495, intron 1 of 39) 34567 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 403.5-17 chr4 47894698 47895328 + 1.5 NA intron (NR_103795, intron 10 of 23) Tigger1|DNA|TcMar-Tigger -19214 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 281-31 chr5 79861214 79861518 + 1.5 NA Intergenic L1MEf|LINE|L1 -75213 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 253-9 chr17 40505509 40505803 + 1.5 NA Intergenic AluJr|SINE|Alu -4033 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 193.5-21 chr3 38820624 38820780 + 1.5 NA Intergenic Intergenic -26692 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 315-30 chr4 135589291 135589624 + 1.5 NA Intergenic L2a|LINE|L2 298636 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 447.5-24 chr8 51602049 51602624 + 1.5 NA intron (NM_144651, intron 2 of 22) L1PA16|LINE|L1 207109 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 194-18 chr4 155212133 155212369 + 1.5 NA intron (NM_000910, intron 1 of 1) intron (NM_000910, intron 1 of 1) 3615 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 366.5-31 chr8 72023244 72023535 + 1.5 NA intron (NM_007332, intron 26 of 26) MIR|SINE|MIR 52195 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 269.5-2 chr1 65896438 65896702 + 1.5 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) -16675 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 171-19 chr8 53656188 53656339 + 1.5 NA Intergenic L1ME3E|LINE|L1 -132298 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 374-21 chr20 35455688 35456004 + 1.5 NA intron (NM_007186, intron 1 of 34) intron (NM_007186, intron 1 of 34) 248 NM_007186 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 276-2 chr1 50394429 50394749 + 1.5 NA Intergenic L1ME1|LINE|L1 28854 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 395.5-25 chr3 134946938 134947363 + 1.5 NA intron (NM_004441, intron 2 of 15) L2a|LINE|L2 151890 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 183.5-30 chr8 132431909 132432140 + 1.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 15238 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 385.5-31 chr22 34978548 34978847 + 1.5 NA intron (NR_138042, intron 1 of 4) L2b|LINE|L2 19219 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 251-8 chr15 34706412 34706750 + 1.5 NA Intergenic Intergenic 48417 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 449-5 chr10 100823686 100824234 + 1.5 NA intron (NM_003988, intron 7 of 10) intron (NM_003988, intron 7 of 10) 78249 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 464.5-17 chr3 140433081 140433458 + 1.5 NA intron (NM_022131, intron 5 of 16) intron (NM_022131, intron 5 of 16) 75520 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 245.5-5 chr10 112988635 112988848 + 1.5 NA intron (NM_001367943, intron 4 of 14) intron (NM_001367943, intron 4 of 14) 38491 NM_001146285 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 301.5-2 chr12 43428885 43429300 + 1.5 NA intron (NM_025003, intron 24 of 38) intron (NM_025003, intron 24 of 38) 123111 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 252-10 chr14 82017229 82017540 + 1.5 NA Intergenic AluSg|SINE|Alu -274246 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 425.5-18 chr5 82251011 82251680 + 1.5 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 27009 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 353.5-20 chr4 30576172 30576542 + 1.5 NA Intergenic Intergenic -144012 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 332-4 chr12 63056438 63056909 + 1.5 NA Intergenic L1M5|LINE|L1 96137 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 188.5-11 chr2 6087551 6087749 + 1.5 NA Intergenic Intergenic 105672 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 258-9 chr2 42429836 42430037 + 1.5 NA Intergenic Intergenic -60979 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 297.5-9 chr14 23174116 23174499 + 1.5 NA intron (NM_012244, intron 1 of 10) intron (NM_012244, intron 1 of 10) 9353 NM_012244 23428 Hs.596643 NM_012244 ENSG00000092068 SLC7A8 LAT2|LPI-PC1 solute carrier family 7 member 8 protein-coding 342.5-13 chr17 6176886 6177357 + 1.5 NA Intergenic Intergenic 106507 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 351-45 chr9 131784973 131785208 + 1.5 NA Intergenic Intergenic -45146 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 221-8 chr15 59701495 59701694 + 1.5 NA Intergenic Intergenic -12274 NM_001368061 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 342.5-22 chr21 27657203 27657487 + 1.5 NA Intergenic Intergenic -65034 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 299.5-29 chr5 103147087 103147301 + 1.5 NA intron (NM_001345878, intron 6 of 28) L1ME4b|LINE|L1 26893 NM_001276277 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 275.5-28 chr5 128398992 128399320 + 1.5 NA intron (NM_001999, intron 8 of 64) L1MEd|LINE|L1 139089 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 149.5-11 chr3 88538478 88538649 + 1.5 NA Intergenic Intergenic 200107 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 372-20 chr18 71974804 71975152 + 1.5 NA Intergenic Intergenic -192752 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 192.5-19 chr20 58195084 58195300 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 33461 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 332 chr1 191818827 191819299 + 1.5 NA Intergenic MER76|LTR|ERVL -339399 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 303.5-3 chr1 101893054 101893428 + 1.5 NA non-coding (NR_033424, exon 2 of 2) non-coding (NR_033424, exon 2 of 2) 21229 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 168-2 chr1 229773752 229773925 + 1.5 NA Intergenic L1PB4|LINE|L1 111980 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 206.5-19 chr16 69518362 69518585 + 1.5 NA Intergenic AluSq2|SINE|Alu 47395 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 256-6 chr13 86138394 86138674 + 1.5 NA Intergenic Intergenic -339115 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 158.5-13 chr2 188260113 188260300 + 1.5 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 27485 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 176-12 chr4 100295540 100295708 + 1.5 NA Intergenic Intergenic 99623 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 401-4 chr1 104622016 104622340 + 1.5 NA Intergenic MER4A1|LTR|ERV1 549155 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 171-12 chr4 76844722 76844852 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 53357 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 378-13 chr18 3015081 3015413 + 1.5 NA Intergenic Intergenic -3300 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 283-20 chr2 81858867 81859242 + 1.5 NA Intergenic MER57C2|LTR|ERV1 -392108 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 267-25 chr22 31236683 31236952 + 1.5 NA intron (NM_005569, intron 2 of 15) AluSz|SINE|Alu -11567 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 198-17 chr4 33293772 33294048 + 1.5 NA Intergenic L1MC4|LINE|L1 745983 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 238.5-15 chr14 69053174 69053371 + 1.5 NA 3' UTR (NM_001284206, exon 9 of 9) 3' UTR (NM_001284206, exon 9 of 9) 73590 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 357-27 chr3 129456419 129456690 + 1.5 NA intron (NM_001280545, intron 4 of 30) AluSg|SINE|Alu 16330 NM_052989 55764 Hs.655284 NM_018262 ENSG00000163913 IFT122 CED|CED1|SPG|WDR10|WDR10p|WDR140 intraflagellar transport 122 protein-coding 233.5-32 chr7 113988982 113989225 + 1.5 NA Intergenic L1M3a|LINE|L1 -70094 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 192.5-18 chr20 56814776 56814972 + 1.5 NA Intergenic L1MB3|LINE|L1 185568 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 154.5-12 chr20 50974851 50974990 + 1.5 NA Intergenic L1MC5|LINE|L1 16102 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 119.5 chr1 40921168 40921302 + 1.5 NA Intergenic Intergenic -58461 NM_001905 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 246.5 chr1 47790574 47790833 + 1.5 NA intron (NM_001194986, intron 4 of 6) MIRb|SINE|MIR 206682 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 539.5-5 chr11 24223222 24223848 + 1.5 NA Intergenic L1PA10|LINE|L1 -273518 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 357.5-11 chr19 32961680 32962142 + 1.5 NA intron (NM_032816, intron 2 of 18) AluJb|SINE|Alu 10047 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 221-14 chr3 5606775 5606983 + 1.5 NA Intergenic Intergenic -356624 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 154.5-4 chr10 111617861 111618083 + 1.5 NA Intergenic Intergenic 503681 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 327-36 chr5 30070109 30070492 + 1.5 NA Intergenic L1PA13|LINE|L1 189740 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 352-41 chrX 132460621 132460940 + 1.5 NA intron (NM_001170704, intron 1 of 8) L1PB2|LINE|L1 -21090 NM_133486 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 296 chr1 40857269 40857518 + 1.5 NA Intergenic LTR16A|LTR|ERVL 4970 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 248.5-16 chr20 43881865 43882204 + 1.5 NA Intergenic L1MEh|LINE|L1 -12684 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 510-14 chr3 63757396 63757919 + 1.5 NA Intergenic Intergenic -61642 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 318-6 chr11 29161030 29161322 + 1.5 NA Intergenic Intergenic -433237 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 296-11 chr14 57415956 57416305 + 1.5 NA TTS (NM_001011713) TTS (NM_001011713) 25544 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 240-32 chr4 71101409 71101687 + 1.5 NA Intergenic L1PA3|LINE|L1 -85711 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 249.5-36 chr8 88059801 88059967 + 1.5 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -185869 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 452-27 chr6 166473127 166473497 + 1.5 NA intron (NM_001006932, intron 11 of 21) AluJb|SINE|Alu -7929 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 317.5-18 chr2 164571902 164572186 + 1.5 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) -3549 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 125-4 chr8 24357126 24357209 + 1.5 NA non-coding (NR_130710, exon 23 of 23) non-coding (NR_130710, exon 23 of 23) -27118 NM_014479 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 378.5-12 chr18 5706786 5707152 + 1.5 NA Intergenic Intergenic -41850 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 215.5-4 chr1 225613652 225613926 + 1.5 NA intron (NM_001008493, intron 1 of 14) MER21C|LTR|ERVL 39334 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 402.5-13 chr2 23722502 23722882 + 1.5 NA Intergenic L1MA5A|LINE|L1 204431 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 348-31 chr7 49573146 49573499 + 1.5 NA Intergenic L1ME3A|LINE|L1 -200316 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 139 chr10 82090204 82090319 + 1.5 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 142659 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 490.5-11 chr20 20965813 20966405 + 1.5 NA Intergenic Intergenic 140249 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 281-38 chr7 65279577 65279804 + 1.5 NA Intergenic L1MB2|LINE|L1 -94109 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 464.5-18 chr4 62392308 62392940 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -230859 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 414-6 chr10 62394736 62395024 + 1.5 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -19753 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 295.5-12 chr2 20145566 20145810 + 1.5 NA Intergenic Intergenic 79442 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 276.5-30 chr4_GL000008v2_random 408 716 + 1.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 177609 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 285.5-14 chr3 95529347 95529603 + 1.5 NA Intergenic AluSg4|SINE|Alu 153718 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 528.5-8 chr2 122625536 122626141 + 1.5 NA Intergenic Intergenic 447643 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 206.5-38 chr8 56399067 56399377 + 1.5 NA Intergenic L1MC5a|LINE|L1 -8512 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 273-25 chr3 87826946 87827159 + 1.5 NA intron (NM_001322210, intron 2 of 2) AluJb|SINE|Alu 34346 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 265.5-2 chr1 98618439 98618829 + 1.5 NA Intergenic Intergenic -43087 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 314-41 chr8 140467763 140468046 + 1.5 NA Intergenic AluSx1|SINE|Alu -9325 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 331.5-14 chr2 110911312 110911587 + 1.5 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 178876 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 304.5-20 chr15 83758674 83758957 + 1.5 NA intron (NM_207517, intron 3 of 29) L1MB3|LINE|L1 104692 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 294.5-18 chr2 41932253 41932689 + 1.5 NA non-coding (NR_110262, exon 2 of 4) non-coding (NR_110262, exon 2 of 4) 1252 NR_110262 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 149.5-8 chr2 59888662 59888766 + 1.5 NA Intergenic Intergenic 494322 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 154.5-23 chr6 165492364 165492500 + 1.5 NA intron (NM_006661, intron 3 of 22) L1PBa|LINE|L1 169668 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 172.5-17 chr6 118722871 118723037 + 1.5 NA Intergenic Intergenic -12879 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 167-9 chr3 102899943 102900169 + 1.5 NA Intergenic Intergenic 465041 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 211-6 chr14 31824708 31824890 + 1.5 NA intron (NM_001201573, intron 5 of 8) Charlie29a|DNA|hAT-Charlie 110230 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 319.5-25 chr4 95483955 95484296 + 1.5 NA intron (NM_003728, intron 1 of 15) L2a|LINE|L2 64848 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 305-35 chr4 35469793 35470131 + 1.5 NA Intergenic L2|LINE|L2 773977 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 371-22 chr4 59239004 59239360 + 1.5 NA Intergenic L1PB4|LINE|L1 225609 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 221-29 chr8 136266497 136266781 + 1.5 NA Intergenic Intergenic -264159 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 393-13 chr18 72551953 72552368 + 1.5 NA Intergenic AluSp|SINE|Alu -7818 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 184-4 chr16 48650099 48650309 + 1.5 NA Intergenic L1MA5A|LINE|L1 -40024 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 244-17 chr2 195908645 195908936 + 1.5 NA intron (NM_018897, intron 25 of 64) intron (NM_018897, intron 25 of 64) 160047 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 347.5-8 chr14 73958559 73958883 + 1.5 NA 3' UTR (NM_001330189, exon 17 of 17) 3' UTR (NM_001330189, exon 17 of 17) 8419 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 638 chr1 116112762 116113373 + 1.5 NA intron (NM_152367, intron 2 of 6) MIRb|SINE|MIR 1312 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 368.5-13 chr14 51858906 51859433 + 1.5 NA Intergenic Intergenic -1443 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 353.5-19 chr22 36026758 36027019 + 1.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 1649 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 226.5-3 chr11 62421787 62421975 + 1.5 NA intron (NM_003357, intron 1 of 2) intron (NM_003357, intron 1 of 2) 2848 NM_003357 7356 Hs.523732 NM_003357 ENSG00000149021 SCGB1A1 CC10|CC16|CCPBP|CCSP|UGB|UP-1|UP1 secretoglobin family 1A member 1 protein-coding 138.5-2 chr10 86986229 86986361 + 1.5 NA intron (NM_133447, intron 3 of 11) L1MEd|LINE|L1 15959 NM_133447 119385 Hs.511787 NM_133447 AGAP11 - ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 protein-coding 534.5-3 chr13 29402002 29402486 + 1.5 NA intron (NM_001033602, intron 6 of 13) intron (NM_001033602, intron 6 of 13) -26416 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 123.5-4 chr11 79668343 79668492 + 1.5 NA Intergenic MIRb|SINE|MIR -227387 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 374.5-8 chr12 113176343 113176593 + 1.5 NA intron (NM_001111322, intron 7 of 19) AluSx|SINE|Alu 9010 NM_024072 79039 Hs.506861 NM_024072 ENSG00000123064 DDX54 DP97 DEAD-box helicase 54 protein-coding 230.5-45 chr6 140503809 140504197 + 1.5 NA Intergenic Intergenic -179811 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 580-19 chr8 49481593 49482249 + 1.5 NA Intergenic Intergenic 30259 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 259-27 chr8 78131468 78131765 + 1.5 NA Intergenic Intergenic -384724 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 418-29 chr8 95585501 95585830 + 1.5 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -316464 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 165-2 chr16 63409198 63409367 + 1.5 NA Intergenic Intergenic -1372844 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 404-18 chr15 70572600 70572989 + 1.5 NA non-coding (NR_135691, exon 2 of 2) non-coding (NR_135691, exon 2 of 2) 13812 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 289-11 chr12 64749441 64749744 + 1.5 NA intron (NM_002076, intron 2 of 13) L1M3|LINE|L1 9814 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 378-8 chr14 32768392 32768712 + 1.5 NA intron (NM_004274, intron 11 of 13) intron (NM_004274, intron 11 of 13) -170327 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 246-8 chr17 77625265 77625618 + 1.5 NA Intergenic L1MD1|LINE|L1 78500 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 212.5-32 chrX 75674363 75674594 + 1.5 NA Intergenic L1P4a|LINE|L1 68601 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 153-3 chr10 73119199 73119408 + 1.5 NA intron (NM_001283015, intron 2 of 7) AluSx4|SINE|Alu 6904 NR_145776 109617000 NR_145776 ENSG00000221164 SNORA11F - small nucleolar RNA, H/ACA box 11F snoRNA 318-11 chr13 36245994 36246339 + 1.5 NA intron (NM_001144981, intron 7 of 7) Tigger1|DNA|TcMar-Tigger -31551 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 341.5-29 chr6 63129042 63129273 + 1.5 NA Intergenic L1PBa|LINE|L1 190820 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 116.5-15 chr5 65690988 65691073 + 1.5 NA intron (NM_019072, intron 5 of 10) L1MC5a|LINE|L1 31079 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 286.5-32 chr7 39515814 39516188 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -50403 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 217 chr10 110105741 110106052 + 1.5 NA intron (NM_001320591, intron 3 of 15) intron (NM_001320591, intron 3 of 15) -97515 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 225.5-37 chr9 73916678 73916873 + 1.5 NA Intergenic HAL1ME|LINE|L1 -454756 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 133.5-18 chr4 10992715 10992818 + 1.5 NA Intergenic Intergenic -307998 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 608-5 chr14 87925252 87925714 + 1.5 NA Intergenic AluJo|SINE|Alu 67699 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 217.5-4 chr10 70054200 70054443 + 1.5 NA intron (NM_018649, intron 1 of 8) intron (NM_018649, intron 1 of 8) 1475 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 450-3 chr10 24371348 24371716 + 1.5 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -77882 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 372.5-10 chr2 46553023 46553527 + 1.5 NA intron (NM_012249, intron 2 of 4) intron (NM_012249, intron 2 of 4) -10698 NM_001371281 189.5-5 chr11 85475565 85475768 + 1.5 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 151604 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 356-5 chr11 34302056 34302393 + 1.5 NA intron (NM_145804, intron 1 of 16) L1ME4a|LINE|L1 55786 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 246.5-36 chr6 127405675 127406001 + 1.5 NA Intergenic Intergenic 53551 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 230-37 chr9 100667895 100668136 + 1.5 NA Intergenic MER52A|LTR|ERV1 89936 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 226-21 chr8 79688412 79688596 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 77387 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 242-13 chr17 81638532 81638839 + 1.5 NA intron (NM_001290212, intron 1 of 3) LTR8|LTR|ERV1 1514 NM_001290212 83882 Hs.208219 NM_031945 ENSG00000182612 TSPAN10 OCSP tetraspanin 10 protein-coding 189-13 chr2 23721712 23721943 + 1.5 NA Intergenic L1MA5A|LINE|L1 205296 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 335-25 chr2 50177395 50177742 + 1.5 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 170186 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 290.5-17 chr20 47521258 47521692 + 1.5 NA intron (NM_181659, intron 1 of 22) LTR10F|LTR|ERV1 19588 NM_001174087 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 189.5-29 chr8 136256546 136256790 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -274130 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 201.5-24 chr5 98141872 98142024 + 1.5 NA intron (NR_146477, intron 3 of 4) L2a|LINE|L2 19291 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 219-18 chr17 48256148 48256386 + 1.5 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -38080 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 306.5-15 chr16 76527132 76527468 + 1.5 NA intron (NM_001322179, intron 17 of 22) MamRep605|LTR?|LTR? -107698 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 298.5-13 chr2 29146870 29147170 + 1.5 NA intron (NM_001287528, intron 8 of 14) intron (NM_001287528, intron 8 of 14) 31605 NM_024692 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 253-33 chr7 40462231 40462480 + 1.5 NA intron (NM_024728, intron 11 of 14) L2a|LINE|L2 327379 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 237-20 chr4 113017877 113018055 + 1.5 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -31448 NM_001354235 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 329-4 chr11 64587691 64588079 + 1.5 NA Intergenic L2b|LINE|L2 -2925 NM_001276327 116085 Hs.174424 NM_144585 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 member 12 protein-coding 222-11 chr19 30697373 30697595 + 1.5 NA intron (NM_001352260, intron 5 of 5) MIR|SINE|MIR 325100 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 301.5-23 chr8 138379470 138379770 + 1.5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 117641 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 152-5 chr16 89578877 89579061 + 1.5 NA exon (NM_014427, exon 3 of 17) exon (NM_014427, exon 3 of 17) 3211 NM_014427 27132 Hs.461775 NM_014427 ENSG00000178773 CPNE7 - copine 7 protein-coding 126.5-4 chr16 34586757 34586862 + 1.5 NA Intergenic Intergenic -205329 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 265 chr1 14255778 14255995 + 1.5 NA Intergenic MIRb|SINE|MIR 164087 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 322-9 chr14 56598969 56599329 + 1.5 NA intron (NM_017799, intron 3 of 15) intron (NM_017799, intron 3 of 15) 19351 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 295-29 chr22 19590082 19590422 + 1.5 NA Intergenic L1MB4|LINE|L1 -23413 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 202-13 chr3 7590371 7590545 + 1.5 NA intron (NM_000844, intron 8 of 9) MER58A|DNA|hAT-Charlie -55174 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 265.5-31 chr5 81067422 81067788 + 1.5 NA intron (NM_006909, intron 2 of 26) intron (NM_006909, intron 2 of 26) -106698 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 375-8 chr12 123514481 123514779 + 1.5 NA intron (NM_178314, intron 2 of 6) AluSz|SINE|Alu 5596 NM_001319244 353116 Hs.530315 NM_178314 ENSG00000188026 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein like 1 protein-coding 166-5 chr2 4327846 4328008 + 1.5 NA Intergenic Intergenic 328295 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 480-31 chr7 42195187 42195706 + 1.5 NA intron (NM_000168, intron 2 of 14) L2c|LINE|L2 41763 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 246-12 chr7 1919605 1919941 + 1.5 NA intron (NM_001013837, intron 17 of 18) MIR3|SINE|MIR 20798 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 283-30 chr22 36008272 36008634 + 1.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 20084 NM_001082579 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 452 chr1 113917972 113918422 + 1.5 NA Intergenic L2|LINE|L2 11061 NR_110725 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA 478.5-20 chr5 114960331 114960865 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -187185 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 265-21 chr2 68387887 68388189 + 1.5 NA intron (NM_002664, intron 5 of 8) intron (NM_002664, intron 5 of 8) 22756 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 195.5-21 chr4 32761285 32761538 + 1.5 NA Intergenic Intergenic 410373 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 201.5-25 chr5 148766161 148766329 + 1.5 NA Intergenic AluSz|SINE|Alu -60348 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 322.5-3 chr1 180185722 180186122 + 1.5 NA intron (NM_002826, intron 7 of 11) MIRb|SINE|MIR 31053 NM_002826 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 407-35 chr9 73682836 73683273 + 1.5 NA Intergenic L1M1|LINE|L1 531189 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 285-7 chr10 98100769 98101114 + 1.5 NA Intergenic L2c|LINE|L2 -33683 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 212.5-11 chr14 42902296 42902486 + 1.5 NA Intergenic L1MCb|LINE|L1 1295535 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 342.5-14 chr17 29734423 29734690 + 1.5 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) 26876 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 186-18 chr3 119636073 119636264 + 1.5 NA Intergenic Intergenic 24422 NM_001369919 64091 Hs.534383 NM_022135 ENSG00000121577 POPDC2 POP2 popeye domain containing 2 protein-coding 643.5-2 chr16 65703646 65704274 + 1.5 NA Intergenic AluSc|SINE|Alu -127660 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 168.5-21 chr4 75423740 75423941 + 1.5 NA Intergenic Intergenic 69764 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 227-12 chr12 28515457 28515668 + 1.5 NA intron (NM_001352082, intron 13 of 13) intron (NM_001352082, intron 13 of 13) -324824 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 395.5-10 chr15 47607322 47607785 + 1.5 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -109952 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 287-41 chr7 35348102 35348369 + 1.5 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 34380 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 544-17 chr8 74304797 74305463 + 1.5 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 16231 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 693.5-7 chr8 43082828 43083445 + 1.5 NA exon (NM_002027, exon 7 of 9) exon (NM_002027, exon 7 of 9) -10370 NM_001277971 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein O-mannose kinase protein-coding 440-34 chr6 168280832 168281349 + 1.5 NA Intergenic Intergenic 38152 NR_110870 101929420 Hs.571211 NR_110870 ENSG00000234647 LOC101929420 - uncharacterized LOC101929420 ncRNA 319.5-31 chr8 128226595 128227028 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 76695 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 157-19 chr9 107872885 107873009 + 1.5 NA Intergenic Intergenic -383178 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 234-6 chr10 98568034 98568326 + 1.5 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -121217 NM_001322477 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 296.5-8 chr14 74663097 74663392 + 1.5 NA 3' UTR (NM_001039479, exon 20 of 20) 3' UTR (NM_001039479, exon 20 of 20) 49836 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 418.5-32 chr8 118401327 118401825 + 1.5 NA intron (NM_001349811, intron 3 of 4) AluJr|SINE|Alu -219425 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 190-16 chr8 55414925 55415076 + 1.5 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 40321 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 148.5-25 chr7 140851345 140851483 + 1.5 NA intron (NR_148928, intron 1 of 17) Charlie2b|DNA|hAT-Charlie 73515 NM_001354609 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 517.5-15 chr6 126763736 126764205 + 1.5 NA Intergenic Intergenic 279339 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 347-25 chr8 117001600 117002015 + 1.5 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 50832 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 455.5-8 chr16 25197786 25198300 + 1.5 NA Intergenic Intergenic -18904 NM_001169 343 Hs.176658 NM_001169 ENSG00000103375 AQP8 AQP-8 aquaporin 8 protein-coding 282.5-21 chr21 22809053 22809413 + 1.5 NA Intergenic Intergenic -270051 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 402.5-30 chr9 82134682 82135076 + 1.5 NA Intergenic Intergenic 146107 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 294-34 chr6 151600666 151600945 + 1.5 NA intron (NM_025059, intron 9 of 10) L1MB7|LINE|L1 -89691 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 377.5-3 chr13 73121251 73121745 + 1.5 NA Intergenic AluJb|SINE|Alu 62493 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 232-14 chr14 57399238 57399393 + 1.5 NA intron (NM_001011713, intron 3 of 4) intron (NM_001011713, intron 3 of 4) 8729 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 305-42 chr6 43113503 43113748 + 1.5 NA intron (NM_001270398, intron 1 of 19) intron (NM_001270398, intron 1 of 19) 36811 NM_001270398 5754 Hs.90572 NM_002821 ENSG00000112655 PTK7 CCK-4|CCK4 protein tyrosine kinase 7 (inactive) protein-coding 233.5-15 chr2 102847243 102847510 + 1.5 NA Intergenic Intergenic 48346 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 482.5-4 chr13 37348709 37349276 + 1.5 NA Intergenic L2a|LINE|L2 135792 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 374.5-19 chr3 116314815 116315274 + 1.5 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -44980 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 142-9 chr5 115867558 115867764 + 1.5 NA intron (NM_001318093, intron 2 of 6) intron (NM_001318093, intron 2 of 6) 25174 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 302-14 chr20 10618770 10619129 + 1.5 NA intron (NM_001009608, intron 6 of 7) intron (NM_001009608, intron 6 of 7) 30746 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 294-7 chr1 218861090 218861474 + 1.5 NA intron (NR_031644, intron 6 of 6) HSMAR2|DNA|TcMar-Mariner 57229 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 246.5-24 chr3 28939363 28939611 + 1.5 NA Intergenic L1MA9|LINE|L1 341452 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 381-20 chr5 115994 116367 + 1.5 NA intron (NM_052909, intron 2 of 19) Tigger1|DNA|TcMar-Tigger 24012 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 323-12 chr17 72946654 72946974 + 1.5 NA intron (NM_139177, intron 5 of 9) intron (NM_139177, intron 5 of 9) 145874 NM_001159770 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 478-10 chr15 68998068 68998531 + 1.5 NA intron (NR_033672, intron 2 of 16) intron (NR_033672, intron 2 of 16) -16396 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 399.5-3 chr10 96196736 96197153 + 1.5 NA non-coding (NR_047680, exon 15 of 16) non-coding (NR_047680, exon 15 of 16) 66322 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 186-22 chr4 188930068 188930252 + 1.5 NA Intergenic Intergenic 153503 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 411.5-16 chr2 120865999 120866380 + 1.5 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 73908 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 274 chr1 23280642 23280887 + 1.5 NA TTS (NR_110616) TTS (NR_110616) 4754 NR_110616 100996511 Hs.99836 NR_110616 LINC01355 - long intergenic non-protein coding RNA 1355 ncRNA 245.5-9 chr14 37634944 37635338 + 1.5 NA intron (NM_001310135, intron 3 of 32) L1MD1|LINE|L1 39512 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 231.5-23 chr3 151805699 151805966 + 1.5 NA intron (NR_110203, intron 1 of 2) LTR21B|LTR|ERV1 -8284 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 174-5 chr12 28832024 28832144 + 1.5 NA Intergenic L1MEc|LINE|L1 -317194 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 215-22 chr3 55297024 55297189 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR 118934 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 347.5-30 chr8 42277883 42278202 + 1.5 NA intron (NM_001242778, intron 2 of 20) L2b|LINE|L2 6740 NR_040009 3551 Hs.597664 NM_001556 ENSG00000104365 IKBKB IKK-beta|IKK2|IKKB|IMD15|IMD15A|IMD15B|NFKBIKB inhibitor of nuclear factor kappa B kinase subunit beta protein-coding 230.5-42 chr6 10714481 10714715 + 1.5 NA Intergenic SVA_C|Retroposon|SVA -8317 NM_001165258 51522 Hs.519557 NM_016462 ENSG00000111843 TMEM14C C6orf53|HSPC194|MSTP073|NET26|bA421M1.6 transmembrane protein 14C protein-coding 115.5-10 chr22 19749004 19749138 + 1.5 NA Intergenic Intergenic -7632 NM_005992 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 421-27 chr4 121768683 121769049 + 1.5 NA Intergenic Intergenic -3466 NM_001317837 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 692-3 chr10 38813701 38814337 + 1.5 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 117423 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 260-19 chr20 42661873 42662151 + 1.5 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -23471 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 288-38 chr8 69667776 69668124 + 1.5 NA 3' UTR (NM_001146008, exon 8 of 8) 3' UTR (NM_001146008, exon 8 of 8) 75050 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 223-5 chr11 84748509 84748778 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -27701 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 354.5-22 chr20 31850386 31850741 + 1.5 NA intron (NM_001320479, intron 7 of 9) intron (NM_001320479, intron 7 of 9) -4959 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 271-25 chr5 118626172 118626497 + 1.5 NA intron (NR_104998, intron 4 of 4) AluSx3|SINE|Alu 30146 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 277-27 chr2 227677471 227677852 + 1.5 NA Intergenic Intergenic 28995 NM_001371412 221.5-9 chr15 67800751 67800970 + 1.5 NA intron (NM_001206804, intron 21 of 21) Charlie15b|DNA|hAT-Charlie -24649 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 395.5-17 chr2 130776487 130776953 + 1.5 NA Intergenic Intergenic 20376 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 149-7 chr2 209223146 209223293 + 1.5 NA Intergenic AluSx3|SINE|Alu -200828 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 219.5-21 chr22 32512680 32512836 + 1.5 NA 3' UTR (NM_133633, exon 12 of 12) 3' UTR (NM_133633, exon 12 of 12) 37521 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 423-8 chr14 61674559 61674938 + 1.5 NA Intergenic L1PA8|LINE|L1 -20765 NM_001530 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 255-32 chr8 128326159 128326389 + 1.5 NA Intergenic MIR|SINE|MIR 176158 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 315.5-5 chr1 220303476 220303882 + 1.5 NA Intergenic Intergenic -31226 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 251-6 chr14 45937518 45937770 + 1.5 NA Intergenic L1MCb|LINE|L1 -126515 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 290.5-15 chr2 58853555 58853789 + 1.5 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) 332919 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 313-3 chr10 24489310 24489579 + 1.5 NA intron (NM_001282770, intron 2 of 11) intron (NM_001282770, intron 2 of 11) 22913 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 301-22 chr2 12230824 12231297 + 1.5 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 31930 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 436-24 chr3 70325814 70326511 + 1.5 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat -13524 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 266.5-7 chr14 47276613 47276926 + 1.5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 66477 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 383.5-7 chr13 80530740 80531077 + 1.5 NA Intergenic L1MA9|LINE|L1 -189782 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 443-27 chr3 47286295 47286668 + 1.5 NA intron (NM_025010, intron 1 of 9) HAL1|LINE|L1 3537 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 286-32 chr7 118667620 118667911 + 1.5 NA Intergenic L1M4|LINE|L1 443061 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 562.5-9 chr11 94181651 94182236 + 1.5 NA TTS (NM_015368) TTS (NM_015368) 53102 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 418-26 chr7 65320937 65321319 + 1.5 NA Intergenic AluJb|SINE|Alu -52671 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 275.5-14 chr18 2177524 2177925 + 1.5 NA Intergenic Intergenic 393781 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 170-5 chr11 107742052 107742233 + 1.5 NA Intergenic L1P4a|LINE|L1 -30086 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 261-23 chr5 151363887 151364127 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -16448 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 399-28 chr3 169409562 169409991 + 1.5 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -38091 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 284.5-36 chr6 45375995 45376184 + 1.5 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 1429 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 326-8 chr10 18273428 18273739 + 1.5 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) 12861 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 136.5-23 chrX 53176199 53176349 + 1.5 NA TTS (NR_148672) TTS (NR_148672) 19214 NR_106955 102465539 NR_106955 ENSG00000276575 MIR6895 hsa-mir-6895 microRNA 6895 ncRNA 531.5-10 chr5 83243909 83244540 + 1.5 NA intron (NM_001318012, intron 6 of 7) L1MEc|LINE|L1 166677 NM_003401 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 456.5-12 chr3 131898780 131899381 + 1.5 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 86851 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 197-25 chr8 135669567 135669797 + 1.5 NA Intergenic Intergenic 212226 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 212-19 chr4 40052945 40053098 + 1.5 NA intron (NR_027277, intron 1 of 2) intron (NR_027277, intron 1 of 2) -3829 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 363-18 chr18 64485655 64486132 + 1.5 NA Intergenic L1ME3B|LINE|L1 -225838 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 203-25 chr7 113467553 113467790 + 1.5 NA Intergenic HAL1b|LINE|L1 -349089 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 339-39 chr8 83076862 83077236 + 1.5 NA Intergenic Intergenic 164945 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 230-6 chr12 8493093 8493413 + 1.5 NA Intergenic Intergenic -20250 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 264-7 chr14 68780035 68780335 + 1.5 NA Intergenic Intergenic 13729 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 118.5-4 chr18 2106437 2106587 + 1.5 NA Intergenic Intergenic 464993 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 223.5-10 chr12 61306798 61307110 + 1.5 NA Intergenic L1M1|LINE|L1 885885 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 302.5-3 chr1 226197767 226198062 + 1.5 NA Intergenic Intergenic -11173 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 249-32 chr7 49726516 49726806 + 1.5 NA Intergenic L1MC3|LINE|L1 -46977 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 289-25 chr2 96246984 96247396 + 1.5 NA Intergenic Intergenic 18807 NM_001193304 55654 Hs.164303 NM_017849 ENSG00000135956 TMEM127 - transmembrane protein 127 protein-coding 330-45 chr8 132467531 132467941 + 1.5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 13359 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 239-10 chr12 117819093 117819402 + 1.5 NA intron (NM_173598, intron 3 of 19) intron (NM_173598, intron 3 of 19) 149743 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 417-28 chr3 49742602 49742925 + 1.5 NA intron (NM_001006115, intron 1 of 4) AluJb|SINE|Alu -18789 NM_013334 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB LGMDR19|MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 447-2 chr1 39064415 39064776 + 1.5 NA Intergenic AluSg|SINE|Alu -19572 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 245.5-12 chr15 75679764 75680017 + 1.5 NA intron (NM_001897, intron 8 of 9) AluSc8|SINE|Alu 30883 NM_153271 257364 Hs.8705 NM_153271 ENSG00000173548 SNX33 SH3PX3|SH3PXD3C|SNX30 sorting nexin 33 protein-coding 219-12 chr12 88524307 88524585 + 1.5 NA intron (NM_000899, intron 3 of 9) Charlie5|DNA|hAT-Charlie 56025 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 252-26 chr6 149308158 149308449 + 1.5 NA intron (NM_001292035, intron 2 of 6) L1ME4a|LINE|L1 -9409 NM_001369506 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 363-27 chr5 180034349 180034867 + 1.5 NA intron (NM_001280801, intron 2 of 7) L1MB7|LINE|L1 -19211 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 223-25 chr20 41654523 41654748 + 1.5 NA Intergenic Intergenic -36258 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 302-7 chr10 114894790 114895155 + 1.5 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) -43223 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 231-17 chr20 39825031 39825253 + 1.5 NA Intergenic Intergenic -179319 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 308.5-6 chr13 65731843 65732096 + 1.5 NA Intergenic Intergenic -134078 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 172-12 chr3 41142186 41142377 + 1.5 NA Intergenic Intergenic -57224 NM_001098209 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 292-9 chr16 25139069 25139295 + 1.5 NA intron (NM_001032391, intron 3 of 8) AluSc|SINE|Alu 9850 NR_039998 100506655 Hs.657576 NR_039998 ENSG00000260034 LCMT1-AS2 - LCMT1 antisense RNA 2 ncRNA 233.5-10 chr15 70604373 70604552 + 1.5 NA Intergenic Intergenic -11085 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 161.5-20 chr6 141444567 141444728 + 1.5 NA Intergenic L2a|LINE|L2 644152 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 257-31 chr3 77977485 77977770 + 1.5 NA Intergenic Intergenic 71336 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 311.5-29 chr21 30475825 30476147 + 1.5 NA Intergenic Intergenic 4381 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 438-13 chr15 62987905 62988281 + 1.5 NA Intergenic L1MEi|LINE|L1 -54654 NM_001365779 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 292-32 chr8 86429294 86429699 + 1.5 NA intron (NM_007013, intron 11 of 24) intron (NM_007013, intron 11 of 24) 79190 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 537-15 chr3 145661527 145662030 + 1.5 NA Intergenic Intergenic 407407 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 377-8 chr13 72333292 72333703 + 1.5 NA Intergenic Intergenic 394132 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 250-41 chrX 51603482 51603779 + 1.5 NA Intergenic Intergenic 15288 NM_001355276 347549 NM_001355276 ENSG00000224109 CENPVL3 CENPVP3 centromere protein V like 3 protein-coding 140-11 chr7 120224227 120224396 + 1.5 NA Intergenic Intergenic -48864 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 479.5-20 chr8 124298503 124298935 + 1.5 NA Intergenic Intergenic -51321 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 341-33 chr7 29889442 29889842 + 1.5 NA intron (NM_001080529, intron 7 of 8) intron (NM_001080529, intron 7 of 8) 83088 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 121.5-13 chr22 35970682 35970849 + 1.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) -9135 NM_001349996 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 287-35 chr5 161461464 161461765 + 1.5 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 86510 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 327-17 chr16 6766487 6766766 + 1.5 NA intron (NM_018723, intron 3 of 15) MER3|DNA|hAT-Charlie -7183 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 266-42 chr8 130634134 130634480 + 1.5 NA Intergenic L1MDa|LINE|L1 -190633 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 253.5-15 chr18 52199741 52199937 + 1.5 NA Intergenic L1ME3A|LINE|L1 -140358 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 250-18 chr2 28797557 28797757 + 1.5 NA intron (NM_206876, intron 8 of 8) L1PA16|LINE|L1 -13177 NM_182756 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 469-7 chr14 76731265 76731699 + 1.5 NA Intergenic MER34|LTR|ERV1 -29986 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 204.5-30 chr7 11592259 11592454 + 1.5 NA intron (NM_015204, intron 3 of 26) intron (NM_015204, intron 3 of 26) 239842 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 196.5-35 chr9 8298216 8298516 + 1.5 NA Intergenic Intergenic 435580 NM_001040712 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 372.5-15 chr3 67989456 67989706 + 1.5 NA Intergenic MIR3|SINE|MIR -2011 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 163.5-20 chr7 112308488 112308660 + 1.5 NA intron (NM_021994, intron 4 of 11) intron (NM_021994, intron 4 of 11) 101879 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 132-2 chr7 27576666 27576809 + 1.5 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -39237 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 282.5-9 chr11 65277096 65277377 + 1.5 NA intron (NM_002689, intron 5 of 17) AluJb|SINE|Alu 15274 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 159-7 chr9 35928848 35929065 + 1.5 NA Intergenic L1ME4a|LINE|L1 19466 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 172-16 chr9 108877288 108877499 + 1.5 NA intron (NM_001330749, intron 33 of 34) LTR50|LTR|ERVL 15127 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 286-13 chr16 73974621 73975016 + 1.5 NA Intergenic Intergenic 240703 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 225.5-26 chr22 28309555 28309803 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -150190 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 282.5-12 chr12 105874923 105875135 + 1.5 NA Intergenic L1MA3|LINE|L1 168255 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 445.5-8 chr2 48825751 48826205 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -70254 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 300-7 chr12 54941038 54941317 + 1.5 NA Intergenic Intergenic 32555 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 231.5-12 chr2 25936702 25936927 + 1.5 NA intron (NM_002254, intron 5 of 7) intron (NM_002254, intron 5 of 7) 45683 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 575.5-10 chr6 35083205 35083709 + 1.5 NA exon (NM_015245, exon 20 of 24) exon (NM_015245, exon 20 of 24) 57882 NR_158874 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 391-14 chr20 32872068 32872488 + 1.5 NA intron (NM_001143967, intron 3 of 26) MIR|SINE|MIR 13355 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 280.5-20 chr20 23263688 23263916 + 1.5 NA Intergenic Intergenic -86989 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 248.5-22 chr5 66248159 66248419 + 1.5 NA Intergenic MER63C|DNA|hAT-Blackjack -38843 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 261.5-4 chr10 24330781 24331050 + 1.5 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 55230 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 288.5-31 chr3 186565337 186565689 + 1.5 NA intron (NM_001134415, intron 1 of 7) intron (NM_001134415, intron 1 of 7) 1826 NM_018138 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 304.5-32 chr4 159870368 159870638 + 1.5 NA Intergenic Intergenic -92719 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 178-13 chr3 35074618 35074761 + 1.5 NA intron (NR_110817, intron 2 of 3) L1MC4a|LINE|L1 319334 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 162-6 chr2 22183230 22183358 + 1.5 NA Intergenic Intergenic -353185 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 432.5-12 chr2 74544330 74544791 + 1.5 NA intron (NM_032603, intron 4 of 13) MIRc|SINE|MIR -4460 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 368-26 chr3 167172783 167173069 + 1.5 NA Intergenic Intergenic 207357 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 304-33 chr5 175115360 175115695 + 1.5 NA Intergenic MIR|SINE|MIR -119796 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 193-9 chr2 67685903 67686094 + 1.5 NA Intergenic MER94|DNA|hAT-Blackjack 139564 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 305-28 chr22 26942618 26942924 + 1.5 NA Intergenic Intergenic 39479 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 187.5-3 chr10 53264359 53264504 + 1.5 NA Intergenic Intergenic -492731 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 260-2 chr1 30465008 30465278 + 1.5 NA Intergenic Intergenic -253629 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 243-33 chr8 62471333 62471710 + 1.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 222667 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 359-17 chr15 80097047 80097371 + 1.5 NA intron (NM_001242912, intron 2 of 6) AluSx|SINE|Alu -1207 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 404-22 chr2 127629979 127630375 + 1.5 NA intron (NM_001080527, intron 34 of 46) intron (NM_001080527, intron 34 of 46) -15687 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 339-6 chr12 16576719 16576945 + 1.5 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 28547 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 348-25 chr4 99804052 99804448 + 1.5 NA Intergenic Intergenic -12577 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 230.5-18 chr13 39219686 39219952 + 1.5 NA Intergenic L1ME3A|LINE|L1 181363 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 281-11 chr12 43755020 43755237 + 1.5 NA exon (NM_001098614, exon 2 of 9) exon (NM_001098614, exon 2 of 9) 3662 NM_001271826 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 350-11 chr16 66854196 66854614 + 1.5 NA TTS (NM_001365337) TTS (NM_001365337) 9476 NM_001014435 766 Hs.37014 NM_005182 ENSG00000168748 CA7 CA-VII|CAVII carbonic anhydrase 7 protein-coding 368.5-14 chr15 56741025 56741371 + 1.5 NA Intergenic L1P4|LINE|L1 -7112 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 242.5-10 chr2 22433535 22433718 + 1.5 NA Intergenic Intergenic -102853 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 209-28 chr9 101919670 101919852 + 1.5 NA Intergenic LTR38B|LTR|ERV1 -181181 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 389-21 chr2 118754395 118754808 + 1.5 NA Intergenic Intergenic 93582 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 590-18 chr9 100910196 100910733 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack -118263 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 337.5-13 chr19 41074760 41075101 + 1.5 NA Intergenic L1PB4|LINE|L1 -13521 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 307-13 chr19 51995671 51995918 + 1.5 NA intron (NM_198480, intron 5 of 5) AluJb|SINE|Alu -8954 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 411.5-14 chr17 72680070 72680457 + 1.5 NA intron (NM_001352692, intron 7 of 9) L1MB5|LINE|L1 -39791 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 489-9 chr12 26756093 26756575 + 1.5 NA intron (NM_002223, intron 2 of 56) MER41-int|LTR|ERV1 76860 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 261.5-26 chr3 139265379 139265583 + 1.5 NA Intergenic Intergenic -31959 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 270.5-24 chr5 151686387 151686689 + 1.5 NA non-coding (NR_109873, exon 5 of 5) non-coding (NR_109873, exon 5 of 5) 377 NM_003118 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 201-26 chr9 75186599 75186834 + 1.5 NA Intergenic Intergenic 98202 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 181.5-2 chr1 118501364 118501600 + 1.5 NA Intergenic Intergenic -316254 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 379-32 chr5 27237007 27237476 + 1.5 NA Intergenic Intergenic -198655 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 259.5-3 chr1 176123219 176123430 + 1.5 NA intron (NM_022457, intron 8 of 19) intron (NM_022457, intron 8 of 19) 83920 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 261.5-36 chr8 106372888 106373202 + 1.5 NA intron (NM_018002, intron 2 of 15) MER2B|DNA|TcMar-Tigger -74879 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 288.5 chr1 33459793 33459985 + 1.5 NA Intergenic L2|LINE|L2 -12756 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 233-31 chr8 117217806 117218161 + 1.5 NA Intergenic L1MEd|LINE|L1 82988 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 183-25 chr8 127377896 127378067 + 1.5 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -22418 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 235.5-3 chr1 107997869 107998203 + 1.5 NA Intergenic Intergenic -32856 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 308.5-33 chr8 123040771 123041128 + 1.5 NA intron (NM_024295, intron 1 of 7) L2a|LINE|L2 1353 NM_024295 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 171-2 chr12 47937333 47937476 + 1.5 NA Intergenic Intergenic -26143 NM_001143841 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 529.5-12 chr17 71344330 71344830 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -142401 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 256.5-18 chr2 62186113 62186471 + 1.5 NA Intergenic Intergenic -9823 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 474.5-4 chr1 187036042 187036592 + 1.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -56525 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 338-41 chr9 109578670 109578907 + 1.5 NA Intergenic AluSq2|SINE|Alu -62000 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 243.5-22 chr3 16981629 16981927 + 1.5 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 48582 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 224-11 chr17 29758614 29758769 + 1.5 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) 2741 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 240.5-28 chr8 15295895 15296174 + 1.5 NA Intergenic L1MD2|LINE|L1 -57603 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 237.5-22 chr7 33297213 33297478 + 1.5 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 167781 NM_001348043 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 226.5-23 chr5 145978545 145978844 + 1.5 NA intron (NM_152550, intron 2 of 9) (A)n|Simple_repeat|Simple_repeat 42116 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 364.5-16 chr20 45858978 45859346 + 1.5 NA intron (NM_080752, intron 1 of 1) MER102a|DNA|hAT-Charlie 1548 NM_080752 140831 Hs.292135 NM_080752 ENSG00000132801 ZSWIM3 C20orf164|PPP1R174 zinc finger SWIM-type containing 3 protein-coding 369-28 chr3 89625775 89626084 + 1.5 NA Intergenic Intergenic 518308 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 321.5-15 chr15 41705011 41705315 + 1.5 NA intron (NM_001164273, intron 5 of 23) intron (NM_001164273, intron 5 of 23) 13578 NR_030356 693211 NR_030356 ENSG00000207766 MIR626 MIRN626|hsa-mir-626 microRNA 626 ncRNA 171-17 chr7 24971727 24971876 + 1.5 NA intron (NM_015550, intron 1 of 22) MIR|SINE|MIR 8377 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 176-11 chr3 121598984 121599181 + 1.5 NA intron (NM_016298, intron 1 of 3) intron (NM_016298, intron 1 of 3) 5703 NM_016298 51725 Hs.272564 NM_016298 ENSG00000163833 FBXO40 FBX40 F-box protein 40 protein-coding 347.5-23 chr5 106726481 106727001 + 1.5 NA Intergenic Intergenic 284273 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 340-28 chr22 35313255 35313691 + 1.5 NA intron (NR_156428, intron 1 of 13) intron (NR_156428, intron 1 of 13) 13579 NR_024194 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 332.5-7 chr18 3918850 3919254 + 1.5 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 33699 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 346-20 chr2 17883524 17883811 + 1.5 NA intron (NM_002252, intron 1 of 2) L2c|LINE|L2 5000 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 377-27 chr6 51516152 51516652 + 1.5 NA Intergenic (CATT)n|Simple_repeat|Simple_repeat -105468 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 312-16 chr21 31760077 31760378 + 1.5 NA Intergenic AluSz|SINE|Alu -28109 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 237-32 chr9 21340029 21340299 + 1.5 NA Intergenic Intergenic -4760 NM_018847 55958 Hs.701778 NM_018847 ENSG00000198642 KLHL9 - kelch like family member 9 protein-coding 244.5-3 chr1 103899898 103900217 + 1.5 NA Intergenic LTR16A|LTR|ERVL 150216 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 173-4 chr17 30382465 30382629 + 1.5 NA intron (NM_001199775, intron 1 of 20) intron (NM_001199775, intron 1 of 20) 2069 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 338.5-21 chr21 27384435 27384767 + 1.5 NA Intergenic Intergenic -337778 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 183.5-28 chr7 52381616 52381738 + 1.5 NA Intergenic Intergenic -653956 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 588.5-7 chr2 117088985 117089509 + 1.5 NA Intergenic HAL1b|LINE|L1 -725444 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 227.5-37 chr9 137733234 137733500 + 1.5 NA intron (NM_001354263, intron 4 of 26) intron (NM_001354263, intron 4 of 26) 55039 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 316-7 chr11 78858819 78859059 + 1.5 NA intron (NM_001098816, intron 10 of 33) intron (NM_001098816, intron 10 of 33) -284075 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 343-23 chr3 102053282 102053669 + 1.5 NA Intergenic Intergenic -110230 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 255.5-27 chr8 123740987 123741314 + 1.5 NA Intergenic Intergenic -3757 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 171-16 chr6 127051288 127051474 + 1.5 NA Intergenic L1PA16|LINE|L1 -67290 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 279.5-19 chr7 81207596 81207809 + 1.5 NA Intergenic Intergenic -285313 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 244.5-41 chr8 76627295 76627537 + 1.5 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -53831 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 189.5-21 chr4 38652347 38652495 + 1.5 NA intron (NR_026804, intron 1 of 7) AluSg|SINE|Alu -11778 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 316-18 chr2 139819614 139819940 + 1.5 NA Intergenic Intergenic 766908 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 292.5-13 chr16 12540362 12540588 + 1.5 NA intron (NM_032167, intron 20 of 20) MLT1D|LTR|ERVL-MaLR -179846 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 487.5-21 chr3 95823313 95823764 + 1.5 NA Intergenic Intergenic -140345 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 248-16 chr20 4971109 4971480 + 1.5 NA intron (NM_203327, intron 1 of 16) AluJb|SINE|Alu 30216 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 358-13 chr11 110185739 110186038 + 1.5 NA intron (NM_001260493, intron 15 of 15) LTR79|LTR|ERVL 92496 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 195.5-4 chr10 35561068 35561280 + 1.5 NA intron (NM_181698, intron 10 of 11) intron (NM_181698, intron 10 of 11) -44167 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 357-23 chr3 29205791 29206148 + 1.5 NA Intergenic Intergenic 74970 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 246-4 chr1 205468897 205469159 + 1.5 NA TTS (NR_148934) TTS (NR_148934) -12942 NR_103783 101669762 Hs.666219 NR_103783 BLACAT1 LINC00912|linc-UBC1|onco-lncRNA-30 bladder cancer associated transcript 1 ncRNA 199.5-40 chrX 73287765 73287941 + 1.5 NA Intergenic L1PB2|LINE|L1 -73002 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 278-16 chr2 86484855 86485126 + 1.5 NA exon (NM_001146688, exon 20 of 26) exon (NM_001146688, exon 20 of 26) 43529 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 231.5-39 chrX 6163997 6164211 + 1.5 NA intron (NM_181332, intron 1 of 5) intron (NM_181332, intron 1 of 5) -62254 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 403-22 chr2 5480227 5480538 + 1.5 NA Intergenic Intergenic 210736 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 289-22 chr2 58148666 58148929 + 1.5 NA intron (NM_001130482, intron 12 of 12) L1ME2|LINE|L1 92583 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 171-5 chr15 45720008 45720233 + 1.5 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 14925 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 305.5-43 chr8 133100196 133100541 + 1.5 NA intron (NM_003235, intron 43 of 47) L2a|LINE|L2 2234 NM_001282964 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 416.5-21 chr7 44251286 44251618 + 1.5 NA intron (NM_172081, intron 5 of 18) intron (NM_172081, intron 5 of 18) 50474 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 246 chr1 48474209 48474420 + 1.5 NA Intergenic Intergenic -2106 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 280.5-36 chr7 29940160 29940411 + 1.5 NA intron (NM_001145514, intron 5 of 7) intron (NM_001145514, intron 5 of 7) 49516 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 283-15 chr16 51589023 51589334 + 1.5 NA Intergenic Intergenic -173341 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 298.5-2 chr1 97980276 97980513 + 1.5 NA Intergenic Intergenic -38654 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 265-22 chr2 112477233 112477508 + 1.5 NA Intergenic Intergenic -4786 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 269.5-16 chr14 77506691 77506935 + 1.5 NA 3' UTR (NM_004863, exon 12 of 12) 3' UTR (NM_004863, exon 12 of 12) -7997 NM_182509 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 261.5-39 chr8 130509099 130509370 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -65560 NM_018482 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 119-3 chr5 23704982 23705116 + 1.5 NA Intergenic Intergenic 197394 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 186.5-8 chr14 50523805 50524054 + 1.5 NA intron (NM_198794, intron 2 of 31) intron (NM_198794, intron 2 of 31) 8640 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 389.5-9 chr10 130971424 130971684 + 1.5 NA Intergenic Intergenic -8886 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 488-19 chr8 111961016 111961426 + 1.5 NA Intergenic L1MB1|LINE|L1 584582 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 354.5-2 chr1 162680587 162680884 + 1.5 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 48271 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 631-16 chr8 119709302 119710081 + 1.5 NA Intergenic AluJb|SINE|Alu -36301 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 396.5-29 chr6 27692146 27692644 + 1.5 NA Intergenic AluSx1|SINE|Alu -1640 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 169-4 chr13 98056773 98056956 + 1.5 NA Intergenic Intergenic -85725 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 336-4 chr1 204317963 204318392 + 1.5 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 41752 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 369.5-5 chr12 1502544 1502919 + 1.5 NA non-coding (NR_028415, exon 2 of 2) non-coding (NR_028415, exon 2 of 2) 2240 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 267-40 chr5 33395619 33395826 + 1.5 NA Intergenic Intergenic -44974 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 279.5-12 chr4 116882429 116882771 + 1.5 NA Intergenic L1M5|LINE|L1 202976 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 237-11 chr2 127265156 127265431 + 1.5 NA intron (NM_001303418, intron 12 of 14) L1PA15-16|LINE|L1 28851 NM_001303416 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 271 chr1 116583448 116583685 + 1.5 NA intron (NM_001007237, intron 9 of 10) intron (NM_001007237, intron 9 of 10) -12473 NM_001144822 965 Hs.34341 NM_001779 ENSG00000116815 CD58 LFA-3|LFA3|ag3 CD58 molecule protein-coding 536-17 chr4 98894600 98895120 + 1.5 NA intron (NM_001968, intron 2 of 6) Tigger1|DNA|TcMar-Tigger 34273 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 354-14 chr2 74107473 74107772 + 1.5 NA 3' UTR (NM_001366022, exon 11 of 11) 3' UTR (NM_001366022, exon 11 of 11) 40290 NM_001035505 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 268.5-7 chr12 8903772 8904046 + 1.5 NA Intergenic L2|LINE|L2 -10600 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 213.5-23 chr3 174553224 174553503 + 1.5 NA Intergenic Intergenic -305971 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 236.5-15 chr15 100907370 100907715 + 1.5 NA intron (NM_000693, intron 11 of 12) MIR|SINE|MIR 11741 NR_135831 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 171-13 chr4 109589058 109589279 + 1.5 NA intron (NM_017918, intron 1 of 7) intron (NM_017918, intron 1 of 7) 28922 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 360-30 chr3 85519344 85519758 + 1.5 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 14492 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 195.5-30 chr6 141866323 141866485 + 1.5 NA Intergenic L1MD2|LINE|L1 222395 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 234-17 chr20 59632767 59633108 + 1.5 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 4328 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 493.5-17 chr7 7812709 7813059 + 1.5 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -94277 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 394.5-9 chr16 62544802 62545096 + 1.5 NA Intergenic Intergenic -508511 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 567.5-11 chr3 184338996 184339447 + 1.5 NA intron (NM_001366133, intron 1 of 4) intron (NM_001366133, intron 1 of 4) 388 NM_001366133 131408 Hs.591307 NM_144635 ENSG00000175182 FAM131A C3orf40|FLAT715|PRO1378 family with sequence similarity 131 member A protein-coding 269.5-4 chr10 33296392 33296644 + 1.5 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 38149 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 224-8 chr15 90529265 90529505 + 1.5 NA promoter-TSS (NM_022769) promoter-TSS (NM_022769) -538 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 218-30 chr6 60712904 60713088 + 1.5 NA Intergenic LTR78|LTR|ERV1 -861134 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 267.5-16 chr3 99637812 99638036 + 1.5 NA promoter-TSS (NM_020351) promoter-TSS (NM_020351) -670 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 358-12 chr11 35952240 35952700 + 1.5 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 8408 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 363-33 chr8 74483991 74484360 + 1.5 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) -64368 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 456-30 chr6 159955395 159956020 + 1.5 NA Intergenic Intergenic -13392 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 451-16 chr2 118096096 118096684 + 1.5 NA intron (NM_001321331, intron 2 of 5) intron (NM_001321331, intron 2 of 5) 7840 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 249.5-23 chr4 102706294 102706466 + 1.5 NA intron (NM_005908, intron 5 of 16) L1MA6|LINE|L1 54588 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 156.5-16 chr20 33437895 33438024 + 1.5 NA intron (NM_003098, intron 2 of 7) intron (NM_003098, intron 2 of 7) 5933 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 250.5-2 chr1 85605418 85605696 + 1.5 NA Intergenic Intergenic 24796 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 139-11 chr9 99702235 99702370 + 1.5 NA intron (NR_109802, intron 3 of 6) L1M6|LINE|L1 117587 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 343.5 chr1 22803534 22803982 + 1.5 NA intron (NM_004442, intron 3 of 15) AluJr|SINE|Alu 59468 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 260.5-9 chr14 20415349 20415551 + 1.5 NA Intergenic AluSq2|SINE|Alu -1949 NM_007110 7011 Hs.508835 NM_007110 ENSG00000129566 TEP1 TLP1|TP1|TROVE1|VAULT2|p240 telomerase associated protein 1 protein-coding 405.5-4 chr16 5515464 5515894 + 1.5 NA Intergenic Intergenic 100571 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 296-15 chr18 3234266 3234653 + 1.5 NA Intergenic Intergenic -13023 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 214-16 chr5 151572046 151572215 + 1.5 NA Intergenic L2a|LINE|L2 -3186 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 313.5-38 chr7 41737580 41737988 + 1.5 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -34694 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 487-13 chr13 106453840 106454293 + 1.5 NA Intergenic Intergenic 77502 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 552.5-15 chr4 83774366 83775028 + 1.5 NA Intergenic Intergenic 238589 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 286.5-12 chr16 81991461 81991695 + 1.5 NA 3' UTR (NM_145168, exon 3 of 3) 3' UTR (NM_145168, exon 3 of 3) 19892 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 268.5-29 chr6 44192885 44193111 + 1.5 NA Intergenic Intergenic -23928 NM_001315494 101929726 Hs.438979 NM_001315494 ENSG00000262179 MYMX MINION|hMINION myomixer, myoblast fusion factor protein-coding 269-8 chr10 111953916 111954310 + 1.5 NA Intergenic Intergenic 229652 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 364.5-15 chr2 236248382 236248664 + 1.5 NA intron (NM_212556, intron 1 of 5) AluSx|SINE|Alu 15822 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 319.5-32 chr9 38186340 38186710 + 1.5 NA Intergenic Intergenic -117298 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 336-9 chr10 104983677 104984042 + 1.5 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -317643 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 415-23 chr22 24033666 24034008 + 1.5 NA intron (NM_001199281, intron 1 of 36) L1MB7|LINE|L1 22467 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 251.5-5 chr10 119719645 119719893 + 1.5 NA Intergenic AluSx1|SINE|Alu -6278 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 567.5-6 chr15 47440147 47440525 + 1.5 NA intron (NM_001198999, intron 2 of 19) intron (NM_001198999, intron 2 of 19) 256247 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 235-4 chr10 43006338 43006566 + 1.5 NA Intergenic L1MC3|LINE|L1 8889 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 420.5-7 chr18 3509036 3509673 + 1.5 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 43104 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 348.5-29 chr9 99642792 99643211 + 1.5 NA intron (NR_109802, intron 3 of 6) L1MB1|LINE|L1 176888 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 320.5-13 chr2 14859648 14859991 + 1.5 NA Intergenic L1MA4|LINE|L1 227102 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 157-18 chr8 136705797 136705908 + 1.5 NA intron (NR_147196, intron 2 of 5) Charlie1a|DNA|hAT-Charlie 175054 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 131-3 chr16 1997608 1997719 + 1.5 NA TTS (NM_178167) TTS (NM_178167) 7693 NM_004209 9143 Hs.435277 NM_004209 ENSG00000127561 SYNGR3 - synaptogyrin 3 protein-coding 339.5-12 chr17 42492179 42492587 + 1.5 NA intron (NM_005177, intron 11 of 20) intron (NM_005177, intron 11 of 20) -2390 NR_049845 100847030 NR_049845 ENSG00000264314 MIR548AT - microRNA 548at ncRNA 228.5-6 chr10 128216415 128216656 + 1.5 NA Intergenic Intergenic -69415 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 162-11 chr7 89324179 89324296 + 1.5 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -528500 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 260.5-11 chr15 26996183 26996471 + 1.5 NA intron (NM_001270873, intron 2 of 5) L1M4b|LINE|L1 25146 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 197.5-17 chr16 63379239 63379409 + 1.5 NA Intergenic AluJb|SINE|Alu -1342886 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 395-22 chr4 45645764 45646091 + 1.5 NA Intergenic Intergenic 478127 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 267-33 chr4 53695225 53695529 + 1.5 NA promoter-TSS (NR_125918) promoter-TSS (NR_125918) -524 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 195-22 chr8 61323359 61323514 + 1.5 NA intron (NM_173519, intron 2 of 5) MLT1H|LTR|ERVL-MaLR 35466 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 231-10 chr17 31149333 31149618 + 1.5 NA intron (NM_001042492, intron 1 of 57) AluSx3|SINE|Alu 54498 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 277-17 chr15 52123045 52123229 + 1.5 NA intron (NM_006578, intron 10 of 10) MER110A|LTR|ERV1 -10362 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 309.5-21 chr5 33779821 33780075 + 1.5 NA intron (NM_001324511, intron 2 of 2) L1MA9|LINE|L1 112042 NM_001324512 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 409 chr1 221846736 221847110 + 1.5 NA Intergenic Intergenic -6257 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 218-27 chr5 160291704 160291878 + 1.5 NA intron (NR_131769, intron 2 of 7) intron (NR_131769, intron 2 of 7) 20773 NM_024565 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 232.5-17 chr14 99955269 99955477 + 1.5 NA Intergenic Intergenic -16049 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 194.5 chr1 51009785 51010015 + 1.5 NA Intergenic L1MEg2|LINE|L1 39655 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 203-10 chr2 72606148 72606377 + 1.5 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 219771 NM_015189 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 183-11 chr2 3711755 3711897 + 1.5 NA intron (NM_001287444, intron 2 of 10) intron (NM_001287444, intron 2 of 10) 4984 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 308-24 chr4 137002370 137002638 + 1.5 NA intron (NR_149105, intron 2 of 3) LTR16A|LTR|ERVL -191252 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 431.5-3 chr10 30287706 30288073 + 1.5 NA Intergenic Intergenic 61449 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 443-28 chr4 37361192 37361637 + 1.5 NA intron (NM_001144990, intron 3 of 6) L1PA16|LINE|L1 -92511 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 175-10 chr20 46670584 46670796 + 1.5 NA intron (NM_001193340, intron 1 of 12) MLT1H2|LTR|ERVL-MaLR 13795 NM_001193340 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 487-36 chr8 119872895 119873406 + 1.5 NA promoter-TSS (NM_001283012) promoter-TSS (NM_001283012) -505 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 267-38 chr4 172206169 172206390 + 1.5 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -392672 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 288.5-26 chr20 10549753 10550004 + 1.5 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 99817 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 209.5-12 chr14 22572102 22572243 + 1.5 NA intron (NM_001344, intron 2 of 2) intron (NM_001344, intron 2 of 2) -15110 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 354.5-34 chr6 143913187 143913550 + 1.5 NA intron (NM_001013623, intron 6 of 7) L1PA11|LINE|L1 48042 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 303.5-18 chr5 59316419 59316680 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 40421 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 333.5-19 chr6 124601776 124602115 + 1.5 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 318940 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 168-5 chr16 76123985 76124134 + 1.5 NA Intergenic Intergenic -153342 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 202.5 chr1 14868949 14869135 + 1.5 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -55087 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 408-4 chr10 55169331 55169782 + 1.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -368265 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 260-15 chr2 75750762 75751054 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -39993 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 161.5-24 chr8 123906003 123906178 + 1.5 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 54103 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 320-10 chr17 71099023 71099430 + 1.5 NA non-coding (NR_104152, exon 4 of 4) non-coding (NR_104152, exon 4 of 4) 102953 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 207-24 chr6 47555907 47556098 + 1.5 NA intron (NM_012120, intron 5 of 17) intron (NM_012120, intron 5 of 17) 78213 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 525.5-6 chr17 34307000 34307669 + 1.5 NA Intergenic Intergenic -12101 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 363.5-10 chr15 61594308 61594652 + 1.5 NA Intergenic Intergenic -135438 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 345.5-27 chr6 64913990 64914336 + 1.5 NA intron (NM_001292009, intron 15 of 43) intron (NM_001292009, intron 15 of 43) -387255 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 387-19 chr2 159048073 159048526 + 1.5 NA intron (NM_001350065, intron 3 of 27) intron (NM_001350065, intron 3 of 27) 79659 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 137-4 chr3 188083002 188083171 + 1.5 NA Intergenic Intergenic -70812 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 340-30 chr4 55373721 55374149 + 1.5 NA TTS (NM_024592) TTS (NM_024592) 11645 NR_037969 100506462 Hs.718667 NR_037969 ENSG00000249700 SRD5A3-AS1 - SRD5A3 antisense RNA 1 ncRNA 214-9 chr17 72802562 72802761 + 1.5 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -162189 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 373-15 chr14 50100060 50100617 + 1.5 NA intron (NR_131171, intron 1 of 8) intron (NR_131171, intron 1 of 8) 4705 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 275-5 chr10 5209544 5209760 + 1.5 NA intron (NM_001818, intron 5 of 8) THE1B|LTR|ERVL-MaLR 12815 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 215.5-20 chr2 59624514 59624737 + 1.5 NA Intergenic Intergenic 406917 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 316.5-23 chr6 82187249 82187751 + 1.5 NA intron (NM_015525, intron 25 of 28).2 HAL1|LINE|L1 60244 NM_001300906 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 223.5-11 chr13 99831133 99831457 + 1.5 NA intron (NR_120421, intron 1 of 4) MLT1D|LTR|ERVL-MaLR -102294 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 260-33 chr7 132345083 132345332 + 1.5 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 84346 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 153.5-4 chr18 63297212 63297314 + 1.5 NA intron (NM_000633, intron 2 of 2) MER33|DNA|hAT-Charlie 22117 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 119.5-4 chr14 61702584 61702663 + 1.5 NA intron (NM_001243084, intron 1 of 14) intron (NM_001243084, intron 1 of 14) 5001 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 412.5-25 chr5 30650641 30651053 + 1.5 NA Intergenic Intergenic -542839 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 232.5-15 chr14 43227686 43227871 + 1.5 NA Intergenic Intergenic 1279505 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 265.5-20 chr2 206373107 206373381 + 1.5 NA Intergenic L1MA7|LINE|L1 -70288 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 417.5-18 chr5 30812280 30812739 + 1.5 NA Intergenic LTR33|LTR|ERVL -381177 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 328.5-15 chr17 42673024 42673281 + 1.5 NA intron (NR_073573, intron 6 of 12) intron (NR_073573, intron 6 of 12) 2859 NR_073574 79990 Hs.632251 NM_024927 ENSG00000068137 PLEKHH3 - pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding 430.5-26 chr9 12554741 12555380 + 1.5 NA Intergenic Intergenic -138325 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 340.5-4 chr10 23554042 23554334 + 1.5 NA Intergenic Intergenic 114919 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 303-9 chr13 94580741 94581008 + 1.5 NA intron (NM_001304430, intron 6 of 11) AluJr|SINE|Alu 15278 NR_130731 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 222-10 chr18 1816772 1817015 + 1.5 NA Intergenic L1MB8|LINE|L1 -457264 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 363-14 chr14 54248329 54248837 + 1.5 NA Intergenic Intergenic -148285 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 405-2 chr10 26166327 26166704 + 1.5 NA intron (NM_017433, intron 27 of 34) AluJr|SINE|Alu -49792 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 266-25 chr2 167900776 167901097 + 1.5 NA intron (NR_131227, intron 1 of 4) L1M4a1|LINE|L1 40208 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 137-5 chr4 111685047 111685249 + 1.5 NA Intergenic Intergenic -460306 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 128-2 chr17 39814432 39814561 + 1.5 NA intron (NM_001257409, intron 2 of 5) MLT1C|LTR|ERVL-MaLR -36271 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 264.5-39 chr8 132654949 132655165 + 1.5 NA intron (NR_135912, intron 3 of 11) L1M4|LINE|L1 20488 NM_001321961 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 269-12 chr12 13730869 13731150 + 1.5 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 249347 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 285-11 chr11 113221146 113221377 + 1.5 NA intron (NM_000615, intron 8 of 17) intron (NM_000615, intron 8 of 17) 52640 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 552-15 chr20 58948890 58949449 + 1.5 NA Intergenic HSMAR1|DNA|TcMar-Mariner -32087 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 301.5-22 chr8 117297717 117298126 + 1.5 NA Intergenic Intergenic 162926 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 221-7 chr15 40494596 40494868 + 1.5 NA Intergenic AluJr|SINE|Alu 23771 NM_130468 113189 Hs.442449 NM_130468 ENSG00000169105 CHST14 ATCS|D4ST1|EDSMC1|HNK1ST carbohydrate sulfotransferase 14 protein-coding 287.5-9 chr16 48436127 48436403 + 1.5 NA Intergenic Intergenic -50852 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 445-7 chr14 81628875 81629397 + 1.5 NA Intergenic LTR78B|LTR|ERV1 -6075 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 157.5-5 chr15 83646038 83646206 + 1.5 NA Intergenic Intergenic -8001 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 487-10 chr11 4957703 4958266 + 1.5 NA Intergenic LTR38C|LTR|ERV1 -2271 NM_001004748 401667 Hs.553805 NM_001004748 ENSG00000205496 OR51A2 - olfactory receptor family 51 subfamily A member 2 protein-coding 283.5-22 chr22 39273222 39273506 + 1.5 NA Intergenic Intergenic -28382 NM_002608 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 253.5-30 chr6 155242451 155242711 + 1.5 NA intron (NM_001010927, intron 2 of 12) intron (NM_001010927, intron 2 of 12) -21432 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 368.5-19 chr19 30159319 30159823 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -212813 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 382-11 chr14 60336304 60336699 + 1.5 NA Intergenic L1PA7|LINE|L1 13305 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 258-22 chr5 89504769 89505114 + 1.5 NA Intergenic L1PB3|LINE|L1 511779 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 381.5-8 chr19 14829623 14830113 + 1.5 NA intron (NM_001370480, intron 1 of 2) (CA)n|Simple_repeat|Simple_repeat 5317 NM_001370481 26659 Hs.137573 NM_017506 ENSG00000188269 OR7A5 HTPCR2 olfactory receptor family 7 subfamily A member 5 protein-coding 431.5-16 chr5 145847490 145847976 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -12391 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 353.5-8 chr12 45361487 45361973 + 1.5 NA intron (NM_001025356, intron 8 of 19) L1MB7|LINE|L1 69040 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 274-4 chr10 9312905 9313198 + 1.5 NA Intergenic Intergenic -17458 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 340-11 chr11 26700685 26700970 + 1.5 NA intron (NM_178498, intron 6 of 14) intron (NM_178498, intron 6 of 14) 21233 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 161-14 chr5 129119280 129119476 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 21690 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 346 chr1 68887038 68887298 + 1.5 NA Intergenic AluJb|SINE|Alu -168730 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 538.5-17 chr5 22794799 22795458 + 1.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 58216 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 137.5-2 chr1 168926963 168927166 + 1.5 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 140123 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 643-5 chr10 100293050 100293564 + 1.5 NA exon (NM_001253837, exon 10 of 16) exon (NM_001253837, exon 10 of 16) -6595 NM_001282436 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 144-6 chr20 55069498 55069655 + 1.5 NA Intergenic Intergenic -353467 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 186-7 chr15 95930433 95930608 + 1.5 NA Intergenic Intergenic 197321 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 305.5-14 chr2 15196075 15196388 + 1.5 NA intron (NR_052013, intron 47 of 50) MER50|LTR|ERV1 365103 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 240-29 chr22 34937341 34937569 + 1.5 NA intron (NR_138042, intron 1 of 4) L1MA6|LINE|L1 60461 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 367-3 chr1 76700973 76701427 + 1.5 NA Intergenic L1MA8|LINE|L1 78067 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 291.5-25 chr8 117069138 117069384 + 1.5 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -65734 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 123-6 chr7 31292268 31292399 + 1.5 NA Intergenic Intergenic 48393 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 342.5-16 chr18 7329173 7329711 + 1.5 NA Intergenic Intergenic 98338 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 235-3 chr10 27544511 27544744 + 1.5 NA Intergenic Intergenic 40323 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 188.5-2 chr1 168537010 168537210 + 1.5 NA Intergenic L2-1_AMi|LINE|L2 6887 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 244.5-27 chr3 95316354 95316643 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 366695 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 348.5-23 chr6 126037848 126038329 + 1.5 NA intron (NM_001031712, intron 12 of 12) intron (NM_001031712, intron 12 of 12) 51548 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 319.5-19 chr22 31887192 31887516 + 1.5 NA intron (NR_146296, intron 38 of 42) AluSq2|SINE|Alu 51100 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 262-12 chr12 18837336 18837607 + 1.5 NA Intergenic Intergenic 99352 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 321.5-17 chr16 82223080 82223405 + 1.5 NA Intergenic L1MA4|LINE|L1 -53018 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 312-34 chr8 127457751 127458110 + 1.5 NA intron (NR_024393, intron 4 of 4) L2a|LINE|L2 24209 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 419-10 chr12 30513679 30514141 + 1.5 NA Intergenic AluJr|SINE|Alu 163334 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 423.5-26 chr7 36176672 36177216 + 1.5 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 23690 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 201.5-12 chr14 76311047 76311330 + 1.5 NA Intergenic Intergenic -60159 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 156-8 chr14 89210751 89210974 + 1.5 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 206371 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 160.5-6 chr10 30257497 30257626 + 1.5 NA Intergenic L1MB4|LINE|L1 45709 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 454-3 chr10 121130571 121130903 + 1.5 NA Intergenic Intergenic 279375 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 257.5-23 chr20 11260451 11260772 + 1.5 NA Intergenic Intergenic 12772 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 201-22 chr7 34108564 34108815 + 1.5 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 203150 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 382-42 chr8 17713198 17713586 + 1.5 NA intron (NM_001001931, intron 2 of 11) intron (NM_001001931, intron 2 of 11) 8829 NM_001001931 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 140-4 chr16 76123194 76123303 + 1.5 NA Intergenic Intergenic -154153 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 240-11 chr11 126422680 126423023 + 1.5 NA TTS (NM_032531) TTS (NM_032531) 16764 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 588.5-4 chr15 37165031 37165449 + 1.5 NA Intergenic Intergenic -63929 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 202-11 chr2 219960461 219960694 + 1.5 NA Intergenic MER4A1|LTR|ERV1 -54012 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 288.5-34 chr5 53938644 53938992 + 1.5 NA intron (NM_019087, intron 4 of 4) AluSz6|SINE|Alu 12781 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 382.5-14 chr20 39248958 39249272 + 1.5 NA Intergenic MIR|SINE|MIR -24367 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 284-32 chr5 151343068 151343409 + 1.5 NA intron (NM_181776, intron 3 of 9) intron (NM_181776, intron 3 of 9) 4321 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 236-34 chr8 127922549 127922820 + 1.5 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 26039 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 196.5-13 chr18 51165785 51165939 + 1.5 NA Intergenic Intergenic 31819 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 330.5-10 chr11 4785948 4786266 + 1.5 NA Intergenic Intergenic -16169 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 150.5-19 chr6 21700551 21700653 + 1.5 NA intron (NR_015410, intron 2 of 11) BLACKJACK|DNA|hAT-Blackjack 34189 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 208.5-9 chr18 73553556 73553809 + 1.5 NA Intergenic L1MC5a|LINE|L1 228741 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 145-6 chr8 102351316 102351447 + 1.5 NA intron (NM_001282873, intron 5 of 58) L1MB2|LINE|L1 61308 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 204-22 chr8 89561384 89561598 + 1.5 NA Intergenic MER54A|LTR|ERVL 196220 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 211.5-23 chr22 43694791 43695120 + 1.5 NA intron (NM_198856, intron 8 of 29) L1ME1|LINE|L1 117350 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 233-4 chr10 57960361 57960644 + 1.5 NA Intergenic Intergenic 307392 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 295.5-10 chr18 4634587 4634855 + 1.5 NA Intergenic L1MA4|LINE|L1 -179414 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 287-33 chr5 4661381 4661713 + 1.5 NA Intergenic Intergenic -111934 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 281.5-15 chr2 4746475 4746754 + 1.5 NA Intergenic Intergenic -90392 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 289.5-41 chr9 78163351 78163687 + 1.5 NA Intergenic HAL1|LINE|L1 -72556 NM_001098802 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 438.5-5 chr2 39777383 39777865 + 1.5 NA intron (NR_135664, intron 1 of 11) intron (NR_135664, intron 1 of 11) 1634 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 230.5-31 chr3 53685302 53685592 + 1.5 NA intron (NM_000720, intron 8 of 48) L1MEf|LINE|L1 160972 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 407-10 chr12 113110968 113111330 + 1.5 NA intron (NM_001193520, intron 14 of 21) intron (NM_001193520, intron 14 of 21) 24450 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 378.5-20 chr21 19409590 19410010 + 1.5 NA Intergenic Intergenic 489955 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 203-11 chr2 77056227 77056411 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 70354 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 236.5-20 chr2 106763730 106764018 + 1.5 NA Intergenic Intergenic 122154 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 313-34 chr7 40038269 40038644 + 1.5 NA intron (NM_003718, intron 5 of 13) L1MC5a|LINE|L1 88096 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 348-14 chr14_GL000225v1_random 6702 7201 + 1.5 NA NA BSR/Beta|Satellite|Satellite NA NA 424-10 chr2 231485991 231486579 + 1.5 NA Intergenic L1MC4a|LINE|L1 -21801 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23|Nsr1 nucleolin protein-coding 298.5-25 chr7 99959947 99960241 + 1.5 NA Intergenic SATR1|Satellite|Satellite 15937 NM_001185 563 Hs.546239 NM_001185 ENSG00000160862 AZGP1 ZA2G|ZAG alpha-2-glycoprotein 1, zinc-binding protein-coding 261.5-14 chr15 56973122 56973342 + 1.5 NA intron (NM_207038, intron 3 of 19) L1MC4|LINE|L1 53787 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 430-17 chr3 12139007 12139425 + 1.5 NA intron (NM_133625, intron 1 of 12) CR1_Mam|LINE|CR1 19696 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 218-22 chr2 234582594 234582883 + 1.5 NA Intergenic Intergenic -85657 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 202.5-27 chr7 95923775 95923981 + 1.5 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 151372 NM_001135556 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 428-26 chr7 30370579 30371166 + 1.5 NA non-coding (NR_002186, exon 1 of 1) non-coding (NR_002186, exon 1 of 1) 822 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 383.5-24 chr9 107319617 107319950 + 1.5 NA intron (NM_001244724, intron 6 of 9) intron (NM_001244724, intron 6 of 9) 35014 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 199-2 chr10 24139466 24139618 + 1.5 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -69249 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 265.5-26 chr4 85718554 85718964 + 1.5 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -3709 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 216.5-36 chr8 32024089 32024362 + 1.5 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -1511 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 396.5-31 chr8 64942119 64942465 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -143555 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 208.5 chr1 175542572 175542814 + 1.5 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 200902 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 322.5-30 chr8 123266703 123266965 + 1.5 NA intron (NM_001017926, intron 2 of 3) intron (NM_001017926, intron 2 of 3) 7452 NR_037874 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 226.5-7 chr15 56207075 56207383 + 1.5 NA intron (NM_001370561, intron 4 of 11) L1MB3|LINE|L1 -17297 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 225.5 chr1 42657122 42657315 + 1.5 NA TTS (NM_001355224) TTS (NM_001355224) -1205 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 217.5-13 chr14 43860877 43861167 + 1.5 NA Intergenic Intergenic 646261 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 233.5-2 chr1 241671514 241671759 + 1.5 NA intron (NM_001367482, intron 3 of 27) intron (NM_001367482, intron 3 of 27) 19355 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 781 chr2 6062248 6063119 + 1.5 NA Intergenic Intergenic 80705 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 340-21 chr2 46921262 46921783 + 1.5 NA intron (NM_001288953, intron 2 of 20) intron (NM_001288953, intron 2 of 20) -5410 NM_001171507 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 242-6 chr12 74845264 74845594 + 1.5 NA Intergenic Intergenic 307594 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 114.5-12 chr5 50576365 50576499 + 1.5 NA Intergenic Intergenic -89499 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 510-17 chr5 28020097 28020674 + 1.5 NA Intergenic Intergenic 267280 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 178-8 chr14 48227175 48227341 + 1.5 NA Intergenic Intergenic -432244 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 277-9 chr11 102711671 102711879 + 1.5 NA TTS (NM_002424) TTS (NM_002424) -6006 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 620-12 chr3 109643018 109643625 + 1.5 NA Intergenic MamGypLTR1c|LTR|Gypsy 40493 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 429.5-22 chr9 35345514 35345830 + 1.5 NA intron (NM_001371188, intron 1 of 29) intron (NM_001371188, intron 1 of 29) 3776 NM_001371187 186-6 chr15 27594785 27594978 + 1.5 NA Intergenic Intergenic -433562 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 223.5-26 chr3 108625289 108625589 + 1.5 NA intron (NM_014648, intron 6 of 32) intron (NM_014648, intron 6 of 32) 35717 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 360-26 chr20 33317037 33317502 + 1.5 NA Intergenic L2c|LINE|L2 34055 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 260.5-12 chr15 61340737 61340943 + 1.5 NA Intergenic L2a|LINE|L2 -111538 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 480-26 chr4 62299009 62299518 + 1.5 NA Intergenic L1MD2|LINE|L1 -137498 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 330.5-22 chr2 134279386 134279762 + 1.5 NA intron (NM_001371457, intron 3 of 16) intron (NM_001371457, intron 3 of 16) 25502 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 660.5-3 chr14 40676494 40676934 + 1.5 NA Intergenic L1PB1|LINE|L1 -277997 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 242-2 chr1 218422110 218422356 + 1.5 NA intron (NR_138148, intron 2 of 6) AluJb|SINE|Alu -15400 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 285-23 chr5 138417768 138418123 + 1.5 NA intron (NM_016604, intron 13 of 23) intron (NM_016604, intron 13 of 23) -21112 NR_073448 51308 Hs.416090 NM_016606 ENSG00000132563 REEP2 C5orf19|SGC32445|SPG72|Yip2d receptor accessory protein 2 protein-coding 316-30 chr4 58272738 58273046 + 1.5 NA Intergenic L3b|LINE|CR1 263436 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 216.5-27 chr22 24898544 24898728 + 1.5 NA intron (NM_001098498, intron 18 of 23) intron (NM_001098498, intron 18 of 23) 48059 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 245.5-7 chr12 89698264 89698566 + 1.5 NA intron (NM_001366520, intron 1 of 21) L1ME1|LINE|L1 10423 NM_001366525 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 407-24 chr5 128113148 128113633 + 1.5 NA intron (NM_001046, intron 2 of 26) intron (NM_001046, intron 2 of 26) 29624 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 233-28 chr8 78407313 78407482 + 1.5 NA Intergenic Intergenic -108943 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 368-46 chrX 88635876 88636189 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -111193 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 233.5-9 chr15 65339236 65339546 + 1.5 NA intron (NM_004884, intron 2 of 13) AluJo|SINE|Alu 34714 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 218.5-36 chr9 34060012 34060229 + 1.5 NA Intergenic AluJr|SINE|Alu -10921 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 160.5-14 chr22 27054936 27055079 + 1.5 NA intron (NM_001318329, intron 1 of 1) MIR3|SINE|MIR 5511 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 191.5-15 chr21 25583544 25583758 + 1.5 NA promoter-TSS (NR_024092) promoter-TSS (NR_024092) -427 NR_024092 282566 Hs.384586 NR_024092 ENSG00000260583 LINC00515 C21orf71|PRED21 long intergenic non-protein coding RNA 515 ncRNA 229-28 chr6 126126643 126126890 + 1.5 NA Intergenic Intergenic 140226 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 373.5-23 chr6 24621888 24622378 + 1.5 NA intron (NM_001350409, intron 1 of 21) intron (NM_001350409, intron 1 of 21) 23888 NM_001168376 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 281.5-18 chr3 24584386 24584665 + 1.5 NA Intergenic Intergenic -88817 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 453-31 chr8 122491785 122492246 + 1.5 NA intron (NR_131202, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 76629 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 518-3 chr1 165575478 165575959 + 1.5 NA intron (NR_026744, intron 1 of 6) intron (NR_026744, intron 1 of 6) 6437 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 245-20 chr19 53928155 53928410 + 1.5 NA intron (NM_031896, intron 3 of 4) AluSz|SINE|Alu 15545 NM_031896 59284 Hs.631597 NM_031896 ENSG00000105605 CACNG7 - calcium voltage-gated channel auxiliary subunit gamma 7 protein-coding 205.5-29 chr7 7307521 7307766 + 1.5 NA Intergenic Intergenic 52489 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 354-6 chr12 19449662 19449961 + 1.5 NA intron (NM_001267043, intron 1 of 8) intron (NM_001267043, intron 1 of 8) 9212 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 557-7 chr12 49419241 49419788 + 1.5 NA intron (NM_001293285, intron 3 of 14) intron (NM_001293285, intron 3 of 14) 30340 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 266.5-8 chr15 98785437 98785781 + 1.5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 1183 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 136-7 chr3 118428994 118429085 + 1.5 NA Intergenic L1MC4a|LINE|L1 -212729 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 254.5-45 chr8 119661678 119662002 + 1.5 NA intron (NM_001330600, intron 1 of 25) L1MA8|LINE|L1 11550 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 298-22 chr5 64117169 64117652 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -48433 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 173.5-8 chr12 39174022 39174163 + 1.5 NA Intergenic Intergenic -268501 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 234-21 chr5 39062301 39062573 + 1.5 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 11962 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 173-10 chr2 152958811 152959041 + 1.5 NA Intergenic MIR|SINE|MIR 240289 NR_146429 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 210.5-25 chr6 46889525 46889735 + 1.5 NA intron (NM_001098518, intron 3 of 20) intron (NM_001098518, intron 3 of 20) -13841 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 579-6 chr17 75329265 75329769 + 1.5 NA intron (NM_002086, intron 3 of 5) intron (NM_002086, intron 3 of 5) -40068 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 238-30 chr5 12907525 12907814 + 1.5 NA intron (NR_147005, intron 3 of 4) intron (NR_147005, intron 3 of 4) 125217 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 159.5-24 chr5 26907567 26907743 + 1.5 NA intron (NM_016279, intron 3 of 11) intron (NM_016279, intron 3 of 11) 130931 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 706.5 chr20 2563564 2564254 + 1.5 NA intron (NM_080751, intron 4 of 19) AluJo|SINE|Alu 27302 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 399.5-13 chr20 45193792 45194260 + 1.5 NA Intergenic Intergenic -13007 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 397.5-33 chr8 87124557 87125001 + 1.5 NA intron (NM_173538, intron 4 of 10) L1M3|LINE|L1 258364 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 271.5-14 chr13 62445918 62446192 + 1.5 NA Intergenic AluSc|SINE|Alu 122398 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 626.5-7 chr22 35210893 35211450 + 1.5 NA intron (NR_126356, intron 1 of 5) L2|LINE|L2 19885 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 263-23 chr7 2972290 2972627 + 1.5 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 71409 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 315.5-28 chr4 71754762 71755088 + 1.5 NA intron (NM_000583, intron 9 of 12) MER58B|DNA|hAT-Charlie 29154 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 200.5-2 chr1 217339120 217339328 + 1.5 NA Intergenic L3|LINE|CR1 -201522 NM_001134285 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 184.5-11 chr16 77773992 77774157 + 1.5 NA Intergenic Charlie29a|DNA|hAT-Charlie -14490 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 228.5-28 chr4 142685668 142685953 + 1.5 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 160725 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 274.5-10 chr14 53328760 53329100 + 1.5 NA Intergenic Intergenic 175576 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 201.5-11 chr14 53329928 53330176 + 1.5 NA Intergenic Intergenic 176698 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 423-3 chr12 3347697 3348152 + 1.5 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 18198 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 240-50 chrX 63040564 63040863 + 1.5 NA Intergenic PRIMA41-int|LTR|ERV1 310619 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 177-14 chr4 124469485 124469622 + 1.5 NA Intergenic Intergenic 88881 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 598-2 chr13 62259643 62260260 + 1.5 NA Intergenic L1MA4|LINE|L1 47669 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 279.5-18 chr7 28103856 28104166 + 1.5 NA intron (NM_175061, intron 1 of 4) L2a|LINE|L2 -76446 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 349.5-22 chr4 43712032 43712352 + 1.5 NA Intergenic Intergenic -219649 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 226.5-27 chr9 28468324 28468625 + 1.5 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 250831 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 307-29 chr4 103342806 103343116 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -82081 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 197-19 chr3 192251366 192251537 + 1.5 NA intron (NR_046596, intron 1 of 4) L1ME3|LINE|L1 12821 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 162.5 chr1 26593970 26594091 + 1.5 NA Intergenic HY3|scRNA|scRNA 39488 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 121.5-6 chr16 88721292 88721437 + 1.5 NA exon (NM_001142864, exon 39 of 51) exon (NM_001142864, exon 39 of 51) -5027 NR_039873 100616167 NR_039873 ENSG00000284585 MIR4722 - microRNA 4722 ncRNA 290-37 chr9 121867732 121868121 + 1.5 NA intron (NM_001139442, intron 7 of 8) intron (NM_001139442, intron 7 of 8) 125141 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 137.5-16 chr17 78709746 78709904 + 1.5 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 7207 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 516-7 chr12 14028055 14028500 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie -47921 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 309-4 chr10 92000805 92001113 + 1.5 NA intron (NM_003972, intron 25 of 37) L1MEc|LINE|L1 77189 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 194.5-24 chr5 90332316 90332512 + 1.5 NA Intergenic L1M2|LINE|L1 -42343 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 465.5-21 chr7 83805528 83806120 + 1.5 NA Intergenic L1ME3G|LINE|L1 -156685 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 173-14 chr5 20583334 20583522 + 1.5 NA Intergenic L1MB3|LINE|L1 -7715 NM_001291956 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 168.5-24 chr5 42651403 42651600 + 1.5 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 85637 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 255.5-5 chr10 99077721 99077891 + 1.5 NA intron (NM_021828, intron 3 of 11) L1M3de|LINE|L1 -153238 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 431-19 chr22 26078811 26079498 + 1.5 NA Intergenic Intergenic -90308 NM_001184774 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 115.5-14 chr3 134953568 134953701 + 1.5 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 158374 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 361.5-10 chr17 55228142 55228668 + 1.5 NA Intergenic Intergenic -36555 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 404.5-6 chr11 125335587 125335937 + 1.5 NA intron (NM_022062, intron 3 of 12) AluJr|SINE|Alu -159452 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 270-34 chr8 131613171 131613440 + 1.5 NA Intergenic Intergenic -290788 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 304-29 chr4 179436413 179436849 + 1.5 NA Intergenic Intergenic -1528695 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 243.5-12 chr14 46565053 46565403 + 1.5 NA Intergenic Intergenic 86553 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 562.5-5 chr10 71238280 71238717 + 1.5 NA intron (NM_001244889, intron 1 of 15) AluSx|SINE|Alu -20270 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 335-44 chr4 152635774 152636205 + 1.5 NA intron (NM_152680, intron 6 of 6) intron (NM_152680, intron 6 of 6) 44008 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 410.5-13 chr20 42387707 42388222 + 1.5 NA intron (NM_133170, intron 9 of 31) AluSg|SINE|Alu -297519 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 192-5 chr10 26451997 26452166 + 1.5 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 13740 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 527.5-9 chr21 30769611 30770020 + 1.5 NA Intergenic Intergenic -14387 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 212-2 chr10 86499902 86500137 + 1.5 NA exon (NM_015045, exon 3 of 19) exon (NM_015045, exon 3 of 19) 21765 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 556.5-10 chr4 27615100 27615526 + 1.5 NA Intergenic Intergenic 397834 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 273-15 chr18 12925433 12925794 + 1.5 NA Intergenic AluYm1|SINE|Alu -22371 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 479-9 chr2 4640422 4640818 + 1.5 NA intron (NR_034134, intron 3 of 4) intron (NR_034134, intron 3 of 4) 15602 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 276.5 chr1 22327009 22327269 + 1.5 NA Intergenic Intergenic 60900 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 380.5-2 chr1 218189069 218189423 + 1.5 NA Intergenic AluSz6|SINE|Alu -96047 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 574-14 chr4 16116144 16116783 + 1.5 NA Intergenic Intergenic -32440 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 250.5-31 chr5 56988744 56989104 + 1.5 NA Intergenic Intergenic -36794 NM_001297599 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 336-49 chr9 104014834 104015142 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie 15279 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 402-28 chr6 11972284 11972704 + 1.5 NA Intergenic Intergenic 28750 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 371.5-17 chr2 154192809 154193111 + 1.5 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 248566 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 190.5-9 chr18 11705291 11705456 + 1.5 NA intron (NM_182978, intron 1 of 11) L1MA10|LINE|L1 16109 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 320.5-32 chr7 16070697 16070998 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -139639 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 311-7 chr10 77943253 77943536 + 1.5 NA Intergenic Intergenic 16582 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 279.5-8 chr19 44542777 44543045 + 1.5 NA non-coding (NR_027754, exon 5 of 8) non-coding (NR_027754, exon 5 of 8) -13236 NM_001102600 125931 Hs.689632 NM_198444 ENSG00000273777 CEACAM20 UNQ9366 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding 362.5-29 chr7 11686334 11686710 + 1.5 NA intron (NM_015204, intron 1 of 26) L1PA16|LINE|L1 145676 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 535-9 chr16 61950646 61951129 + 1.5 NA intron (NM_001796, intron 2 of 11) L1PA14|LINE|L1 85551 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 367.5-3 chr1 96744643 96744979 + 1.5 NA intron (NM_001300990, intron 2 of 12) intron (NM_001300990, intron 2 of 12) 22173 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 231.5-19 chr3 42089296 42089590 + 1.5 NA intron (NM_001349245, intron 1 of 15) L2a|LINE|L2 -1914 NM_001349246 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 191.5-10 chr16 65829540 65829782 + 1.5 NA Intergenic MIRb|SINE|MIR -253361 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 173.5-5 chr10 32081053 32081222 + 1.5 NA Intergenic AluSz|SINE|Alu -24712 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 268.5-2 chr10 83431538 83431826 + 1.5 NA Intergenic Intergenic 245407 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 181.5-4 chr11 69820574 69820722 + 1.5 NA Intergenic Intergenic -1232 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 402-4 chr10 21170446 21170822 + 1.5 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -3356 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 238.5-6 chr10 45571091 45571366 + 1.5 NA intron (NM_145021, intron 1 of 6) LTR7|LTR|ERV1 23678 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 458-3 chr1 241329044 241329434 + 1.5 NA intron (NM_001350116, intron 1 of 16) intron (NM_001350116, intron 1 of 16) 26587 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 251-11 chr15 64156928 64157162 + 1.5 NA non-coding (NR_073534, exon 7 of 7) non-coding (NR_073534, exon 7 of 7) 5314 NR_073534 79856 Hs.744250 NM_024798 ENSG00000157734 SNX22 - sorting nexin 22 protein-coding 297-6 chr10 67920134 67920415 + 1.5 NA Intergenic Intergenic 28872 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 425.5-22 chr9 20702764 20703171 + 1.5 NA intron (NM_017794, intron 3 of 45) AluSg4|SINE|Alu -13138 NR_030166 574444 NR_030166 ENSG00000207609 MIR491 MIRN491|hsa-mir-491|mir-491 microRNA 491 ncRNA 306.5-13 chr14 61628032 61628373 + 1.5 NA intron (NR_039985, intron 1 of 2) MamTip3|DNA|hAT-Tip100 -57549 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 599-12 chr3 19647142 19647570 + 1.5 NA Intergenic Intergenic 286861 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 244.5-32 chr4 120154356 120154583 + 1.5 NA Intergenic Charlie1b|DNA|hAT-Charlie -87621 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 217.5-3 chr10 58064065 58064309 + 1.5 NA Intergenic Intergenic 203707 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 417.5-26 chr8 133521299 133521981 + 1.5 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 50247 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 440-29 chr4 141794679 141795317 + 1.5 NA Intergenic Intergenic 158415 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 392-5 chr1 183622559 183622911 + 1.5 NA 3' UTR (NM_001270439, exon 4 of 4) 3' UTR (NM_001270439, exon 4 of 4) 13048 NM_005717 10092 Hs.518609 NM_005717 ENSG00000162704 ARPC5 ARC16|dJ127C7.3|p16-Arc actin related protein 2/3 complex subunit 5 protein-coding 472-25 chr8 142491571 142491935 + 1.5 NA intron (NM_001702, intron 17 of 30) intron (NM_001702, intron 17 of 30) 42104 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 187.5-13 chr2 153002120 153002286 + 1.5 NA Intergenic L1PA11|LINE|L1 283566 NR_146429 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 141-6 chr4 163832509 163832603 + 1.5 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -219022 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 229-27 chr6 91499142 91499416 + 1.5 NA Intergenic Intergenic -22381 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 341-37 chr9 34605154 34605492 + 1.5 NA Intergenic Intergenic 6774 NM_148178 138716 Hs.15961 NM_148178 ENSG00000164967 RPP25L C9orf23|bA296L22.5 ribonuclease P/MRP subunit p25 like protein-coding 433.5-23 chr3 196080165 196080670 + 1.5 NA intron (NM_001313966, intron 1 of 16) AluSx|SINE|Alu 1673 NM_001128148 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 261.5-8 chr12 50550066 50550482 + 1.5 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 45289 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 384.5-5 chr10 9575000 9575461 + 1.5 NA Intergenic Intergenic -279637 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 235.5-18 chr3 36490564 36490835 + 1.5 NA intron (NM_001292049, intron 3 of 8) intron (NM_001292049, intron 3 of 8) 110212 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 390.5 chr1 79677238 79677564 + 1.5 NA Intergenic L1PB1|LINE|L1 -670671 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 142-7 chr20 43792134 43792326 + 1.5 NA Intergenic Intergenic -65228 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 347-5 chr12 118801396 118801779 + 1.5 NA Intergenic L1MB7|LINE|L1 31949 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 141-3 chr2 30392845 30393012 + 1.5 NA Intergenic MIRb|SINE|MIR 46282 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 297-11 chr17 76436705 76437027 + 1.5 NA intron (NM_022066, intron 1 of 17) AluSq|SINE|Alu 16286 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 137-2 chr2 14260915 14261077 + 1.5 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 139962 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 177-8 chr17 62966978 62967192 + 1.5 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 850 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 330.5-12 chr11 65603449 65603809 + 1.5 NA intron (NM_002419, intron 8 of 9) intron (NM_002419, intron 8 of 9) -7633 NM_033455 10089 Hs.175218 NM_005714 ENSG00000173338 KCNK7 K2p7.1|TWIK3 potassium two pore domain channel subfamily K member 7 protein-coding 478-6 chr11 40376604 40377195 + 1.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -83769 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 464.5-3 chr1 76451612 76452022 + 1.5 NA intron (NM_001349109, intron 3 of 3) L1PB1|LINE|L1 327450 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 180.5 chr1 198103369 198103565 + 1.5 NA Intergenic Intergenic -53531 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 234-3 chr1 211391572 211391891 + 1.5 NA intron (NR_026761, intron 2 of 5) intron (NR_026761, intron 2 of 5) 8976 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 305.5-23 chr4 18708488 18708724 + 1.5 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -686731 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 245.5-14 chr17 58697182 58697353 + 1.5 NA intron (NM_058216, intron 3 of 8) AluSg|SINE|Alu 4665 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 120.5-8 chr17 56319921 56320026 + 1.5 NA intron (NM_001370326, intron 3 of 20) MIRb|SINE|MIR 166498 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 246-6 chr14 69705226 69705446 + 1.5 NA intron (NM_014734, intron 4 of 5) AluSx|SINE|Alu -61806 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 375-10 chr14 61716944 61717553 + 1.5 NA intron (NR_144368, intron 1 of 2) intron (NR_144368, intron 1 of 2) 19626 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 316-37 chr6 41719347 41719748 + 1.5 NA intron (NM_001167827, intron 1 of 8) MIRc|SINE|MIR 14063 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 263-5 chr11 15661396 15661571 + 1.5 NA intron (NM_001293172, intron 1 of 2) MIR3|SINE|MIR 17598 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 402-5 chr10 88004909 88005331 + 1.5 NA Intergenic AluJb|SINE|Alu 141495 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 201-20 chr6 76343094 76343331 + 1.5 NA Intergenic L1MEd|LINE|L1 250411 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 507.5-17 chrX 56138718 56139092 + 1.5 NA intron (NM_001324104, intron 2 of 6) L1PA15|LINE|L1 -93451 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 256-10 chr15 57993492 57993741 + 1.5 NA intron (NM_170696, intron 5 of 11) intron (NM_170696, intron 5 of 11) 20407 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 328-30 chr6 132445318 132445579 + 1.5 NA TTS (NM_001326578) TTS (NM_001326578) -43973 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 403.5-13 chr3 6088444 6088872 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 716791 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 168.5-19 chr3 124769371 124769487 + 1.5 NA intron (NM_001354766, intron 10 of 13) intron (NM_001354766, intron 10 of 13) 36990 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 188-16 chr6 132759221 132759408 + 1.5 NA intron (NM_078488, intron 1 of 7) AluSx1|SINE|Alu -1306 NR_110146 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 382-24 chr2 81504036 81504388 + 1.5 NA Intergenic Intergenic -37266 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 227-10 chr11 45216952 45217135 + 1.5 NA intron (NM_001256695, intron 5 of 7) intron (NM_001256695, intron 5 of 7) 69298 NM_020826 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 427-26 chr5 124232182 124232683 + 1.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 206088 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 164-4 chr13 29926438 29926605 + 1.5 NA non-coding (NR_047501, exon 1 of 2) non-coding (NR_047501, exon 1 of 2) 130 NR_047501 100861573 Hs.585619 NR_047501 ENSG00000224405 LINC00572 - long intergenic non-protein coding RNA 572 ncRNA 156.5-27 chr8 113148392 113148561 + 1.5 NA intron (NM_001363185, intron 4 of 66) L2c|LINE|L2 228676 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 398-15 chr2 19269655 19270098 + 1.5 NA Intergenic AluSq2|SINE|Alu -78553 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 226-9 chr15 92660310 92660530 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -4645 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 193.5-15 chr17 52180960 52181132 + 1.5 NA Intergenic L1MC5|LINE|L1 -21029 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 243-34 chr8 66064440 66064652 + 1.5 NA intron (NR_146171, intron 4 of 6) intron (NR_146171, intron 4 of 6) 42993 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 297-30 chr7 79493359 79493759 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR 39599 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 380.5-24 chr5 162223192 162223626 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 155767 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 227.5-32 chr8 24902276 24902632 + 1.5 NA Intergenic Intergenic -11307 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 170-6 chr12 72390361 72390484 + 1.5 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -116913 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 352-32 chr4 128847382 128847726 + 1.5 NA intron (NM_001287437, intron 4 of 10) intron (NM_001287437, intron 4 of 10) 35710 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 138.5-5 chr11 78630029 78630183 + 1.5 NA Intergenic L1M1|LINE|L1 -55242 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 278.5-20 chr5 44803191 44803417 + 1.5 NA intron (NR_109863, intron 1 of 3) MIRb|SINE|MIR 5489 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 181 chr1 69523830 69524074 + 1.5 NA Intergenic MER21C|LTR|ERVL -43382 NM_001366836 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 641-6 chr20 31055199 31055939 + 1.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202095 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 178.5-19 chr5 176581711 176581893 + 1.5 NA intron (NM_017675, intron 17 of 31) MIR|SINE|MIR 28354 NM_052899 114787 Hs.150549 NM_052899 ENSG00000169258 GPRIN1 GRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding 241.5-8 chr11 85340774 85340957 + 1.5 NA intron (NM_001142699, intron 3 of 27) L1MC4a|LINE|L1 286405 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 340 chr1 47334649 47334875 + 1.5 NA intron (NM_001136140, intron 1 of 4) intron (NM_001136140, intron 1 of 4) 972 NR_046394 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 237.5-12 chr2 171781506 171781896 + 1.5 NA Intergenic L1ME3B|LINE|L1 93946 NM_001271787 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 228-13 chr5 98936108 98936351 + 1.5 NA intron (NR_151718, intron 1 of 3) L1ME3|LINE|L1 -6515 NR_157079 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 489-27 chr5 111828425 111829001 + 1.5 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -70495 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 410.5-2 chr14 59980792 59981107 + 1.5 NA intron (NR_075071, intron 15 of 32) L1MEh|LINE|L1 61236 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 369.5-20 chr4 173645469 173645796 + 1.5 NA Intergenic L1MA5A|LINE|L1 115174 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 351-17 chr17 81665091 81665498 + 1.5 NA exon (NM_001039842, exon 2 of 2) exon (NM_001039842, exon 2 of 2) 1311 NM_001304995 339229 Hs.405942 NM_001039842 ENSG00000204237 OXLD1 C17orf90 oxidoreductase like domain containing 1 protein-coding 340.5-10 chr14 81216218 81216538 + 1.5 NA intron (NM_001278940, intron 2 of 9) intron (NM_001278940, intron 2 of 9) 4581 NM_015859 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 138 chr11 109523169 109523295 + 1.5 NA Intergenic FLAM_C|SINE|Alu 101042 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 291-33 chr9 31754763 31754990 + 1.5 NA Intergenic L1MC5a|LINE|L1 -373386 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 143.5-25 chr6 48126856 48126997 + 1.5 NA Intergenic Intergenic -58237 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 450.5-15 chr6 131691191 131691695 + 1.5 NA intron (NR_133007, intron 14 of 23) AluSx1|SINE|Alu 9958 NM_030908 79541 Hs.486488 NM_030908 ENSG00000180658 OR2A4 OR2A10 olfactory receptor family 2 subfamily A member 4 protein-coding 197.5-33 chr5 167634323 167634594 + 1.5 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 60799 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 187-3 chr10 48839538 48839689 + 1.5 NA intron (NM_020945, intron 39 of 61) intron (NM_020945, intron 39 of 61) 74622 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 251-31 chr7 6356621 6356934 + 1.5 NA Intergenic AluSx1|SINE|Alu -7810 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 393.5-17 chr4 102055688 102056069 + 1.5 NA intron (NM_017935, intron 11 of 16) intron (NM_017935, intron 11 of 16) 242036 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 221-4 chr1 66954351 66954597 + 1.5 NA intron (NM_001077700, intron 4 of 13) intron (NM_001077700, intron 4 of 13) 24218 NM_001077704 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 523-3 chr1 79389434 79389927 + 1.5 NA Intergenic L1M4|LINE|L1 -382950 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 295.5-33 chr9 98930296 98930630 + 1.5 NA Intergenic Intergenic -13444 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 583-17 chr8 134690384 134690892 + 1.5 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 5917 NM_001167583 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 298.5-16 chr3 22334229 22334540 + 1.5 NA Intergenic L1MEg|LINE|L1 377245 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 429-36 chrX 50155572 50156105 + 1.5 NA Intergenic L1ME3G|LINE|L1 44534 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 604.5-8 chr21 17509382 17509830 + 1.5 NA Intergenic Intergenic -3300 NM_001207066 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 439.5-5 chr11 26606987 26607363 + 1.5 NA intron (NM_031418, intron 17 of 26) L1P3b|LINE|L1 -34912 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 222-20 chr3 164553978 164554240 + 1.5 NA Intergenic Intergenic 277371 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 332.5 chr1 113896021 113896524 + 1.5 NA exon (NM_001308312, exon 5 of 7) exon (NM_001308312, exon 5 of 7) -8347 NM_001319947 64858 Hs.591412 NM_022836 ENSG00000118655 DCLRE1B APOLLO|SNM1B|SNMIB DNA cross-link repair 1B protein-coding 275 chr1 34034237 34034573 + 1.5 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 130869 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 491.5-16 chr4 124859711 124860104 + 1.5 NA Intergenic Intergenic -147175 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 230-31 chr6 7490260 7490552 + 1.5 NA Intergenic Intergenic -51265 NM_004415 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 257.5-44 chr8 33617134 33617358 + 1.5 NA Intergenic AluSz6|SINE|Alu -17140 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 220-13 chr17 27593383 27593590 + 1.5 NA intron (NM_014238, intron 9 of 20) intron (NM_014238, intron 9 of 20) -37702 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 191-9 chr3 157195722 157195849 + 1.5 NA Intergenic L1PREC2|LINE|L1 -35025 NM_001308185 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 320.5-7 chr14 61471580 61472005 + 1.5 NA intron (NM_006255, intron 9 of 13) MER20|DNA|hAT-Charlie 98402 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 277-18 chr15 63478735 63479116 + 1.5 NA Intergenic L1ME4a|LINE|L1 -25586 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 313-15 chr17 53763792 53764040 + 1.5 NA Intergenic L1MB1|LINE|L1 -59011 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 350.5-9 chr22 42926580 42926882 + 1.5 NA intron (NM_001184970, intron 1 of 10) FAM|SINE|Alu 20310 NM_007229 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 138-8 chr5 172785899 172786011 + 1.5 NA Intergenic Intergenic -14760 NM_004417 1843 Hs.171695 NM_004417 ENSG00000120129 DUSP1 CL100|HVH1|MKP-1|MKP1|PTPN10 dual specificity phosphatase 1 protein-coding 202-26 chr8 84546556 84546720 + 1.5 NA intron (NM_001354308, intron 3 of 9) L1MD|LINE|L1 131154 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 133.5-21 chr8 32735055 32735209 + 1.5 NA intron (NM_001322201, intron 4 of 8) intron (NM_001322201, intron 4 of 8) 13297 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 172-2 chr10 69162982 69163169 + 1.5 NA intron (NM_001035260, intron 6 of 7) L1ME4b|LINE|L1 -17159 NR_136627 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 308.5-14 chr17 34069926 34070278 + 1.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 86704 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 380.5-18 chr22 33481984 33482630 + 1.5 NA intron (NM_133642, intron 6 of 14) (CTTTTTC)n|Simple_repeat|Simple_repeat -45638 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 416.5 chr1 16017339 16017639 + 1.5 NA intron (NM_001349689, intron 1 of 2) intron (NM_001349689, intron 1 of 2) 1301 NM_001349683 27129 Hs.502612 NM_014424 ENSG00000173641 HSPB7 cvHSP heat shock protein family B (small) member 7 protein-coding 159.5-9 chr12 9164585 9164756 + 1.5 NA intron (NM_002864, intron 19 of 35) intron (NM_002864, intron 19 of 35) 43725 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 288.5-18 chr15 77381485 77381771 + 1.5 NA intron (NM_024776, intron 1 of 7) MamTip2|DNA|hAT-Tip100 38476 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 221.5-5 chr10 64719331 64719535 + 1.5 NA Intergenic L2a|LINE|L2 -106095 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 278-11 chr15 97513295 97513583 + 1.5 NA intron (NR_120324, intron 2 of 4) L1PA8|LINE|L1 8372 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 260.5-16 chr18 73611531 73611768 + 1.5 NA Intergenic Intergenic 286708 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 137.5-22 chr5 165779920 165780030 + 1.5 NA Intergenic Intergenic 1146395 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 363.5-17 chr20 35025932 35026324 + 1.5 NA intron (NM_015638, intron 8 of 18) L1MB8|LINE|L1 -35656 NR_039912 100616134 NR_039912 ENSG00000283441 MIR499B MIR499A|hsa-mir-499b microRNA 499b ncRNA 241-14 chr3 197107115 197107371 + 1.5 NA intron (NM_001366216, intron 12 of 23) intron (NM_001366216, intron 12 of 23) 76629 NR_158767 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 244.5-33 chr4 122282957 122283244 + 1.5 NA intron (NM_015312, intron 50 of 83) L1ME3D|LINE|L1 -95911 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 207-23 chr6 10671274 10671451 + 1.5 NA TTS (NR_148870) TTS (NR_148870) 23247 NM_001145020 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 453.5-5 chr10 108774771 108775163 + 1.5 NA Intergenic L1MEf|LINE|L1 -705674 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 280.5-10 chr15 94568694 94568926 + 1.5 NA Intergenic MLT2C1|LTR|ERVL 212880 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 261-18 chr4 76800562 76800951 + 1.5 NA Intergenic L1M1|LINE|L1 97388 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 301-35 chr8 90371357 90371746 + 1.5 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 150063 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 329-16 chr17 76039393 76039828 + 1.5 NA non-coding (NR_048541, exon 15 of 15) non-coding (NR_048541, exon 15 of 15) -12304 NM_001320747 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 280-23 chr22 47315986 47316308 + 1.5 NA Intergenic L1ME1|LINE|L1 -29424 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 312-21 chr4 40299201 40299606 + 1.5 NA Intergenic AluJo|SINE|Alu -7782 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 205.5-19 chr5 27567194 27567403 + 1.5 NA Intergenic Intergenic 95006 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 235-16 chr16 89483992 89484316 + 1.5 NA intron (NM_001256182, intron 1 of 13) intron (NM_001256182, intron 1 of 13) 6407 NM_013275 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 394.5-16 chr20 56532265 56532714 + 1.5 NA promoter-TSS (NM_001013646) promoter-TSS (NM_001013646) -757 NM_001013646 388799 Hs.287759 NM_001013646 ENSG00000213714 FAM209B C20orf107|dJ1153D9.4 family with sequence similarity 209 member B protein-coding 217.5-11 chr12 24746241 24746475 + 1.5 NA Intergenic Intergenic 155864 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 275.5-4 chr1 159138303 159138750 + 1.5 NA Intergenic L2a|LINE|L2 -33089 NM_001346510 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 292.5-25 chr5 129323489 129323807 + 1.5 NA Intergenic L1M2b|LINE|L1 73499 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 240.5-20 chr5 135282777 135282941 + 1.5 NA intron (NR_161235, intron 3 of 5) L1PA16|LINE|L1 -34682 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 171.5-13 chr2 213924898 213925052 + 1.5 NA intron (NR_047660, intron 10 of 14) L1MEd|LINE|L1 166908 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 131.5-12 chr15 52048908 52049018 + 1.5 NA intron (NM_002748, intron 2 of 5) MIRc|SINE|MIR 29744 NM_002748 5597 Hs.411847 NM_002748 ENSG00000069956 MAPK6 ERK3|HsT17250|PRKM6|p97MAPK mitogen-activated protein kinase 6 protein-coding 350.5-5 chr15 59915692 59915992 + 1.5 NA Intergenic AluSz6|SINE|Alu -88469 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 216.5 chr1 67196711 67196887 + 1.5 NA intron (NM_144701, intron 4 of 10) intron (NM_144701, intron 4 of 10) 30345 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 378-29 chr7 40400417 40400763 + 1.5 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 265614 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 409.5-15 chr2 200122147 200122499 + 1.5 NA Intergenic Intergenic -166832 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 345.5-25 chr4 30831642 30831872 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 111388 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 182.5-2 chr1 232668463 232668637 + 1.5 NA Intergenic Intergenic -49521 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 171 chr12 13551949 13552172 + 1.5 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -175315 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 228-16 chr7 73505396 73505557 + 1.5 NA intron (NM_001370402, intron 3 of 18) MER5A1|DNA|hAT-Charlie 16817 NM_001370402 9031 Hs.743372 NM_023005 ENSG00000009954 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain 1B protein-coding 200-5 chr10 128188589 128188743 + 1.5 NA Intergenic Intergenic -62243 NM_002417 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 206.5-43 chrX 37078700 37078881 + 1.5 NA Intergenic Intergenic -34998 NM_001271682 441490 NM_001271682 FTH1P18 FTHL18 ferritin heavy chain 1 pseudogene 18 protein-coding 221-11 chr2 33453371 33453667 + 1.5 NA intron (NM_170672, intron 2 of 18) MLT1F|LTR|ERVL-MaLR -4536 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 395.5-14 chr18 79306338 79306638 + 1.5 NA intron (NR_148360, intron 15 of 31) intron (NR_148360, intron 15 of 31) -89442 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 280.5-22 chr3 175663105 175663548 + 1.5 NA intron (NM_207015, intron 11 of 13) L1MA4|LINE|L1 113007 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 283.5-7 chr11 36134126 36134453 + 1.5 NA intron (NM_001304263, intron 3 of 4) Tigger20a|DNA|TcMar-Tigger -56388 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 290-17 chr2 66557507 66557911 + 1.5 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -16321 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 431.5-10 chr2 28324891 28325312 + 1.5 NA intron (NR_137438, intron 12 of 12) MER112|DNA|hAT-Charlie -14642 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 258-14 chr2 166246018 166246284 + 1.5 NA intron (NM_001365536, intron 18 of 26) intron (NM_001365536, intron 18 of 26) -96990 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 312.5-2 chr10 17776194 17776507 + 1.5 NA intron (NM_001098844, intron 3 of 3) intron (NM_001098844, intron 3 of 3) 24149 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 206-2 chr1 244552760 244552986 + 1.5 NA intron (NM_001130957, intron 9 of 21) intron (NM_001130957, intron 9 of 21) 91502 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 321.5-16 chr15 62036470 62036986 + 1.5 NA intron (NM_001018088, intron 3 of 81) intron (NM_001018088, intron 3 of 81) 23719 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 308-12 chr16 3893171 3893476 + 1.5 NA Intergenic AluSx1|SINE|Alu -12610 NM_004380 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 359.5-27 chr4 34480709 34481150 + 1.5 NA Intergenic Intergenic -211182 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 232.5-14 chr12 115701106 115701345 + 1.5 NA Intergenic Intergenic 447429 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 146 chr10 39094992 39095133 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 398466 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 240.5-14 chr3 89791271 89791489 + 1.5 NA Intergenic Intergenic 683759 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 305-3 chr1 210857790 210858208 + 1.5 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 275375 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 312-17 chr22 22942253 22942643 + 1.5 NA Intergenic Intergenic 54632 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 274-35 chr8 15453231 15453440 + 1.5 NA Intergenic Intergenic -86752 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 443-10 chr14 47348592 47348966 + 1.5 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 -5533 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 311.5-23 chr2 68093934 68094277 + 1.5 NA Intergenic Intergenic -31101 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 302-23 chr4 106585927 106586241 + 1.5 NA Intergenic Intergenic 152460 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 171-14 chr5 25094955 25095128 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 95615 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 330-27 chr20 37233591 37233903 + 1.5 NA intron (NM_001135771, intron 13 of 16) intron (NM_001135771, intron 13 of 16) 23161 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 437.5-12 chr7 3492847 3493223 + 1.5 NA intron (NM_152744, intron 1 of 44) AluY|SINE|Alu 191783 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 246-18 chr9 29869319 29869552 + 1.5 NA Intergenic L1MEc|LINE|L1 539019 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 441.5-17 chr7 107870673 107871128 + 1.5 NA Intergenic AluJo|SINE|Alu -20207 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 278.5-7 chr17 61946104 61946366 + 1.5 NA 3' UTR (NM_005121, exon 30 of 30) 3' UTR (NM_005121, exon 30 of 30) -18253 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 315.5-14 chr18 46562491 46562903 + 1.5 NA intron (NM_144612, intron 18 of 39) intron (NM_144612, intron 18 of 39) -3385 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 267.5-23 chr7 50946138 50946515 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR -152873 NM_001001555 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 376.5-16 chr2 185789183 185789579 + 1.5 NA exon (NM_173651, exon 16 of 23) exon (NM_173651, exon 16 of 23) 10769 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 290.5-9 chr12 7556153 7556392 + 1.5 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -52454 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 177.5-13 chr12 78899198 78899461 + 1.5 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 34555 NM_001291901 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 417-42 chr8 121742803 121743212 + 1.5 NA Intergenic Intergenic -101567 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 277-4 chr10 45048876 45049249 + 1.5 NA Intergenic L1MEf|LINE|L1 48139 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 222.5-27 chr7 33114927 33115207 + 1.5 NA Intergenic Intergenic -5663 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 343.5-12 chr12 111080541 111080814 + 1.5 NA intron (NM_015267, intron 1 of 21) AluJr|SINE|Alu -19327 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 205.5-20 chr5 36429942 36430156 + 1.5 NA Intergenic L1PREC2|LINE|L1 -128147 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 250-8 chr11 21100439 21100808 + 1.5 NA intron (NM_201551, intron 12 of 18) L1M3|LINE|L1 431037 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 206-27 chr9 80961167 80961422 + 1.5 NA Intergenic Intergenic 728241 NM_001303104 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 143.5-28 chr9 95122867 95123002 + 1.5 NA intron (NM_001243744, intron 10 of 13) intron (NM_001243744, intron 10 of 13) -36840 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 181-23 chr9 36456980 36457155 + 1.5 NA Intergenic Intergenic -55869 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 417-37 chr7 945493 945956 + 1.5 NA promoter-TSS (NM_001284309) promoter-TSS (NM_001284309) 92 NM_001284309 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 392-25 chr3 46062764 46063106 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack -35452 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 164.5-25 chr7 760175 760310 + 1.5 NA intron (NR_075098, intron 6 of 12) intron (NR_075098, intron 6 of 12) -32566 NM_001164758 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 325-38 chrX 36489475 36489748 + 1.5 NA Intergenic L3|LINE|CR1 -49319 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 272-30 chr5 40369003 40369222 + 1.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR -310803 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 193-6 chr17 58631655 58631880 + 1.5 NA intron (NM_031272, intron 2 of 31) U3|snRNA|snRNA 60288 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 197-3 chr1 108188699 108188839 + 1.5 NA intron (NM_013386, intron 1 of 9).2 LTR45C|LTR|ERV1 4066 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 398.5-15 chr3 96841853 96842443 + 1.5 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 27554 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 192-25 chr8 123997939 123998158 + 1.5 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 42734 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 319-12 chr16 65338901 65339240 + 1.5 NA intron (NR_027755, intron 7 of 8) intron (NR_027755, intron 7 of 8) -162497 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 272-40 chr8 122345300 122345657 + 1.5 NA Intergenic LTR67B|LTR|ERVL 223166 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 163-6 chr22 16806639 16806814 + 1.5 NA intron (NM_001318251, intron 2 of 3) AluSz|SINE|Alu 14973 NM_175878 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 219-19 chr17 72096494 72096767 + 1.5 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 19386 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 176-9 chr20 52667571 52667781 + 1.5 NA Intergenic Intergenic 46838 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 455-16 chr19 37633795 37634401 + 1.5 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 21367 NM_001320670 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 332-34 chr5 118192842 118193175 + 1.5 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -89566 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 311-26 chr5 62425273 62425633 + 1.5 NA intron (NM_001134779, intron 1 of 29) AluSq2|SINE|Alu 6569 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 372.5-9 chr2 23992977 23993426 + 1.5 NA intron (NM_181713, intron 6 of 6) intron (NM_181713, intron 6 of 6) -16884 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 147-5 chr5 33141194 33141330 + 1.5 NA Intergenic Intergenic -88473 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 166.5 chr1 42862600 42862775 + 1.5 NA intron (NR_104171, intron 1 of 3) L1M4|LINE|L1 5065 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 186.5-16 chr2 123012970 123013194 + 1.5 NA Intergenic L1M4c|LINE|L1 60399 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 418.5-13 chr18 35492944 35493346 + 1.5 NA intron (NM_001098817, intron 1 of 6) MIR|SINE|MIR 4463 NM_001308064 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 162.5-19 chr6 48754161 48754300 + 1.5 NA Intergenic Intergenic -685541 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 194-16 chr4 91472577 91472781 + 1.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 804623 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 206.5-28 chr4 42560820 42561098 + 1.5 NA intron (NM_001105529, intron 14 of 35) intron (NM_001105529, intron 14 of 35) 96146 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 356.5-23 chr2 115141376 115141701 + 1.5 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 19805 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 337-6 chr12 40698967 40699335 + 1.5 NA intron (NM_001256063, intron 1 of 15) L2c|LINE|L2 6709 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 174-15 chr2 204687789 204687905 + 1.5 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 142372 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 485-6 chr18 33782232 33782673 + 1.5 NA Intergenic Intergenic 204233 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 221-15 chr3 60212860 60213092 + 1.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -132067 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 329.5-8 chr18 687495 687910 + 1.5 NA intron (NM_202758, intron 9 of 14) L3|LINE|CR1 24928 NM_202758 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 625.5-10 chr4 130127272 130127743 + 1.5 NA Intergenic LTR78|LTR|ERV1 -248854 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 444-28 chr7 78833725 78834172 + 1.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -175040 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 161.5-15 chr4 68178583 68178837 + 1.5 NA Intergenic Intergenic -3582 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 299.5-8 chr13 65657745 65657970 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -208190 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 313.5-15 chr17_KI270729v1_random 52 306 + 1.5 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 205.5-24 chr5 140575993 140576293 + 1.5 NA Intergenic L1MB5|LINE|L1 -11539 NM_133174 10307 Hs.529449 NM_006051 ENSG00000113108 APBB3 FE65L2|SRA amyloid beta precursor protein binding family B member 3 protein-coding 310.5-18 chr16 77981569 77981844 + 1.5 NA Intergenic Intergenic -40842 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 283-42 chr7 89083732 89083920 + 1.5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -288089 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 368-8 chr13 27840636 27840994 + 1.5 NA intron (NR_047484, intron 2 of 4) intron (NR_047484, intron 2 of 4) 48332 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 468-27 chr4 57277719 57278282 + 1.5 NA Intergenic Intergenic -147872 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 193.5-8 chr11 113842146 113842307 + 1.5 NA intron (NM_001346268, intron 1 of 20) L1MB3|LINE|L1 33346 NM_001346257 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 281-14 chr12 74731974 74732396 + 1.5 NA Intergenic Intergenic 194350 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 256-11 chr18 7200818 7201115 + 1.5 NA Intergenic AluJr|SINE|Alu -30138 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 271.5-20 chr2 33396116 33396367 + 1.5 NA intron (NM_206943, intron 32 of 33) AluSx1|SINE|Alu -22275 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 228.5-16 chr18 7276378 7276640 + 1.5 NA Intergenic Intergenic 45405 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 322.5-20 chr4 35271998 35272463 + 1.5 NA Intergenic Intergenic 971709 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 199.5-22 chr2 225638319 225638595 + 1.5 NA intron (NM_001371273, intron 6 of 7) intron (NM_001371273, intron 6 of 7) 237571 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 129.5-5 chr10 61428452 61428586 + 1.5 NA intron (NR_134508, intron 4 of 6) intron (NR_134508, intron 4 of 6) -24120 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 492.5 chr1 27259687 27260099 + 1.5 NA intron (NM_001276252, intron 1 of 15) AluJb|SINE|Alu 25261 NM_015023 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 530.5-4 chr12 75695742 75696538 + 1.5 NA Intergenic Intergenic -184531 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 161.5-6 chr14 91959083 91959274 + 1.5 NA Intergenic FAM|SINE|Alu -11476 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 462.5 chr1 214510284 214510768 + 1.5 NA intron (NM_005401, intron 1 of 18) intron (NM_005401, intron 1 of 18) 41076 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 152 chr1 247497104 247497247 + 1.5 NA Intergenic L1MA5A|LINE|L1 6107 NM_001004698 441932 Hs.591526 NM_001004698 OR2W5 OR2W5P|OST722 olfactory receptor family 2 subfamily W member 5 (gene/pseudogene) protein-coding 326-21 chr2 115211307 115211594 + 1.5 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 49295 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 249.5-31 chr6 65192477 65192672 + 1.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -108844 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 283-5 chr1 211608398 211608639 + 1.5 NA Intergenic Intergenic -29357 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 335-34 chr20 19950756 19951157 + 1.5 NA intron (NM_001242581, intron 3 of 11) AluJb|SINE|Alu 61390 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 210.5 chr10 76454180 76454361 + 1.5 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -433774 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 223.5-34 chr6 89525456 89525750 + 1.5 NA intron (NM_001242809, intron 1 of 15) LTR51|LTR|ERV1 -36715 NM_001242811 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 292-33 chr8 104754250 104754520 + 1.5 NA Intergenic Intergenic -165361 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 245.5-15 chr18 78115315 78115517 + 1.5 NA Intergenic L1MA6|LINE|L1 -121689 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 206-12 chr3 33790234 33790455 + 1.5 NA Intergenic Intergenic -8227 NM_001256192 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 223.5-35 chr7 24469165 24469423 + 1.5 NA Intergenic L1MD1|LINE|L1 -104158 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 170.5-12 chr17 60969762 60969905 + 1.5 NA intron (NM_001330413, intron 14 of 25) L1MEf|LINE|L1 291982 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 234-5 chr10 79362449 79362636 + 1.5 NA Intergenic L1MB8|LINE|L1 15073 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 125.5-8 chr3 152680773 152680898 + 1.5 NA Intergenic Intergenic -154296 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 457.5-17 chr20 17087098 17087686 + 1.5 NA Intergenic L2b|LINE|L2 -138715 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 233-29 chr8 78890017 78890272 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 52615 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 196-17 chr6 47402585 47402844 + 1.5 NA Intergenic MIRb|SINE|MIR -75075 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 449.5-11 chr3 76442552 76443123 + 1.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -597262 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 116.5 chr1 212726142 212726219 + 1.5 NA TTS (NM_001297739) TTS (NM_001297739) -26340 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 178.5-5 chr15 77667412 77667638 + 1.5 NA intron (NR_120362, intron 2 of 2) intron (NR_120362, intron 2 of 2) 7474 NR_120362 101929478 Hs.569510 NR_120361 ENSG00000259281 LINGO1-AS2 - LINGO1 antisense RNA 2 ncRNA 229-10 chr13 93468779 93469086 + 1.5 NA intron (NM_005708, intron 1 of 8) (GTTT)n|Simple_repeat|Simple_repeat 242125 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 526.5-15 chr5 44715284 44715763 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 93270 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 416-20 chr3 44542125 44542677 + 1.5 NA Intergenic Intergenic -12792 NM_001288590 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 259.5-6 chr11 14623565 14623853 + 1.5 NA intron (NM_148976, intron 1 of 10) ERV3-16A3_I-int|LTR|ERVL 19925 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 310 chr1 37672714 37673034 + 1.5 NA Intergenic Intergenic 17655 NM_001350755 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 238.5-38 chr7 101806245 101806567 + 1.5 NA Intergenic Intergenic -9601 NM_001913 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 783 chr1 219960488 219961041 + 1.5 NA Intergenic Intergenic -32113 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 243-15 chr17 65538470 65538636 + 1.5 NA intron (NM_001363813, intron 4 of 9) intron (NM_001363813, intron 4 of 9) 23095 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 186-27 chr7 14456424 14456581 + 1.5 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 384948 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 178 chr1 31257427 31257621 + 1.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -17637 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 404.5-5 chr10 97371750 97372186 + 1.5 NA intron (NM_001145114, intron 18 of 31) intron (NM_001145114, intron 18 of 31) 29372 NM_015179 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 199-6 chr15 82743465 82743738 + 1.5 NA Intergenic AluSx|SINE|Alu -3821 NR_036446 283693 Hs.560399 NR_036446 ACTG1P17 - actin gamma 1 pseudogene 17 pseudo 552.5-2 chr11 21048519 21049303 + 1.5 NA intron (NM_201551, intron 12 of 18) LTR16|LTR|ERVL 379325 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 289.5-12 chr10 118727488 118727850 + 1.5 NA intron (NM_153810, intron 3 of 8) L1MC|LINE|L1 27301 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 491.5-12 chr2 121815934 121816446 + 1.5 NA Intergenic MIR|SINE|MIR 60539 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 232-25 chr5 150367986 150368178 + 1.5 NA intron (NM_001008657, intron 4 of 17) MIR3|SINE|MIR 10385 NM_000356 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 286.5-15 chr19 55931900 55932229 + 1.5 NA exon (NM_001321057, exon 1 of 12) exon (NM_001321057, exon 1 of 12) 272 NM_176810 126204 Hs.446924 NM_176810 ENSG00000173572 NLRP13 CLR19.7|NALP13|NOD14|PAN13 NLR family pyrin domain containing 13 protein-coding 259.5-43 chr8 110118822 110119065 + 1.5 NA Intergenic Intergenic -143172 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 323.5-27 chr6 26105766 26106233 + 1.5 NA Intergenic Intergenic 2051 NM_003542 8364 Hs.46423 NM_003542 ENSG00000197061 HIST1H4C H4/g|H4FG|dJ221C16.1 histone cluster 1 H4 family member c protein-coding 284.5-43 chr9 26025144 26025504 + 1.5 NA Intergenic Intergenic -41351 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 234-4 chr1 236833580 236833913 + 1.5 NA intron (NM_000254, intron 13 of 32) MIRc|SINE|MIR 38454 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 456-28 chr5 153241783 153242184 + 1.5 NA Intergenic Intergenic -248541 NR_047578 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 280.5-32 chr6 153814082 153814488 + 1.5 NA Intergenic L1M1|LINE|L1 -196211 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 347-11 chr17 69336013 69336422 + 1.5 NA Intergenic Intergenic -9084 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 380-3 chr12 92096210 92096647 + 1.5 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 45285 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 220.5-14 chr15 67306388 67306557 + 1.5 NA intron (NM_022784, intron 5 of 5) intron (NM_022784, intron 5 of 5) -51274 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 244-22 chr4 32807230 32807418 + 1.5 NA Intergenic L1MB5|LINE|L1 456286 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 326.5 chr1 165178315 165178673 + 1.5 NA Intergenic Intergenic 177747 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 187-23 chr5 17679967 17680152 + 1.5 NA Intergenic Charlie3|DNA|hAT-Charlie -24421 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 294.5-23 chr3 10791021 10791249 + 1.5 NA Intergenic L1ME3A|LINE|L1 -25093 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 258-13 chr2 127563415 127563799 + 1.5 NA intron (NR_132317, intron 2 of 2) L1M7|LINE|L1 7355 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 488-11 chr22 19513945 19514337 + 1.5 NA intron (NR_161281, intron 13 of 16) intron (NR_161281, intron 13 of 16) 10269 NM_001363066 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 485.5-3 chr16 77431171 77431589 + 1.5 NA exon (NM_199355, exon 3 of 23) exon (NM_199355, exon 3 of 23) 3654 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 398-9 chr14 60226468 60226897 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -19068 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 209.5-9 chr12 46184051 46184375 + 1.5 NA 3' UTR (NM_001278387, exon 18 of 18) 3' UTR (NM_001278387, exon 18 of 18) 82303 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 366-19 chr6 25737755 25738268 + 1.5 NA Intergenic L1M5|LINE|L1 5578 NR_045125 387319 Hs.741681 NR_045125 HIST1H2APS1 H2AFSP|bA317E16.5 histone cluster 1 H2A pseudogene 1 pseudo 271-10 chr15 67680893 67681126 + 1.5 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 131915 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 134-3 chr11 83024030 83024161 + 1.5 NA intron (NM_001286060, intron 1 of 4) intron (NM_001286060, intron 1 of 4) 10179 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 405.5-8 chr2 118368244 118368736 + 1.5 NA Intergenic Intergenic -182104 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 252-20 chr5 7907015 7907348 + 1.5 NA Intergenic L1MA4|LINE|L1 38033 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 202-21 chr5 136653186 136653370 + 1.5 NA Intergenic Intergenic -287802 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 158.5-19 chr4 114467701 114467932 + 1 NA Intergenic Intergenic -130586 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 133.5-7 chr12 90608171 90608315 + 1 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -309780 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 114.5 chr1 114647345 114647551 + 1 NA intron (NM_001256404, intron 2 of 20) AluSz6|SINE|Alu 22601 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 168.5-26 chr5 112814370 112814569 + 1 NA intron (NM_001354906, intron 9 of 16) L2|LINE|L2 -46719 NM_001204196 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 129.5-14 chr3 183795038 183795217 + 1 NA intron (NM_001351369, intron 21 of 30) AluJb|SINE|Alu 15324 NR_046727 100874113 NR_046727 YEATS2-AS1 - YEATS2 antisense RNA 1 ncRNA 115.5-7 chr15 88714795 88714948 + 1 NA Intergenic Intergenic 75855 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 215.5-18 chr17 48747517 48747912 + 1 NA Intergenic CpG -18965 NM_006361 10481 Hs.66731 NM_006361 ENSG00000159184 HOXB13 HPC9|PSGD homeobox B13 protein-coding 379.5-7 chr11 116365929 116366406 + 1 NA Intergenic Intergenic -273255 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 251.5-17 chr2 155196381 155196842 + 1 NA Intergenic Intergenic 497916 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 241.5-41 chr9 33133438 33133873 + 1 NA intron (NM_001497, intron 2 of 5) L3|LINE|CR1 24963 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 163.5-15 chr5 24535667 24535949 + 1 NA exon (NM_001317224, exon 4 of 12) exon (NM_001317224, exon 4 of 12) 109170 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 191.5-7 chr16 11301425 11301616 + 1 NA Intergenic AluSx3|SINE|Alu 5007 NR_031678 100313773 NR_031678 ENSG00000221801 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 158.5-4 chr12 76932360 76932526 + 1 NA Intergenic MER102c|DNA|hAT-Charlie -53424 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 193.5-19 chr2 238681409 238681778 + 1 NA Intergenic Intergenic -126094 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 189.5-8 chr13 92031370 92031622 + 1 NA intron (NM_004466, intron 6 of 7) L1PB1|LINE|L1 320711 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 160.5-18 chr4 114496389 114496650 + 1 NA Intergenic Intergenic -101883 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 338.5-25 chr5 118680490 118681128 + 1 NA Intergenic AluSx1|SINE|Alu 84621 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 229.5-43 chr8 134853800 134854250 + 1 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 4090 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 148.5-26 chr8 50257655 50257819 + 1 NA intron (NR_135797, intron 2 of 20) L1M4b|LINE|L1 93606 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 427.5-13 chr15 98031145 98031715 + 1 NA Intergenic AluJr|SINE|Alu 28392 NR_146564 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 256.5-10 chr15 94360269 94360718 + 1 NA intron (NM_018349, intron 9 of 21) intron (NM_018349, intron 9 of 21) 4563 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 146.5-9 chr13 114298646 114298833 + 1 NA intron (NR_148485, intron 5 of 6) intron (NR_148485, intron 5 of 6) -15764 NM_032436 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 328.5 chr1 111882322 111882871 + 1 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) -25691 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 319.5-3 chr10 16316072 16316706 + 1 NA Intergenic AluSx3|SINE|Alu -120554 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 437.5-3 chr1 233910856 233911445 + 1 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 6474 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 157.5-28 chrY 11333618 11333825 + 1 NA Intergenic Intergenic 1087869 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 128.5-14 chr17 57332346 57332572 + 1 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 75440 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 208.5-25 chr5 132705563 132705927 + 1 NA intron (NM_007054, intron 9 of 16) intron (NM_007054, intron 9 of 16) -23116 NR_134248 105379176 Hs.73917 NR_134248 LOC105379176 - uncharacterized LOC105379176 ncRNA 187.5-8 chr12 114678231 114678499 + 1 NA intron (NM_016569, intron 4 of 7) intron (NM_016569, intron 4 of 7) 5810 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 182.5-31 chr9 73778085 73778383 + 1 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -593297 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 178.5-10 chr2 193322880 193323076 + 1 NA Intergenic Intergenic 573133 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 299.5-36 chr9 78974100 78974483 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 171375 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 263.5-21 chr5 133242096 133242592 + 1 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 185362 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 203.5-20 chr3 29166860 29167247 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 113886 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 145.5-24 chr5 134311636 134311876 + 1 NA intron (NM_001349366, intron 2 of 8) MIRb|SINE|MIR 55318 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 259.5-5 chr11 9572613 9572967 + 1 NA promoter-TSS (NM_003390) promoter-TSS (NM_003390) -880 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 309.5-10 chr12 116392948 116393449 + 1 NA Intergenic MIR|SINE|MIR 35120 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 196.5-10 chr16 53923035 53923320 + 1 NA intron (NM_001363894, intron 8 of 9) intron (NM_001363894, intron 8 of 9) -116216 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 178.5-17 chr5 38464194 38464451 + 1 NA 3' UTR (NM_001205301, exon 23 of 23) 3' UTR (NM_001205301, exon 23 of 23) 18776 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 294.5-31 chr6 68807390 68807791 + 1 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 172308 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 184.5-22 chr5 162852512 162852783 + 1 NA Intergenic Intergenic -584924 NM_001364018 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 379.5-27 chr9 99569205 99569757 + 1 NA Intergenic L2c|LINE|L2 -194224 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 154.5-26 chr8 71603698 71603898 + 1 NA Intergenic Intergenic -55704 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 315.5-23 chr20 4426458 4426830 + 1 NA Intergenic Intergenic -177357 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 203.5-11 chr15 63506682 63507054 + 1 NA intron (NM_001256702, intron 1 of 13) intron (NM_001256702, intron 1 of 13) 2275 NM_006537 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 128.5-2 chr1 18982264 18982513 + 1 NA Intergenic L1ME3E|LINE|L1 -25712 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 200.5-8 chr10 73808382 73808763 + 1 NA non-coding (NR_160743, exon 3 of 15) non-coding (NR_160743, exon 3 of 15) 3026 NM_003635 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|N-HSST 2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 195.5-32 chr8 79062782 79063145 + 1 NA Intergenic AluSx1|SINE|Alu 225434 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 268.5-31 chr7 2141066 2141569 + 1 NA intron (NM_001013837, intron 11 of 18) intron (NM_001013837, intron 11 of 18) -52265 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 162.5-3 chr10 81346813 81347052 + 1 NA Intergenic Intergenic -528262 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 271.5-16 chr15 73325390 73325747 + 1 NA intron (NM_005477, intron 4 of 7) intron (NM_005477, intron 4 of 7) 25658 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 183.5-26 chr6 19842223 19842525 + 1 NA TTS (NM_001546) TTS (NM_001546) 5004 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 215.5-23 chr2 171864986 171865363 + 1 NA intron (NM_003705, intron 3 of 17) L2a|LINE|L2 29070 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 226.5-25 chr8 92313687 92314030 + 1 NA Intergenic L1PA6|LINE|L1 -210473 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 112.5-9 chr2 186654375 186654503 + 1 NA intron (NM_001145000, intron 13 of 27) L3b|LINE|CR1 -39621 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 288.5-9 chr10 23627821 23628328 + 1 NA Intergenic Intergenic -66653 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 183.5-3 chr1 45178760 45179059 + 1 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 27696 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 155.5-15 chr5 152391669 152391824 + 1 NA 3' UTR (NM_020167, exon 4 of 4) 3' UTR (NM_020167, exon 4 of 4) 13533 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 148.5-20 chr4 32456987 32457196 + 1 NA Intergenic Charlie2b|DNA|hAT-Charlie 106053 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 230.5-53 chr9 34392873 34393283 + 1 NA intron (NM_032596, intron 1 of 6) MLT2F|LTR|ERVL 4732 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 209.5-11 chr12 122404157 122404560 + 1 NA intron (NM_198240, intron 1 of 23) AluSz|SINE|Alu 8816 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 502.5-16 chr9 34990388 34991165 + 1 NA exon (NM_001135004, exon 2 of 5) exon (NM_001135004, exon 2 of 5) 486 NM_001135005 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 331.5-21 chr5 152662508 152663073 + 1 NA intron (NR_109877, intron 4 of 4) Tigger3b|DNA|TcMar-Tigger -257511 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 146.5-16 chr2 64489370 64489656 + 1 NA intron (NR_147011, intron 2 of 2) intron (NR_147011, intron 2 of 2) 3160 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 201.5-20 chr22 26359807 26360166 + 1 NA intron (NM_001184777, intron 12 of 14) MIRb|SINE|MIR -69274 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 196.5-26 chr5 19125836 19126221 + 1 NA Intergenic L1MD3|LINE|L1 760244 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 189.5-4 chr11 46311104 46311400 + 1 NA intron (NM_052854, intron 5 of 11) intron (NM_052854, intron 5 of 11) -21674 NM_201532 8525 Hs.502461 NM_003646 ENSG00000149091 DGKZ DAGK5|DAGK6|DGK-ZETA|hDGKzeta diacylglycerol kinase zeta protein-coding 233.5-6 chr14 37924531 37924952 + 1 NA Intergenic Intergenic -22617 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 187.5-20 chr3 136271218 136271586 + 1 NA intron (NM_000532, intron 5 of 14) L1PBb|LINE|L1 21062 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 222.5-30 chr8 124936957 124937397 + 1 NA Intergenic Intergenic -4831 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 145.5-31 chr8 137115998 137116246 + 1 NA Intergenic L1M4|LINE|L1 297466 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 237.5-13 chr20 35916771 35917184 + 1 NA intron (NM_016436, intron 12 of 17) AluJo|SINE|Alu 37649 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 256.5-16 chr2 13958099 13958609 + 1 NA Intergenic L1PB4|LINE|L1 442604 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 193.5-27 chr6 64884854 64885213 + 1 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -416385 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 210.5-19 chr5 4079068 4079385 + 1 NA Intergenic Intergenic 483394 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 160.5-11 chr17 67765075 67765305 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 24520 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 238.5-40 chr8 102189658 102190111 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 48947 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 217.5-31 chr8 72477346 72477682 + 1 NA Intergenic L1PA17|LINE|L1 -59711 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 133.5-13 chr2 25017934 25018171 + 1 NA intron (NR_034113, intron 2 of 2) HAL1|LINE|L1 -24024 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 168.5-7 chr11 82227598 82227877 + 1 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 176176 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 352.5-31 chr8 122368987 122369521 + 1 NA Intergenic Intergenic 199390 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 117.5-16 chr4 46278846 46278982 + 1 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 110465 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 185.5-8 chr16 62472410 62472710 + 1 NA Intergenic L1PREC2|LINE|L1 -436122 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 220.5-20 chr3 117417693 117418044 + 1 NA Intergenic MIRc|SINE|MIR 273057 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 123.5-2 chr10 21998511 21998671 + 1 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 5139 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 313.5-13 chr17 13942239 13942769 + 1 NA Intergenic Intergenic -81994 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 137.5-11 chr13 113178723 113178941 + 1 NA intron (NM_001127202, intron 13 of 13) intron (NM_001127202, intron 13 of 13) 20178 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 170.5-14 chr2 130924658 130924971 + 1 NA intron (NM_001367493, intron 2 of 13) MIR3|SINE|MIR 87900 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 278.5-12 chr20 59021197 59021621 + 1 NA intron (NM_030773, intron 1 of 3) intron (NM_030773, intron 1 of 3) 2155 NM_030773 81027 Hs.303023 NM_030773 ENSG00000101162 TUBB1 - tubulin beta 1 class VI protein-coding 405.5-23 chr7 93065633 93066158 + 1 NA Intergenic L1MA5|LINE|L1 52084 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 150.5-24 chr9 17866804 17867025 + 1 NA Intergenic Intergenic 287848 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 257.5-30 chr4 58122714 58123151 + 1 NA Intergenic Intergenic 413396 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 216.5-15 chr15 63955956 63956261 + 1 NA intron (NM_014326, intron 4 of 11) L1MA3|LINE|L1 27834 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 154.5-5 chr10 117637562 117637784 + 1 NA Intergenic L1MC4|LINE|L1 -92605 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 362.5-14 chr18 8091748 8092425 + 1 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 274948 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 313.5-4 chr1 163475272 163475657 + 1 NA Intergenic Intergenic -52273 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 207.5-40 chr9 80562260 80562596 + 1 NA Intergenic Intergenic 587405 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 181.5-14 chr15 64456430 64456651 + 1 NA Intergenic Intergenic -42880 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 341.5-24 chr3 179015551 179015999 + 1 NA Intergenic Intergenic 56034 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 218.5-3 chr10 73437039 73437379 + 1 NA 3' UTR (NM_021132, exon 14 of 14) 3' UTR (NM_021132, exon 14 of 14) -3648 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 185.5-23 chr3 19292849 19293100 + 1 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 21957 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 260.5-8 chr13 98682547 98682986 + 1 NA Intergenic Intergenic 69906 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 222.5-18 chr3 90034034 90034406 + 1 NA Intergenic Intergenic 926599 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 118.5-10 chr3 95519250 95519368 + 1 NA Intergenic L1MC3|LINE|L1 163884 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 302.5-34 chr5 55502293 55502714 + 1 NA intron (NR_103485, intron 1 of 6) MER3|DNA|hAT-Charlie 6423 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 144.5-15 chr4 37791841 37792054 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR -34739 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 228.5-9 chr11 119512789 119513069 + 1 NA Intergenic Intergenic -87944 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 222.5-19 chr3 120403944 120404353 + 1 NA intron (NM_007085, intron 7 of 10) MIRc|SINE|MIR -8419 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 130.5 chr10 23492054 23492223 + 1 NA Intergenic Intergenic 52869 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 167.5-13 chr2 195512139 195512426 + 1 NA Intergenic Intergenic -144676 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 136.5-9 chr15 59933120 59933361 + 1 NA Intergenic Intergenic -71071 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 153.5 chr1 37666072 37666330 + 1 NA Intergenic Intergenic 24328 NM_001350755 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 120.5-17 chr5 13016442 13016632 + 1 NA intron (NR_147005, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 16349 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 125.5-3 chr13 21429045 21429242 + 1 NA intron (NR_104486, intron 1 of 14) intron (NR_104486, intron 1 of 14) 30160 NM_001330059 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 294.5-3 chr1 76066348 76066784 + 1 NA Intergenic Intergenic -8180 NM_001160011 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 286.5-8 chr10 78563972 78564315 + 1 NA Intergenic Intergenic 296801 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 321.5-10 chr11 20611464 20611822 + 1 NA intron (NM_004211, intron 5 of 15) LTR26B|LTR|ERV1 12243 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 385.5-42 chr8 87411129 87411530 + 1 NA Intergenic Intergenic 462686 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 145.5-9 chr12 42134938 42135146 + 1 NA intron (NM_173601, intron 1 of 7) intron (NM_173601, intron 1 of 7) 9832 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 147.5-18 chr7 33976507 33976791 + 1 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 71110 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 181.5-24 chr4 155008893 155009140 + 1 NA Intergenic Intergenic -199620 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 307.5-35 chr7 8674327 8674755 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 240932 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 159.5-17 chr2 206286511 206286778 + 1 NA intron (NM_001369654, intron 4 of 5) FLAM_A|SINE|Alu 11634 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 171.5-17 chr3 100272331 100272589 + 1 NA intron (NM_001199198, intron 1 of 18) L1PREC2|LINE|L1 11468 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 123.5-10 chr20 48654508 48654665 + 1 NA intron (NM_020820, intron 19 of 39) MER20|DNA|hAT-Charlie 173413 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 385.5-4 chr10 19365751 19366307 + 1 NA intron (NM_001142308, intron 26 of 39) MER1A|DNA|hAT-Charlie 317228 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 288.5-42 chr9 31612567 31613122 + 1 NA Intergenic Intergenic -231354 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 292.5-12 chr15 96778808 96779264 + 1 NA intron (NR_102754, intron 1 of 2) intron (NR_102754, intron 1 of 2) 2618 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 272.5-15 chr17 17966734 17967257 + 1 NA intron (NM_001288787, intron 1 of 13) MLT2A2|LTR|ERVL 5405 NM_001082968 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 143.5-24 chr6 42254027 42254170 + 1 NA intron (NM_001297573, intron 13 of 17) intron (NM_001297573, intron 13 of 17) -36237 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 149.5-20 chr9 30915230 30915418 + 1 NA Intergenic L1MB3|LINE|L1 466166 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 176.5-20 chr3 197979841 197980164 + 1 NA intron (NR_026786, intron 5 of 16) intron (NR_026786, intron 5 of 16) 19785 NR_026787 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 296.5-16 chr2 106729632 106730125 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR 156150 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 177.5-5 chr10 16525118 16525463 + 1 NA Intergenic Intergenic -3411 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 392.5-17 chr19 41339875 41340455 + 1 NA intron (NM_000660, intron 5 of 6) intron (NM_000660, intron 5 of 6) 13757 NM_000660 7040 Hs.645227 NM_000660 ENSG00000105329 TGFB1 CED|DPD1|IBDIMDE|LAP|TGFB|TGFbeta transforming growth factor beta 1 protein-coding 217.5-6 chr10 74469284 74469596 + 1 NA intron (NM_001369124, intron 6 of 9) AluJr4|SINE|Alu 59884 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 231.5-17 chr20 22212343 22212762 + 1 NA Intergenic L1MB3|LINE|L1 70249 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 251.5-4 chr10 111177679 111178051 + 1 NA Intergenic Intergenic 63574 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 258.5-7 chr14 60303065 60303476 + 1 NA Intergenic Intergenic -19926 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 203.5-26 chr5 159018719 159019005 + 1 NA intron (NM_182708, intron 5 of 14) MIRb|SINE|MIR 79094 NM_001364156 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 242.5-37 chr8 81756130 81756529 + 1 NA intron (NM_152284, intron 3 of 4) MER58C|DNA|hAT-Charlie 23881 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 281.5-26 chr5 24821466 24821971 + 1 NA Intergenic L1PA16|LINE|L1 18865 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 269.5-3 chr1 76639839 76640176 + 1 NA Intergenic Intergenic 139260 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 315.5-4 chr1 188921266 188921748 + 1 NA Intergenic Intergenic 1477879 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 176.5-27 chr6 41655597 41655773 + 1 NA Intergenic Intergenic 17217 NM_001300805 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 153.5-6 chr2 137897636 137897883 + 1 NA intron (NR_120402, intron 2 of 2) LTR1E|LTR|ERV1 30173 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 363.5-32 chr8 78617172 78617643 + 1 NA Intergenic AluSx1|SINE|Alu -48682 NR_156423 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 201.5-9 chr12 86692408 86692683 + 1 NA intron (NM_001351285, intron 2 of 8) L1MEg|LINE|L1 52604 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 314.5-8 chr11 110343798 110344329 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -11051 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 428.5-15 chr2 146444856 146445440 + 1 NA Intergenic Intergenic -141909 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 167.5-6 chr13 45983762 45984032 + 1 NA intron (NM_001330566, intron 11 of 19) intron (NM_001330566, intron 11 of 19) 68849 NM_001330566 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 189.5-3 chr10 26404673 26404982 + 1 NA Intergenic L1ME3G|LINE|L1 -33514 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 182.5-12 chr2 207668286 207668501 + 1 NA intron (NR_135566, intron 2 of 3) AluSg|SINE|Alu 5963 NR_135567 102724714 Hs.443475 NR_135566 ENSG00000224137 LINC01857 - long intergenic non-protein coding RNA 1857 ncRNA 131.5 chr1 24491916 24492101 + 1 NA Intergenic Intergenic -10336 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 129.5 chr1 60784374 60784585 + 1 NA intron (NR_110628, intron 1 of 5) MER89-int|LTR|ERV1 41105 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 146.5-3 chr1 186364688 186364955 + 1 NA intron (NM_003292, intron 4 of 50) Tigger2|DNA|TcMar-Tigger 10432 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 431.5-26 chr9 118684372 118685087 + 1 NA intron (NR_151725, intron 2 of 3) L1MB3|LINE|L1 5058 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 169.5-19 chr6 146738049 146738303 + 1 NA intron (NM_024694, intron 23 of 35) MIR|SINE|MIR 65648 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 221.5-19 chr4 171360622 171360974 + 1 NA Intergenic Intergenic 174614 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 196.5-24 chr3 60318387 60318714 + 1 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -237641 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 118.5-13 chr6 94884900 94885105 + 1 NA Intergenic L1MC1|LINE|L1 692449 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 181.5-23 chr4 115078571 115078778 + 1 NA intron (NM_022569, intron 1 of 13) AluSg7|SINE|Alu 34946 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 316.5-31 chrX 96867995 96868402 + 1 NA intron (NM_007309, intron 4 of 26) Charlie29a|DNA|hAT-Charlie -15710 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 176.5-6 chr18 52877541 52877717 + 1 NA intron (NM_005215, intron 2 of 28) AluJb|SINE|Alu -359472 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 323.5-10 chr14 54723136 54723704 + 1 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -31413 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 222.5-29 chr8 91772454 91772741 + 1 NA Intergenic Intergenic 245083 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 149.5-14 chr5 149540112 149540373 + 1 NA intron (NM_001271742, intron 1 of 9) intron (NM_001271742, intron 1 of 9) 10123 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 229.5-26 chr3 99825510 99825940 + 1 NA intron (NM_032359, intron 1 of 9) intron (NM_032359, intron 1 of 9) -1860 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 162.5-5 chr11 78769396 78769580 + 1 NA intron (NM_001098816, intron 18 of 33) intron (NM_001098816, intron 18 of 33) -194624 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 143.5-7 chr12 50815763 50816021 + 1 NA intron (NM_005171, intron 6 of 6) L1MA4A|LINE|L1 -27034 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 256.5-7 chr13 48986950 48987443 + 1 NA intron (NR_103528, intron 1 of 25) intron (NR_103528, intron 1 of 25) 10534 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 460.5-10 chr17 26884880 26885464 + 1 NA Intergenic ALR/Alpha|Satellite|centr 204069 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 291.5-4 chr10 52791452 52792029 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -20040 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 244.5-8 chr12 104492059 104492531 + 1 NA intron (NM_018413, intron 1 of 2) AluY|SINE|Alu 35347 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 195.5-5 chr10 53487461 53487812 + 1 NA Intergenic LTR1D|LTR|ERV1 -715936 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 120.5-19 chr8 70709648 70709830 + 1 NA intron (NM_001287259, intron 5 of 5) L1PA15|LINE|L1 40400 NM_001287260 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 159.5-12 chr14 86647864 86648119 + 1 NA Intergenic L1PA16|LINE|L1 -257787 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 291.5-3 chr10 34670834 34671280 + 1 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 144239 NM_001184785 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 128.5-23 chr4 107326416 107326665 + 1 NA Intergenic L1MB8|LINE|L1 -290227 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 226.5-16 chr2 186950052 186950425 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -101068 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 280.5-38 chr8 68551476 68551874 + 1 NA intron (NR_146186, intron 7 of 12) L1MCa|LINE|L1 -220184 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 146.5-25 chr22 46217568 46217810 + 1 NA intron (NM_001001928, intron 4 of 7) intron (NM_001001928, intron 4 of 7) 32604 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 166.5-14 chr3 2887426 2887592 + 1 NA intron (NM_175607, intron 10 of 24) intron (NM_175607, intron 10 of 24) -4706 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 151.5-12 chr2 81803705 81803944 + 1 NA Intergenic L1MA7|LINE|L1 -336878 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 265.5-8 chr12 43532209 43532690 + 1 NA intron (NM_025003, intron 2 of 38) intron (NM_025003, intron 2 of 38) 19754 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 491.5-19 chr8 117125587 117126155 + 1 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -9124 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 135.5-9 chr3 125071086 125071288 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15190 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 217.5-12 chr13 66551974 66552267 + 1 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -273049 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 388.5 chr12 3903020 3903610 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -29867 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 190.5-20 chrX 66011885 66012175 + 1 NA Intergenic Intergenic -6840 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 142.5-5 chr14 56172022 56172178 + 1 NA intron (NM_021255, intron 1 of 5) MLT1H1|LTR|ERVL-MaLR 53689 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 244.5-23 chr21 34179089 34179464 + 1 NA Intergenic Intergenic -1401 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 116.5-3 chr10 66855113 66855329 + 1 NA intron (NM_001127384, intron 7 of 17) MER5B|DNA|hAT-Charlie -70815 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 170.5-21 chr5 55381748 55381954 + 1 NA intron (NM_015360, intron 18 of 26) L1M4b|LINE|L1 73862 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 204.5-15 chr15 23480679 23481051 + 1 NA Intergenic L1PB|LINE|L1 -33622 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 143.5-4 chr10 12911690 12911923 + 1 NA intron (NM_001282658, intron 6 of 6) L1MA8|LINE|L1 89907 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 190.5-7 chr13 34080424 34080614 + 1 NA Intergenic Intergenic 262370 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 188.5-18 chr4 92330731 92330920 + 1 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 26426 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 188.5-4 chr14 64022464 64022723 + 1 NA intron (NM_015180, intron 37 of 114) intron (NM_015180, intron 37 of 114) 72532 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 222.5-7 chr16 30682674 30683082 + 1 NA Intergenic L1M5|LINE|L1 15593 NM_001256932 730183 Hs.535456 NM_001256932 ENSG00000261840 LOC730183 - uncharacterized LOC730183 protein-coding 203.5 chr1 15876316 15876699 + 1 NA exon (NM_015001, exon 3 of 15) exon (NM_015001, exon 3 of 15) -28360 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 297.5-14 chr17 54017710 54018253 + 1 NA Intergenic L2a|LINE|L2 195054 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 374.5-7 chr12 88907298 88907744 + 1 NA Intergenic AluSx1|SINE|Alu 112171 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 401.5-11 chr16 89470444 89471107 + 1 NA intron (NM_001256182, intron 1 of 13) AluY|SINE|Alu 19786 NM_013275 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 358.5-5 chr11 113822194 113822686 + 1 NA intron (NM_001346268, intron 8 of 20) AluSg|SINE|Alu 42644 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 187.5-32 chr8 122097124 122097391 + 1 NA Intergenic FLAM_C|SINE|Alu -455817 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 264.5-6 chr10 63397029 63397386 + 1 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -24159 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 120.5-16 chr4 49100303 49100462 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 113740 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 257.5-39 chr6 54540466 54540821 + 1 NA Intergenic Intergenic 232202 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 128.5-20 chr3 97069484 97069707 + 1 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 255001 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 358.5-19 chr4 161166 161857 + 1 NA exon (NM_001289930, exon 4 of 4) exon (NM_001289930, exon 4 of 4) 33390 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 117.5-23 chrUn_GL000216v2 3282 3461 + 1 NA NA (CATTC)n|Satellite|Satellite NA NA 340.5-23 chr4 161234671 161235204 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -787796 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 281.5-9 chr14 87024899 87025243 + 1 NA Intergenic L1ME3B|LINE|L1 119293 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 168.5-25 chr5 84810420 84810698 + 1 NA Intergenic Intergenic -425679 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 265.5-36 chr6 141787108 141787610 + 1 NA Intergenic L1ME1|LINE|L1 301440 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 133.5-17 chr3 46891793 46892040 + 1 NA intron (NM_001184744, intron 2 of 14) intron (NM_001184744, intron 2 of 14) 9667 NM_001184744 5745 Hs.1019 NM_000316 ENSG00000160801 PTH1R EKNS|PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 190.5-15 chr3 46537146 46537438 + 1 NA intron (NM_024512, intron 4 of 8) AluJb|SINE|Alu -20106 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 174.5-12 chr15 40492790 40493038 + 1 NA Intergenic AluJo|SINE|Alu 21953 NM_130468 113189 Hs.442449 NM_130468 ENSG00000169105 CHST14 ATCS|D4ST1|EDSMC1|HNK1ST carbohydrate sulfotransferase 14 protein-coding 403.5-21 chr5 133319985 133320435 + 1 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 107496 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 112.5-11 chr5 125789283 125789430 + 1 NA Intergenic L1ME3G|LINE|L1 296095 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 278.5-16 chr3 128029741 128030140 + 1 NA Intergenic L1MA7|LINE|L1 -22497 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 221.5-26 chr8 26713014 26713422 + 1 NA Intergenic Intergenic 134813 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 155.5-11 chr22 34776044 34776251 + 1 NA intron (NR_138042, intron 3 of 4) L2c|LINE|L2 221769 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 158.5-25 chrX 34107299 34107457 + 1 NA Intergenic L1MA3|LINE|L1 24952 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 419.5-18 chr6 54653873 54654493 + 1 NA Intergenic Intergenic -192588 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 119.5-7 chr18 60546388 60546613 + 1 NA Intergenic AluSx1|SINE|Alu -173725 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 145.5-27 chr7 6297769 6298003 + 1 NA Intergenic AluJb|SINE|Alu -25262 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 197.5-2 chr1 41443919 41444192 + 1 NA Intergenic MIRb|SINE|MIR 40628 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 224.5-31 chr8 101148839 101149140 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 56684 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 259.5-16 chr17 67997977 67998237 + 1 NA Intergenic AluSx1|SINE|Alu -4501 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 230.5-41 chr5 165956640 165957037 + 1 NA Intergenic Intergenic 969532 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 246.5-30 chr4 72386914 72387301 + 1 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 182114 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 367.5-4 chr1 119741040 119741556 + 1 NA intron (NM_006623, intron 9 of 11) intron (NM_006623, intron 9 of 11) 27634 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 122.5-19 chr6 159516478 159516612 + 1 NA Intergenic L1PREC2|LINE|L1 133014 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 131.5-29 chrUn_GL000216v2 6094 6270 + 1 NA NA (CATTC)n|Satellite|Satellite NA NA 140.5-3 chr1 221244144 221244412 + 1 NA Intergenic Charlie2a|DNA|hAT-Charlie 92018 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 201.5 chr1 67864544 67864852 + 1 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -31231 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 134.5-7 chr14 26541080 26541269 + 1 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 12256 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 186.5-23 chr5 150212358 150212679 + 1 NA Intergenic Intergenic 22456 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 178.5-13 chr3 87926761 87926939 + 1 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -55726 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 361.5-25 chr5 66857540 66858140 + 1 NA intron (NM_015183, intron 1 of 27) L1M5|LINE|L1 29067 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 156.5-5 chr12 28570496 28570694 + 1 NA Intergenic Intergenic -379857 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 231.5-5 chr15 65543795 65544216 + 1 NA intron (NM_016395, intron 1 of 10) AluY|SINE|Alu 13542 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 146.5-6 chr10 41912666 41912839 + 1 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 455293 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 215.5-27 chr20 19603069 19603456 + 1 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -283259 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 289.5-23 chr2 134882195 134882548 + 1 NA intron (NR_036549, intron 1 of 4) MIRb|SINE|MIR 24551 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 283.5-31 chr6 48563983 48564455 + 1 NA Intergenic MSTB-int|LTR|ERVL-MaLR -495530 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 187.5-5 chr10 59595844 59596111 + 1 NA Intergenic MIR|SINE|MIR 113914 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 244.5-9 chr12 124098909 124099242 + 1 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 125860 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 263.5-22 chr5 153512500 153512909 + 1 NA intron (NM_001258020, intron 3 of 16) MamTip2|DNA|hAT-Tip100 20532 NM_001258022 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 146.5-10 chr14 103632169 103632411 + 1 NA intron (NM_182923, intron 1 of 14) AluSx|SINE|Alu 3102 NM_182923 3831 Hs.20107 NM_005552 ENSG00000126214 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 309.5-14 chr17 13564895 13565366 + 1 NA intron (NM_006042, intron 1 of 1) L1MEd|LINE|L1 -21484 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 194.5-33 chr8 117450013 117450226 + 1 NA Intergenic Intergenic -70594 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 255.5-13 chr19 28375157 28375517 + 1 NA Intergenic Intergenic -231351 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 195.5-29 chr6 128741964 128742215 + 1 NA Intergenic LTR16C|LTR|ERVL -141049 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 219.5-31 chr5 38787559 38787983 + 1 NA intron (NR_109951, intron 2 of 3) THE1B|LTR|ERVL-MaLR 58058 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 136.5-21 chr8 127595189 127595458 + 1 NA Intergenic Intergenic -113184 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 345.5-36 chr9 102123699 102124338 + 1 NA Intergenic L1MC|LINE|L1 -385438 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 395.5-27 chr4 116897439 116897851 + 1 NA Intergenic Intergenic 187931 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 196.5-8 chr14 98220554 98220845 + 1 NA Intergenic L3|LINE|CR1 -242575 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 144.5-11 chr20 57927082 57927328 + 1 NA Intergenic Intergenic -76699 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 195.5-16 chr2 59352716 59353049 + 1 NA Intergenic Intergenic 135174 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 271.5 chr1 40464444 40464920 + 1 NA TTS (NM_023070) TTS (NM_023070) -12608 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 168.5 chr1 49998935 49999198 + 1 NA intron (NM_001323575, intron 1 of 12) L1PBa|LINE|L1 24888 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 161.5-9 chr17 77836671 77836920 + 1 NA Intergenic L1MB8|LINE|L1 47292 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 156.5-28 chr9 15314984 15315140 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -7702 NM_001168339 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 185.5-19 chr2 173864195 173864480 + 1 NA Intergenic Charlie17|DNA|hAT-Charlie 99543 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 334.5-24 chr4 71630603 71631121 + 1 NA Intergenic LTR8B|LTR|ERV1 153217 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 204.5-34 chrX 98754438 98754801 + 1 NA Intergenic L1MA2|LINE|L1 -1190084 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 249.5-7 chr12 61613926 61614299 + 1 NA Intergenic Intergenic 578727 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 204.5-33 chrX 42947197 42947590 + 1 NA Intergenic LTR48B|LTR|ERV1 -169230 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 164.5-2 chr1 91205033 91205197 + 1 NA Intergenic LTR56|LTR|ERV1 -182860 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 220.5-23 chr4 59282990 59283416 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 269630 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 266.5-15 chr2 82388010 82388522 + 1 NA Intergenic L1MA2|LINE|L1 -468537 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 161.5-2 chr10 113682719 113683010 + 1 NA intron (NM_001227, intron 1 of 6) L1MA9|LINE|L1 2952 NM_033339 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 136.5-7 chr12 21909031 21909275 + 1 NA intron (NM_005691, intron 8 of 37) intron (NM_005691, intron 8 of 37) 27541 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 361.5-13 chr2 338413 339042 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 22443 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 177.5-25 chr7 82007984 82008295 + 1 NA intron (NM_000722, intron 15 of 38) intron (NM_000722, intron 15 of 38) -1038 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 177.5-30 chr9 72336880 72337057 + 1 NA intron (NR_110952, intron 4 of 4) AluSz|SINE|Alu 27588 NM_001278245 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 406.5-15 chr2 64172021 64172657 + 1 NA Intergenic MIRb|SINE|MIR -27919 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 264.5-24 chr3 7203134 7203612 + 1 NA intron (NM_000844, intron 2 of 9) L1MA4A|LINE|L1 -309356 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 195.5-13 chr16 65868345 65868653 + 1 NA Intergenic Intergenic -292199 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 175.5-18 chr22 36730784 36730985 + 1 NA intron (NR_134623, intron 2 of 3) intron (NR_134623, intron 2 of 3) 27008 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 155.5-2 chr10 120318128 120318385 + 1 NA Intergenic Intergenic 36967 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 137.5-24 chr8 16273231 16273399 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger -80524 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 177.5-9 chr11 81835247 81835561 + 1 NA Intergenic Intergenic 55432 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 176.5-3 chr14 37864642 37864818 + 1 NA Intergenic Intergenic 37394 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 223.5-39 chr8 37201433 37201816 + 1 NA Intergenic MER2|DNA|TcMar-Tigger 292289 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 275.5-21 chr20 1097669 1098048 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR -15371 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 306.5-27 chr4 94331855 94332458 + 1 NA intron (NM_014485, intron 2 of 5) LTR28B|LTR|ERV1 10680 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 181.5-28 chr5 158332278 158332546 + 1 NA intron (NR_109888, intron 5 of 6) L1PA15|LINE|L1 77361 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 167.5-24 chr7 11485386 11485659 + 1 NA intron (NM_015204, intron 6 of 26) MIRb|SINE|MIR 346676 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 116.5-13 chr5 11739297 11739444 + 1 NA intron (NM_001288717, intron 1 of 20) L2|LINE|L2 -150304 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 203.5-13 chr17 65486900 65487247 + 1 NA Intergenic L2a|LINE|L2 29532 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 133.5-4 chr11 67243229 67243426 + 1 NA intron (NR_027473, intron 13 of 20) intron (NR_027473, intron 13 of 20) 3313 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 346.5-30 chr8 82078280 82078805 + 1 NA Intergenic AluJr|SINE|Alu -236256 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 348.5-22 chr5 118439276 118439885 + 1 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 122537 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 126.5-5 chr17 55677680 55677928 + 1 NA Intergenic Intergenic 45060 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 265.5-38 chr6 166163747 166164164 + 1 NA intron (NM_001366285, intron 5 of 7) intron (NM_001366285, intron 5 of 7) 3896 NM_001366285 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 305.5-28 chr5 124587540 124587937 + 1 NA Intergenic Intergenic -149218 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 289.5-40 chr8 129875645 129876163 + 1 NA intron (NM_001353278, intron 4 of 13) AluSx|SINE|Alu 63907 NM_001353268 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 157.5 chr1 86920530 86920840 + 1 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 6050 NM_001134492 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 112.5-6 chr14 61804446 61804596 + 1 NA Intergenic Intergenic -7641 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 246.5-6 chr11 109944921 109945283 + 1 NA Intergenic Intergenic -148290 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 299.5-19 chr2 181815861 181816354 + 1 NA Intergenic Intergenic -75623 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 278.5-9 chr2 53442350 53442739 + 1 NA Intergenic Intergenic -325239 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 321.5-6 chr1 196196501 196196980 + 1 NA Intergenic Intergenic -108025 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235.5-20 chr4 5255722 5256020 + 1 NA intron (NM_001306082, intron 4 of 12) L1ME3|LINE|L1 204391 NM_001345969 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 189.5-20 chr4 30725552 30725818 + 1 NA TTS (NM_032456) TTS (NM_032456) 5316 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 319.5-11 chr16 31758274 31758657 + 1 NA intron (NM_001130913, intron 4 of 4) L1MC4a|LINE|L1 45236 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 161.5-7 chr15 90256914 90257189 + 1 NA intron (NR_104604, intron 6 of 9) MIR|SINE|MIR 7519 NR_104604 440307 Hs.632164 NM_001029964 ENSG00000213471 TTLL13P TTLL13 tubulin tyrosine ligase like 13, pseudogene pseudo 390.5-34 chrX 40418784 40419453 + 1 NA Intergenic MIRb|SINE|MIR 156201 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 158.5-18 chr3 98599514 98599765 + 1 NA Intergenic Tigger6b|DNA|TcMar-Tigger -6028 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 242.5-6 chr14 99311993 99312360 + 1 NA Intergenic L1MEd|LINE|L1 -39979 NM_001282237 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 229.5-44 chr9 87798955 87799336 + 1 NA Intergenic Intergenic 26230 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 269.5-19 chr2 55856872 55857369 + 1 NA Intergenic L2b|LINE|L2 66662 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 145.5-8 chr12 11668030 11668288 + 1 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 18305 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 160.5-16 chr4 40726866 40727095 + 1 NA Intergenic L1MB7|LINE|L1 -22975 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 273.5-30 chr8 48928593 48929094 + 1 NA Intergenic Intergenic -7414 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 189.5-16 chr3 94411996 94412336 + 1 NA Intergenic Intergenic 349105 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 268.5-3 chr11 33223246 33223750 + 1 NA Intergenic AluJr4|SINE|Alu -33174 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 238.5-31 chr4 182497036 182497392 + 1 NA intron (NM_001080477, intron 3 of 27) AluSc|SINE|Alu 253812 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 200.5-25 chr6 12327361 12327673 + 1 NA Intergenic LTR34|LTR|ERV1 37156 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 140.5-23 chr8 129011376 129011588 + 1 NA Intergenic Intergenic -45481 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 227.5-6 chr12 32087991 32088434 + 1 NA Intergenic Intergenic -18595 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 364.5-17 chr20 48750289 48750654 + 1 NA intron (NM_020820, intron 1 of 39) L2b|LINE|L2 77528 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 172.5-12 chr20 49388423 49388702 + 1 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 94106 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 257.5-3 chr1 101842562 101842901 + 1 NA intron (NM_058170, intron 1 of 5) L3|LINE|CR1 4349 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 159.5-25 chr5 107652003 107652263 + 1 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 18804 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 336.5-2 chr1 74569847 74570359 + 1 NA 3' UTR (NM_001002912, exon 15 of 15) 3' UTR (NM_001002912, exon 15 of 15) -7327 NR_121671 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 291.5-8 chr16 26850892 26851268 + 1 NA Intergenic L1ME2|LINE|L1 -215847 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 141.5-9 chr14 61222220 61222408 + 1 NA Intergenic Intergenic 59024 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 190.5-18 chr8 137964415 137964702 + 1 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 118987 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 255.5-10 chr17 58045867 58046361 + 1 NA Intergenic MER112|DNA|hAT-Charlie 37090 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 352.5-9 chr14 21443871 21444410 + 1 NA intron (NM_001170629, intron 1 of 37) MIRb|SINE|MIR -6865 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 247.5-5 chr1 194217012 194217444 + 1 NA Intergenic MSTC|LTR|ERVL-MaLR 912483 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 233.5-20 chr3 79136845 79137098 + 1 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -117512 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 328.5-21 chr2 85882580 85882969 + 1 NA intron (NM_001354229, intron 1 of 7) AluSz|SINE|Alu 4775 NM_001354238 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 142.5-3 chr1 188224966 188225194 + 1 NA Intergenic L1MA3|LINE|L1 781452 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 272.5-6 chr11 3068859 3069336 + 1 NA Intergenic AluSp|SINE|Alu -11674 NM_001014437 833 Hs.274873 NM_001751 ENSG00000110619 CARS CARS1|CYSRS|MGC:11246 cysteinyl-tRNA synthetase protein-coding 207.5-25 chr3 196673866 196674267 + 1 NA Intergenic Intergenic 34372 NM_198565 375387 Hs.702186 NM_198565 ENSG00000174004 NRROS ELLP3030|GARPL1|LRRC33|UNQ3030 negative regulator of reactive oxygen species protein-coding 241.5-31 chr6 22266351 22266781 + 1 NA Intergenic AluY|SINE|Alu 30470 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 190.5-3 chr10 89906521 89906756 + 1 NA intron (NR_149079, intron 1 of 1) L1PA13|LINE|L1 18504 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 163.5-7 chr2 70213737 70214025 + 1 NA intron (NR_147232, intron 10 of 10) AluSz6|SINE|Alu -22862 NM_017880 54980 Hs.720049 NM_017880 ENSG00000115998 C2orf42 - chromosome 2 open reading frame 42 protein-coding 222.5-17 chr21 30657166 30657529 + 1 NA Intergenic L1MA5|LINE|L1 14483 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 291.5-18 chr6 55521102 55521508 + 1 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 57909 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 252.5-3 chr10 29749569 29749894 + 1 NA Intergenic Intergenic -12795 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 439.5-12 chr15 74473853 74474292 + 1 NA intron (NR_120377, intron 2 of 3) (TTAT)n|Simple_repeat|Simple_repeat 12807 NR_038449 440288 Hs.611046 NR_038448 ENSG00000247240 UBL7-AS1 - UBL7 antisense RNA 1 (head to head) ncRNA 306.5-14 chr14 72281301 72281758 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -235291 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 213.5-22 chr20 2545762 2546113 + 1 NA intron (NM_080751, intron 2 of 19) A-rich|Low_complexity|Low_complexity 9330 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 115.5-12 chr3 55451646 55451870 + 1 NA Intergenic L1MEd|LINE|L1 29640 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 205.5-2 chr1 113118086 113118389 + 1 NA intron (NM_014813, intron 16 of 17) intron (NM_014813, intron 16 of 17) 45039 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 292.5-30 chr8 16425181 16425590 + 1 NA Intergenic L1M1|LINE|L1 -232594 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 129.5-6 chr11 56608679 56608887 + 1 NA Intergenic Intergenic 4719 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 277.5-9 chr13 65868112 65868427 + 1 NA intron (NR_132362, intron 1 of 2) intron (NR_132362, intron 1 of 2) 2222 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 202.5-30 chr8 53832202 53832543 + 1 NA intron (NM_213620, intron 3 of 13) intron (NM_213620, intron 3 of 13) 10670 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 234.5-9 chr14 73782075 73782344 + 1 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 4999 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 328.5-32 chr7 13117822 13118226 + 1 NA Intergenic Intergenic 430391 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 325.5-34 chr9 23236242 23236705 + 1 NA Intergenic Intergenic 435926 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 135.5-6 chr20 11672400 11672591 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 198220 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 143.5-13 chr22 22102040 22102268 + 1 NA Intergenic AluJb|SINE|Alu -58220 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 313.5-20 chr2 160204315 160204889 + 1 NA Intergenic Intergenic -4289 NM_001282354 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 311.5-6 chr1 218071707 218072242 + 1 NA Intergenic AluSp|SINE|Alu 28469 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 256.5-19 chr2 77961751 77962196 + 1 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -6947 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 234.5-33 chr9 30969103 30969483 + 1 NA Intergenic Intergenic 412197 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 237.5-15 chr3 96365979 96366347 + 1 NA Intergenic L1MEc|LINE|L1 6199 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 127.5-8 chr5 23398774 23399023 + 1 NA Intergenic MER31-int|LTR|ERV1 -108711 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 395.5-32 chr8 105239599 105240278 + 1 NA Intergenic MamGyp-int|LTR|Gypsy -78500 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 184.5-13 chr18 55575404 55575735 + 1 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) 10550 NM_001348220 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 118.5-9 chr20 31179156 31179330 + 1 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -78421 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 132.5-10 chr2 134649313 134649526 + 1 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 69581 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 178.5-6 chr19 11593041 11593275 + 1 NA Intergenic AluSz|SINE|Alu -4325 NM_001290085 199692 Hs.526665 NM_145295 ENSG00000198551 ZNF627 - zinc finger protein 627 protein-coding 149.5-2 chr1 216890807 216891016 + 1 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 48762 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 159.5-5 chr10 48913530 48913765 + 1 NA exon (NM_001006939, exon 1 of 2) exon (NM_001006939, exon 1 of 2) 588 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 269.5-29 chr22 45106465 45106953 + 1 NA Intergenic Intergenic 45875 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 167.5-12 chr2 122678102 122678376 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack 395242 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 185.5-25 chr4 33311959 33312231 + 1 NA Intergenic Intergenic 727798 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 260.5-27 chr5 34813438 34813863 + 1 NA exon (NM_001145521, exon 12 of 19) exon (NM_001145521, exon 12 of 19) -25514 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 169.5-10 chr2 217657734 217658065 + 1 NA intron (NR_026597, intron 1 of 12) MER5A|DNA|hAT-Charlie 98694 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 250.5-32 chr5 105157152 105157571 + 1 NA Intergenic Intergenic 57887 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 186.5-9 chr14 68229663 68229977 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 398967 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 250.5-13 chr14 100077151 100077635 + 1 NA intron (NM_016337, intron 1 of 13) L2c|LINE|L2 11971 NM_016337 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 172.5-19 chr8 96827575 96827915 + 1 NA intron (NM_016134, intron 2 of 7) MIRc|SINE|MIR 182503 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 200.5-10 chr11 28902649 28902951 + 1 NA Intergenic Intergenic -425252 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 221.5-27 chr8 28703828 28704126 + 1 NA intron (NR_073468, intron 1 of 4) intron (NR_073468, intron 1 of 4) 2476 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 362.5-12 chr15 34152719 34153125 + 1 NA exon (NM_024713, exon 4 of 10) exon (NM_024713, exon 4 of 10) 50839 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 176.5-7 chr19 50408570 50408816 + 1 NA intron (NR_046402, intron 14 of 25) intron (NR_046402, intron 14 of 25) 9841 NM_001308632 5424 Hs.279413 NM_002691 ENSG00000062822 POLD1 CDC2|CRCS10|MDPL|POLD DNA polymerase delta 1, catalytic subunit protein-coding 419.5-13 chr20 19320674 19321151 + 1 NA intron (NM_020689, intron 2 of 16) MER2|DNA|TcMar-Tigger -36316 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 229.5-19 chr2 210364133 210364508 + 1 NA intron (NR_110606, intron 1 of 4) L1PA15-16|LINE|L1 39608 NR_110604 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 147.5-10 chr2 183872943 183873184 + 1 NA Intergenic HAL1|LINE|L1 -505912 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 297.5-7 chr13 45804606 45805120 + 1 NA intron (NM_198849, intron 1 of 1) L1PA16|LINE|L1 46890 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 318.5-3 chr10 108906450 108906870 + 1 NA Intergenic Intergenic -837367 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 221.5-25 chr6 144600501 144600799 + 1 NA intron (NM_007124, intron 50 of 73) Tigger1|DNA|TcMar-Tigger 194995 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 248.5-4 chr1 200511626 200512086 + 1 NA Intergenic AluY|SINE|Alu -101820 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 233.5-26 chr6 19929055 19929460 + 1 NA Intergenic Intergenic 91887 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 328.5-8 chr11 82714448 82714877 + 1 NA Intergenic Intergenic 19202 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 364.5-19 chr3 112195028 112195503 + 1 NA intron (NM_001320531, intron 19 of 27).2 L1M4|LINE|L1 61842 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 231.5-16 chr2 233557035 233557453 + 1 NA intron (NM_001365479, intron 4 of 31) intron (NM_001365479, intron 4 of 31) 8329 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 215.5-40 chr7 92838301 92838670 + 1 NA intron (NR_110088, intron 1 of 1) intron (NR_110088, intron 1 of 1) -1858 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 223.5-40 chr8 60655912 60656278 + 1 NA Intergenic Intergenic -22645 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 229.5-32 chr4 96847770 96848148 + 1 NA Intergenic Intergenic -518967 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 267.5-2 chr1 49807646 49808028 + 1 NA intron (NM_001323575, intron 2 of 12) MLT1A0|LTR|ERVL-MaLR 216117 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 219.5-27 chr3 114765166 114765489 + 1 NA intron (NM_001164343, intron 4 of 11) MLT1C|LTR|ERVL-MaLR -6220 NM_001164344 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 173.5-16 chr3 44447216 44447498 + 1 NA exon (NM_181489, exon 8 of 8) exon (NM_181489, exon 8 of 8) 19435 NR_144436 100506319 Hs.180744 NR_144436 ENSG00000283036 LINC01988 - long intergenic non-protein coding RNA 1988 ncRNA 182.5-22 chr4 58039815 58040111 + 1 NA Intergenic Intergenic 496365 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 113.5-9 chr21 15956800 15956957 + 1 NA Intergenic L1MB7|LINE|L1 -113610 NR_136541 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 331.5-29 chr9 125894490 125895068 + 1 NA intron (NR_024122, intron 2 of 7) intron (NR_024122, intron 2 of 7) 146596 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 152.5-24 chr6 73339560 73339790 + 1 NA Intergenic Intergenic 14601 NM_001025290 340168 Hs.125331 NM_001025290 ENSG00000203909 DPPA5 ESG1 developmental pluripotency associated 5 protein-coding 195.5-28 chr5 169320887 169321152 + 1 NA Intergenic Intergenic -19880 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 230.5-24 chr17 71279342 71279749 + 1 NA Intergenic Intergenic -77366 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 243.5-4 chr10 34594878 34595303 + 1 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 220206 NM_001184785 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 229.5-41 chr7 41928798 41929084 + 1 NA Intergenic Intergenic -225851 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 131.5-11 chr14 76191223 76191356 + 1 NA intron (NM_001322028, intron 8 of 9) intron (NM_001322028, intron 8 of 9) 36935 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 259.5-32 chr4 97850561 97850887 + 1 NA intron (NM_174952, intron 8 of 10) MLT1J|LTR|ERVL-MaLR 292752 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 288.5-4 chr1 110526440 110526796 + 1 NA Intergenic Intergenic -7443 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 115.5-13 chr3 132213424 132213568 + 1 NA Intergenic Intergenic -103911 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 188.5-26 chr5 164887463 164887774 + 1 NA Intergenic L1MC5|LINE|L1 417339 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 357.5-9 chr17 41200114 41200624 + 1 NA Intergenic L1MD1|LINE|L1 10482 NM_001190460 728318 Hs.727478 NM_001190460 ENSG00000240542 KRTAP9-1 KAP9.1|KRTAP9L3 keratin associated protein 9-1 protein-coding 129.5-11 chr2 81699351 81699500 + 1 NA Intergenic Intergenic -232479 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 227.5-7 chr14 55940991 55941411 + 1 NA Intergenic Intergenic -144527 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 232.5-32 chr9 25319516 25319911 + 1 NA Intergenic L1PA10|LINE|L1 359145 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 120.5-18 chr6 136305617 136305854 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -15884 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 199.5-4 chr10 73839909 73840174 + 1 NA intron (NR_160263, intron 11 of 21) intron (NR_160263, intron 11 of 21) -28221 NR_160743 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|N-HSST 2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 264.5-15 chr17 68678850 68679343 + 1 NA non-coding (NR_110825, exon 5 of 5) non-coding (NR_110825, exon 5 of 5) 50942 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 320.5-24 chr4 77201058 77201617 + 1 NA Intergenic Intergenic 44130 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 168.5-27 chr7 1687501 1687784 + 1 NA promoter-TSS (NM_001128636) promoter-TSS (NM_001128636) -477 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 316.5-26 chr7 129563930 129564489 + 1 NA Intergenic HAL1|LINE|L1 -47511 NM_005011 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 124.5-9 chr20 62609458 62609687 + 1 NA Intergenic Intergenic -32931 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 142.5-13 chr4 53694845 53695124 + 1 NA promoter-TSS (NR_125918) promoter-TSS (NR_125918) -917 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 289.5-33 chr5 124346353 124346742 + 1 NA intron (NR_125774, intron 4 of 5) AluJb|SINE|Alu 91973 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 193.5-23 chr4 53429787 53430063 + 1 NA intron (NM_001134938, intron 10 of 14) L1MA7|LINE|L1 52272 NM_001134937 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 241.5-45 chrX 152832853 152833095 + 1 NA intron (NM_001129765, intron 2 of 8) Tigger2a|DNA|TcMar-Tigger 1911 NM_015922 50814 Hs.57698 NM_015922 ENSG00000147383 NSDHL H105E3|SDR31E1|XAP104 NAD(P) dependent steroid dehydrogenase-like protein-coding 183.5-14 chr16 85126804 85127046 + 1 NA Intergenic Intergenic -10225 NR_033984 400548 Hs.592054 NR_033984 ENSG00000278214 LINC02139 - long intergenic non-protein coding RNA 2139 ncRNA 287.5-8 chr16 29824895 29825377 + 1 NA intron (NM_005115, intron 1 of 14) intron (NM_005115, intron 1 of 14) 4674 NM_005115 9961 Hs.632177 NM_005115 ENSG00000013364 MVP LRP|VAULT1 major vault protein protein-coding 216.5-7 chr10 26502655 26503052 + 1 NA intron (NM_019043, intron 5 of 14) intron (NM_019043, intron 5 of 14) 64512 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 386.5-8 chr14 29319936 29320604 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -534483 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 370.5-11 chr18 55798358 55798831 + 1 NA Intergenic L1PA5|LINE|L1 -16869 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 257.5-27 chr3 101150630 101150988 + 1 NA Intergenic MER70C|LTR|ERVL -157319 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 380.5-26 chr7 71061463 71062019 + 1 NA Intergenic Intergenic -70403 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 120.5-2 chr1 70140974 70141133 + 1 NA 3' UTR (NM_001366841, exon 27 of 27) 3' UTR (NM_001366841, exon 27 of 27) 64526 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 341.5-8 chr12 1098115 1098763 + 1 NA intron (NR_027948, intron 3 of 19) L2a|LINE|L2 70691 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 186.5-27 chr7 113469093 113469457 + 1 NA Intergenic L1MC3|LINE|L1 -350693 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 250.5-38 chr7 39587028 39587405 + 1 NA intron (NM_001282446, intron 2 of 2) AluSz|SINE|Alu 20812 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 258.5-8 chr18 2823173 2823431 + 1 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat -23704 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 134.5-24 chr8 126584239 126584491 + 1 NA Intergenic L2c|LINE|L2 -25887 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 173.5-26 chr8 137505223 137505517 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -91782 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 245.5-22 chr3 192418345 192418607 + 1 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -9427 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 300.5-7 chr10 62231483 62231885 + 1 NA intron (NM_145307, intron 6 of 11) intron (NM_145307, intron 6 of 11) 37160 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 206.5-16 chr14 71312539 71312843 + 1 NA Intergenic L2|LINE|L2 -7785 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 117.5-15 chr3 29315476 29315659 + 1 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 34255 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 253.5-35 chr9 37310164 37310591 + 1 NA intron (NR_110317, intron 4 of 7) intron (NR_110317, intron 4 of 7) -112319 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 118.5-2 chr10 52661830 52661999 + 1 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 93490 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 374.5-22 chr5 13489668 13490287 + 1 NA Intergenic L1PA15|LINE|L1 454503 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 129.5-19 chr6 105592308 105592437 + 1 NA Intergenic Intergenic -189290 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 235.5-17 chr20 41192644 41192974 + 1 NA intron (NM_015035, intron 3 of 3) L1MA4A|LINE|L1 23786 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 206.5-18 chr15 53070689 53071045 + 1 NA Intergenic Intergenic -45498 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 232.5-4 chr1 194943413 194943746 + 1 NA Intergenic L1MC2|LINE|L1 1145136 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 338.5-28 chr6 69546825 69547408 + 1 NA Intergenic Intergenic 249350 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 265.5-28 chr4 128597453 128597750 + 1 NA Intergenic Intergenic 169585 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 154.5-24 chr7 1076442 1076712 + 1 NA intron (NM_001134395, intron 2 of 4) intron (NM_001134395, intron 2 of 4) -10230 NM_001039966 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 229.5-27 chr3 131914227 131914586 + 1 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 71525 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 146.5-15 chr18 71646421 71646697 + 1 NA Intergenic Intergenic -67603 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 294.5-25 chr4 63118473 63118947 + 1 NA Intergenic Intergenic -956945 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 161.5-13 chr21 17100766 17101016 + 1 NA Intergenic Intergenic -337999 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 260.5-19 chr19 57381504 57382011 + 1 NA Intergenic AluSc8|SINE|Alu -8093 NM_152909 147694 Hs.126905 NM_152909 ENSG00000188785 ZNF548 - zinc finger protein 548 protein-coding 145.5-5 chr11 19790755 19790950 + 1 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -30769 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 206.5-10 chr13 22704515 22704842 + 1 NA Intergenic Intergenic 193503 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 181.5-12 chr14 86873080 86873337 + 1 NA Intergenic Intergenic -32570 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 245.5-28 chr5 146958091 146958441 + 1 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -38760 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 330.5-19 chr19 50002095 50002607 + 1 NA intron (NM_016440, intron 5 of 14) intron (NM_016440, intron 5 of 14) 23021 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 208.5-3 chr10 32704675 32705045 + 1 NA intron (NM_001321115, intron 25 of 43) L1PA4|LINE|L1 196612 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 228.5-13 chr15 93452869 93453217 + 1 NA Intergenic Intergenic 246977 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 356.5-32 chr6 64481331 64481811 + 1 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 674735 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 224.5-33 chr9 75470532 75470938 + 1 NA Intergenic Intergenic 382221 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 239.5-11 chr2 83343687 83344131 + 1 NA Intergenic L1ME1|LINE|L1 -178905 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 142.5-7 chr2 57432639 57432891 + 1 NA Intergenic Intergenic -474886 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 149.5-19 chr8 136854490 136854739 + 1 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 323816 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 168.5-18 chr3 22057435 22057733 + 1 NA Intergenic AluSx|SINE|Alu 100445 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 310.5-4 chr10 63689264 63689574 + 1 NA Intergenic Arthur1C|DNA|hAT-Tip100 -167529 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 214.5 chr1 224460844 224461181 + 1 NA intron (NM_001322302, intron 2 of 6) AluSx1|SINE|Alu 26163 NM_001322302 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 126.5-9 chr4 36282805 36282966 + 1 NA intron (NM_001136536, intron 1 of 8) intron (NM_001136536, intron 1 of 8) 1269 NR_160267 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 130.5-17 chr3 26583894 26584077 + 1 NA Intergenic Intergenic -38821 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 312.5-26 chr5 146550899 146551290 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -34981 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 164.5-32 chr9 677320 677633 + 1 NA intron (NM_001354333, intron 2 of 11) intron (NM_001354333, intron 2 of 11) -9291 NM_001354335 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 147.5-20 chr8 130760561 130760743 + 1 NA Intergenic Intergenic 280257 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 170.5-11 chr17 57937970 57938183 + 1 NA intron (NM_001271875, intron 1 of 10) MIR|SINE|MIR 17336 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 321.5-7 chr10 43860751 43861167 + 1 NA intron (NR_038268, intron 1 of 4) intron (NR_038268, intron 1 of 4) 1548 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 133.5-16 chr3 15524524 15524714 + 1 NA Intergenic L1ME1|LINE|L1 -2913 NM_005677 8292 Hs.146735 NM_005677 ENSG00000206561 COLQ CMS5|EAD collagen like tail subunit of asymmetric acetylcholinesterase protein-coding 288.5-27 chr20 56646489 56646950 + 1 NA Intergenic L2a|LINE|L2 17413 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 277.5-2 chr1 49953910 49954244 + 1 NA intron (NM_001323575, intron 1 of 12) AluJr|SINE|Alu 69877 NM_032785 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 156.5-9 chr18 45248715 45248875 + 1 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 35800 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 195.5-14 chr17 69366822 69367059 + 1 NA Intergenic AluSp|SINE|Alu -39807 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 175.5-8 chr15 70901982 70902249 + 1 NA intron (NM_017691, intron 4 of 15) intron (NM_017691, intron 4 of 15) 9672 NM_001199018 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 172.5-22 chr8 132571240 132571445 + 1 NA non-coding (NR_135909, exon 11 of 11) non-coding (NR_135909, exon 11 of 11) -9863 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 183.5-10 chr14 47757514 47757801 + 1 NA Intergenic AluJb|SINE|Alu 3447 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 235.5-24 chr6 3885245 3885602 + 1 NA Intergenic Intergenic 36050 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 250.5-36 chr6 159866660 159867107 + 1 NA Intergenic Intergenic -24105 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 155.5 chr1 77473299 77473545 + 1 NA intron (NM_012093, intron 8 of 13) L3|LINE|CR1 190335 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 240.5-26 chr7 53321667 53322069 + 1 NA Intergenic MER39B|LTR|ERV1 286235 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 306.5 chr1 56199690 56200183 + 1 NA Intergenic Intergenic -215027 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 308.5-2 chr1 39877755 39878269 + 1 NA intron (NM_017646, intron 1 of 10) intron (NM_017646, intron 1 of 10) 5492 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 115.5-21 chr8 53779276 53779411 + 1 NA intron (NM_213620, intron 9 of 13) L1MEf|LINE|L1 63699 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 158.5-22 chr7 38174916 38175081 + 1 NA Intergenic L1MB5|LINE|L1 -3247 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 132.5-17 chr5 171486189 171486417 + 1 NA Intergenic Intergenic 66656 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 265.5-33 chr5 107457799 107458279 + 1 NA intron (NM_001962, intron 1 of 4) MIRb|SINE|MIR 212898 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 136.5-18 chr6 132203780 132203996 + 1 NA Intergenic L1ME3Cz|LINE|L1 69910 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 135.5-10 chr4 137966584 137966749 + 1 NA Intergenic MER4CL34|LTR|ERV1 -122348 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 113.5 chr1 2113480 2113664 + 1 NA intron (NM_001033582, intron 1 of 14) intron (NM_001033582, intron 1 of 14) 8856 NM_001033582 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 284.5-10 chr11 40882191 40882643 + 1 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 577219 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 283.5-24 chr3 25027668 25028102 + 1 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 198562 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 219.5-35 chr7 2976215 2976526 + 1 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 67497 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 383.5-12 chr2 65799317 65799884 + 1 NA Intergenic Intergenic -367001 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 234.5-19 chr20 46756231 46756591 + 1 NA Intergenic L1ME1|LINE|L1 46762 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 198.5-20 chr4 53752110 53752368 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 56338 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 234.5-8 chr13 33040800 33041139 + 1 NA intron (NM_004795, intron 1 of 4) L2|LINE|L2 24546 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 117.5-21 chr8 69182963 69183127 + 1 NA Intergenic L2a|LINE|L2 -78855 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 171.5-19 chr3 193829413 193829613 + 1 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 14496 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 197.5-35 chr6 35281434 35281795 + 1 NA intron (NM_001292032, intron 2 of 12) intron (NM_001292032, intron 2 of 12) -16204 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 170.5-4 chr10 71465947 71466170 + 1 NA intron (NM_052836, intron 3 of 12) intron (NM_052836, intron 3 of 12) 45862 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 134.5-13 chr3 116347333 116347544 + 1 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -12586 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 148.5-15 chr2 161874303 161874594 + 1 NA intron (NM_001354460, intron 9 of 27) intron (NM_001354460, intron 9 of 27) 199767 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 209.5-10 chr12 110971130 110971505 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -13499 NR_135002 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 194.5-16 chr22 44134197 44134503 + 1 NA intron (NM_001243386, intron 6 of 11) intron (NM_001243386, intron 6 of 11) -38606 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 423.5-19 chr2 117548365 117549020 + 1 NA Intergenic Intergenic -265999 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 200.5-3 chr1 237848119 237848319 + 1 NA Intergenic AluSc|SINE|Alu -13956 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 308.5 chr1 9421717 9422205 + 1 NA Intergenic Intergenic 6955 NR_104623 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 283.5-17 chr2 37785609 37786067 + 1 NA Intergenic Intergenic 43873 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 218.5-24 chr4 166074628 166074892 + 1 NA intron (NM_012464, intron 16 of 20) intron (NM_012464, intron 16 of 20) 201523 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 151.5-2 chr1 161109736 161109911 + 1 NA intron (NM_012394, intron 1 of 3) AluSx1|SINE|Alu 8214 NM_012394 5202 Hs.492516 NM_012394 ENSG00000143256 PFDN2 PFD2 prefoldin subunit 2 protein-coding 234.5-4 chr10 33277572 33277983 + 1 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 56890 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 218.5-21 chr3 56957604 56957921 + 1 NA intron (NR_046572, intron 2 of 2) L2a|LINE|L2 17722 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 149.5-5 chr16 74818608 74818822 + 1 NA Intergenic L1MA5A|LINE|L1 -43895 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 250.5-26 chr3 70169290 70169774 + 1 NA Intergenic Intergenic 143106 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 216.5-11 chr12 3763123 3763418 + 1 NA Intergenic L1M4a2|LINE|L1 -10161 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 199.5-38 chr9 117123289 117123587 + 1 NA intron (NM_014010, intron 3 of 21) MIR|SINE|MIR 57763 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 257.5-26 chr3 99143505 99143818 + 1 NA Intergenic Intergenic -241966 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 264.5-3 chr1 173056546 173057031 + 1 NA Intergenic Intergenic -5825 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 307.5-21 chr20 33059802 33060247 + 1 NA exon (NM_182658, exon 4 of 15) exon (NM_182658, exon 4 of 15) 4693 NM_182658 359710 Hs.472442 NM_182658 ENSG00000186190 BPIFB3 C20orf185|LPLUNC3|RYA3 BPI fold containing family B member 3 protein-coding 253.5-5 chr12 5334043 5334446 + 1 NA Intergenic L1PA17|LINE|L1 -91093 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 215.5-34 chr6 44628792 44629077 + 1 NA Intergenic Intergenic -77053 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 207.5-35 chr7 89821500 89821856 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -297722 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 140.5-6 chr10 104806853 104807055 + 1 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -140738 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 236.5-13 chr13 92540199 92540604 + 1 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 50238 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 203.5-15 chr2 85414404 85414607 + 1 NA promoter-TSS (NM_001256139) promoter-TSS (NM_001256139) -431 NM_001256139 822 Hs.516155 NM_001747 ENSG00000042493 CAPG AFCP|HEL-S-66|MCP capping actin protein, gelsolin like protein-coding 295.5 chr1 104644412 104644792 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 571579 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 158.5-21 chr7 33941893 33942180 + 1 NA intron (NM_133468, intron 4 of 15) intron (NM_133468, intron 4 of 15) 36497 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 165.5-14 chr3 187570169 187570487 + 1 NA Intergenic MIRb|SINE|MIR 100066 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 276.5-2 chr1 83065937 83066414 + 1 NA intron (NR_147074, intron 5 of 10) MIR|SINE|MIR -79967 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 126.5-15 chr8 78903976 78904143 + 1 NA Intergenic Intergenic 66530 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 184.5-23 chr7 24447034 24447356 + 1 NA Intergenic Intergenic -126257 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 130.5-10 chr17 73134804 73135023 + 1 NA Intergenic Intergenic -30097 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 335.5-9 chr14 59139279 59139789 + 1 NA Intergenic Intergenic -49133 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 273.5-18 chr21 34694277 34694745 + 1 NA intron (NM_053277, intron 1 of 5) MSTA|LTR|ERVL-MaLR 25517 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 142.5-8 chr2 195812045 195812209 + 1 NA intron (NM_018897, intron 51 of 64) LTR8A|LTR|ERV1 154901 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 158.5-2 chr1 163690207 163690496 + 1 NA Intergenic L1MC2|LINE|L1 -267160 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 135.5-17 chr8 117308179 117308420 + 1 NA Intergenic Intergenic 173304 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 177.5-14 chr2 54132065 54132311 + 1 NA intron (NM_001320588, intron 1 of 3) LTR101_Mam|LTR|ERVL 8905 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 168.5-33 chr9 35432836 35433031 + 1 NA intron (NR_003582, intron 2 of 10) L2b|LINE|L2 26178 NR_003582 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 142.5-15 chr5 24118436 24118628 + 1 NA intron (NR_131245, intron 4 of 4) L1MD2|LINE|L1 167184 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 223.5-28 chr3 155083863 155084285 + 1 NA intron (NM_001354644, intron 1 of 3) intron (NM_001354644, intron 1 of 3) 4063 NM_001354644 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 248.5 chr1 99737560 99737907 + 1 NA intron (NM_001013660, intron 7 of 16) (TTTG)n|Simple_repeat|Simple_repeat -24780 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 267.5-30 chr9 133337622 133338034 + 1 NA TTS (NM_133640).2 TTS (NM_133640).2 -1640 NM_006753 6838 Hs.274430 NM_006753 ENSG00000148296 SURF6 RRP14 surfeit 6 protein-coding 280.5-25 chr4 64053636 64054127 + 1 NA Intergenic AluSg|SINE|Alu 355569 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 298.5-12 chr17 44971810 44972333 + 1 NA Intergenic Intergenic -3768 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 265.5-30 chr5 27464505 27465008 + 1 NA Intergenic Intergenic -7536 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 161.5-26 chr8 136515281 136515526 + 1 NA Intergenic AluSx1|SINE|Alu -15395 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 187.5-26 chr6 154604261 154604572 + 1 NA Intergenic HERVL40-int|LTR|ERVL -93731 NM_001368117 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 377.5-5 chr13 94181216 94181751 + 1 NA intron (NR_046535, intron 3 of 3) MIR3|SINE|MIR 6508 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 377.5-4 chr13 86106672 86107228 + 1 NA Intergenic L1MA8|LINE|L1 -307531 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 240.5-10 chr2 126700083 126700526 + 1 NA Intergenic Intergenic 44146 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 124.5-7 chr2 67288966 67289130 + 1 NA intron (NR_110564, intron 4 of 4) MER105|DNA|hAT-Charlie -73729 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 148.5-19 chr4 15576984 15577136 + 1 NA intron (NM_001080522, intron 30 of 37) AluJo|SINE|Alu 78297 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 231.5-7 chr16 56019127 56019455 + 1 NA Intergenic Intergenic -63260 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 299.5-17 chr18 3943791 3944251 + 1 NA intron (NM_001242761, intron 3 of 11) MLT1B|LTR|ERVL-MaLR -18332 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 154.5-21 chr5 156251063 156251328 + 1 NA Intergenic Intergenic -75562 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 160.5-7 chr10 82483842 82484029 + 1 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -251015 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 302.5-38 chr7 140464276 140464773 + 1 NA intron (NM_013446, intron 2 of 7) AluSp|SINE|Alu 14981 NM_013446 23608 Hs.744883 NM_013446 ENSG00000133606 MKRN1 RNF61 makorin ring finger protein 1 protein-coding 264.5-17 chr18 65886832 65887235 + 1 NA 3' UTR (NM_004361, exon 12 of 12) 3' UTR (NM_004361, exon 12 of 12) 136021 NM_001317214 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 112.5-13 chr8 88810801 88810914 + 1 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -483374 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 187.5-27 chr6 165406653 165406945 + 1 NA intron (NM_006661, intron 14 of 22) MLT2B3|LTR|ERVL -97194 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 175.5-16 chr2 183552221 183552517 + 1 NA Intergenic (AATT)n|Simple_repeat|Simple_repeat 427926 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 168.5-34 chr9 94061214 94061382 + 1 NA intron (NM_177995, intron 1 of 9) MSTA-int|LTR|ERVL-MaLR -23131 NM_152422 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 146.5-23 chr20 51595251 51595504 + 1 NA Intergenic Intergenic -32538 NM_001258292 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 363.5-18 chr20 55016810 55017395 + 1 NA Intergenic L1MEd|LINE|L1 -405941 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 228.5-25 chr3 128520646 128521084 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 13030 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 116.5-19 chr6 146873449 146873680 + 1 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -69740 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 119.5-10 chr20 17181702 17181877 + 1 NA Intergenic L1PA6|LINE|L1 -44318 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 276.5-14 chr16 57827799 57828177 + 1 NA Intergenic MIR|SINE|MIR 17351 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 412.5-16 chr2 139745835 139746326 + 1 NA Intergenic Intergenic 840605 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 361.5-5 chr13 42576185 42576546 + 1 NA intron (NM_003701, intron 1 of 4) intron (NM_003701, intron 1 of 4) 2213 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 307.5-42 chr8 135705816 135706218 + 1 NA Intergenic Intergenic 248561 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 161.5-22 chr8 97935639 97935902 + 1 NA intron (NM_002380, intron 3 of 18) AluJo|SINE|Alu 66706 NM_002380 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 279.5-6 chr16 5579332 5579724 + 1 NA Intergenic Intergenic 36722 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 202.5-28 chr7 137803315 137803676 + 1 NA intron (NM_001321708, intron 1 of 32) intron (NM_001321708, intron 1 of 32) 42837 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 195.5-33 chr8 124935296 124935580 + 1 NA Intergenic Intergenic -6570 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 171.5-12 chr2 116262759 116263020 + 1 NA Intergenic L1MD1|LINE|L1 919074 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 192.5-15 chr2 125191475 125191732 + 1 NA Intergenic L1PREC2|LINE|L1 926382 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 273.5-4 chr12 121419121 121419582 + 1 NA intron (NM_194271, intron 4 of 6) Tigger3a|DNA|TcMar-Tigger 19233 NM_194271 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 217.5-19 chr2 167954460 167954785 + 1 NA 3' UTR (NM_013233, exon 18 of 18) 3' UTR (NM_013233, exon 18 of 18) -13478 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 145.5-4 chr1 180109386 180109627 + 1 NA intron (NM_014810, intron 37 of 37) L3|LINE|CR1 -45327 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 304.5-24 chr18 447287 447741 + 1 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 53187 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 258.5-10 chr2 76051886 76052209 + 1 NA Intergenic Intergenic -341132 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 580.5-8 chr6 153287966 153289010 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -157206 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 231.5-35 chr8 74060367 74060785 + 1 NA Intergenic L2c|LINE|L2 69184 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 261.5-37 chr8 110613677 110614014 + 1 NA Intergenic LTR16|LTR|ERVL 413588 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 243.5-20 chr20 61503394 61503866 + 1 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) 4209 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 346.5-13 chr2 60255184 60255673 + 1 NA Intergenic L1MA5|LINE|L1 127608 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 300.5-37 chr7 99873851 99874398 + 1 NA Intergenic L1PA5|LINE|L1 2909 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 213.5 chr1 52476148 52476473 + 1 NA intron (NM_001009881, intron 12 of 29) intron (NM_001009881, intron 12 of 29) 71708 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 219.5-32 chr5 144604166 144604493 + 1 NA Intergenic Intergenic 398938 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 183.5-13 chr16 27715671 27715935 + 1 NA intron (NM_015202, intron 13 of 27) L1MB7|LINE|L1 3226 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 124.5-2 chr11 131012269 131012423 + 1 NA Intergenic LTR79|LTR|ERVL -95859 NM_001347918 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 144.5-8 chr17 70877920 70878134 + 1 NA Intergenic L1MEg|LINE|L1 324152 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 270.5-14 chr19 46027303 46027752 + 1 NA Intergenic AluSx1|SINE|Alu -4474 NM_005091 8993 Hs.137583 NM_005091 ENSG00000008438 PGLYRP1 PGLYRP|PGRP|PGRP-S|PGRPS|TAG7|TNFSF3L peptidoglycan recognition protein 1 protein-coding 400.5-4 chr10 78250627 78251250 + 1 NA non-coding (NR_038985, exon 2 of 2) non-coding (NR_038985, exon 2 of 2) 2313 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 308.5-19 chr2 141635712 141636261 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 495715 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 131.5-7 chr11 18703386 18703526 + 1 NA TTS (NR_160413) TTS (NR_160413) 4677 NM_153347 144110 Hs.502100 NM_153347 ENSG00000151117 TMEM86A - transmembrane protein 86A protein-coding 262.5-3 chr12 27877145 27877561 + 1 NA Intergenic Intergenic 92623 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 230.5-9 chr10 73889569 73889958 + 1 NA Intergenic AluSz|SINE|Alu -15172 NM_172171 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 269.5-49 chr7 91989373 91989846 + 1 NA intron (NM_147185, intron 3 of 49) intron (NM_147185, intron 3 of 49) 48734 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 171.5-15 chr22 25175466 25175755 + 1 NA intron (NM_001145206, intron 6 of 10) L2b|LINE|L2 -24248 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 141.5-4 chr10 111937989 111938168 + 1 NA Intergenic Intergenic 245687 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 297.5-24 chr3 63028781 63029333 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -73631 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 218.5-14 chr17 57920438 57920796 + 1 NA intron (NM_001271875, intron 1 of 10) L1ME3G|LINE|L1 -17228 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 152.5-3 chr1 118787510 118787793 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 200692 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 131.5-20 chr22 39480334 39480563 + 1 NA intron (NM_002409, intron 1 of 1) intron (NM_002409, intron 1 of 1) -3626 NR_126469 104502417 Hs.586031 NR_126469 ENSG00000227188 MGAT3-AS1 TapSAKI MGAT3 antisense RNA 1 ncRNA 246.5-2 chr1 83000437 83000805 + 1 NA intron (NR_147074, intron 5 of 10) L1ME3G|LINE|L1 -14413 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 192.5-34 chr9 117354515 117354707 + 1 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 60446 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 318.5-12 chr17 72437387 72437755 + 1 NA intron (NR_036488, intron 1 of 3) AluSx|SINE|Alu 94760 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 150.5-3 chr10 64891194 64891412 + 1 NA Intergenic HERVL-int|LTR|ERVL 33215 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 309.5-7 chr11 83154213 83154779 + 1 NA Intergenic Intergenic -2635 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 220.5-34 chr8 42898319 42898719 + 1 NA intron (NM_032410, intron 1 of 21) intron (NM_032410, intron 1 of 21) 1541 NM_032410 84376 Hs.162852 NM_032410 ENSG00000168172 HOOK3 HK3 hook microtubule tethering protein 3 protein-coding 406.5-12 chr2 31076221 31076805 + 1 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 53127 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 164.5-3 chr1 216670250 216670457 + 1 NA intron (NM_001243506, intron 2 of 6) intron (NM_001243506, intron 2 of 6) 53076 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 196.5-20 chr2 122760101 122760381 + 1 NA Intergenic Intergenic 313240 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 132.5-20 chr8 88342675 88342929 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15319 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 155.5-14 chr5 9480031 9480196 + 1 NA intron (NM_003966, intron 1 of 22) MER20|DNA|hAT-Charlie -31220 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 131.5-9 chr12 64858792 64859011 + 1 NA intron (NM_001364838, intron 8 of 11) L2c|LINE|L2 -24873 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 384.5-25 chr8 84807584 84808101 + 1 NA intron (NM_001287244, intron 3 of 7) L1PB1|LINE|L1 101915 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 187.5-35 chr9 75427710 75428000 + 1 NA Intergenic Intergenic 339341 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 163.5-2 chr10 2052747 2053041 + 1 NA Intergenic Intergenic 23195 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 337.5-18 chr20 23433097 23433644 + 1 NA Intergenic Tigger17c|DNA|TcMar-Tigger -6315 NM_138283 128817 Hs.352134 NM_138283 ENSG00000125823 CSTL1 CTES1|RCET11|dJ322G13.4 cystatin like 1 protein-coding 198.5-17 chr22 45573785 45574177 + 1 NA intron (NM_006486, intron 14 of 16) intron (NM_006486, intron 14 of 16) 31666 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 247.5-27 chr7 94025330 94025672 + 1 NA Intergenic Intergenic -21146 NM_005868 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 220.5-38 chr9 84057679 84058021 + 1 NA Intergenic Intergenic -5593 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 112.5 chr1 36550054 36550220 + 1 NA Intergenic L1MEc|LINE|L1 -66823 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 219.5-26 chr3 79696447 79696732 + 1 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 71409 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 217.5-23 chr20 50877476 50877775 + 1 NA TTS (NM_198799) TTS (NM_198799) 32166 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 243.5-19 chr2 230003664 230003950 + 1 NA intron (NM_174899, intron 3 of 3) AluSx|SINE|Alu 65117 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 211.5-21 chr2 177612396 177612691 + 1 NA TTS (NM_152275) TTS (NM_152275) 6199 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 192.5-24 chr4 67975553 67975893 + 1 NA Intergenic L1MD|LINE|L1 -12230 NM_182606 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 204.5-10 chr12 131101901 131102236 + 1 NA intron (NM_198827, intron 15 of 24) MER103C|DNA|hAT-Charlie -62943 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 135.5-2 chr10 43637965 43638188 + 1 NA intron (NR_038867, intron 1 of 4) Tigger17a|DNA|TcMar-Tigger -5796 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 121.5-7 chr17 58983327 58983517 + 1 NA non-coding (NR_048561, exon 6 of 6) non-coding (NR_048561, exon 6 of 6) 123458 NM_001353084 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 185.5-7 chr14 68644785 68645093 + 1 NA intron (NM_001321818, intron 10 of 10) L1ME4a|LINE|L1 -16152 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 148.5-10 chr16 27673331 27673576 + 1 NA intron (NM_015202, intron 6 of 27) intron (NM_015202, intron 6 of 27) 45576 NR_147898 100128079 Hs.610277 NR_147898 LOC100128079 - uncharacterized LOC100128079 ncRNA 229.5-14 chr18 3732709 3733089 + 1 NA intron (NM_001242762, intron 3 of 9) L1MC5|LINE|L1 112459 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 227.5-36 chr9 124418400 124418809 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -3162 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 153.5-12 chr6 133445130 133445350 + 1 NA intron (NM_172103, intron 3 of 18) L1MEf|LINE|L1 203741 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 215.5-11 chr11 57604625 57604927 + 1 NA intron (NM_001032295, intron 3 of 6) AluJr4|SINE|Alu 6565 NM_001032295 710 Hs.384598 NM_000062 ENSG00000149131 SERPING1 C1IN|C1INH|C1NH|HAE1|HAE2 serpin family G member 1 protein-coding 298.5-10 chr16 2235841 2236293 + 1 NA promoter-TSS (NM_001301680) promoter-TSS (NM_001301680) -377 NM_001301680 1775 Hs.103503 NM_001374 ENSG00000167968 DNASE1L2 DNAS1L2 deoxyribonuclease 1 like 2 protein-coding 165.5-18 chr5 28469499 28469776 + 1 NA Intergenic Intergenic -181972 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 122.5-16 chr3 103518538 103518696 + 1 NA Intergenic L1PA16|LINE|L1 5499 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 336.5-25 chr7 91991849 91992389 + 1 NA intron (NM_147185, intron 3 of 49) intron (NM_147185, intron 3 of 49) 51244 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 305.5-29 chr6 844669 845229 + 1 NA Intergenic Intergenic -23549 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 299.5-25 chr3 153559528 153560003 + 1 NA intron (NR_146713, intron 4 of 6) L1P3|LINE|L1 75270 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 141.5-14 chr2 148605063 148605288 + 1 NA Intergenic Intergenic -39576 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 167.5-22 chr6 65496955 65497167 + 1 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 82743 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 245.5 chr1 98725313 98725720 + 1 NA intron (NR_033716, intron 8 of 8) L2a|LINE|L2 63795 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 175.5-10 chr2 20059804 20060081 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -8314 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 207.5-2 chr1 159405803 159406104 + 1 NA intron (NM_001363558, intron 2 of 3) intron (NM_001363558, intron 2 of 3) 8483 NM_001363558 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 254.5-36 chr22 49663940 49664354 + 1 NA Intergenic Intergenic -6628 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 305.5-4 chr10 71112016 71112321 + 1 NA Intergenic L1M3f|LINE|L1 -100402 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 218.5-26 chr5 151283930 151284244 + 1 NA exon (NM_001145017, exon 9 of 11) exon (NM_001145017, exon 9 of 11) 19679 NM_181774 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 144.5 chr10 89308817 89309018 + 1 NA 3' UTR (NM_001547, exon 2 of 2) 3' UTR (NM_001547, exon 2 of 2) 6871 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 297.5-27 chr4 58681329 58681914 + 1 NA Intergenic Intergenic -145293 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 254.5-7 chr11 78315450 78315784 + 1 NA intron (NM_080491, intron 1 of 9) L1MB3|LINE|L1 26263 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 143.5-2 chr1 167775260 167775479 + 1 NA intron (NM_024569, intron 4 of 4) intron (NM_024569, intron 4 of 4) 53387 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 191.5-23 chr8 77927903 77928160 + 1 NA Intergenic L1PB4|LINE|L1 477334 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 189.5-23 chr4 109483721 109483910 + 1 NA intron (NM_001300813, intron 5 of 24) L1MC4|LINE|L1 -4883 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 272.5-35 chr7 112961359 112961716 + 1 NA intron (NR_110162, intron 4 of 5) intron (NR_110162, intron 4 of 5) -21662 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 139.5-16 chr3 190657401 190657602 + 1 NA 3' UTR (NM_001167931, exon 12 of 12) 3' UTR (NM_001167931, exon 12 of 12) 143416 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 330.5-27 chr4 9975753 9976083 + 1 NA intron (NM_001001290, intron 6 of 12) L1PA16|LINE|L1 45579 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 233.5-25 chr5 135203484 135203840 + 1 NA intron (NR_161235, intron 3 of 5) L1MC4a|LINE|L1 44515 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 216.5-13 chr14 56876292 56876634 + 1 NA intron (NR_146411, intron 2 of 2) L2c|LINE|L2 63305 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 317.5-29 chr5 112786816 112787428 + 1 NA intron (NM_001354899, intron 6 of 14) AluSx|SINE|Alu 49237 NM_001127510 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 162.5-21 chr7 134720477 134720726 + 1 NA Intergenic Intergenic -59033 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 392.5-6 chr11 89532128 89532604 + 1 NA intron (NM_001143837, intron 2 of 20) THE1D-int|LTR|ERVL-MaLR -40147 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 164.5-11 chr16 84797500 84797745 + 1 NA Intergenic AluSx1|SINE|Alu -22363 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 183.5-18 chr2 82062661 82062918 + 1 NA Intergenic Intergenic -595843 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 335.5-20 chr2 168550479 168551143 + 1 NA intron (NM_001256126, intron 2 of 10) MER45C|DNA|hAT-Tip100 -32132 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 169.5-20 chr7 19295657 19295982 + 1 NA Intergenic Intergenic -150398 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 186.5-26 chr7 12905743 12906079 + 1 NA Intergenic L1MB8|LINE|L1 218278 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 173.5-6 chr10 75181735 75182003 + 1 NA 3' UTR (NM_144660, exon 5 of 5) 3' UTR (NM_144660, exon 5 of 5) -28285 NM_003375 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 399.5-22 chr4 57433330 57433921 + 1 NA intron (NR_125907, intron 3 of 5) intron (NR_125907, intron 3 of 5) 7753 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 123.5-17 chr8 116192502 116192747 + 1 NA intron (NR_046215, intron 4 of 13) MIRc|SINE|MIR 132435 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 245.5-4 chr10 13961597 13961911 + 1 NA intron (NM_018027, intron 2 of 24) L2b|LINE|L2 10142 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 274.5-15 chr2 182369380 182369828 + 1 NA intron (NM_005019, intron 1 of 14) L2|LINE|L2 57444 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 307.5-5 chr10 27510550 27510894 + 1 NA intron (NR_046172, intron 2 of 5) intron (NR_046172, intron 2 of 5) 6418 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 266.5-10 chr16 50281149 50281594 + 1 NA intron (NM_001114, intron 1 of 25) intron (NM_001114, intron 1 of 25) -11245 NR_106829 102465462 NR_106829 ENSG00000274969 MIR6771 hsa-mir-6771 microRNA 6771 ncRNA 138.5-12 chr3 51938105 51938258 + 1 NA exon (NM_004704, exon 3 of 15) exon (NM_004704, exon 3 of 15) 3723 NM_004704 9136 Hs.153768 NM_004704 ENSG00000114767 RRP9 RNU3IP2|U3-55K ribosomal RNA processing 9, U3 small nucleolar RNA binding protein protein-coding 321.5-26 chr6 36893423 36893818 + 1 NA intron (NM_152734, intron 1 of 7) intron (NM_152734, intron 1 of 7) 7668 NM_001286635 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 299.5-20 chr2 187850954 187851433 + 1 NA Intergenic Intergenic -296688 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 143.5-26 chr7 50770375 50770636 + 1 NA intron (NM_001001555, intron 1 of 16) intron (NM_001001555, intron 1 of 16) 12391 NM_001371009 215.5-38 chr6 69596684 69596947 + 1 NA Intergenic MLT1E3|LTR|ERVL-MaLR 199651 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 373.5 chr1 93100896 93101472 + 1 NA intron (NM_001164393, intron 1 of 12) intron (NM_001164393, intron 1 of 12) 21901 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 204.5-12 chr14 60132705 60133006 + 1 NA intron (NM_001330177, intron 10 of 10) L1MB7|LINE|L1 32543 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 119.5-9 chr20 15410849 15411017 + 1 NA intron (NM_001351663, intron 6 of 17) LTR82B|LTR|ERVL 214093 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 154.5-3 chr10 29143877 29144128 + 1 NA Intergenic Intergenic -145068 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 204.5-8 chr12 12676824 12677224 + 1 NA intron (NM_006143, intron 3 of 3) intron (NM_006143, intron 3 of 3) 19159 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 308.5-13 chr15 100574386 100574872 + 1 NA intron (NR_148018, intron 4 of 6) AluSz|SINE|Alu -15346 NR_073405 441733 Hs.12250 NR_073405 PRKXP1 - PRKX pseudogene 1 pseudo 282.5-19 chr20 24331897 24332396 + 1 NA Intergenic Intergenic 132379 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 249.5-5 chr12 1629254 1629672 + 1 NA intron (NM_032642, intron 1 of 4) intron (NM_032642, intron 1 of 4) 232 NM_032642 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 158.5-24 chr7 48442666 48442874 + 1 NA intron (NM_152701, intron 42 of 61) MER5A|DNA|hAT-Charlie 271312 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 227.5 chr1 56841748 56842177 + 1 NA Intergenic Intergenic -12808 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 235.5-5 chr1 117918305 117918744 + 1 NA intron (NM_001135589, intron 3 of 12) intron (NM_001135589, intron 3 of 12) 11097 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 194.5-25 chr5 131991315 131991641 + 1 NA intron (NM_001205251, intron 2 of 19) intron (NM_001205251, intron 2 of 19) 20180 NM_015256 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 226.5-5 chr11 113540385 113540663 + 1 NA Intergenic (GAGCA)n|Simple_repeat|Simple_repeat -65126 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 282.5-5 chr10 57443219 57443641 + 1 NA Intergenic Intergenic -138871 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 126.5-8 chr2 235788382 235788579 + 1 NA intron (NM_001037131, intron 6 of 17) (TGAGG)n|Simple_repeat|Simple_repeat -270559 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 241.5-44 chrX 152265190 152265483 + 1 NA intron (NM_000808, intron 4 of 9) L1M1|LINE|L1 -126758 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 344.5-2 chr1 82279022 82279460 + 1 NA Intergenic L2a|LINE|L2 476788 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 193.5-12 chr15 61492091 61492434 + 1 NA Intergenic Intergenic -237656 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 317.5-30 chr5 120196681 120197132 + 1 NA Intergenic Intergenic -267372 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 238.5-41 chr9 36325299 36325656 + 1 NA Intergenic Intergenic -48421 NM_001190388 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 236.5-32 chr5 126322181 126322466 + 1 NA Intergenic Intergenic -37148 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 297.5-11 chr14 83972105 83972631 + 1 NA Intergenic MLT2C1|LTR|ERVL -1299564 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 140.5-5 chr10 53088946 53089219 + 1 NA Intergenic L1PA16|LINE|L1 -317382 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 214.5-27 chr5 128491270 128491681 + 1 NA intron (NM_001999, intron 5 of 64) intron (NM_001999, intron 5 of 64) 46770 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 164.5-21 chr3 115647809 115648017 + 1 NA intron (NM_002045, intron 1 of 2) intron (NM_002045, intron 1 of 2) 24403 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 157.5-17 chr3 32967004 32967227 + 1 NA Intergenic L1M4|LINE|L1 15471 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 212.5-16 chr2 11541606 11541952 + 1 NA promoter-TSS (NM_033090) promoter-TSS (NM_033090) -907 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 199.5-32 chr6 64425772 64426051 + 1 NA intron (NM_001292009, intron 28 of 43) L2a|LINE|L2 619075 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 206.5-40 chr8 81753026 81753277 + 1 NA exon (NM_152284, exon 2 of 5) exon (NM_152284, exon 2 of 5) 20703 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 216.5-33 chr6 131330339 131330734 + 1 NA Intergenic Intergenic 80132 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 238.5-2 chr1 200012515 200012826 + 1 NA Intergenic AluSx|SINE|Alu -15040 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 187.5-16 chr20 11736518 11736743 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 134085 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 324.5-18 chr15 80401968 80402487 + 1 NA Intergenic Intergenic -2155 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 134.5-11 chr20 43916049 43916270 + 1 NA promoter-TSS (NM_001098796) promoter-TSS (NM_001098796) 29 NM_032883 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 329.5-3 chr1 119537344 119537826 + 1 NA Intergenic Intergenic -26295 NR_033781 128102 Hs.681806 NR_033781 HSD3BP4 - hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 pseudo 176.5-2 chr1 180496740 180496990 + 1 NA intron (NM_032360, intron 1 of 7) MIRb|SINE|MIR 5712 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 179.5-5 chr14 102333898 102334196 + 1 NA intron (NM_001267828, intron 3 of 7) intron (NM_001267828, intron 3 of 7) 14301 NM_018335 55778 Hs.743359 NM_018335 ENSG00000022976 ZNF839 C14orf131 zinc finger protein 839 protein-coding 120.5-20 chr8 82493809 82493941 + 1 NA Intergenic Intergenic -418229 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 205.5-33 chr8 32501846 32502183 + 1 NA intron (NM_013962, intron 1 of 4) MER31-int|LTR|ERV1 -46196 NM_013958 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 396.5-21 chr21 21508465 21509187 + 1 NA intron (NM_001352592, intron 16 of 18) (T)n|Simple_repeat|Simple_repeat 228493 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 172.5-6 chr12 66019894 66020156 + 1 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 3701 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 344.5-4 chr10 81447862 81448308 + 1 NA Intergenic AluSx|SINE|Alu -427109 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 298.5-30 chr9 115565816 115566355 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 178154 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 135.5 chr1 216595234 216595409 + 1 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 128108 NM_001243518 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 205.5-17 chr4 98383065 98383347 + 1 NA intron (NM_021159, intron 5 of 14) intron (NM_021159, intron 5 of 14) 121822 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 314.5-13 chr16 71836547 71837086 + 1 NA Intergenic Intergenic -9160 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 339.5-25 chr6 129790782 129791315 + 1 NA Intergenic L1MA10|LINE|L1 70267 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 235.5-23 chr5 63305878 63306279 + 1 NA Intergenic Intergenic 656214 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 261.5-13 chr14 76641521 76641807 + 1 NA Intergenic Intergenic -119804 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 171.5-20 chr4 55017610 55017910 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 107835 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 302.5 chr1 81262787 81263245 + 1 NA Intergenic Intergenic -43176 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 217.5-26 chr3 103579768 103580168 + 1 NA Intergenic Intergenic -55852 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 114.5-3 chr1 208922023 208922203 + 1 NA Intergenic HAL1M8|LINE|L1 -50341 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 219.5-11 chr14 85148868 85149159 + 1 NA Intergenic Intergenic -122919 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 243.5 chr1 90540598 90541019 + 1 NA Intergenic Intergenic -116942 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 187.5-19 chr3 80286946 80287252 + 1 NA Intergenic Intergenic -477798 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 164.5-15 chr2 112051802 112052051 + 1 NA Intergenic L1MC4|LINE|L1 -3343 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 123.5 chr1 247942772 247942927 + 1 NA intron (NM_001304535, intron 1 of 1) L1MB3|LINE|L1 5820 NM_001304535 284521 Hs.372936 NM_175911 ENSG00000196071 OR2L13 OR2L14 olfactory receptor family 2 subfamily L member 13 protein-coding 142.5-14 chr4 128920820 128921015 + 1 NA intron (NM_144643, intron 18 of 20) L1PA15|LINE|L1 109073 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 232.5-31 chr8 65702872 65703104 + 1 NA intron (NM_001145839, intron 4 of 6) intron (NM_001145839, intron 4 of 6) 33115 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 128.5-21 chr4 56989251 56989456 + 1 NA intron (NM_001303268, intron 2 of 23) intron (NM_001303268, intron 2 of 23) 10457 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 228.5-5 chr10 30467036 30467321 + 1 NA Intergenic Intergenic 32532 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 245.5-37 chr8 96947321 96947689 + 1 NA intron (NM_016134, intron 4 of 7) L1MEi|LINE|L1 302263 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 131.5-22 chr4 96353341 96353585 + 1 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 42760 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 125.5-11 chr7 46968941 46969132 + 1 NA Intergenic Intergenic -271914 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 181.5-19 chr20 45220431 45220735 + 1 NA promoter-TSS (NM_003008) promoter-TSS (NM_003008) -790 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 156.5-26 chr8 104831526 104831709 + 1 NA Intergenic L1M6|LINE|L1 -242593 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 217.5-18 chr18 11837369 11837691 + 1 NA intron (NM_001369387, intron 5 of 11) L1MB8|LINE|L1 -13883 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 113.5-6 chr2 114622893 114623059 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 161399 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 204.5-27 chr4 183519567 183519843 + 1 NA Intergenic Intergenic 13623 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 156.5-12 chr2 112202691 112202909 + 1 NA Intergenic L1M4|LINE|L1 52242 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 122.5-12 chr2 157263114 157263299 + 1 NA intron (NM_014568, intron 1 of 9) intron (NM_014568, intron 1 of 9) 5501 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 149.5-21 chr9 78381919 78382115 + 1 NA Intergenic Intergenic 84892 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 231.5-18 chr20 49282062 49282365 + 1 NA intron (NR_003604, intron 4 of 4) AluSg|SINE|Alu 1530 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 238.5-29 chr4 88506625 88506920 + 1 NA TTS (NM_016323) TTS (NM_016323) 17004 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 154.5-7 chr13 31569625 31569864 + 1 NA Intergenic Intergenic -169782 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 310.5-39 chr6 51357345 51357914 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -264241 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 128.5-27 chr8 105353918 105354046 + 1 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 34439 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 139.5 chr1 11349136 11349355 + 1 NA Intergenic L1MD2|LINE|L1 76047 NM_001330349 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 197.5-23 chr2 213582232 213582496 + 1 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -175703 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 138.5-13 chr3 133050186 133050382 + 1 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) 11996 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 346.5-6 chr12 76784637 76785242 + 1 NA intron (NM_015336, intron 1 of 16) HSMAR2|DNA|TcMar-Mariner 20681 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 281.5-21 chr3 128929814 128930316 + 1 NA intron (NM_001348520, intron 11 of 14) intron (NM_001348520, intron 11 of 14) 50445 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 MC1DN20|NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 115.5-20 chr7 52975595 52975786 + 1 NA Intergenic L1M5|LINE|L1 -59943 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 147.5-14 chr5 55213731 55213982 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 13459 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 127.5 chr13 50685237 50685409 + 1 NA Intergenic L1MC5|LINE|L1 -122532 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 233.5-34 chr7 150861058 150861377 + 1 NA 3' UTR (NM_001272072, exon 5 of 5) 3' UTR (NM_001272072, exon 5 of 5) 8700 NM_001272072 26 Hs.647097 NM_001091 ENSG00000002726 AOC1 ABP|ABP1|DAO|DAO1|KAO amine oxidase copper containing 1 protein-coding 129.5-8 chr17 60529289 60529444 + 1 NA Intergenic L1M1|LINE|L1 -3124 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 138.5-14 chr5 22738300 22738513 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 114938 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 147.5-7 chr14 61600682 61600829 + 1 NA intron (NR_039985, intron 1 of 2) AluJr4|SINE|Alu -30102 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 375.5-22 chr4 101282192 101282929 + 1 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) -41688 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 130.5-20 chr8 143896109 143896315 + 1 NA Intergenic L1MB7|LINE|L1 -17748 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 196.5-14 chr19 34918433 34918674 + 1 NA Intergenic LTR8A|LTR|ERV1 8273 NR_110749 102723513 Hs.149702 NR_110749 ZNF30-AS1 - ZNF30 antisense RNA 1 ncRNA 172.5-18 chr8 48692957 48693255 + 1 NA intron (NR_105002, intron 2 of 3) AluJb|SINE|Alu 42162 NM_001363974 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 114.5-9 chr16 63308913 63309082 + 1 NA Intergenic Intergenic -1272559 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 167.5-16 chr3 138963662 138963883 + 1 NA Intergenic Intergenic 16555 NM_001040061 401089 Hs.591303 NM_001040061 ENSG00000206262 FOXL2NB C3orf72 FOXL2 neighbor protein-coding 133.5 chr1 32212144 32212304 + 1 NA intron (NM_001099434, intron 4 of 8) intron (NM_001099434, intron 4 of 8) 3130 NM_001099434 149069 Hs.424588 NM_001099434 ENSG00000222046 DCDC2B - doublecortin domain containing 2B protein-coding 156.5-4 chr11 61448166 61448340 + 1 NA Intergenic Intergenic 18128 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 136.5-17 chr6 97499799 97500047 + 1 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 194337 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 333.5-11 chr20 2789233 2789828 + 1 NA Intergenic Intergenic 11097 NM_001184699 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 115.5-6 chr15 59716917 59717079 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -27678 NM_001368061 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 322.5-23 chr4 174633664 174634192 + 1 NA Intergenic Intergenic -111030 NM_001256306 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 146.5-12 chr16 62204997 62205228 + 1 NA Intergenic Intergenic -168674 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 329.5-2 chr1 88146415 88146902 + 1 NA Intergenic MIR|SINE|MIR -537486 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 174.5-31 chr5 110478272 110478512 + 1 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 35523 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 217.5-2 chr1 201952883 201953229 + 1 NA Intergenic AluSx4|SINE|Alu -2447 NM_006335 10440 Hs.20716 NM_006335 ENSG00000134375 TIMM17A TIM17|TIM17A translocase of inner mitochondrial membrane 17A protein-coding 182.5-27 chr5 122224142 122224354 + 1 NA Intergenic L1MA9|LINE|L1 64072 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 198.5-10 chr18 39645799 39646114 + 1 NA intron (NR_024391, intron 2 of 3) L1ME1|LINE|L1 -23781 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 170.5-2 chr1 164705415 164705656 + 1 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 69106 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 356.5-10 chr11 102118496 102119003 + 1 NA intron (NM_001130145, intron 2 of 8) AluSx|SINE|Alu 6301 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 265.5 chr1 67187051 67187471 + 1 NA intron (NM_144701, intron 4 of 10) L1MB8|LINE|L1 20807 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 140.5-11 chr16 3281371 3281583 + 1 NA Intergenic MIR|SINE|MIR -2014 NM_005741 10127 Hs.611475 NM_005741 ENSG00000006194 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 166.5-7 chr18 6968891 6969089 + 1 NA intron (NM_005559, intron 48 of 62) intron (NM_005559, intron 48 of 62) 14313 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 269.5-18 chr17 50022230 50022703 + 1 NA Intergenic Intergenic -27242 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 117.5-8 chr15 68206473 68206666 + 1 NA promoter-TSS (NM_033429) promoter-TSS (NM_033429) -459 NR_104583 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 260.5-18 chr19 50053256 50053725 + 1 NA intron (NR_138096, intron 1 of 4) AluY|SINE|Alu 2901 NR_138096 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 160.5 chr1 28767677 28767950 + 1 NA intron (NM_001173128, intron 5 of 5) AluSc|SINE|Alu 30873 NM_001172828 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 214.5-7 chr15 67183521 67183753 + 1 NA intron (NM_001145103, intron 6 of 8) intron (NM_001145103, intron 6 of 8) 17482 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 262.5-12 chr2 151058911 151059422 + 1 NA Intergenic AluJb|SINE|Alu 202697 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 340.5-20 chr3 63366261 63366805 + 1 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -76779 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 201.5-16 chr19 43846229 43846434 + 1 NA intron (NM_181845, intron 6 of 6) intron (NM_181845, intron 6 of 6) 19010 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 146.5-28 chr4 53459893 53460063 + 1 NA TTS (NM_032622) TTS (NM_032622) -40099 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 314.5-34 chr7 81760648 81761205 + 1 NA intron (NM_001010933, intron 2 of 7) intron (NM_001010933, intron 2 of 7) 9121 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 273.5-33 chr8 101817091 101817462 + 1 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -26307 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 183.5-33 chr9 69566954 69567280 + 1 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 105254 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 152.5-21 chr2 171455511 171455805 + 1 NA intron (NM_001164821, intron 6 of 11) L1PA12|LINE|L1 -20855 NM_024770 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 254.5-25 chr19 28927358 28927804 + 1 NA Intergenic Intergenic -37550 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 247.5-3 chr1 153601674 153601922 + 1 NA Intergenic AluY|SINE|Alu 7557 NM_001317007 140576 Hs.515714 NM_080388 ENSG00000188643 S100A16 AAG13|DT1P1A7|S100F S100 calcium binding protein A16 protein-coding 166.5-6 chr18 6478436 6478634 + 1 NA Intergenic Intergenic -32881 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 211.5-25 chr3 61436233 61436589 + 1 NA Intergenic Intergenic -125160 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 213.5-29 chr5 117876838 117877217 + 1 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 146666 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 244.5-45 chr9 27306332 27306800 + 1 NA Intergenic Intergenic -9416 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 245.5-24 chr4 188103370 188103759 + 1 NA intron (NM_173553, intron 3 of 7) L2a|LINE|L2 2023 NM_001303419 205860 Hs.276429 NM_173553 ENSG00000179046 TRIML2 SPRYD6 tripartite motif family like 2 protein-coding 134.5-9 chr2 68104941 68105176 + 1 NA Intergenic L1ME3F|LINE|L1 -42054 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 145.5-3 chr1 79245565 79245852 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR -238978 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 360.5-2 chr10 81407537 81408082 + 1 NA Intergenic AluY|SINE|Alu -467385 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 282.5-30 chr8 108922677 108922959 + 1 NA Intergenic L2c|LINE|L2 -135224 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 157.5-14 chr2 234129132 234129330 + 1 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 78529 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 148.5-8 chr12 123559125 123559360 + 1 NA Intergenic Intergenic 22833 NR_037470 100500909 NR_037470 ENSG00000266655 MIR3908 - microRNA 3908 ncRNA 157.5-8 chr2 67685410 67685576 + 1 NA Intergenic MER20|DNA|hAT-Charlie 140069 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 150.5-22 chr8 65956901 65957096 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -57980 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 280.5-5 chr10 114466804 114467173 + 1 NA intron (NM_001352440, intron 11 of 20) AluSx|SINE|Alu 59925 NM_001322897 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 196.5-32 chr6 120011566 120011813 + 1 NA Intergenic L1ME2z|LINE|L1 -3490 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 256.5-11 chr16 4023602 4023994 + 1 NA intron (NM_001116, intron 2 of 10) AluSz|SINE|Alu -73354 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 222.5-33 chr8 134304858 134305171 + 1 NA Intergenic Intergenic -293057 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 162.5-16 chr4 121881034 121881267 + 1 NA intron (NM_001130698, intron 11 of 11) intron (NM_001130698, intron 11 of 11) -10653 NM_018190 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 262.5-14 chr21 23633636 23634039 + 1 NA Intergenic Intergenic -249002 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 146.5-27 chr4 26678742 26678981 + 1 NA intron (NM_001292054, intron 8 of 17) PRIMA4_LTR|LTR|ERV1 94777 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 230.5-7 chr10 63745566 63745859 + 1 NA Intergenic L1PA16|LINE|L1 -223822 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 130.5-14 chr2 96353002 96353188 + 1 NA intron (NM_001281712, intron 6 of 16) intron (NM_001281712, intron 6 of 16) 17329 NM_015341 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 280.5-21 chr3 143037846 143038312 + 1 NA intron (NM_001080415, intron 21 of 27) intron (NM_001080415, intron 21 of 27) 36509 NM_001080415 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 194.5-8 chr12 89114142 89114497 + 1 NA Intergenic L1ME3G|LINE|L1 -94627 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 151.5-15 chr3 100437702 100437888 + 1 NA intron (NM_001085451, intron 2 of 3) intron (NM_001085451, intron 2 of 3) 36256 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 205.5 chr1 112500426 112500631 + 1 NA intron (NM_004185, intron 2 of 5) AluJr|SINE|Alu -8437 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 177.5-28 chr8 65955953 65956210 + 1 NA Intergenic Intergenic -58897 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 390.5-33 chr9 76749595 76750348 + 1 NA intron (NM_001308048, intron 6 of 17) MER21C|LTR|ERVL -14465 NR_015342 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 252.5-27 chr8 50754413 50754686 + 1 NA intron (NR_135797, intron 20 of 20) L1MDa|LINE|L1 590418 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 290.5-14 chr18 68876774 68877296 + 1 NA intron (NM_001093729, intron 7 of 9) intron (NM_001093729, intron 7 of 9) 78955 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 112.5-4 chr10 62052715 62052830 + 1 NA intron (NM_001244638, intron 2 of 6) intron (NM_001244638, intron 2 of 6) 3415 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 191.5-25 chr9 27407067 27407316 + 1 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -110041 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 368.5-16 chr16 22704354 22704733 + 1 NA Intergenic L2b|LINE|L2 -109619 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 148.5-2 chr1 156252953 156253158 + 1 NA exon (NM_001323614, exon 17 of 21) exon (NM_001323614, exon 17 of 21) -4938 NM_024897 79957 Hs.235873 NM_024897 ENSG00000160781 PAQR6 PRdelta progestin and adipoQ receptor family member 6 protein-coding 181.5-16 chr16 69542472 69542654 + 1 NA Intergenic AluSx1|SINE|Alu 23305 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 214.5-20 chr3 119425978 119426227 + 1 NA Intergenic L1MA7|LINE|L1 37513 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 280.5-9 chr14 68568015 68568530 + 1 NA intron (NM_001321818, intron 10 of 10) L2c|LINE|L2 60515 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 137.5-19 chr3 122251004 122251261 + 1 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 66805 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 121.5 chr1 109623051 109623214 + 1 NA promoter-TSS (NM_001257361) promoter-TSS (NM_001257361) -856 NM_001257361 271 Hs.82927 NM_004037 ENSG00000116337 AMPD2 PCH9|SPG63 adenosine monophosphate deaminase 2 protein-coding 230.5-22 chr14 70837717 70838001 + 1 NA Intergenic L1ME1|LINE|L1 -28346 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 140.5-13 chr16 77233741 77233905 + 1 NA Intergenic Intergenic 34415 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 192.5-30 chr8 82576474 82576742 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -335496 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 297.5-10 chr14 44518967 44519470 + 1 NA intron (NR_135257, intron 2 of 2) L1M1|LINE|L1 11809 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 337.5-27 chr6 131881654 131882087 + 1 NA intron (NM_006208, intron 20 of 24) AluSx1|SINE|Alu 69502 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 212.5-24 chr5 96337755 96338134 + 1 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 94215 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 184.5-4 chr11 81653529 81653890 + 1 NA Intergenic L1PA17|LINE|L1 237127 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 256.5-34 chr9 38136355 38136789 + 1 NA Intergenic MIR3|SINE|MIR -67345 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 115.5-16 chr4 32541115 32541274 + 1 NA Intergenic Intergenic 190156 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 187.5-34 chr9 25133823 25134059 + 1 NA Intergenic Intergenic 544917 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 164.5-17 chr2 161057363 161057550 + 1 NA Intergenic Intergenic -79499 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 120.5-13 chr3 111261532 111261767 + 1 NA Intergenic L1MB2|LINE|L1 189833 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 298.5-26 chr8 137658981 137659279 + 1 NA Intergenic L2b|LINE|L2 -245542 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 258.5-28 chr7 42135390 42135745 + 1 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 101642 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 195.5-11 chr14 47525506 47525790 + 1 NA intron (NM_001113498, intron 1 of 16) AluSx|SINE|Alu 149306 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 150.5-10 chr2 69752721 69752979 + 1 NA intron (NM_001320700, intron 1 of 12) intron (NM_001320700, intron 1 of 12) 10716 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 260.5-17 chr19 36848149 36848643 + 1 NA intron (NM_001242800, intron 1 of 4) MER21C|LTR|ERVL 1871 NM_001242801 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 215.5-26 chr20 12416291 12416572 + 1 NA Intergenic MLT1E1|LTR|ERVL-MaLR 498538 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 392.5-27 chr8 144233909 144234637 + 1 NA intron (NM_001288814, intron 13 of 41) AluY|SINE|Alu 28464 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 124.5-11 chr5 36100104 36100292 + 1 NA 3' UTR (NM_001007527, exon 18 of 18) 3' UTR (NM_001007527, exon 18 of 18) -33316 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 159.5-2 chr1 226363622 226363781 + 1 NA intron (NM_001618, intron 20 of 22) intron (NM_001618, intron 20 of 22) 44392 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 310.5-13 chr14 43542971 43543510 + 1 NA Intergenic Intergenic 964043 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 157.5-23 chr5 150071991 150072243 + 1 NA intron (NM_001288705, intron 6 of 20) intron (NM_001288705, intron 6 of 20) 14523 NR_109969 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 196.5-29 chr5 41445281 41445622 + 1 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 65150 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 215.5-42 chr8 28825295 28825617 + 1 NA intron (NR_026826, intron 4 of 14) intron (NR_026826, intron 4 of 14) 64459 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 151.5-20 chr5 54332453 54332629 + 1 NA intron (NR_126379, intron 1 of 4) intron (NR_126379, intron 1 of 4) 11597 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 180.5-15 chr4 10750405 10750703 + 1 NA Intergenic Intergenic -65786 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 137.5-21 chr5 129156155 129156341 + 1 NA Intergenic MER50B|LTR|ERV1 58560 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 152.5-6 chr10 57151742 57152005 + 1 NA Intergenic L1MA3|LINE|L1 152686 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 257.5-7 chr10 28535507 28535832 + 1 NA exon (NM_016628, exon 3 of 14) exon (NM_016628, exon 3 of 14) 2551 NM_016628 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 135.5-5 chr17 66766324 66766477 + 1 NA intron (NM_002737, intron 13 of 16) intron (NM_002737, intron 13 of 16) -20672 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 183.5-21 chr3 58640726 58640952 + 1 NA intron (NM_138805, intron 6 of 9) intron (NM_138805, intron 6 of 9) -13229 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 154.5-9 chr14 71436160 71436459 + 1 NA intron (NM_015556, intron 4 of 26) L1M5|LINE|L1 -2630 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 239.5-8 chr16 25150604 25150977 + 1 NA intron (NM_001032391, intron 4 of 8) intron (NM_001032391, intron 4 of 8) -1758 NR_039998 100506655 Hs.657576 NR_039998 ENSG00000260034 LCMT1-AS2 - LCMT1 antisense RNA 2 ncRNA 398.5-2 chr1 111731484 111732112 + 1 NA intron (NM_198926, intron 1 of 1) intron (NM_198926, intron 1 of 1) 7597 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 366.5-2 chr1 183364949 183365580 + 1 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) 53116 NM_015039 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 179.5-16 chr6 39321900 39322080 + 1 NA intron (NM_001135105, intron 1 of 4) intron (NM_001135105, intron 1 of 4) 712 NM_032115 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 121.5-3 chr14 74571810 74572042 + 1 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 40311 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 187.5-18 chr3 17080686 17080962 + 1 NA intron (NM_015184, intron 5 of 5) intron (NM_015184, intron 5 of 5) 147628 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 209.5-13 chr14 55031810 55032127 + 1 NA 5' UTR (NM_199421, exon 2 of 3) 5' UTR (NM_199421, exon 2 of 3) 4732 NM_199421 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 250.5-3 chr10 67729456 67729805 + 1 NA Intergenic Intergenic -33435 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 119.5-17 chr8 101251456 101251690 + 1 NA Intergenic AluSz|SINE|Alu -45509 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 308.5-27 chr5 113537584 113537902 + 1 NA intron (NM_001345975, intron 6 of 28) L2|LINE|L2 24049 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 244.5-40 chr7 46478326 46478795 + 1 NA Intergenic Intergenic 218562 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 120.5-5 chr14 52464920 52465040 + 1 NA intron (NM_001160047, intron 16 of 20) intron (NM_001160047, intron 16 of 20) 87525 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 278.5-19 chr4 112254933 112255342 + 1 NA intron (NM_018569, intron 3 of 9) AluYa5|SINE|Alu 23350 NM_018569 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 253.5 chr1 45818767 45819117 + 1 NA intron (NM_001324320, intron 1 of 29) HSMAR1|DNA|TcMar-Mariner 15329 NM_001319245 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 174.5-20 chr22 26672198 26672420 + 1 NA promoter-TSS (NR_110543) promoter-TSS (NR_110543) -534 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 305.5-44 chr9 115510980 115511535 + 1 NA Intergenic L1ME3D|LINE|L1 232982 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 166.5-15 chr4 36405256 36405573 + 1 NA Intergenic LTR82B|LTR|ERVL 21014 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 245.5-33 chr6 151106079 151106567 + 1 NA Intergenic Intergenic 3648 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 208.5-32 chr8 125813635 125813970 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR 137395 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 309.5-5 chr11 30318551 30319139 + 1 NA Intergenic L1MEc|LINE|L1 -4259 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 256.5-6 chr13 20056696 20056987 + 1 NA intron (NM_197968, intron 14 of 24) Tigger17|DNA|TcMar-Tigger -45860 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 201.5-27 chr7 6444964 6445357 + 1 NA intron (NM_001142936, intron 2 of 12) L1MB8|LINE|L1 2794 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 219.5-24 chr3 63348035 63348364 + 1 NA intron (NM_001130003, intron 2 of 5) L1PB4|LINE|L1 69891 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 262.5-6 chr14 76678810 76679135 + 1 NA Intergenic Intergenic -82496 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 346.5-25 chr5 29816310 29816839 + 1 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? -63986 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 197.5-25 chr22 50449931 50450211 + 1 NA intron (NM_001365819, intron 35 of 39) L1MEf|LINE|L1 24964 NM_001365819 6305 Hs.589924 NM_002972 ENSG00000100241 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 297.5-23 chr22 26973732 26974063 + 1 NA Intergenic L1ME3A|LINE|L1 70605 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 168.5-9 chr11 114251438 114251647 + 1 NA 3' UTR (NM_001354752, exon 5 of 5) 3' UTR (NM_001354752, exon 5 of 5) -44271 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 116.5-9 chr21 31303488 31303604 + 1 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 40808 NM_001353686 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 259.5-37 chr5 168089537 168089935 + 1 NA intron (NM_001368145, intron 6 of 26) MIRb|SINE|MIR -76109 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 141.5-2 chr1 118167951 118168126 + 1 NA intron (NM_206996, intron 1 of 48) MSTA|LTR|ERVL-MaLR 17190 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 197.5-11 chr14 24236059 24236439 + 1 NA intron (NM_001351024, intron 6 of 10).2 intron (NM_001351024, intron 6 of 10).2 3320 NM_001283023 51292 Hs.368855 NM_016576 ENSG00000100938 GMPR2 GMPR 2 guanosine monophosphate reductase 2 protein-coding 142.5-20 chr8 113724226 113724413 + 1 NA Intergenic L1M5|LINE|L1 -287380 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 317.5-34 chr7 38882275 38882739 + 1 NA intron (NM_014396, intron 2 of 28) L2a|LINE|L2 26684 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 136.5-10 chr16 12692955 12693132 + 1 NA intron (NM_001099455, intron 2 of 2) intron (NM_001099455, intron 2 of 2) -27278 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 172.5-9 chr19 31413193 31413417 + 1 NA Intergenic Intergenic -63869 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 312.5-8 chr12 126743915 126744504 + 1 NA intron (NR_038256, intron 2 of 3) MIR|SINE|MIR 7202 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 112.5-7 chr2 22390218 22390390 + 1 NA Intergenic Intergenic -146175 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 354.5-8 chr14 55891038 55891472 + 1 NA Intergenic L1ME4b|LINE|L1 -94581 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 211.5-10 chr14 65661592 65661920 + 1 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 190654 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 154.5-17 chr3 49037609 49037781 + 1 NA intron (NM_017730, intron 7 of 10) AluSx1|SINE|Alu -8297 NM_000884 3615 Hs.654400 NM_000884 ENSG00000178035 IMPDH2 IMPD2|IMPDH-II inosine monophosphate dehydrogenase 2 protein-coding 164.5-4 chr10 66355621 66355872 + 1 NA intron (NM_001127384, intron 12 of 17) L1MD|LINE|L1 -570290 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 238.5-27 chr4 45437274 45437658 + 1 NA Intergenic L1PA16|LINE|L1 686588 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 223.5-13 chr15 23636524 23636924 + 1 NA Intergenic L1MD2|LINE|L1 11143 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 358.5-8 chr17 7202674 7203257 + 1 NA exon (NM_001321075, exon 8 of 20) exon (NM_001321075, exon 8 of 20) 2222 NM_001321077 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 138.5-18 chr8 121273590 121273798 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -365652 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 290.5-18 chr21 20373625 20374081 + 1 NA Intergenic Intergenic -115168 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 112.5-3 chr1 119459208 119459379 + 1 NA Intergenic Intergenic 44143 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 375.5-4 chr11 114779048 114779607 + 1 NA Intergenic Intergenic 100800 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 210.5-20 chr5 17190635 17190927 + 1 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -26042 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 432.5-18 chr6 122858040 122858670 + 1 NA Intergenic Intergenic 69097 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 136.5-5 chr11 78507076 78507212 + 1 NA intron (NM_024678, intron 6 of 13) L1M4c|LINE|L1 -26032 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 150.5-13 chr22 22887929 22888166 + 1 NA 5' UTR (NM_001178126, exon 1 of 3) 5' UTR (NM_001178126, exon 1 of 3) 231 NM_001256296 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 219.5-18 chr20 13201163 13201509 + 1 NA Intergenic L2|LINE|L2 -19938 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 141.5-11 chr16 26643535 26643712 + 1 NA Intergenic LTR16C|LTR|ERVL -423304 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 149.5-6 chr18 3634570 3634852 + 1 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 30974 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 194.5-29 chr6 17304690 17304956 + 1 NA Intergenic AluSc|SINE|Alu 22122 NM_153020 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 202.5-8 chr10 69934748 69935069 + 1 NA intron (NM_080801, intron 29 of 38) MER102c|DNA|hAT-Charlie -117938 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 224.5 chr1 45336700 45336961 + 1 NA intron (NM_012222, intron 1 of 15) LTR29|LTR|ERV1 3127 NM_001048174 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 300.5-12 chr12 105641305 105641851 + 1 NA Intergenic Intergenic -62625 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 237.5-11 chr2 82091901 82092331 + 1 NA Intergenic Intergenic -625170 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 207.5-30 chr5 38767157 38767462 + 1 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -47036 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 299.5-6 chr12 6225023 6225322 + 1 NA intron (NM_001769, intron 1 of 7) L1ME3B|LINE|L1 24772 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 266.5-6 chr12 129490039 129490483 + 1 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 281660 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 181.5-31 chr7 47310094 47310403 + 1 NA intron (NM_022748, intron 20 of 30) intron (NM_022748, intron 20 of 30) 154555 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 135.5-14 chr8 10567431 10567685 + 1 NA Intergenic Intergenic 42026 NM_198464 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 118.5-7 chr2 219491151 219491358 + 1 NA intron (NM_005876, intron 38 of 40) intron (NM_005876, intron 38 of 40) -5101 NM_001286811 100996693 Hs.21639 NM_001286811 ENSG00000286095 SPEGNB - SPEG neighbor protein-coding 186.5-14 chr2 73658925 73659229 + 1 NA intron (NR_003683, intron 1 of 6) L1MB7|LINE|L1 14158 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 144.5-6 chr14 91937337 91937513 + 1 NA intron (NM_006329, intron 3 of 10) MER113|DNA|hAT-Charlie 10277 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 115.5-17 chr4 69738272 69738479 + 1 NA intron (NM_014465, intron 4 of 7) THE1D|LTR|ERVL-MaLR 22245 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 261.5-31 chr7 88091116 88091474 + 1 NA intron (NM_001324421, intron 4 of 28) intron (NM_001324421, intron 4 of 28) -125365 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 191.5-9 chr16 58427425 58427780 + 1 NA Intergenic Intergenic 35131 NM_001126130 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 211.5-17 chr2 51723322 51723610 + 1 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -647182 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 265.5-15 chr17 60368592 60368857 + 1 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 23409 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 254.5-6 chr11 24368678 24369104 + 1 NA Intergenic MIR|SINE|MIR -128162 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 191.5-6 chr15 71134027 71134218 + 1 NA Intergenic Intergenic -7327 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 182.5-11 chr2 63969403 63969599 + 1 NA intron (NM_001005739, intron 4 of 22) MER1A|DNA|hAT-Charlie 49927 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 292.5-18 chr21 30730601 30731183 + 1 NA Intergenic Intergenic -12115 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 123.5-16 chr8 42134979 42135206 + 1 NA Intergenic (TTTTC)n|Simple_repeat|Simple_repeat -17854 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 172.5-16 chr6 51288949 51289185 + 1 NA Intergenic AluSc8|SINE|Alu -332803 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 244.5-35 chr5 142473670 142474144 + 1 NA Intergenic AluY|SINE|Alu 147427 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 289.5-7 chr1 168852693 168853082 + 1 NA Intergenic L1MEg|LINE|L1 65946 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 196.5-17 chr2 42746614 42746879 + 1 NA intron (NM_001330443, intron 16 of 16) MER21B|LTR|ERVL 17515 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 246.5-13 chr16 5903492 5903914 + 1 NA Intergenic Intergenic -115321 NM_001142333 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 161.5 chr1 225412658 225412819 + 1 NA intron (NM_194442, intron 7 of 13) intron (NM_194442, intron 7 of 13) 15300 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 178.5-14 chr3 158831843 158832090 + 1 NA Intergenic Intergenic 29912 NM_001289407 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 377.5-14 chr3 96635964 96636538 + 1 NA Intergenic Intergenic -178343 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 293.5-24 chr3 84872214 84872739 + 1 NA Intergenic L1ME4a|LINE|L1 -2901 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 144.5-16 chr4 108860717 108860891 + 1 NA intron (NM_198721, intron 22 of 36) intron (NM_198721, intron 22 of 36) -97751 NM_001146627 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 231.5-27 chr5 154586794 154587251 + 1 NA Intergenic Intergenic 9050 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 214.5-14 chr2 99448674 99448936 + 1 NA intron (NR_135652, intron 4 of 21) intron (NR_135652, intron 4 of 21) 41212 NR_135652 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 337.5-15 chr2 53335723 53336342 + 1 NA Intergenic L1ME2z|LINE|L1 -431751 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 230.5-19 chr14 26609706 26610126 + 1 NA intron (NR_147061, intron 1 of 6) intron (NR_147061, intron 1 of 6) 11269 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 223.5-4 chr10 33164945 33165332 + 1 NA Intergenic Intergenic -48331 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 270.5-3 chr1 242456355 242456681 + 1 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -7036 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 131.5-24 chr5 100773711 100773842 + 1 NA Intergenic AluY|SINE|Alu 42789 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 134.5-17 chr4 115461061 115461250 + 1 NA Intergenic L1ME3E|LINE|L1 -347535 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 342.5-25 chr3 130271478 130271996 + 1 NA non-coding (NR_027898, exon 23 of 23) non-coding (NR_027898, exon 23 of 23) 58917 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 295.5-22 chr5 45137280 45137827 + 1 NA Intergenic Intergenic 328606 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 214.5-19 chr3 116488807 116489123 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -43478 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 405.5-20 chr6 40460009 40460660 + 1 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 81997 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 153.5-13 chr8 91427041 91427338 + 1 NA Intergenic Intergenic 177870 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 290.5-10 chr14 28706043 28706462 + 1 NA Intergenic AluJr|SINE|Alu 59067 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 121.5-18 chr5 64703155 64703314 + 1 NA intron (NM_001164442, intron 2 of 2) intron (NM_001164442, intron 2 of 2) 12731 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 346.5-14 chr2 62995391 62996054 + 1 NA intron (NM_001142615, intron 18 of 22) intron (NM_001142615, intron 18 of 22) 51989 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 231.5-20 chr3 74406104 74406450 + 1 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 114863 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 133.5-22 chr8 80110472 80110605 + 1 NA intron (NM_001025253, intron 1 of 7) L1PA3|LINE|L1 -29707 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 267.5-20 chr4 118258915 118259316 + 1 NA TTS (NR_146513) TTS (NR_146513) -19647 NR_003584 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 265.5-7 chr10 98207431 98207900 + 1 NA intron (NM_001256620, intron 3 of 8) intron (NM_001256620, intron 3 of 8) 60529 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 244.5 chr1 7292054 7292449 + 1 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 97503 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 186.5-4 chr10 11234904 11235118 + 1 NA intron (NM_001025076, intron 3 of 13) MIRc|SINE|MIR 69981 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 145.5-22 chr4 67416186 67416449 + 1 NA TTS (NR_110747) TTS (NR_110747) 5683 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 251.5-19 chr20 57589868 57590119 + 1 NA Intergenic Intergenic 28883 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 117.5-3 chr10 49552183 49552397 + 1 NA Intergenic LTR23|LTR|ERV1 -12752 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 367.5-8 chr12 4566361 4566980 + 1 NA intron (NM_001371301, intron 1 of 14) L2c|LINE|L2 4462 NM_001371301 186.5-5 chr10 48276066 48276411 + 1 NA Intergenic Intergenic -1542 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 164.5-7 chr12 41442549 41442760 + 1 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 4915 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 256.5-32 chr8 67154774 67155147 + 1 NA intron (NM_001363133, intron 16 of 27) intron (NM_001363133, intron 16 of 27) 71112 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 239.5-31 chrX 130922405 130922796 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -19283 NM_001281736 10495 Hs.171458 NM_006375 ENSG00000165675 ENOX2 APK1|COVA1|tNOX ecto-NOX disulfide-thiol exchanger 2 protein-coding 258.5 chr1 22564374 22564740 + 1 NA intron (NM_020526, intron 1 of 16) intron (NM_020526, intron 1 of 16) 1068 NM_020526 2046 Hs.283613 NM_020526 ENSG00000070886 EPHA8 EEK|EK3|HEK3 EPH receptor A8 protein-coding 166.5-20 chr7 53740514 53740742 + 1 NA intron (NR_038371, intron 4 of 5) L1M3|LINE|L1 71303 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 120.5-15 chr3 162064498 162064687 + 1 NA Intergenic Intergenic 567784 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 265.5-18 chr2 128353060 128353589 + 1 NA Intergenic AluSx1|SINE|Alu -34456 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 123.5-12 chr5 17378959 17379197 + 1 NA non-coding (NR_033975, exon 3 of 3) non-coding (NR_033975, exon 3 of 3) 8232 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 174.5-9 chr13 22096943 22097275 + 1 NA Intergenic Intergenic -113176 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 233.5-23 chr4 112639388 112639666 + 1 NA intron (NM_001370978, intron 2 of 13) AluY|SINE|Alu 2025 NM_001370981 193.5-11 chr14 60807256 60807608 + 1 NA intron (NM_001177963, intron 3 of 6) intron (NM_001177963, intron 3 of 6) 72671 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 181.5-25 chr5 10043274 10043535 + 1 NA Intergenic LTR18B|LTR|ERVL -139580 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 136.5-20 chr8 119003748 119003964 + 1 NA intron (NM_001324095, intron 1 of 7) Charlie17a|DNA|hAT-Charlie 51593 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 278.5-2 chr1 204891305 204891726 + 1 NA intron (NM_001160332, intron 1 of 27) LTR16E2|LTR|ERVL -52711 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 205.5-22 chr5 115262952 115263247 + 1 NA promoter-TSS (NM_005023) promoter-TSS (NM_005023) -222 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 147.5-13 chr4 27423567 27423714 + 1 NA Intergenic Intergenic 206161 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 161.5-23 chr8 121783861 121784084 + 1 NA Intergenic Intergenic -142532 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 162.5-23 chr8 113951808 113952066 + 1 NA Intergenic L1MD1|LINE|L1 -514998 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 176.5-10 chr2 114511899 114512221 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 50483 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 115.5-5 chr11 85317403 85317550 + 1 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 309794 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 326.5-23 chr3 85856489 85857002 + 1 NA intron (NM_001256502, intron 3 of 10) intron (NM_001256502, intron 3 of 10) -28695 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 185.5-21 chr21 45741692 45741993 + 1 NA intron (NM_001348241, intron 2 of 16) intron (NM_001348241, intron 2 of 16) -6172 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 153.5-9 chr4 72676003 72676308 + 1 NA Intergenic L1PB3|LINE|L1 -106934 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 219.5-20 chr22 25638429 25638862 + 1 NA intron (NM_001362778, intron 2 of 19) ERVL-int|LTR|ERVL 73970 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 359.5-14 chr14 61792377 61792960 + 1 NA intron (NM_003082, intron 8 of 9) intron (NM_003082, intron 8 of 9) -19494 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 143.5-23 chr6 38610016 38610238 + 1 NA intron (NM_001099272, intron 1 of 10) intron (NM_001099272, intron 1 of 10) -14060 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 484.5-15 chr20 40200749 40201617 + 1 NA Intergenic L1ME3C|LINE|L1 196722 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 192.5-23 chr3 10842309 10842658 + 1 NA intron (NM_014229, intron 4 of 13) intron (NM_014229, intron 4 of 13) 26255 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 296.5-4 chr1 229437619 229437915 + 1 NA Intergenic MIR|SINE|MIR -3671 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 169.5 chr1 38706795 38707086 + 1 NA Intergenic L1MEc|LINE|L1 152832 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 233.5-33 chr7 146552243 146552674 + 1 NA Intergenic L2a|LINE|L2 -221813 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 396.5-22 chr22 35368359 35368973 + 1 NA Intergenic Intergenic -12430 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 218.5-5 chr11 67018047 67018417 + 1 NA Intergenic AluSq2|SINE|Alu -4561 NM_001177880 91683 Hs.287636 NM_177963 ENSG00000173227 SYT12 SYT11|sytXII synaptotagmin 12 protein-coding 205.5-11 chr2 109632869 109633218 + 1 NA Intergenic Intergenic 18679 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 152.5-15 chr16 51817813 51818030 + 1 NA Intergenic Intergenic 55402 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 128.5-29 chr8 120440575 120440767 + 1 NA intron (NM_014078, intron 2 of 6) L2a|LINE|L2 4479 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 170.5 chr1 91083205 91083537 + 1 NA Intergenic Intergenic -61116 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 423.5-6 chr12 4823659 4824219 + 1 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 14763 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 313.5-21 chr2 161317000 161317355 + 1 NA intron (NM_005805, intron 2 of 11) intron (NM_005805, intron 2 of 11) 8752 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 345.5-12 chr15 40164427 40164813 + 1 NA intron (NM_001211, intron 1 of 22) intron (NM_001211, intron 1 of 22) 3611 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 219.5-41 chr8 104616815 104617098 + 1 NA Intergenic MIRb|SINE|MIR -27932 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 223.5-37 chr7 48214793 48215148 + 1 NA intron (NM_152701, intron 3 of 61) Tigger1|DNA|TcMar-Tigger 43512 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 136.5 chr1 88392425 88392618 + 1 NA Intergenic Intergenic -291623 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 174.5-11 chr15 27458625 27458900 + 1 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -297443 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 317.5-38 chr8 125315552 125316180 + 1 NA intron (NM_001349486, intron 5 of 7) AluJb|SINE|Alu -114492 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 169.5-8 chr17 81944590 81944875 + 1 NA intron (NM_001145113, intron 1 of 2) MER21C|LTR|ERVL 2501 NM_001145113 255275 Hs.729645 NM_001145113 ENSG00000185105 MYADML2 - myeloid associated differentiation marker like 2 protein-coding 164.5-14 chr2 30154220 30154528 + 1 NA intron (NM_001127400, intron 2 of 3) MER102a|DNA|hAT-Charlie 7367 NM_001127400 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 112.5-5 chr14 59504179 59504338 + 1 NA TTS (NM_001164399) TTS (NM_001164399) 19741 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 246.5-8 chr12 27784412 27784797 + 1 NA intron (NM_020782, intron 1 of 2) FAM|SINE|Alu 4371 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 207.5-9 chr11 81311449 81311806 + 1 NA Intergenic Intergenic -548824 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 245.5-20 chr2 106874500 106874955 + 1 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 11301 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 126.5-16 chr9 78322867 78323078 + 1 NA intron (NM_021154, intron 7 of 7) L1ME3G|LINE|L1 25847 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 250.5-5 chr11 21057876 21058233 + 1 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 388468 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 188.5 chr1 41774919 41775111 + 1 NA intron (NM_024503, intron 1 of 8) AluJb|SINE|Alu 143907 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 365.5-8 chr19 36641813 36642303 + 1 NA intron (NM_001297623, intron 4 of 4) AluJb|SINE|Alu 24779 NM_001322828 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 183.5-8 chr12 21687342 21687705 + 1 NA Intergenic L1PA15|LINE|L1 -29668 NM_001315537 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 185.5-24 chr3 184553589 184553881 + 1 NA intron (NR_046593, intron 1 of 1) intron (NR_046593, intron 1 of 1) 3183 NR_046593 100874079 Hs.574899 NR_046593 ENSG00000230215 LINC01840 EIF2B5-AS1 long intergenic non-protein coding RNA 1840 ncRNA 202.5-6 chr1 239682050 239682333 + 1 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 36928 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 175.5-7 chr15 27716783 27717073 + 1 NA Intergenic L1MD|LINE|L1 382387 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 139.5-9 chr19 51965548 51965722 + 1 NA exon (NM_021632, exon 5 of 5) exon (NM_021632, exon 5 of 5) 16501 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 192.5-22 chr3 897782 898085 + 1 NA Intergenic L1MEg|LINE|L1 -195091 NM_001349354 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 140.5-14 chr2 50496014 50496204 + 1 NA intron (NM_001330093, intron 14 of 22) intron (NM_001330093, intron 14 of 22) -148353 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 137.5-18 chr2 219119921 219120158 + 1 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 40826 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 171.5-31 chr9 16024765 16025039 + 1 NA Intergenic MER81|DNA|hAT-Blackjack 228205 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 181.5-29 chr5 164998045 164998363 + 1 NA Intergenic Intergenic 527925 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 224.5-9 chr14 27956370 27956623 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -283275 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 216.5-35 chr7 18402595 18402976 + 1 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -92925 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 185.5-16 chr2 60031132 60031442 + 1 NA Intergenic L1MEc|LINE|L1 351749 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 149.5-17 chr7 23379417 23379654 + 1 NA intron (NM_006547, intron 3 of 14) intron (NM_006547, intron 3 of 14) -16911 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 115.5-8 chr18 61662800 61662989 + 1 NA Intergenic MIRc|SINE|MIR -85282 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 292.5-11 chr15 68381773 68382158 + 1 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 50198 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 235.5-26 chr8 88540858 88541237 + 1 NA Intergenic Intergenic -213564 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 210.5-12 chr2 123816729 123817066 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 208277 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 262.5-19 chr5 38427745 38428139 + 1 NA intron (NM_182798, intron 9 of 16) MamRep434|DNA|TcMar-Tigger -17604 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 209.5-24 chr3 26440968 26441247 + 1 NA Intergenic Intergenic -181699 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 359.5-30 chr5 66357142 66357811 + 1 NA Intergenic L2|LINE|L2 -148030 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 175.5-19 chr3 23994461 23994710 + 1 NA Intergenic Intergenic 48464 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 133.5-11 chr16 27221281 27221414 + 1 NA 3' UTR (NM_001145348, exon 8 of 8) 3' UTR (NM_001145348, exon 8 of 8) 17372 NM_001145348 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 308.5-9 chr14 25515685 25516204 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR -465647 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 125.5-10 chr6 168397383 168397593 + 1 NA Intergenic MamSINE1|SINE|tRNA-RTE -43696 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 153.5-7 chr2 161511157 161511397 + 1 NA Intergenic L1M4|LINE|L1 -3375 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 189.5-27 chr8 102158193 102158569 + 1 NA Intergenic Intergenic 32949 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 194.5-15 chr2 216873371 216873744 + 1 NA Intergenic Intergenic 2785 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 215.5-8 chr10 43358074 43358403 + 1 NA Intergenic AluSx1|SINE|Alu -13398 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 142.5-10 chr2 241770567 241770765 + 1 NA Intergenic Intergenic -6156 NM_022134 64090 Hs.632556 NM_022134 ENSG00000154252 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 168.5-10 chr11 128246393 128246679 + 1 NA Intergenic Intergenic 37770 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 345.5-3 chr1 95626222 95626770 + 1 NA Intergenic Intergenic 116380 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 358.5-20 chr4 69500469 69501149 + 1 NA intron (NM_001297616, intron 1 of 6) L1PA13|LINE|L1 -4904 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 207.5-10 chr12 42387350 42387614 + 1 NA exon (NM_001364824, exon 6 of 9) exon (NM_001364824, exon 6 of 9) 55684 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 132.5 chr1 210759877 210760047 + 1 NA intron (NM_002238, intron 10 of 10) MER1B|DNA|hAT-Charlie 373412 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 142.5-4 chr10 58460147 58460333 + 1 NA Intergenic MER63A|DNA|hAT-Blackjack -52632 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 343.5-6 chr11 3732294 3732824 + 1 NA intron (NR_157590, intron 13 of 31) intron (NR_157590, intron 13 of 31) -61175 NM_001303035 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 179.5-11 chr22 41537229 41537518 + 1 NA intron (NM_001018050, intron 2 of 5) intron (NM_001018050, intron 2 of 5) 7097 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 130.5-18 chr3 89272330 89272469 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 164778 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 258.5-14 chr22 37626254 37626628 + 1 NA intron (NM_001172687, intron 11 of 16) intron (NM_001172687, intron 11 of 16) -13228 NM_018957 23616 Hs.601143 NM_018957 ENSG00000100092 SH3BP1 ARHGAP43 SH3 domain binding protein 1 protein-coding 476.5 chr1 113415153 113415877 + 1 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 25000 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 312.5-3 chr10 21640308 21640724 + 1 NA intron (NM_001195626, intron 8 of 22) LTR40b|LTR|ERVL 106344 NM_001195627 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 303.5-11 chr20 3404270 3404716 + 1 NA intron (NM_001009984, intron 1 of 36) intron (NM_001009984, intron 1 of 36) 3169 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 407.5-12 chr2 102846500 102847162 + 1 NA Intergenic Intergenic 48891 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 190.5-4 chr11 21369928 21370201 + 1 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 700478 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 133.5-15 chr3 11311029 11311274 + 1 NA intron (NM_001144912, intron 5 of 16) intron (NM_001144912, intron 5 of 16) 38754 NM_001349235 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 326.5-36 chr8 105415004 105415385 + 1 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 95651 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 144.5-9 chr2 140932283 140932493 + 1 NA intron (NM_018557, intron 20 of 90) MER58A|DNA|hAT-Charlie -345703 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 167.5-11 chr2 53237170 53237501 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -530448 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 181.5-21 chr4 35578008 35578226 + 1 NA Intergenic Intergenic 665822 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 156.5-20 chr3 167087382 167087538 + 1 NA Intergenic Intergenic 188777 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 193.5-28 chr7 26528556 26528858 + 1 NA intron (NR_148500, intron 5 of 5) intron (NR_148500, intron 5 of 5) 10118 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 201.5-2 chr1 203506297 203506498 + 1 NA intron (NM_014359, intron 7 of 7) AluSp|SINE|Alu 12244 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 185.5-9 chr16 62886101 62886349 + 1 NA Intergenic L1MC4a|LINE|L1 -849787 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 163.5-12 chr2 201251678 201251895 + 1 NA intron (NM_033355, intron 2 of 9) AluSz|SINE|Alu -6249 NR_111983 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 121.5-10 chr2 112653675 112653876 + 1 NA intron (NM_005415, intron 5 of 10) intron (NM_005415, intron 5 of 10) 7836 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 126.5-14 chr6 63700715 63700879 + 1 NA intron (NM_001370350, intron 8 of 14) AluSc5|SINE|Alu 54271 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 193.5-25 chr5 36406383 36406721 + 1 NA Intergenic Intergenic -104650 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 206.5-20 chr19 12111398 12111728 + 1 NA exon (NM_001348163, exon 4 of 4) exon (NM_001348163, exon 4 of 4) 19266 NM_001348163 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 147.5-9 chr17 47256677 47256941 + 1 NA intron (NM_000212, intron 1 of 14) intron (NM_000212, intron 1 of 14) 2967 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 199.5-25 chr22 33944649 33944894 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -21883 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 286.5-21 chr20 48616315 48616756 + 1 NA Intergenic Intergenic 211464 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 288.5-35 chr5 147846768 147847336 + 1 NA Intergenic L1MB3|LINE|L1 -7821 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 200.5-6 chr10 8465015 8465302 + 1 NA Intergenic Intergenic 129233 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 200.5-26 chr6 136833624 136833975 + 1 NA intron (NM_000288, intron 3 of 9) intron (NM_000288, intron 3 of 9) 11207 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 207.5-27 chr4 112169451 112169820 + 1 NA intron (NM_152400, intron 1 of 1) intron (NM_152400, intron 1 of 1) 24181 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 257.5-43 chr7 137350897 137351357 + 1 NA Intergenic L1ME2|LINE|L1 -7394 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 128.5-7 chr12 19626161 19626335 + 1 NA Intergenic L1PA17|LINE|L1 185649 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 390.5-31 chr8 79508141 79508699 + 1 NA Intergenic Intergenic -102697 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 168.5-15 chr2 217317451 217317637 + 1 NA intron (NR_133642, intron 4 of 5) intron (NR_133642, intron 4 of 5) 34811 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 128.5-12 chr14 35467592 35467808 + 1 NA Intergenic Intergenic -62946 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 128.5 chr1 11749392 11749560 + 1 NA intron (NM_020350, intron 4 of 4) MIRc|SINE|MIR -12717 NM_001010881 284498 Hs.585415 NM_001010881 C1orf167 - chromosome 1 open reading frame 167 protein-coding 138.5-6 chr11 112749694 112749919 + 1 NA Intergenic L2b|LINE|L2 -194004 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 156.5 chr1 20397273 20397453 + 1 NA intron (NR_033887, intron 6 of 11) AluSz|SINE|Alu 31431 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 267.5-6 chr10 101171944 101172316 + 1 NA Intergenic FRAM|SINE|Alu -4192 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 197.5-36 chr7 1498258 1498506 + 1 NA intron (NM_001080453, intron 10 of 47) intron (NM_001080453, intron 10 of 47) 6007 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 470.5-16 chrX 45644613 45645285 + 1 NA Intergenic Intergenic -86139 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 384.5-14 chr2 100056841 100057485 + 1 NA intron (NM_001025108, intron 2 of 23) AluSx1|SINE|Alu 48420 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 164.5 chr1 81384586 81384831 + 1 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 78313 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 189.5-2 chr1 101783989 101784303 + 1 NA Intergenic Intergenic 62934 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 410.5-4 chr15 38926414 38926904 + 1 NA Intergenic AluY|SINE|Alu 230061 NR_160786 139.5-8 chr18 6137733 6137922 + 1 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -118917 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 259.5-24 chr22 27767701 27768073 + 1 NA intron (NM_002430, intron 1 of 1) MIRb|SINE|MIR 33869 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 215.5-17 chr16 86401130 86401440 + 1 NA Intergenic Intergenic -55606 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 383.5-16 chr4 49096130 49096880 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 109863 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 330.5 chr1 61205130 61205624 + 1 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 48141 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 247.5-29 chr8 5511230 5511504 + 1 NA Intergenic Intergenic -516453 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 304.5-42 chr8 131509485 131510075 + 1 NA Intergenic AluYi6_4d|SINE|Alu -394313 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 276.5-19 chr2 29339898 29340175 + 1 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) -116136 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 265.5-3 chr1 154036997 154037432 + 1 NA intron (NM_001159484, intron 27 of 37) L1MA3|LINE|L1 46452 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 DBA17|MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 122.5-4 chr12 22033406 22033553 + 1 NA Intergenic (ATATTAT)n|Simple_repeat|Simple_repeat -12695 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 185.5-30 chr7 33112313 33112562 + 1 NA Intergenic Intergenic -3033 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 245.5-38 chr8 109824970 109825306 + 1 NA Intergenic L1MA2|LINE|L1 -133347 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 378.5-2 chr1 76197340 76197852 + 1 NA intron (NM_001349108, intron 1 of 3) L2b|LINE|L2 122850 NM_001349105 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 305.5-38 chr7 76308156 76308461 + 1 NA Intergenic AluJo|SINE|Alu 5635 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 223.5-31 chr4 169360164 169360499 + 1 NA Intergenic L1M1|LINE|L1 -89375 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 271.5-37 chr7 955260 955679 + 1 NA promoter-TSS (NM_001284308) promoter-TSS (NM_001284308) -62 NM_001284308 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 301.5-12 chr20 46723162 46723595 + 1 NA intron (NM_030777, intron 1 of 4) intron (NM_030777, intron 1 of 4) 13729 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 208.5-11 chr2 80768469 80768765 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 455238 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 270.5-27 chr6 138132142 138132522 + 1 NA Intergenic L1M1|LINE|L1 -24913 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 170.5-15 chr2 192832448 192832720 + 1 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 82739 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 284.5-16 chr14 64245955 64246515 + 1 NA intron (NM_001271877, intron 4 of 5) THE1C|LTR|ERVL-MaLR 30281 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 220.5-4 chr1 195416444 195416846 + 1 NA Intergenic Intergenic 672070 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 185.5-31 chr7 44244855 44245051 + 1 NA intron (NM_172081, intron 6 of 18) intron (NM_172081, intron 6 of 18) 43975 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 186.5-7 chr12 104183180 104183451 + 1 NA Intergenic MLT1E3|LTR|ERVL-MaLR -32464 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 248.5-7 chr12 38388849 38389276 + 1 NA Intergenic Intergenic 72288 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 138.5-4 chr10 123317053 123317213 + 1 NA Intergenic Intergenic 162731 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 159.5-6 chr10 108668249 108668510 + 1 NA Intergenic Intergenic -599086 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 140.5-2 chr1 84962763 84962941 + 1 NA intron (NM_153259, intron 2 of 13) intron (NM_153259, intron 2 of 13) 34261 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 544.5-10 chr6 47880726 47881512 + 1 NA intron (NM_001013732, intron 2 of 2) intron (NM_001013732, intron 2 of 2) 94051 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 238.5-45 chrX 86720918 86721390 + 1 NA intron (NM_001139515, intron 6 of 11) THE1D-int|LTR|ERVL-MaLR 458186 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 174.5-18 chr2 215140400 215140670 + 1 NA Intergenic L2c|LINE|L2 -1909 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 289.5-30 chr3 193329320 193329845 + 1 NA intron (NM_198505, intron 12 of 29) intron (NM_198505, intron 12 of 29) 22338 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 322.5-8 chr12 26009626 26010165 + 1 NA intron (NM_001164747, intron 2 of 5) L2c|LINE|L2 36140 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 196.5-7 chr12 29240438 29240737 + 1 NA intron (NM_001271784, intron 1 of 10) intron (NM_001271784, intron 1 of 10) 16921 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 421.5 chr1 42477069 42477763 + 1 NA intron (NM_001355224, intron 2 of 22) AluSc|SINE|Alu 14130 NM_001355227 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 266.5-21 chr3 99439006 99439372 + 1 NA Intergenic Intergenic -199405 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 144.5-22 chr7 5371801 5371996 + 1 NA intron (NM_001080495, intron 10 of 29) AluJr|SINE|Alu 51648 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 123.5-11 chr22 19426469 19426605 + 1 NA intron (NM_003325, intron 1 of 24) intron (NM_003325, intron 1 of 24) 5196 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 176.5-29 chr7 23715368 23715641 + 1 NA intron (NM_031414, intron 3 of 23) AluJo|SINE|Alu 5285 NR_048542 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 235.5-28 chr8 126663247 126663588 + 1 NA Intergenic L1MC1|LINE|L1 -104939 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 126.5-11 chr4 160680405 160680607 + 1 NA Intergenic L1ME3F|LINE|L1 -902722 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 146.5-22 chr20 31185134 31185360 + 1 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -72417 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 176.5-34 chr9 94697655 94697832 + 1 NA Intergenic AluSg|SINE|Alu -28926 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 119.5-5 chr14 72198737 72198892 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 265287 NM_001370293 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 154.5-6 chr12 6362868 6363112 + 1 NA intron (NM_001038, intron 3 of 12) intron (NM_001038, intron 3 of 12) -12170 NM_001270987 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 131.5-17 chr20 10654564 10654787 + 1 NA intron (NM_000214, intron 5 of 25) intron (NM_000214, intron 5 of 25) -4980 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 138.5-16 chr6 110748797 110749068 + 1 NA intron (NM_001300964, intron 1 of 12) intron (NM_001300964, intron 1 of 12) -65689 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 192.5-28 chr6 53495280 53495538 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 49692 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 253.5-31 chr7 31400751 31401197 + 1 NA Intergenic Intergenic -60248 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 192.5-7 chr12 52673817 52674112 + 1 NA TTS (NM_006121) TTS (NM_006121) 6443 NM_006121 3848 Hs.80828 NM_006121 ENSG00000167768 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 472.5-8 chr2 52333254 52334047 + 1 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -36998 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 133.5-5 chr12 20494999 20495234 + 1 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -76748 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 158.5-11 chr2 6337954 6338143 + 1 NA Intergenic Intergenic 37374 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 187.5-4 chr10 58974405 58974725 + 1 NA Intergenic MER4D|LTR|ERV1 -24953 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 270.5-31 chr7 108135311 108135581 + 1 NA Intergenic Intergenic -5085 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 423.5-21 chr2 173803878 173804371 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 159756 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 327.5-17 chr4 158354342 158354955 + 1 NA Intergenic Tigger20a|DNA|TcMar-Tigger 144162 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 244.5-42 chr8 119919055 119919378 + 1 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 45494 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 134.5-5 chr12 55397342 55397544 + 1 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -3086 NM_001005518 403282 Hs.554553 NM_001005518 ENSG00000205328 OR6C65 - olfactory receptor family 6 subfamily C member 65 protein-coding 165.5-24 chr8 116801919 116802133 + 1 NA Intergenic AluYm1|SINE|Alu 35502 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 241.5-24 chr3 147445828 147446205 + 1 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 24689 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 283.5-18 chr2 124035587 124035913 + 1 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 10463 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 397.5-18 chr20 33470204 33470817 + 1 NA Intergenic Intergenic -19586 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 160.5-19 chr4 126060814 126061114 + 1 NA Intergenic HERVL-int|LTR|ERVL 553705 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 135.5-16 chr8 104824187 104824370 + 1 NA Intergenic L1M1|LINE|L1 -235254 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 306.5-18 chr17 67080410 67081004 + 1 NA intron (NM_001330447, intron 32 of 32) L2b|LINE|L2 36153 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 207.5-38 chr8 73976826 73977152 + 1 NA intron (NR_033334, intron 1 of 3) intron (NR_033334, intron 1 of 3) 794 NM_017866 54968 Hs.106650 NM_017866 ENSG00000175606 TMEM70 MC5DN2 transmembrane protein 70 protein-coding 155.5-8 chr2 164840573 164840863 + 1 NA promoter-TSS (NR_110574) promoter-TSS (NR_110574) -31 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 219.5-7 chr12 33158307 33158658 + 1 NA Intergenic Intergenic -261636 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 191.5 chr1 43185453 43185735 + 1 NA intron (NM_001195831, intron 5 of 23) AluSz|SINE|Alu -13024 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 151.5-4 chr11 43534730 43534964 + 1 NA Intergenic L1MA3|LINE|L1 -24809 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 232.5-27 chr5 88624783 88625218 + 1 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 41939 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 154.5 chr1 85160472 85160655 + 1 NA intron (NM_032184, intron 6 of 6) intron (NM_032184, intron 6 of 6) 26769 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 291.5-7 chr15 83528577 83529012 + 1 NA intron (NM_001324186, intron 2 of 9) L1MA4A|LINE|L1 38180 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 192.5-32 chr8 122242485 122242866 + 1 NA Intergenic Intergenic 325969 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 202.5-24 chr5 77321867 77322264 + 1 NA intron (NM_001029851, intron 2 of 18) MER74A|LTR|ERVL 111385 NM_001029853 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 317.5-42 chrX 72282021 72282373 + 1 NA Intergenic AluJo|SINE|Alu -4949 NM_001007 6191 Hs.118076 NM_001007 ENSG00000198034 RPS4X CCG2|DXS306|RPS4|S4|SCAR|SCR10 ribosomal protein S4 X-linked protein-coding 214.5-29 chr6 34957256 34957647 + 1 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 68196 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 460.5-19 chr3 45201532 45202441 + 1 NA Intergenic L2c|LINE|L2 24301 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 458.5-15 chr5 57795464 57796164 + 1 NA Intergenic L1M5|LINE|L1 103348 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 170.5-22 chr6 38898790 38899023 + 1 NA intron (NM_001371, intron 60 of 91) L2b|LINE|L2 54201 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 134.5-2 chr1 245029691 245029934 + 1 NA intron (NM_032328, intron 3 of 7) AluSz|SINE|Alu -58943 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 140.5-16 chr21 15361551 15361755 + 1 NA Intergenic Intergenic -296653 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 265.5-5 chr10 72179667 72179980 + 1 NA intron (NM_001369110, intron 5 of 8) intron (NM_001369110, intron 5 of 8) 36133 NM_001369104 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 421.5-19 chr4 113627794 113628320 + 1 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 133681 NM_001321586 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 282.5-2 chr1 78936904 78937340 + 1 NA intron (NM_022159, intron 6 of 14) intron (NM_022159, intron 6 of 14) 69608 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 200.5-13 chr14 63837437 63837741 + 1 NA Intergenic L1M4|LINE|L1 -15376 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 251.5-25 chr7 140717277 140717589 + 1 NA Intergenic AluJb|SINE|Alu -20356 NR_024454 100134713 Hs.534141 NR_024454 ENSG00000240889 NDUFB2-AS1 - NDUFB2 antisense RNA 1 ncRNA 230.5-44 chr6 124434171 124434492 + 1 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 151326 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 124.5-4 chr14 33994266 33994466 + 1 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -43292 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 225.5-5 chr1 210134322 210134663 + 1 NA intron (NM_153262, intron 6 of 7) intron (NM_153262, intron 6 of 7) -98304 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 463.5-27 chr9 37920739 37921405 + 1 NA intron (NM_003028, intron 5 of 5) intron (NM_003028, intron 5 of 5) -16719 NR_024873 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 225.5-11 chr12 42178797 42179156 + 1 NA intron (NR_135139, intron 4 of 6) AluJr4|SINE|Alu -34102 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 238.5-42 chr9 131721330 131721663 + 1 NA intron (NM_001304275, intron 1 of 23) intron (NM_001304275, intron 1 of 23) -11654 NM_198679 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 286.5-19 chr2 133724132 133724663 + 1 NA Intergenic Intergenic -155934 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 140.5-15 chr2 58027162 58027364 + 1 NA intron (NM_001288837, intron 3 of 15) intron (NM_001288837, intron 3 of 15) -19379 NM_001130480 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 199.5-7 chr11 130576334 130576650 + 1 NA Intergenic MIRb|SINE|MIR -90243 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 122.5-7 chr15 84892581 84892819 + 1 NA intron (NM_001287761, intron 4 of 14) intron (NM_001287761, intron 4 of 14) 8038 NM_001321721 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 244.5-13 chr14 54061994 54062369 + 1 NA Intergenic Intergenic -105290 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 132.5-23 chr9 83250459 83250713 + 1 NA intron (NM_001244960, intron 13 of 13) L1PA11|LINE|L1 16682 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 179.5-19 chr7 130874191 130874493 + 1 NA Intergenic Intergenic 2468 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 303.5-5 chr14 38867091 38867513 + 1 NA intron (NR_039982, intron 2 of 4) L2b|LINE|L2 -15294 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 140.5-8 chr12 124096414 124096660 + 1 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 123322 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 147.5-19 chr8 59132644 59132836 + 1 NA Intergenic Intergenic 13530 NR_149031 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 209.5-2 chr1 215391494 215391822 + 1 NA Intergenic Intergenic -175646 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 120.5-9 chr18 12532273 12532502 + 1 NA intron (NM_020148, intron 4 of 15) intron (NM_020148, intron 4 of 15) 99613 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 209.5-26 chr5 57941019 57941397 + 1 NA Intergenic Intergenic -42046 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 185.5-13 chr18 50131863 50132227 + 1 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) -5482 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 159.5-26 chr6 37500035 37500239 + 1 NA promoter-TSS (NM_138493) promoter-TSS (NM_138493) -244 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 125.5-4 chr14 49887728 49887861 + 1 NA Intergenic Intergenic -5288 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 211.5-16 chr19 51035368 51035720 + 1 NA promoter-TSS (NM_019598) promoter-TSS (NM_019598) -542 NM_145895 43849 Hs.411572 NM_019598 ENSG00000186474 KLK12 KLK-L5|KLKL5 kallikrein related peptidase 12 protein-coding 206.5-29 chr4 148711371 148711737 + 1 NA Intergenic MER4D|LTR|ERV1 230824 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 197.5-9 chr11 86324224 86324598 + 1 NA intron (NR_136324, intron 3 of 5) intron (NR_136324, intron 3 of 5) 22171 NR_024598 51501 Hs.283322 NM_016401 ENSG00000149196 HIKESHI C11orf73|HLD13|HSPC138|HSPC179|L7RN6|OPI10 heat shock protein nuclear import factor hikeshi protein-coding 194.5-5 chr11 76409402 76409707 + 1 NA intron (NR_130990, intron 3 of 3) intron (NR_130990, intron 3 of 3) 28231 NM_001305225 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 140.5-12 chr16 67806128 67806268 + 1 NA promoter-TSS (NM_001288991) promoter-TSS (NM_001288991) 362 NM_020850 57610 Hs.368569 NM_020850 ENSG00000141084 RANBP10 - RAN binding protein 10 protein-coding 303.5-25 chr7 64477339 64477684 + 1 NA Intergenic L1MA8|LINE|L1 43818 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 257.5-34 chr5 129969965 129970399 + 1 NA intron (NM_175856, intron 2 of 2) L2b|LINE|L2 65717 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 252.5-11 chr17 33963786 33964212 + 1 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR 192807 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 189.5-24 chr6 22235056 22235327 + 1 NA Intergenic Intergenic 61845 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 227.5-21 chr5 131716283 131716710 + 1 NA intron (NM_133372, intron 6 of 17) intron (NM_133372, intron 6 of 17) 80521 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 117.5-2 chr1 43529342 43529543 + 1 NA intron (NM_001329137, intron 2 of 34) intron (NM_001329137, intron 2 of 34) -1418 NM_001329140 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 232.5-8 chr10 93254007 93254300 + 1 NA Intergenic Intergenic 180260 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 156.5-24 chr7 43169973 43170277 + 1 NA intron (NM_015052, intron 2 of 29) MER1A|DNA|hAT-Charlie 19230 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 169.5-6 chr15 71833774 71834029 + 1 NA intron (NM_006901, intron 39 of 41) L1ME3B|LINE|L1 23347 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 241.5-17 chr17 48366392 48366722 + 1 NA intron (NM_001075099, intron 2 of 12) intron (NM_001075099, intron 2 of 12) 63657 NM_001075099 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 143.5-12 chr2 163970747 163971000 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 -234865 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 418.5-30 chr8 88434763 88435543 + 1 NA Intergenic L1M2|LINE|L1 -107670 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 258.5-18 chr4 72654604 72655007 + 1 NA Intergenic L1ME4c|LINE|L1 -85584 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 266.5-24 chr4 168672806 168673233 + 1 NA intron (NM_001166108, intron 3 of 21) intron (NM_001166108, intron 3 of 21) 41441 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 327.5-12 chr18 23153927 23154514 + 1 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) -1605 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 182.5-7 chr15 65637091 65637345 + 1 NA intron (NM_001301033, intron 4 of 11) intron (NM_001301033, intron 4 of 11) -5661 NM_001254740 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 226.5-15 chr2 82751716 82752156 + 1 NA Intergenic Intergenic -104867 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 246.5-34 chr5 175279614 175280041 + 1 NA Intergenic Intergenic 164355 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 204.5-23 chr22 45231080 45231410 + 1 NA intron (NM_001009880, intron 1 of 9) AluSx1|SINE|Alu 9524 NM_001009880 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 198.5-8 chr17 12267250 12267448 + 1 NA Intergenic L2a|LINE|L2 185450 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 247.5-37 chr8 139741381 139741830 + 1 NA intron (NM_001160372, intron 21 of 22) L1MB8|LINE|L1 -38482 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 477.5-27 chr8 127947960 127948459 + 1 NA non-coding (NR_103558, exon 1 of 1) non-coding (NR_103558, exon 1 of 1) 514 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 214.5-6 chr13 45945013 45945347 + 1 NA Intergenic Intergenic -93427 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 148.5-6 chr10 25284961 25285227 + 1 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -108818 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 171.5-2 chr1 45374061 45374346 + 1 NA intron (NM_007170, intron 4 of 10) intron (NM_007170, intron 4 of 10) -33733 NM_001293192 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 183.5-25 chr5 92994971 92995239 + 1 NA Intergenic MER102a|DNA|hAT-Charlie 576238 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 220.5-5 chr10 120304080 120304472 + 1 NA Intergenic L1MEc|LINE|L1 50947 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 189.5-19 chr3 167375542 167375862 + 1 NA intron (NM_001199202, intron 1 of 20) MARNA|DNA|TcMar-Mariner 4581 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 129.5-2 chr1 98850186 98850360 + 1 NA Intergenic L1PA15|LINE|L1 -154003 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 176.5-5 chr16 86856299 86856553 + 1 NA Intergenic L2b|LINE|L2 134335 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 163.5-17 chr5 170178807 170179050 + 1 NA Intergenic Intergenic 20213 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 156.5-3 chr10 82103108 82103316 + 1 NA intron (NR_163253, intron 2 of 10) L1MEf|LINE|L1 129708 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 296.5-25 chr4 49091252 49091730 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 104849 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 132.5-4 chr10 79398665 79398805 + 1 NA intron (NM_153367, intron 2 of 3) MIRb|SINE|MIR 46889 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 331.5-17 chr22 41740183 41740685 + 1 NA intron (NM_152513, intron 11 of 30) intron (NM_152513, intron 11 of 30) 40931 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 171.5-3 chr1 71771376 71771582 + 1 NA intron (NM_173808, intron 3 of 6) AluSp|SINE|Alu 65533 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 142.5-18 chr7 91154204 91154382 + 1 NA intron (NM_012395, intron 13 of 13) L1ME4a|LINE|L1 -110140 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 187.5-25 chr6 115636179 115636521 + 1 NA intron (NR_134602, intron 1 of 3) L2c|LINE|L2 7485 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 240.5-8 chr17 16118436 16118769 + 1 NA intron (NM_001190440, intron 16 of 44) intron (NM_001190440, intron 16 of 44) 34594 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 163.5-19 chr7 31175763 31176055 + 1 NA Intergenic Intergenic 123448 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 130.5-7 chr16 3941750 3941950 + 1 NA Intergenic AluSx1|SINE|Alu 8594 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 155.5-7 chr2 59020409 59020646 + 1 NA intron (NR_033873, intron 9 of 13) AluSz|SINE|Alu -197181 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 412.5-17 chr20 39820552 39821233 + 1 NA Intergenic Intergenic -183569 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 151.5 chr1 18470249 18470502 + 1 NA Intergenic Intergenic -10555 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 133.5-19 chr4 65113256 65113458 + 1 NA Intergenic L1MCa|LINE|L1 -108857 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 121.5-11 chr20 9639013 9639251 + 1 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -124134 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 281.5-2 chr10 37411484 37411951 + 1 NA Intergenic L1MC1|LINE|L1 102531 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 137.5-15 chr17 17690366 17690528 + 1 NA intron (NM_030665, intron 1 of 5) intron (NM_030665, intron 1 of 5) 8989 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 370.5-18 chr3 127911171 127911722 + 1 NA Intergenic Intergenic -3786 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 453.5-10 chr21 16388433 16389334 + 1 NA intron (NR_027790, intron 4 of 7) MER41C|LTR|ERV1 -30320 NR_136545 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 119.5-13 chr5 39240596 39240825 + 1 NA intron (NM_001243093, intron 1 of 18) L1PA15|LINE|L1 -21147 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 135.5-4 chr15 58982190 58982326 + 1 NA Intergenic (TCTTCT)n|Simple_repeat|Simple_repeat -5405 NM_001330331 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 224.5-7 chr11 94977916 94978215 + 1 NA intron (NM_018039, intron 2 of 2) intron (NM_018039, intron 2 of 2) 4356 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 176.5-36 chrX 42597257 42597492 + 1 NA Intergenic L1PA16|LINE|L1 180789 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 182.5-21 chr4 54857009 54857285 + 1 NA Intergenic Intergenic 199219 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 139.5-14 chr3 76321211 76321457 + 1 NA Intergenic AluSc|SINE|Alu -535785 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 235.5-19 chr3 183860552 183860922 + 1 NA intron (NM_001324437, intron 4 of 7) intron (NM_001324437, intron 4 of 7) 24143 NM_018622 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 223.5-42 chr8 123565271 123565645 + 1 NA Intergenic Intergenic -24252 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 143.5-19 chr4 140745633 140745827 + 1 NA intron (NM_015130, intron 1 of 20) Tigger2a|DNA|TcMar-Tigger 10655 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 181.5-11 chr14 71671944 71672270 + 1 NA intron (NM_001354286, intron 12 of 24) intron (NM_001354286, intron 12 of 24) 85809 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 136.5-11 chr2 188510298 188510515 + 1 NA intron (NM_001252669, intron 4 of 8) intron (NM_001252669, intron 4 of 8) 212914 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 231.5-6 chr16 28889699 28890028 + 1 NA intron (NM_173201, intron 9 of 21) AluSg|SINE|Alu 9820 NM_001286075 487 Hs.657344 NM_004320 ENSG00000196296 ATP2A1 ATP2A|SERCA1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 protein-coding 128.5-13 chr14 72767731 72767983 + 1 NA intron (NM_001280544, intron 2 of 9) L1MDa|LINE|L1 124792 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 204.5-20 chr2 128528482 128528775 + 1 NA Intergenic MIR3|SINE|MIR -209760 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 205.5-8 chr16 57535305 57535592 + 1 NA intron (NM_033212, intron 1 of 8) MIR3|SINE|MIR 1123 NM_033212 92922 Hs.644611 NM_033212 ENSG00000135736 CCDC102A - coiled-coil domain containing 102A protein-coding 208.5-33 chr9 29543954 29544289 + 1 NA Intergenic Intergenic -330520 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 254.5-5 chr11 11351125 11351557 + 1 NA TTS (NM_001256686) TTS (NM_001256686) 1909 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 118.5-17 chrUn_KI270438v1 102005 102180 + 1 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 150.5-14 chr3 52062140 52062322 + 1 NA non-coding (NR_027331, exon 1 of 1) non-coding (NR_027331, exon 1 of 1) 2881 NR_027331 100128378 Hs.640106 NM_001123039 LINC00696 C3orf74 long intergenic non-protein coding RNA 696 ncRNA 358.5-25 chr5 122727402 122727864 + 1 NA intron (NR_109881, intron 2 of 11) AluSc|SINE|Alu 2927 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 142.5-22 chr9 73958664 73958854 + 1 NA Intergenic Intergenic -412772 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 194.5-7 chr12 28119850 28120061 + 1 NA Intergenic AluSx|SINE|Alu -70501 NM_001352082 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 397.5-22 chr3 141142191 141142699 + 1 NA intron (NM_080862, intron 2 of 2) L1PBa|LINE|L1 -89380 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 172.5-10 chr2 62303976 62304179 + 1 NA Intergenic LTR104_Mam|LTR|Gypsy 88556 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 194.5-2 chr1 60453116 60453362 + 1 NA Intergenic Intergenic 169446 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 302.5-24 chr20 57054978 57055532 + 1 NA Intergenic Intergenic -158441 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 161.5-14 chr21 29925951 29926173 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 13934 NM_001320618 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 213.5-13 chr14 39419756 39420041 + 1 NA intron (NM_203301, intron 1 of 3) intron (NM_203301, intron 1 of 3) 12602 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 175.5-28 chr6 39514825 39515043 + 1 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -83544 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 224.5-25 chr5 12299048 12299295 + 1 NA Intergenic L1MA5|LINE|L1 -275686 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 204.5-2 chr1 43317315 43317550 + 1 NA intron (NM_001253357, intron 15 of 22) intron (NM_001253357, intron 15 of 22) 16450 NM_001253357 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 386.5-6 chr12 22742751 22743454 + 1 NA Intergenic Intergenic 117931 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 271.5-13 chr12 122283381 122283779 + 1 NA intron (NM_198240, intron 19 of 23) AluSx1|SINE|Alu -17086 NM_001351019 65082 Hs.487883 NM_022916 ENSG00000139719 VPS33A MPSPS VPS33A core subunit of CORVET and HOPS complexes protein-coding 359.5-33 chr6 21650530 21650956 + 1 NA Intergenic Intergenic -15670 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 162.5-22 chr8 83612048 83612257 + 1 NA Intergenic Intergenic 208394 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 175.5-15 chr2 155221666 155221901 + 1 NA Intergenic Intergenic 523088 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 378.5-32 chr8 120855710 120856283 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -43950 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 322.5-16 chr2 181791624 181792111 + 1 NA Intergenic Intergenic -99863 NM_001287504 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 383.5 chr1 10945212 10945714 + 1 NA Intergenic L2a|LINE|L2 21224 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 173.5-2 chr1 94398747 94399015 + 1 NA Intergenic AluSq2|SINE|Alu -19496 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 157.5-21 chr4 104274319 104274516 + 1 NA Intergenic Intergenic -216548 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 525.5 chr1 177577946 177578767 + 1 NA Intergenic Intergenic -122168 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 115.5-2 chr10 70598389 70598504 + 1 NA exon (NM_005041, exon 3 of 3) exon (NM_005041, exon 3 of 3) 4295 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 249.5-12 chr17 69159009 69159287 + 1 NA intron (NM_080282, intron 28 of 39) L1M4a2|LINE|L1 -17253 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 151.5-6 chr12 109599619 109599872 + 1 NA Intergenic Intergenic 25951 NM_001301182 4598 Hs.130607 NM_000431 ENSG00000110921 MVK LRBP|MK|MVLK|POROK3 mevalonate kinase protein-coding 232.5-30 chr7 105658844 105659208 + 1 NA intron (NM_001318229, intron 3 of 9) AluSg4|SINE|Alu 20129 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 254.5-39 chr4 55106813 55107212 + 1 NA intron (NM_002253, intron 10 of 29) intron (NM_002253, intron 10 of 29) 18583 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 136.5-3 chr10 64814068 64814305 + 1 NA Intergenic Intergenic -11342 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 434.5-16 chr6 67319858 67320405 + 1 NA Intergenic Intergenic -735220 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 284.5-44 chr9 80559409 80559919 + 1 NA Intergenic Intergenic 584641 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 364.5-14 chr2 207155744 207156108 + 1 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 10022 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 127.5-5 chr22 41245726 41245935 + 1 NA 3' UTR (NM_001278651, exon 17 of 17) 3' UTR (NM_001278651, exon 17 of 17) -4899 NM_138481 150356 Hs.344488 NM_138481 ENSG00000100399 CHADL SLRR4B chondroadherin like protein-coding 122.5-10 chr2 52916280 52916505 + 1 NA Intergenic Intergenic -213777 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 307.5-15 chr17 34835433 34835968 + 1 NA Intergenic LTR105_Mam|LTR|ERVL 125760 NM_001193530 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 596.5-4 chr21 29695360 29696168 + 1 NA intron (NM_000830, intron 1 of 16) AluSg|SINE|Alu -52411 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 193.5-13 chr15 97397095 97397468 + 1 NA intron (NR_120324, intron 4 of 4) intron (NR_120324, intron 4 of 4) 124530 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 456.5-9 chr2 29292688 29293288 + 1 NA intron (NM_004304, intron 9 of 28) intron (NM_004304, intron 9 of 28) -69088 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 245.5-31 chr6 53672333 53672733 + 1 NA Intergenic Intergenic -6777 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 160.5-13 chr20 50518294 50518565 + 1 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 8046 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 120.5 chr1 29906862 29907056 + 1 NA Intergenic L2a|LINE|L2 130653 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 131.5-18 chr20 58275745 58276000 + 1 NA intron (NR_003505, intron 3 of 16) L1MB8|LINE|L1 33567 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 207.5 chr1 92294667 92294991 + 1 NA intron (NR_135089, intron 3 of 17) AluSx|SINE|Alu 4158 NM_053274 11146 Hs.49105 NM_007070 ENSG00000174842 GLMN FAP|FAP48|FAP68|FKBPAP|GLML|GVM|VMGLOM glomulin, FKBP associated protein protein-coding 127.5-6 chr4 54256509 54256740 + 1 NA intron (NM_001347828, intron 2 of 23) AluSx3|SINE|Alu 22664 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 163.5-18 chr6 63703455 63703710 + 1 NA exon (NM_015153, exon 10 of 15) exon (NM_015153, exon 10 of 15) 57056 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 151.5-13 chr2 234380774 234380974 + 1 NA Intergenic Intergenic 73721 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 215.5 chr1 21492916 21493259 + 1 NA Intergenic AluJb|SINE|Alu -15897 NM_001369804 249 Hs.75431 NM_000478 ENSG00000162551 ALPL AP-TNAP|APTNAP|HOPS|TNALP|TNAP|TNSALP alkaline phosphatase, biomineralization associated protein-coding 195.5-12 chr15 100298368 100298631 + 1 NA intron (NM_139057, intron 3 of 21) intron (NM_139057, intron 3 of 21) 43476 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 184.5-5 chr11 82705980 82706276 + 1 NA Intergenic MER70B|LTR|ERVL 27736 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 232.5-19 chr2 11981977 11982323 + 1 NA Intergenic LTR16A|LTR|ERVL -24966 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 309.5-23 chr7 27965326 27965834 + 1 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -214877 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 306.5-25 chr3 112016838 112017440 + 1 NA Intergenic Intergenic 17979 NM_001008273 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 131.5-3 chr10 31597173 31597304 + 1 NA Intergenic MLT2B4|LTR|ERVL -197483 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 281.5-28 chr5 39746554 39746988 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 226340 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 340.5-16 chr20 39895546 39896000 + 1 NA Intergenic Intergenic -108688 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 264.5-38 chr8 79674623 79674962 + 1 NA Intergenic AluJr|SINE|Alu 63675 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 191.5-3 chr11 93006265 93006630 + 1 NA Intergenic MER4E1|LTR|ERV1 36824 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 415.5-10 chr21 25330617 25331142 + 1 NA Intergenic AluJo|SINE|Alu 100822 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 236.5 chr1 10553316 10553603 + 1 NA intron (NM_004565, intron 3 of 8) intron (NM_004565, intron 3 of 8) 78509 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 250.5-4 chr10 112532147 112532444 + 1 NA intron (NM_001365710, intron 4 of 7) intron (NM_001365710, intron 4 of 7) -84692 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 243.5-9 chr12 48415688 48416108 + 1 NA Intergenic L2a|LINE|L2 -56767 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 272.5-16 chr17 62728929 62729201 + 1 NA intron (NM_001288780, intron 7 of 10) AluJb|SINE|Alu 22859 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 171.5-8 chr17 56916632 56916886 + 1 NA Intergenic AluSx|SINE|Alu -2710 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 248.5-11 chr17 40834481 40834926 + 1 NA non-coding (NR_160888, exon 3 of 3) non-coding (NR_160888, exon 3 of 3) -12089 NM_000421 3858 Hs.99936 NM_000421 ENSG00000186395 KRT10 BCIE|BIE|CK10|EHK|K10|KPP keratin 10 protein-coding 233.5-30 chr7 84795265 84795625 + 1 NA Intergenic L1PA16|LINE|L1 262969 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 220.5-33 chr7 82513293 82513611 + 1 NA Intergenic Intergenic -69496 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 141.5-18 chr5 128645647 128645885 + 1 NA Intergenic Intergenic -107521 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 186.5-25 chr6 5949369 5949610 + 1 NA Intergenic Intergenic 54555 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 123.5-15 chr7 121249322 121249500 + 1 NA intron (NM_024913, intron 18 of 22) L1PA4|LINE|L1 -75956 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 293.5-33 chr8 61986633 61987175 + 1 NA Intergenic Intergenic 97065 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 162.5-4 chr11 28337414 28337692 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 139995 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 173.5-7 chr11 45170713 45171034 + 1 NA intron (NM_001256695, intron 1 of 7) intron (NM_001256695, intron 1 of 7) 23530 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 133.5-3 chr10 23206270 23206474 + 1 NA intron (NM_001365862, intron 15 of 15) intron (NM_001365862, intron 15 of 15) 14060 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 276.5-27 chr3 36839398 36839854 + 1 NA intron (NM_001329998, intron 18 of 23) L2b|LINE|L2 -17126 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 271.5-36 chr6 162912975 162913370 + 1 NA intron (NM_001080379, intron 2 of 4) L1ME2|LINE|L1 140989 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 129.5-7 chr14 51176020 51176252 + 1 NA Intergenic LTR16E1|LTR|ERVL -64111 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 230.5-11 chr10 103338068 103338299 + 1 NA intron (NM_032154, intron 3 of 6) AluSp|SINE|Alu 12957 NM_032154 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 331.5-7 chr11 112395768 112396196 + 1 NA Intergenic MIR|SINE|MIR -86250 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 302.5-17 chr18 33824643 33825175 + 1 NA Intergenic L2|LINE|L2 223703 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 181.5-15 chr16 52321131 52321380 + 1 NA Intergenic Intergenic 62691 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 232.5-3 chr1 182714499 182714881 + 1 NA TTS (NR_146548) TTS (NR_146548) 1828 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 199.5-17 chr2 29361870 29362179 + 1 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 113353 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 167.5-19 chr4 173344427 173344699 + 1 NA Intergenic Intergenic -10205 NM_002129 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 324.5-28 chr3 120764274 120764640 + 1 NA intron (NM_005513, intron 2 of 4) intron (NM_005513, intron 2 of 4) 21713 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 139.5-4 chr10 42190811 42190973 + 1 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 177153 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 194.5-13 chr2 14243624 14243927 + 1 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 157183 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 115.5-19 chr7 52066534 52066694 + 1 NA Intergenic L1MC5a|LINE|L1 -673358 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 136.5-13 chr3 79088180 79088435 + 1 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -68848 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 291.5-2 chr1 236987890 236988194 + 1 NA Intergenic Intergenic 16399 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 296.5-35 chr7 30029353 30029828 + 1 NA intron (NM_001363473, intron 1 of 12) L2b|LINE|L2 1178 NM_001350974 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 278.5-21 chr5 125971905 125972301 + 1 NA Intergenic Intergenic -207474 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 197.5-3 chr1 111480808 111481121 + 1 NA Intergenic LTR79|LTR|ERVL 6980 NM_001300835 128346 Hs.288010 NM_174896 ENSG00000143110 C1orf162 - chromosome 1 open reading frame 162 protein-coding 176.5-35 chrUn_GL000216v2 1787 2050 + 1 NA NA (CATTC)n|Satellite|Satellite NA NA 134.5-12 chr3 43992094 43992297 + 1 NA Intergenic L1MD2|LINE|L1 -122017 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 330.5-3 chr1 162685337 162685873 + 1 NA intron (NM_006182, intron 2 of 17) MIR3|SINE|MIR 53141 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 152.5-8 chr11 54541214 54541413 + 1 NA Intergenic ALR/Alpha|Satellite|centr 62685 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 200.5-5 chr1 244479674 244480062 + 1 NA intron (NM_001242340, intron 4 of 18) Tigger19b|DNA|TcMar-Tigger 18497 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 233.5-3 chr12 125651883 125652176 + 1 NA intron (NM_052907, intron 7 of 8) MLT1E2|LTR|ERVL-MaLR 29577 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 131.5-16 chr2 56290881 56291112 + 1 NA intron (NM_001348516, intron 2 of 2) MER103C|DNA|hAT-Charlie -105226 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 241.5-37 chr8 106376164 106376467 + 1 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -71609 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 219.5-3 chr10 57095445 57095857 + 1 NA Intergenic MER52A|LTR|ERV1 208908 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 198.5-26 chrX 75063131 75063390 + 1 NA intron (NM_001271699, intron 12 of 14) intron (NM_001271699, intron 12 of 14) 93023 NM_001271699 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 115.5-22 chr8 129953788 129953983 + 1 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -14074 NM_001353313 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 138.5-17 chr7 3048632 3048830 + 1 NA Intergenic Intergenic -4864 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 297.5-32 chr7 132153659 132154097 + 1 NA intron (NM_020911, intron 25 of 31) intron (NM_020911, intron 25 of 31) -106983 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 265.5-9 chr12 68800460 68800833 + 1 NA Intergenic Intergenic 4848 NR_073494 100130075 Hs.744781 NR_073494 LOC100130075 - SUZ RNA binding domain containing 1 pseudogene pseudo 263.5-9 chr18 65515852 65516281 + 1 NA Intergenic Intergenic -234186 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 206.5-4 chr10 75895812 75896057 + 1 NA intron (NR_131178, intron 3 of 7) MIR|SINE|MIR 113173 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 276.5-18 chr19 31861858 31862244 + 1 NA Intergenic L1MEg|LINE|L1 -163811 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 228.5-29 chr5 51108971 51109330 + 1 NA Intergenic Intergenic -138963 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 263.5-2 chr1 176993254 176993697 + 1 NA intron (NM_207108, intron 8 of 21) intron (NM_207108, intron 8 of 21) 35970 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 134.5-16 chr4 93882898 93883073 + 1 NA Intergenic L2|LINE|L2 54232 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 146.5-34 chr8 101369622 101369896 + 1 NA TTS (NR_002182) TTS (NR_002182) 866 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 211.5-7 chr13 55285715 55286044 + 1 NA Intergenic Intergenic 111425 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 201.5-17 chr2 6792113 6792407 + 1 NA Intergenic Intergenic -21949 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 220.5-11 chr14 26790932 26791354 + 1 NA intron (NR_147061, intron 6 of 6) intron (NR_147061, intron 6 of 6) -18205 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 143.5 chr1 68312618 68312812 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -80169 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 146.5-8 chr12 41484508 41484738 + 1 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 46884 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 218.5-6 chr12 2123922 2124321 + 1 NA intron (NM_199460, intron 3 of 49).2 (GT)n|Simple_repeat|Simple_repeat 70836 NM_001167624 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 495.5-3 chr10 52806693 52807522 + 1 NA Intergenic AluSz|SINE|Alu -35407 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 169.5-3 chr11 77036179 77036484 + 1 NA intron (NM_138706, intron 1 of 1) intron (NM_138706, intron 1 of 1) 1933 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 120.5-3 chr10 64817622 64817845 + 1 NA Intergenic Intergenic -7795 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 263.5-17 chr3 4535711 4536151 + 1 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 42583 NM_001099952 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 196.5-36 chrX 146579975 146580171 + 1 NA Intergenic L1PBb|LINE|L1 -229698 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 117.5-19 chr7 4206633 4206785 + 1 NA intron (NM_001079653, intron 10 of 19) intron (NM_001079653, intron 10 of 19) -71872 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 199.5-24 chr20 37997647 37998028 + 1 NA intron (NM_001303457, intron 5 of 7) intron (NM_001303457, intron 5 of 7) 35619 NM_001303457 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 159.5-20 chr21 26129832 26130074 + 1 NA intron (NM_001136131, intron 1 of 15) intron (NM_001136131, intron 1 of 15) 10437 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 268.5-18 chr22 48549003 48549525 + 1 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -1877 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 218.5-7 chr12 89439755 89440008 + 1 NA intron (NM_172240, intron 10 of 11) AluSx|SINE|Alu 84915 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 146.5-37 chr9 71023572 71023718 + 1 NA intron (NM_001366143, intron 1 of 25) L1MD2|LINE|L1 97976 NM_001366146 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 283.5-23 chr22 40209374 40209768 + 1 NA intron (NM_015088, intron 1 of 20) intron (NM_015088, intron 1 of 20) 31646 NM_015088 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 302.5-13 chr13 30730862 30731299 + 1 NA intron (NM_001204406, intron 1 of 5) intron (NM_001204406, intron 1 of 5) -4428 NM_001629 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 256.5-27 chr5 29607833 29608275 + 1 NA Intergenic Intergenic -212078 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 337.5-17 chr2 210193337 210193709 + 1 NA intron (NM_001608, intron 9 of 10) intron (NM_001608, intron 9 of 10) -22114 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 115.5-11 chr3 34622412 34622602 + 1 NA Intergenic L1MB4|LINE|L1 771516 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 202.5-25 chr5 140849389 140849650 + 1 NA exon (NM_014005, exon 1 of 1) exon (NM_014005, exon 1 of 1) 1747 NM_014005 9752 Hs.199343 NM_014005 ENSG00000204961 PCDHA9 PCDH-ALPHA9 protocadherin alpha 9 protein-coding 381.5-12 chr2 181177197 181177595 + 1 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 53559 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 307.5-22 chr20 42908062 42908613 + 1 NA intron (NM_133170, intron 1 of 31) Arthur1|DNA|hAT-Tip100 -60406 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 251.5-11 chr15 48340231 48340715 + 1 NA intron (NM_001025248, intron 4 of 6) intron (NM_001025248, intron 4 of 6) 8276 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 292.5-33 chr8 138069958 138070403 + 1 NA intron (NR_161374, intron 1 of 7) L1MD2|LINE|L1 13365 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 484.5-26 chr9 103604869 103605494 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -280148 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 181.5-20 chr3 25302689 25302935 + 1 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -37990 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 360.5-4 chr12 43079694 43080269 + 1 NA Intergenic Intergenic -75334 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 437.5-4 chr11 114547846 114548347 + 1 NA intron (NM_152315, intron 2 of 5) L1M5|LINE|L1 11785 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 384.5-8 chr12 1299828 1300322 + 1 NA intron (NR_027948, intron 15 of 19) L1PB3|LINE|L1 -200416 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 293.5-4 chr11 129777922 129778425 + 1 NA Intergenic L1MC1|LINE|L1 -37608 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 191.5-8 chr16 25563823 25564014 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -128041 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 338.5-17 chr2 1148519 1149174 + 1 NA intron (NM_018968, intron 6 of 16) intron (NM_018968, intron 6 of 16) -197454 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 114.5-7 chr12 212380 212607 + 1 NA intron (NM_001122848, intron 1 of 15) intron (NM_001122848, intron 1 of 15) 1209 NM_003044 6539 Hs.437174 NM_003044 ENSG00000111181 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 member 12 protein-coding 196.5-11 chr16 76972458 76972777 + 1 NA Intergenic Intergenic 103681 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 203.5-28 chr7 34032964 34033332 + 1 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 127609 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 270.5-38 chrX 127200913 127201308 + 1 NA Intergenic Intergenic 381381 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 167.5-14 chr20 40298129 40298296 + 1 NA Intergenic Intergenic 293751 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 300.5-23 chr2 120868627 120868973 + 1 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 76519 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 231.5-25 chr5 109143352 109143758 + 1 NA intron (NR_146155, intron 17 of 19) L2a|LINE|L2 182814 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 113.5-12 chr8 121402067 121402211 + 1 NA Intergenic Intergenic -237207 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 171.5-33 chr9 109675869 109676150 + 1 NA intron (NM_001037293, intron 1 of 6) L1M6|LINE|L1 35221 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 200.5-16 chr17 32638840 32639137 + 1 NA intron (NM_015194, intron 19 of 21) intron (NM_015194, intron 19 of 21) 151995 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 406.5-16 chr20 6829091 6829498 + 1 NA Intergenic Intergenic 61608 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 230.5-33 chr3 107367763 107368092 + 1 NA Intergenic Intergenic -9512 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 221.5-8 chr14 44400066 44400439 + 1 NA Intergenic L1MA3|LINE|L1 107031 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 262.5-9 chr16 85463129 85463579 + 1 NA Intergenic Intergenic -148055 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 217.5-16 chr17 51489015 51489293 + 1 NA Intergenic Intergenic 53727 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 367.5-37 chr8 75984120 75984652 + 1 NA Intergenic MIR|SINE|MIR -422268 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 236.5-21 chr2 195003264 195003595 + 1 NA Intergenic Intergenic 272834 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 159.5-7 chr10 108833460 108833691 + 1 NA Intergenic L1MB8|LINE|L1 -764282 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 247.5-9 chr12 8052836 8053275 + 1 NA 3' UTR (NM_018416, exon 11 of 11) 3' UTR (NM_018416, exon 11 of 11) 13304 NM_004054 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 121.5-4 chr15 57490662 57490880 + 1 NA intron (NM_032866, intron 8 of 18) L1MC3|LINE|L1 -101133 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 361.5-28 chr6 118153256 118153843 + 1 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 67646 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 191.5-2 chr1 190199391 190199735 + 1 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 276447 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 204.5-14 chr14 87177869 87178178 + 1 NA Intergenic Intergenic 272245 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 223.5-29 chr3 178128469 178128880 + 1 NA Intergenic L1MB8|LINE|L1 -290527 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 187.5-31 chr8 49674760 49675038 + 1 NA Intergenic L1MD2|LINE|L1 -162719 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 263.5-23 chr6 72695166 72695490 + 1 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 64833 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 161.5-5 chr12 58843438 58843654 + 1 NA Intergenic Intergenic -61830 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 119.5-3 chr14 46369503 46369734 + 1 NA intron (NR_102702, intron 3 of 3) MER117|DNA|hAT-Charlie -101741 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 248.5-27 chr7 16559540 16559944 + 1 NA intron (NM_001195280, intron 5 of 8) L1MB8|LINE|L1 32917 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 161.5-3 chr11 83204488 83204649 + 1 NA intron (NM_001300975, intron 2 of 10) L1PA17|LINE|L1 10856 NM_001300975 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 194.5-23 chr5 62853973 62854214 + 1 NA Intergenic Intergenic 275274 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 282.5-16 chr16 1744965 1745485 + 1 NA intron (NM_001040439, intron 5 of 30) intron (NM_001040439, intron 5 of 30) 10240 NR_036138 100423012 NR_036138 ENSG00000265820 MIR3177 mir-3177 microRNA 3177 ncRNA 234.5-26 chr5 131225059 131225460 + 1 NA Intergenic Intergenic -38750 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 269.5-47 chr6 152376216 152376683 + 1 NA exon (NM_033071, exon 58 of 146) exon (NM_033071, exon 58 of 146) -4081 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 156.5-6 chr12 40777416 40777674 + 1 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -50393 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 145.5-29 chr8 127861215 127861499 + 1 NA intron (NR_003367, intron 1 of 8) AluSx|SINE|Alu 65395 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 181.5-7 chr12 24727703 24727953 + 1 NA Intergenic L2a|LINE|L2 -143660 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 159.5-11 chr12 112707830 112707999 + 1 NA intron (NM_001347952, intron 1 of 21) LTR26B|LTR|ERV1 -12738 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 177.5-16 chr20 8087419 8087732 + 1 NA Intergenic L1ME1|LINE|L1 -44691 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 429.5-8 chr19 17812897 17813585 + 1 NA 3' UTR (NM_014256, exon 3 of 3) 3' UTR (NM_014256, exon 3 of 3) 8278 NM_001265587 3640 Hs.37062 NM_005543 ENSG00000248099 INSL3 RLF|RLNL|ley-I-L insulin like 3 protein-coding 329.5-20 chr7 27037510 27037940 + 1 NA Intergenic AluSz|SINE|Alu 58275 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 267.5-13 chr20 16118413 16118809 + 1 NA Intergenic L1PA13|LINE|L1 -132729 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 300.5-39 chr8 136430544 136430968 + 1 NA Intergenic L1M1|LINE|L1 -100042 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 172.5-7 chr12 90262586 90262823 + 1 NA Intergenic Intergenic -30614 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 227.5-34 chr8 136404829 136405150 + 1 NA Intergenic L1MA5|LINE|L1 -125809 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 112.5-10 chr20 58726618 58726799 + 1 NA Intergenic MER58C|DNA|hAT-Charlie 33908 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 128.5-24 chr5 167693045 167693295 + 1 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -61759 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 367.5-9 chr12 40002731 40003197 + 1 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 103117 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 167.5-27 chr8 135515922 135516125 + 1 NA intron (NM_006558, intron 1 of 8) Tigger3c|DNA|TcMar-Tigger 58567 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 205.5-34 chr8 108435031 108435367 + 1 NA Intergenic Intergenic -8384 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 149.5-3 chr11 78592185 78592383 + 1 NA Intergenic L2a|LINE|L2 -17420 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 114.5-10 chr3 84100915 84101095 + 1 NA Intergenic L1MD2|LINE|L1 768570 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 288.5-3 chr1 102678577 102679027 + 1 NA Intergenic Intergenic 429694 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 296.5-18 chr20 13930211 13930691 + 1 NA intron (NR_073206, intron 3 of 20) LTR33|LTR|ERVL 60163 NR_073206 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 341.5-20 chr2 234578564 234579068 + 1 NA Intergenic Intergenic -81735 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 170.5-27 chr9 33912101 33912271 + 1 NA intron (NM_017811, intron 4 of 4) intron (NM_017811, intron 4 of 4) 22178 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 157.5-18 chr3 127371679 127371947 + 1 NA intron (NR_110147, intron 1 of 4) intron (NR_110147, intron 1 of 4) 18857 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 202.5-31 chr8 68590215 68590541 + 1 NA intron (NR_146186, intron 7 of 12) LTR81A|LTR|Gypsy -258887 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 238.5-36 chr7 22831265 22831676 + 1 NA Intergenic Intergenic -8621 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 238.5-25 chr4 11506718 11507185 + 1 NA Intergenic Intergenic -78057 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 174.5-28 chr5 6550090 6550264 + 1 NA Intergenic L1MB8|LINE|L1 -31959 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 227.5-16 chr3 190611328 190611694 + 1 NA intron (NR_157352, intron 5 of 10) L1MC5|LINE|L1 97426 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 217.5-32 chr8 90531287 90531618 + 1 NA Intergenic Intergenic 74611 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 141.5-13 chr18 13642505 13642735 + 1 NA 5' UTR (NM_001276251, exon 1 of 3) 5' UTR (NM_001276251, exon 1 of 3) 862 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 316.5-18 chr3 182406192 182406628 + 1 NA Intergenic Intergenic 79952 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 269.5-25 chr21 40242961 40243435 + 1 NA intron (NR_073202, intron 11 of 32) intron (NR_073202, intron 11 of 32) -30767 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 116.5-21 chr9 31080074 31080236 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 301335 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 149.5-10 chr22 45188529 45188772 + 1 NA TTS (NM_007172) TTS (NM_007172) 2962 NR_146602 105373064 NR_146602 LOC105373064 - uncharacterized LOC105373064 ncRNA 271.5-3 chr1 61114704 61115153 + 1 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 32367 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 129.5-17 chr5 174932384 174932552 + 1 NA intron (NR_046113, intron 2 of 2) intron (NR_046113, intron 2 of 2) 63263 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 459.5-5 chr11 109608982 109609757 + 1 NA Intergenic Intergenic 187179 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 419.5-10 chr17 60502473 60502921 + 1 NA intron (NM_006380, intron 1 of 12) AluSx1|SINE|Alu 23543 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 131.5-15 chr2 45673475 45673678 + 1 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 21901 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 172.5-8 chr14 49233697 49234038 + 1 NA Intergenic L1PA16|LINE|L1 352513 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 199.5-36 chr8 70025242 70025558 + 1 NA Intergenic Intergenic 45852 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 116.5-8 chr21 25322449 25322601 + 1 NA Intergenic Intergenic 109176 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 120.5-4 chr11 67253140 67253295 + 1 NA intron (NR_027473, intron 18 of 20) intron (NR_027473, intron 18 of 20) 13203 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 324.5-22 chr2 102217800 102218249 + 1 NA intron (NM_001351447, intron 4 of 9) L1M2|LINE|L1 30710 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 300.5-41 chr9 100171505 100171977 + 1 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 72498 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 113.5-8 chr20 58573925 58574069 + 1 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -58598 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 130.5-19 chr4 70506172 70506429 + 1 NA Intergenic LTR85c|LTR|Gypsy? -12269 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 129.5-4 chr10 17848564 17848816 + 1 NA intron (NM_002438, intron 6 of 29) intron (NM_002438, intron 6 of 29) 3583 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 147.5-12 chr3 192042616 192042767 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -195939 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 137.5-7 chr12 23872644 23872905 + 1 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 76896 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 282.5-3 chr1 104268008 104268381 + 1 NA Intergenic L2a|LINE|L2 195171 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 266.5-22 chr4 33625918 33626437 + 1 NA Intergenic Intergenic 413716 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 362.5-15 chr18 44966616 44967195 + 1 NA intron (NM_015559, intron 4 of 5) MIRb|SINE|MIR 3261 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 157.5-16 chr3 32872183 32872478 + 1 NA intron (NM_001039111, intron 1 of 3) intron (NM_001039111, intron 1 of 3) 54333 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 175.5-23 chr4 14101887 14102225 + 1 NA Intergenic L2a|LINE|L2 -9912 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 225.5-14 chr14 64050794 64051172 + 1 NA intron (NM_015180, intron 47 of 114) AluSz|SINE|Alu 44142 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 180.5-4 chr11 112644911 112645170 + 1 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -89238 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 300.5-34 chr5 83581046 83581355 + 1 NA 3' UTR (NM_004385, exon 15 of 15) 3' UTR (NM_004385, exon 15 of 15) -18886 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 380.5-16 chr2 184610979 184611655 + 1 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 12788 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 327.5-5 chr14 77804383 77804907 + 1 NA intron (NR_158988, intron 1 of 10) intron (NR_158988, intron 1 of 10) 4536 NM_001366485 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 345.5-10 chr12 76426480 76427121 + 1 NA intron (NM_001003712, intron 3 of 22) intron (NM_001003712, intron 3 of 22) -3515 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 156.5-15 chr20 24468852 24469120 + 1 NA promoter-TSS (NM_001323606) promoter-TSS (NM_001323606) -213 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 181.5-9 chr13 83827373 83827657 + 1 NA Intergenic Intergenic 54878 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 236.5-10 chr12 2620974 2621271 + 1 NA intron (NM_001129840, intron 29 of 46) L2b|LINE|L2 51098 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 208.5-19 chr22 25109830 25110188 + 1 NA non-coding (NR_038941, exon 4 of 5) non-coding (NR_038941, exon 4 of 5) 2683 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 317.5-22 chr21 16871706 16872237 + 1 NA Intergenic Intergenic 281734 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 386.5-7 chr13 68260183 68260764 + 1 NA Intergenic MER61-int|LTR|ERV1 624852 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 271.5-5 chr1 211833741 211834196 + 1 NA intron (NR_135818, intron 2 of 2) AluSz6|SINE|Alu 3007 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 215.5-36 chr6 54787437 54787829 + 1 NA Intergenic L1MA8|LINE|L1 -59138 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 186.5-28 chr7 134231136 134231447 + 1 NA intron (NM_144648, intron 16 of 19) intron (NM_144648, intron 16 of 19) 85639 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 203.5-9 chr14 58513037 58513358 + 1 NA intron (NM_001329945, intron 29 of 29) intron (NM_001329945, intron 29 of 29) 73516 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 205.5-31 chr7 41699680 41699968 + 1 NA intron (NR_027118, intron 1 of 3) intron (NR_027118, intron 1 of 3) 3266 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 339.5-34 chrX 97732149 97732648 + 1 NA Intergenic L2a|LINE|L2 -167863 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 188.5-8 chr17 40691543 40691864 + 1 NA Intergenic Intergenic 12049 NM_019016 192666 Hs.87383 NM_019016 ENSG00000167916 KRT24 K24|KA24 keratin 24 protein-coding 148.5 chr1 41281687 41281854 + 1 NA Intergenic Intergenic -39464 NM_001172219 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 174.5-36 chr9 133584418 133584658 + 1 NA Intergenic Intergenic -4292 NM_001080515 642968 Hs.173134 NM_001080515 ENSG00000196990 FAM163B C9orf166 family with sequence similarity 163 member B protein-coding 247.5-19 chr3 88845834 88846159 + 1 NA Intergenic Intergenic -261625 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 177.5-17 chr3 4462966 4463184 + 1 NA intron (NM_001164674, intron 1 of 7) intron (NM_001164674, intron 1 of 7) 4194 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 117.5-20 chr8 3423397 3423548 + 1 NA intron (NM_033225, intron 12 of 69) L1ME2|LINE|L1 -695021 NR_125426 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 160.5-9 chr15 75584380 75584593 + 1 NA Intergenic Intergenic -5171 NM_002833 5780 Hs.445775 NM_002833 ENSG00000169410 PTPN9 MEG2|PTPMEG2 protein tyrosine phosphatase non-receptor type 9 protein-coding 156.5-7 chr14 67019588 67019832 + 1 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -169730 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 220.5-36 chr8 125504006 125504423 + 1 NA Intergenic Intergenic 72005 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 157.5-12 chr2 219495460 219495728 + 1 NA promoter-TSS (NM_001286811) promoter-TSS (NM_001286811) -761 NM_001286811 100996693 Hs.21639 NM_001286811 ENSG00000286095 SPEGNB - SPEG neighbor protein-coding 289.5-19 chr17 74392089 74392546 + 1 NA Intergenic Intergenic 24811 NM_001331076 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 157.5-7 chr17 3592358 3592540 + 1 NA 5' UTR (NM_080706, exon 1 of 15) 5' UTR (NM_080706, exon 1 of 15) 428 NM_080706 7442 Hs.579217 NM_018727 ENSG00000196689 TRPV1 VR1 transient receptor potential cation channel subfamily V member 1 protein-coding 178.5-3 chr14 54313825 54314123 + 1 NA Intergenic Intergenic -82894 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 400.5-14 chr21 33111113 33111753 + 1 NA TTS (NR_109961) TTS (NR_109961) 12267 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 178.5-12 chr22 41279038 41279348 + 1 NA intron (NM_001317930, intron 2 of 15) AluSx1|SINE|Alu 6994 NM_001278651 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 114.5-14 chr8 137891504 137891621 + 1 NA intron (NR_161374, intron 2 of 7) LTR32|LTR|ERVL 191983 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 228.5-7 chr11 62646829 62647123 + 1 NA promoter-TSS (NM_198334) promoter-TSS (NM_198334) -250 NM_001278194 23193 Hs.595071 NM_014610 ENSG00000089597 GANAB G2AN|GIIA|GLUII|PKD3 glucosidase II alpha subunit protein-coding 146.5-17 chr2 66863951 66864227 + 1 NA Intergenic MIRb|SINE|MIR -40347 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 127.5-9 chr6 50356076 50356248 + 1 NA Intergenic L1PB3|LINE|L1 -306233 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 300.5-33 chr5 67870220 67870685 + 1 NA Intergenic L1ME2|LINE|L1 77239 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 266.5-5 chr10 63106812 63107315 + 1 NA Intergenic MER21C|LTR|ERVL -26184 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 328.5-18 chr2 9647502 9647979 + 1 NA Intergenic MIRc|SINE|MIR -16743 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 204.5-16 chr15 24963529 24963844 + 1 NA intron (NM_001349454, intron 7 of 13) intron (NM_001349454, intron 7 of 13) 8694 NM_001349465 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 146.5-33 chr7 111402023 111402169 + 1 NA intron (NM_032549, intron 3 of 5) FAM|SINE|Alu 160195 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 234.5-6 chr10 113566554 113566893 + 1 NA intron (NM_004132, intron 1 of 12) L2a|LINE|L2 13670 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 250.5-28 chr3 111622167 111622558 + 1 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -27016 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 144.5-13 chr3 169642831 169643026 + 1 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 20784 NM_001366473 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 133.5-10 chr15 51386241 51386500 + 1 NA intron (NM_001330297, intron 4 of 9) intron (NM_001330297, intron 4 of 9) 9124 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 120.5-6 chr14 71023495 71023666 + 1 NA intron (NM_014982, intron 13 of 35) intron (NM_014982, intron 13 of 35) 116121 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 186.5-3 chr1 108588775 108589099 + 1 NA intron (NM_001010883, intron 1 of 10) intron (NM_001010883, intron 1 of 10) 28837 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 222.5-23 chr4 172128693 172129006 + 1 NA intron (NM_001034845, intron 2 of 12) MER65-int|LTR|ERV1 -315242 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 236.5-5 chr1 163278634 163279038 + 1 NA intron (NM_001254748, intron 2 of 5) L1MA5|LINE|L1 42955 NR_045630 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 239.5-23 chr8 121456196 121456618 + 1 NA Intergenic Intergenic -182939 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 137.5-20 chr4 123107148 123107333 + 1 NA intron (NM_001345856, intron 14 of 15) MER52A|LTR|ERV1 184162 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 213.5-18 chr18 22088496 22088774 + 1 NA Intergenic LTR33A_|LTR|ERVL 80333 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 348.5-20 chr4 70986115 70986668 + 1 NA 3' UTR (NM_001244766, exon 7 of 7) 3' UTR (NM_001244766, exon 7 of 7) -7258 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 203.5-4 chr1 194013279 194013596 + 1 NA Intergenic AluSz6|SINE|Alu 708692 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 289.5-9 chr1 194489662 194490126 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 1185149 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 190.5-17 chr7 53453904 53454190 + 1 NA Intergenic Intergenic 357884 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 228.5-3 chr1 173853540 173853924 + 1 NA intron (NM_001365212, intron 13 of 15) intron (NM_001365212, intron 13 of 15) -9516 NR_037605 100506046 Hs.656411 NR_037605 GAS5-AS1 - GAS5 antisense RNA 1 ncRNA 142.5-6 chr16 31197058 31197214 + 1 NA Intergenic Intergenic -4749 NR_102400 100652740 Hs.550659 NR_102400 ENSG00000261359 PYCARD-AS1 C16orf98|PYCARDOS PYCARD antisense RNA 1 ncRNA 117.5-14 chr21 24136632 24136841 + 1 NA Intergenic Intergenic 184641 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 307.5-6 chr10 108573479 108573952 + 1 NA Intergenic Intergenic -504422 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 237.5-29 chrX 45384053 45384342 + 1 NA Intergenic Intergenic -121191 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 208.5-4 chr10 124536537 124536824 + 1 NA intron (NM_022126, intron 6 of 6) intron (NM_022126, intron 6 of 6) 74857 NM_022126 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 139.5-10 chr2 44247391 44247555 + 1 NA Intergenic Intergenic -28007 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 191.5-11 chr19 30489103 30489396 + 1 NA intron (NM_014717, intron 2 of 4) L1ME4a|LINE|L1 116865 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 182.5-25 chr5 59266521 59266835 + 1 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 9437 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 372.5-3 chr10 117520627 117521274 + 1 NA intron (NR_002791, intron 2 of 3) AluJo|SINE|Alu -21495 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 195.5-8 chr11 62951648 62952036 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -30479 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 137.5-12 chr14 79696582 79696800 + 1 NA intron (NR_073547, intron 17 of 20) intron (NR_073547, intron 17 of 20) 417311 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 202.5-10 chr13 72814995 72815310 + 1 NA intron (NR_146206, intron 5 of 16) L1M5|LINE|L1 33019 NM_006346 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 137.5 chr1 116013057 116013304 + 1 NA intron (NM_018420, intron 2 of 11) Tigger5b|DNA|TcMar-Tigger -35904 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 168.5-29 chr7 49632984 49633269 + 1 NA Intergenic Intergenic -140512 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 172.5-23 chr9 69916580 69916872 + 1 NA Intergenic L2|LINE|L2 95909 NR_131757 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 272.5-9 chr12 122213842 122214187 + 1 NA intron (NM_001371333, intron 5 of 5) AluSx1|SINE|Alu 10305 NM_030765 79369 Hs.363315 NM_030765 ENSG00000176383 B3GNT4 B3GN-T4|beta3Gn-T4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding 276.5-36 chr6 162950398 162950830 + 1 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 103547 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 286.5-4 chr1 219199338 219199846 + 1 NA intron (NM_001300770, intron 3 of 4) AluSx3|SINE|Alu 24623 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 427.5-24 chr6 170585355 170586194 + 1 NA Intergenic AluSx3|SINE|Alu -1082 NM_001199461 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 263.5-10 chr18 75668927 75669404 + 1 NA Intergenic Intergenic 43238 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 253.5-26 chr5 20090508 20091010 + 1 NA intron (NM_001291956, intron 2 of 14) AluJb|SINE|Alu -102559 NM_001167667 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 114.5-8 chr15 98130648 98130828 + 1 NA Intergenic Intergenic -41985 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 274.5-20 chr6 143066661 143067171 + 1 NA intron (NM_001366355, intron 1 of 4) AluJo|SINE|Alu 6027 NM_001366350 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 211.5-26 chr3 113146397 113146645 + 1 NA intron (NR_110823, intron 3 of 3) intron (NR_110823, intron 3 of 3) 21210 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 268.5-6 chr12 7927082 7927410 + 1 NA intron (NM_006931, intron 6 of 9) intron (NM_006931, intron 6 of 9) 8941 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 124.5-12 chr5 82823476 82823634 + 1 NA Intergenic Intergenic -16600 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 245.5-25 chr5 31476517 31476987 + 1 NA intron (NM_013235, intron 15 of 34) intron (NM_013235, intron 15 of 34) 55341 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 119.5-12 chr4 49103496 49103685 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 116948 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 289.5-42 chr9 85179642 85180034 + 1 NA Intergenic Intergenic 473937 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 375.5-7 chr14 50950764 50951483 + 1 NA Intergenic Intergenic -6640 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 315.5-7 chr11 115139552 115140084 + 1 NA Intergenic Intergenic -193759 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 281.5-14 chr19 5020217 5020747 + 1 NA intron (NM_001370094, intron 2 of 10) L1MB7|LINE|L1 51369 NM_001370094 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 260.5-31 chr6 40095372 40095850 + 1 NA Intergenic Intergenic -161149 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 131.5-25 chr5 148028600 148028787 + 1 NA Intergenic L1MEg2|LINE|L1 -35279 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 207.5-31 chr5 57335568 57335842 + 1 NA Intergenic Intergenic 121631 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 127.5-13 chr8 67497982 67498159 + 1 NA intron (NM_020361, intron 6 of 10) intron (NM_020361, intron 6 of 10) 154236 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 208.5-26 chr5 151657673 151657987 + 1 NA Intergenic Intergenic -19115 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 181.5 chr1 74912172 74912481 + 1 NA Intergenic Intergenic -178918 NM_001134759 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 361.5 chr1 110226573 110227239 + 1 NA intron (NM_001039574, intron 3 of 3) intron (NM_001039574, intron 3 of 3) 16592 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 235.5-10 chr14 69725971 69726272 + 1 NA Intergenic Intergenic -41021 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 246.5-42 chr9 26141319 26141705 + 1 NA Intergenic Intergenic 74837 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 252.5-28 chr8 78359284 78359566 + 1 NA Intergenic L1MCa|LINE|L1 -156915 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 151.5-14 chr20 51884831 51885096 + 1 NA Intergenic AluSz|SINE|Alu -22050 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 282.5-32 chr8 119905074 119905618 + 1 NA intron (NM_001283012, intron 1 of 6) L2c|LINE|L2 31624 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 212.5-10 chr12 107693425 107693741 + 1 NA intron (NM_007062, intron 5 of 14) intron (NM_007062, intron 5 of 14) 7541 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 460.5-35 chr8 105627766 105628298 + 1 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 308489 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 272.5-20 chr2 44184880 44185302 + 1 NA intron (NM_177969, intron 1 of 4) Charlie4a|DNA|hAT-Charlie 16216 NM_177968 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 196.5-18 chr2 71102080 71102333 + 1 NA Intergenic AluSg|SINE|Alu 28023 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 264.5-10 chr11 47716837 47717198 + 1 NA 3' UTR (NM_015308, exon 17 of 17).2 3' UTR (NM_015308, exon 17 of 17).2 -1648 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 157.5-10 chr2 106231115 106231403 + 1 NA Intergenic L1MB4|LINE|L1 -36920 NM_001253875 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 213.5-4 chr1 183938940 183939188 + 1 NA intron (NM_015101, intron 11 of 11) intron (NM_015101, intron 11 of 11) 98664 NM_015101 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 216.5-30 chr4 101972097 101972459 + 1 NA intron (NM_017935, intron 7 of 16) L1M2|LINE|L1 158436 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 153.5-14 chr8 142162453 142162628 + 1 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat -13799 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 329.5-10 chr2 5707140 5707793 + 1 NA Intergenic Intergenic 15082 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 229.5-33 chr4 103956980 103957356 + 1 NA Intergenic L1MA1|LINE|L1 -237183 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 125.5-2 chr11 65751067 65751305 + 1 NA Intergenic L1MC1|LINE|L1 29790 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 281.5-25 chr5 15214066 15214593 + 1 NA intron (NR_109944, intron 2 of 2) L2|LINE|L2 52231 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 162.5-12 chr20 2517782 2518098 + 1 NA intron (NM_001282495, intron 1 of 6) intron (NM_001282495, intron 1 of 6) 6582 NM_001282495 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 294.5-20 chr2 113064307 113064716 + 1 NA 3' UTR (NM_012275, exon 5 of 5) 3' UTR (NM_012275, exon 5 of 5) -3459 NM_173161 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 399.5-23 chr5 16508897 16509595 + 1 NA promoter-TSS (NM_019000) promoter-TSS (NM_019000) -248 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 168.5-11 chr14 61247002 61247333 + 1 NA Intergenic Intergenic 34171 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 220.5-15 chr17 16559043 16559452 + 1 NA intron (NM_020653, intron 5 of 5) L1MC4|LINE|L1 9957 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 151.5-19 chr5 16694861 16695028 + 1 NA intron (NM_012334, intron 26 of 40) intron (NM_012334, intron 26 of 40) -77886 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 152.5-17 chr18 10130623 10130908 + 1 NA Intergenic Intergenic 216749 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 141.5-19 chr5 148409615 148409800 + 1 NA intron (NM_001271723, intron 8 of 20) intron (NM_001271723, intron 8 of 20) 25749 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 274.5-12 chr2 61447729 61448231 + 1 NA intron (NM_014709, intron 1 of 79) AluSx|SINE|Alu 23107 NM_014709 9736 Hs.644708 NM_014709 ENSG00000115464 USP34 - ubiquitin specific peptidase 34 protein-coding 140.5-24 chr8 136532117 136532352 + 1 NA intron (NR_147196, intron 1 of 5) ERVL-E-int|LTR|ERVL 1436 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 285.5-13 chr3 60766072 60766445 + 1 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -148388 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 524.5-4 chr14 43623460 43624155 + 1 NA Intergenic LTR106_Mam|LTR|LTR 883476 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 199.5-27 chr3 54495928 54496256 + 1 NA intron (NM_018398, intron 4 of 37) L1ME2|LINE|L1 143765 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 336.5-30 chr9 80237923 80238330 + 1 NA Intergenic L1P3b|LINE|L1 263103 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 326.5-24 chr3 194737545 194738075 + 1 NA intron (NR_037891, intron 1 of 3) intron (NR_037891, intron 1 of 3) 29389 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 113.5-2 chr15 85083478 85083682 + 1 NA exon (NM_002605, exon 6 of 22) exon (NM_002605, exon 6 of 22) 101606 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 183.5-11 chr14 70145238 70145584 + 1 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -41697 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 249.5-30 chr5 95974027 95974392 + 1 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 12208 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 211.5-12 chr16 34589333 34589567 + 1 NA Intergenic Intergenic -207970 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 174.5-33 chr8 26833687 26833962 + 1 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 31831 NM_001322502 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 184.5-7 chr14 61572071 61572400 + 1 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -1582 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 238.5-5 chr10 14232983 14233307 + 1 NA intron (NR_134578, intron 2 of 3) MIRb|SINE|MIR 97739 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 279.5-5 chr15 70553878 70554338 + 1 NA Intergenic L2c|LINE|L2 32498 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 117.5-11 chr17 67035825 67036026 + 1 NA Intergenic L2c|LINE|L2 -8629 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 218.5-8 chr12 127934495 127934865 + 1 NA intron (NR_046392, intron 2 of 4) intron (NR_046392, intron 2 of 4) 19270 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 239.5-13 chr20 52935812 52936121 + 1 NA Intergenic Intergenic -36392 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 154.5-25 chr7 137070085 137070239 + 1 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 94179 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 199.5-12 chr17 53895628 53895890 + 1 NA Intergenic Intergenic 72832 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 179.5-9 chr20 22062181 22062376 + 1 NA intron (NR_038394, intron 1 of 3) intron (NR_038394, intron 1 of 3) 8188 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 223.5-6 chr11 28994852 28995297 + 1 NA Intergenic Intergenic -517526 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 182.5-32 chr9 100223472 100223796 + 1 NA intron (NM_001318381, intron 4 of 17) L2a|LINE|L2 124391 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 262.5-4 chr14 28028207 28028584 + 1 NA Intergenic L1MC4|LINE|L1 -355174 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 225.5-33 chr6 167532522 167532830 + 1 NA Intergenic Intergenic -59886 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 114.5-4 chr10 55396719 55396852 + 1 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -202257 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 167.5-26 chr8 125266634 125266926 + 1 NA intron (NM_001349486, intron 5 of 7) Tigger20a|DNA|TcMar-Tigger -163578 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 242.5-18 chr3 52603471 52603852 + 1 NA exon (NM_001366075, exon 20 of 31) exon (NM_001366075, exon 20 of 31) 67056 NM_001124767 440957 Hs.660577 NM_001124767 ENSG00000168273 SMIM4 C3orf78 small integral membrane protein 4 protein-coding 180.5-14 chr3 158337857 158338120 + 1 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) -188720 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 139.5-21 chr7 21939066 21939219 + 1 NA intron (NM_001127371, intron 1 of 8) L1MB4|LINE|L1 6757 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 193.5-5 chr10 15970740 15971087 + 1 NA Intergenic AluY|SINE|Alu -110380 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 414.5-25 chr7 115910323 115911059 + 1 NA Intergenic Intergenic 57622 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 238.5-14 chr14 49865179 49865588 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -2534 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 144.5-17 chr4 147052911 147053142 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -107140 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 157.5-4 chr12 90618196 90618477 + 1 NA Intergenic Intergenic -299687 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 289.5-6 chr1 158470855 158471378 + 1 NA Intergenic Intergenic 5554 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 213.5-9 chr11 68307405 68307684 + 1 NA Intergenic AluJb|SINE|Alu -5047 NM_002335 4041 Hs.6347 NM_002335 ENSG00000162337 LRP5 BMND1|EVR1|EVR4|HBM|LR3|LRP-5|LRP-7|LRP7|OPPG|OPS|OPTA1|PCLD4|VBCH2 LDL receptor related protein 5 protein-coding 284.5-45 chr9 94817830 94818184 + 1 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 8045 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 173.5-23 chr8 56868143 56868464 + 1 NA Intergenic Intergenic 125564 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 378.5-7 chr10 111483216 111483894 + 1 NA Intergenic Intergenic 369264 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 230.5-10 chr10 91052694 91053088 + 1 NA intron (NR_047467, intron 3 of 3) intron (NR_047467, intron 3 of 3) 7083 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 299.5-5 chr10 72001438 72001801 + 1 NA intron (NM_004273, intron 1 of 2) AluSq2|SINE|Alu 37224 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 126.5-17 chr9 127294816 127295000 + 1 NA intron (NR_104591, intron 2 of 26) L2a|LINE|L2 30134 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 181.5-18 chr2 146957497 146957839 + 1 NA Intergenic L1MB8|LINE|L1 370611 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 353.5-17 chr2 215956587 215957155 + 1 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 56680 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 269.5-44 chr5 179531826 179532117 + 1 NA intron (NR_131066, intron 3 of 5) (ATTTT)n|Simple_repeat|Simple_repeat 9514 NM_001142306 285679 Hs.558748 NM_001013718 ENSG00000204661 C5orf60 - chromosome 5 open reading frame 60 protein-coding 171.5-14 chr22 16915383 16915639 + 1 NA Intergenic Intergenic 88037 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 282.5-29 chr8 38476567 38477004 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -7951 NM_023110 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 264.5-30 chr5 91408731 91409243 + 1 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) -25670 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 166.5-16 chr4 37664277 37664537 + 1 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 21969 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 271.5-19 chr19 44780930 44781399 + 1 NA intron (NM_012116, intron 2 of 10) intron (NM_012116, intron 2 of 10) 3274 NM_012116 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 176.5-32 chr8 79703973 79704224 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 62377 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 165.5-23 chr8 61135871 61136108 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -151981 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 336.5-14 chr3 51647031 51647512 + 1 NA intron (NM_001322253, intron 20 of 23) AluJb|SINE|Alu -23904 NM_001278195 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 211.5-24 chr3 26911122 26911534 + 1 NA Intergenic Intergenic 216771 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 159.5-13 chr15 81197334 81197582 + 1 NA intron (NM_001352685, intron 1 of 19) intron (NM_001352685, intron 1 of 19) 579 NM_001172128 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 199.5-20 chr2 128981448 128981724 + 1 NA Intergenic Intergenic 116986 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 128.5-3 chr1 165001525 165001707 + 1 NA Intergenic L2|LINE|L2 -226975 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 164.5-12 chr17 3884262 3884530 + 1 NA exon (NM_172207, exon 3 of 16) exon (NM_172207, exon 3 of 16) 6347 NM_172206 84254 Hs.8417 NM_032294 ENSG00000004660 CAMKK1 CAMKKA calcium/calmodulin dependent protein kinase kinase 1 protein-coding 191.5-19 chr4 150281868 150282198 + 1 NA intron (NM_001367550, intron 55 of 56) intron (NM_001367550, intron 55 of 56) 203588 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 183.5-32 chr9 22304591 22304881 + 1 NA Intergenic Intergenic -142088 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 394.5-13 chr2 86193234 86193931 + 1 NA promoter-TSS (NR_039939) promoter-TSS (NR_039939) -474 NR_039939 100616159 NR_039939 ENSG00000265420 MIR4779 - microRNA 4779 ncRNA 360.5-14 chr3 24549909 24550587 + 1 NA Intergenic L1M5|LINE|L1 -54540 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 254.5-47 chr8 140212474 140212781 + 1 NA intron (NM_001160372, intron 17 of 22) L1M5|LINE|L1 -112092 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 269.5-26 chr22 25540539 25540931 + 1 NA Intergenic Intergenic -23940 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 252.5-15 chr2 114586452 114586766 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 125032 NM_001178036 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 174.5 chr1 22625220 22625495 + 1 NA Intergenic MIR|SINE|MIR 8009 NR_106742 102466615 NR_106742 ENSG00000276835 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 180.5-6 chr13 95000181 95000417 + 1 NA Intergenic Intergenic 40258 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 173.5-11 chr2 11374616 11374808 + 1 NA Intergenic Intergenic -19269 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 221.5-4 chr10 61797913 61798323 + 1 NA Intergenic Intergenic -103581 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 204.5-28 chr5 23598137 23598381 + 1 NA Intergenic L1PA8A|LINE|L1 90604 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 309.5-24 chr7 119238034 119238344 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 669186 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 473.5-8 chr22 27577167 27577981 + 1 NA Intergenic Intergenic 224182 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 197.5-18 chr18 73430111 73430334 + 1 NA Intergenic Intergenic 105281 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 142.5 chr1 116994649 116994914 + 1 NA Intergenic Intergenic -6969 NM_001256109 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 344.5-15 chr2 182797033 182797529 + 1 NA Intergenic L1ME1|LINE|L1 69356 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 402.5-2 chr1 183697190 183697803 + 1 NA 5' UTR (NM_001297669, exon 2 of 19) 5' UTR (NM_001297669, exon 2 of 19) -44180 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 134.5-19 chr6 42983628 42983809 + 1 NA promoter-TSS (NM_180977) promoter-TSS (NM_180977) -852 NM_006245 5528 Hs.533308 NM_006245 ENSG00000112640 PPP2R5D B56D|B56delta|MRD35 protein phosphatase 2 regulatory subunit B'delta protein-coding 504.5-10 chr7 11722102 11722940 + 1 NA intron (NM_015204, intron 1 of 26) LTR8B|LTR|ERV1 109677 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 305.5-26 chr4 67519197 67519576 + 1 NA exon (NM_001812, exon 6 of 19) exon (NM_001812, exon 6 of 19) 26117 NR_155754 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 303.5-19 chr5 81238344 81238938 + 1 NA non-coding (NR_034121, exon 3 of 3) non-coding (NR_034121, exon 3 of 3) 5319 NM_001099735 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 245.5-3 chr1 221398543 221398838 + 1 NA Intergenic L1MA1|LINE|L1 -62394 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 137.5-4 chr1 221502662 221502860 + 1 NA Intergenic L1ME3Cz|LINE|L1 -166465 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 284.5-21 chr18 7022035 7022463 + 1 NA intron (NM_005559, intron 19 of 62) L2a|LINE|L2 67572 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 212.5-25 chr5 98608124 98608486 + 1 NA Intergenic MIRb|SINE|MIR -160327 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 157.5-25 chr9 87180125 87180332 + 1 NA Intergenic Intergenic 31584 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 242.5-4 chr12 77481610 77482077 + 1 NA Intergenic Intergenic -349051 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 215.5-15 chr16 75138258 75138570 + 1 NA Intergenic L1MC3|LINE|L1 -10110 NM_001318473 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 202.5-21 chr4 78690511 78690820 + 1 NA Intergenic L2a|LINE|L2 44671 NR_038305 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 255.5-21 chr5 11082461 11082860 + 1 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -321426 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 128.5-18 chr20 47655042 47655224 + 1 NA 3' UTR (NM_006534, exon 23 of 23) 3' UTR (NM_006534, exon 23 of 23) 130931 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 221.5-2 chr10 26224088 26224388 + 1 NA intron (NM_000818, intron 5 of 16) intron (NM_000818, intron 5 of 16) 7464 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 426.5-2 chr1 110656482 110657036 + 1 NA non-coding (NR_109846, exon 3 of 3) non-coding (NR_109846, exon 3 of 3) 15016 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 176.5-14 chr20 54336286 54336529 + 1 NA Intergenic L1PA16|LINE|L1 128320 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 207.5-20 chr2 98993745 98994123 + 1 NA Intergenic Intergenic -57709 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 296.5-15 chr2 104340746 104341291 + 1 NA Intergenic LTR16E1|LTR|ERVL 67314 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 210.5-18 chr4 78660430 78660771 + 1 NA intron (NR_038306, intron 2 of 2) Tigger7|DNA|TcMar-Tigger 14606 NR_038305 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 212.5-29 chr7 92623705 92624014 + 1 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -33469 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 308.5-7 chr13 84719455 84719976 + 1 NA Intergenic Intergenic -63939 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 152.5-18 chr19 13658411 13658635 + 1 NA Intergenic MER65B|LTR|ERV1 -73229 NM_001320566 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 289.5-22 chr2 81241510 81241941 + 1 NA Intergenic L1MC4|LINE|L1 225221 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 336.5-6 chr10 89590811 89591452 + 1 NA intron (NM_148977, intron 5 of 6) L1MB8|LINE|L1 1696 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 396.5-13 chr18 58032233 58032948 + 1 NA Intergenic Intergenic -11636 NM_001144967 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 451.5-20 chr5 146815643 146816448 + 1 NA intron (NM_001271899, intron 2 of 9) L3|LINE|CR1 62740 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 160.5-12 chr19 36471956 36472177 + 1 NA intron (NM_001145345, intron 4 of 4) L2a|LINE|L2 17369 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 266.5-13 chr2 16536432 16536867 + 1 NA Intergenic Intergenic 129185 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 128.5-25 chr6 66995124 66995324 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -1060127 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 162.5-13 chr20 49743366 49743678 + 1 NA Intergenic AluSz|SINE|Alu -29644 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 152.5-16 chr17 7320343 7320521 + 1 NA intron (NM_032442, intron 21 of 28) AluSz|SINE|Alu -5072 NM_004489 2874 Hs.438219 NM_004489 ENSG00000132522 GPS2 AMF-1 G protein pathway suppressor 2 protein-coding 163.5-16 chr5 132722808 132723016 + 1 NA intron (NM_007054, intron 4 of 16) MER20B|DNA|hAT-Charlie 14634 NM_001300792 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 177.5-31 chrX 66882817 66883141 + 1 NA Intergenic Charlie15b|DNA|hAT-Charlie -243681 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 149.5-9 chr20 42098573 42098856 + 1 NA intron (NM_133170, intron 27 of 31) intron (NM_133170, intron 27 of 31) -480337 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 226.5-26 chr8 125920890 125921254 + 1 NA Intergenic Intergenic 30125 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 306.5-29 chr4 130679065 130679552 + 1 NA Intergenic MIRb|SINE|MIR 302947 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 118.5-12 chr4 163028042 163028182 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger 65516 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 131.5-28 chr9 24163968 24164203 + 1 NA Intergenic L1ME1|LINE|L1 -313484 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 146.5 chr1 117752248 117752491 + 1 NA Intergenic Intergenic 146321 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 292.5-35 chr9 114285087 114285670 + 1 NA intron (NM_032888, intron 41 of 60) intron (NM_032888, intron 41 of 60) -37645 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 174.5-8 chr11 112080032 112080356 + 1 NA intron (NR_103469, intron 3 of 5) Alu|SINE|Alu 5895 NM_001082970 55216 Hs.195060 NM_018195 ENSG00000150776 NKAPD1 C11orf57 NKAP domain containing 1 protein-coding 246.5-15 chr18 50599417 50599663 + 1 NA intron (NM_001292039, intron 1 of 4) AluSz6|SINE|Alu 39453 NM_002747 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 211.5-4 chr10 53663866 53664163 + 1 NA Intergenic Intergenic -822216 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 118.5-11 chr3 171472319 171472437 + 1 NA Intergenic Intergenic -11970 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 253.5-7 chr14 35686466 35686815 + 1 NA exon (NM_001346249, exon 19 of 42) exon (NM_001346249, exon 19 of 42) 76291 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 228.5-2 chr1 82306685 82307018 + 1 NA Intergenic Intergenic 504398 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 451.5-2 chr1 195576397 195577048 + 1 NA Intergenic Intergenic 511993 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235.5-13 chr2 56265212 56265617 + 1 NA intron (NM_001348516, intron 2 of 2) L1MA7|LINE|L1 -79644 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 170.5-18 chr4 42387942 42388114 + 1 NA intron (NR_134668, intron 1 of 1) AluSc|SINE|Alu 3240 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 137.5-23 chr7 13459573 13459805 + 1 NA Intergenic LTR41|LTR|ERVL 526825 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 139.5-11 chr2 204806295 204806543 + 1 NA intron (NM_205863, intron 2 of 21) L1MA3|LINE|L1 260944 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 181.5-8 chr12 34413557 34413816 + 1 NA Intergenic ALR/Alpha|Satellite|centr 391190 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 167.5-8 chr14 53035113 53035335 + 1 NA Intergenic MIR|SINE|MIR -84127 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 243.5-25 chr3 124168367 124168801 + 1 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 35655 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 142.5-19 chr8 112150941 112151137 + 1 NA Intergenic Intergenic -492454 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 428.5-22 chr8 128091114 128091806 + 1 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 42308 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 186.5-15 chr2 98862598 98862820 + 1 NA intron (NM_207362, intron 1 of 9) L1M4c|LINE|L1 73516 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 250.5-37 chr7 29616252 29616567 + 1 NA Intergenic Intergenic 50876 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 146.5-30 chr5 127642388 127642637 + 1 NA Intergenic Intergenic -6509 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 174.5-35 chr9 78677849 78678081 + 1 NA Intergenic MER3|DNA|hAT-Charlie 380840 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 323.5-24 chr4 24170531 24171126 + 1 NA intron (NR_148982, intron 1 of 13) L3|LINE|CR1 -280781 NM_013261 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 154.5-14 chr22 43201404 43201699 + 1 NA 3' UTR (NM_173050, exon 22 of 22) 3' UTR (NM_173050, exon 22 of 22) -11123 NR_134632 105373051 Hs.629290 NR_134632 ENSG00000236272 LOC105373051 - uncharacterized LOC105373051 ncRNA 134.5-6 chr13 94851618 94851788 + 1 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 90762 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 142.5-16 chr5 178704338 178704502 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 26239 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 200.5-18 chr18 47761610 47761810 + 1 NA Intergenic L1PA16|LINE|L1 168949 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 219.5-23 chr3 45871149 45871519 + 1 NA intron (NM_001276379, intron 2 of 9) L1ME3G|LINE|L1 -15170 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 228.5-33 chr9 7084590 7084982 + 1 NA intron (NM_001353997, intron 17 of 22) L2b|LINE|L2 327436 NM_001353997 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 112.5-8 chr2 81377552 81377752 + 1 NA Intergenic Intergenic 89294 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 335.5-5 chr10 103559863 103560463 + 1 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -42721 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 118.5-18 chrX 67444468 67444652 + 1 NA Intergenic LTR88b|LTR|Gypsy? -99461 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 359.5-25 chr22 32046819 32047355 + 1 NA intron (NM_000343, intron 1 of 14) intron (NM_000343, intron 1 of 14) 3826 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 188.5-23 chr5 38191865 38192191 + 1 NA Intergenic Intergenic 43548 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 139.5-7 chr15 40173850 40174067 + 1 NA intron (NM_001211, intron 4 of 22) intron (NM_001211, intron 4 of 22) 12949 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 359.5-19 chr2 21922277 21922681 + 1 NA Intergenic Intergenic -211827 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 203.5-27 chr7 33594838 33595103 + 1 NA intron (NR_145411, intron 22 of 23) L1PA8|LINE|L1 -309945 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 206.5-15 chr14 59364882 59365247 + 1 NA intron (NM_001270520, intron 23 of 24) intron (NM_001270520, intron 23 of 24) 100316 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 250.5-7 chr11 113582358 113582743 + 1 NA Intergenic L3|LINE|CR1 -107152 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 206.5-27 chr4 29669584 29669892 + 1 NA Intergenic Intergenic 455446 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 144.5-7 chr17 48531413 48531620 + 1 NA promoter-TSS (NM_002144) promoter-TSS (NM_002144) -505 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 212.5-17 chr2 20489846 20490210 + 1 NA intron (NR_157978, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 11496 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 136.5-8 chr13 103810143 103810280 + 1 NA Intergenic LTR33B|LTR|ERVL 385011 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 232.5-11 chr11 35469231 35469564 + 1 NA intron (NM_001282676, intron 3 of 8) intron (NM_001282676, intron 3 of 8) -49339 NM_001195728 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 197.5-22 chr2 189219439 189219733 + 1 NA Intergenic Intergenic -39825 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 141.5-12 chr16 62532594 62532820 + 1 NA Intergenic Intergenic -496269 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 378.5-23 chr22 40604608 40605178 + 1 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 31826 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 115.5-15 chr3 155689542 155689684 + 1 NA intron (NM_001349252, intron 2 of 24) L1M1|LINE|L1 -13270 NM_001130960 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 147.5-11 chr3 177336209 177336446 + 1 NA Intergenic Intergenic 41885 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 242.5-35 chr6 36503028 36503354 + 1 NA intron (NM_007271, intron 9 of 13) L1ME3F|LINE|L1 44288 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 170.5-28 chr9 76668870 76669139 + 1 NA intron (NM_001308048, intron 9 of 17) MLT1B|LTR|ERVL-MaLR 23411 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 221.5-31 chr9 94630994 94631346 + 1 NA intron (NM_000507, intron 1 of 6) intron (NM_000507, intron 1 of 6) 8348 NM_000507 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 159.5-3 chr1 238570690 238570935 + 1 NA Intergenic Intergenic -84795 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 269.5-8 chr11 84377575 84378071 + 1 NA intron (NM_001142699, intron 7 of 27) L1MEd|LINE|L1 -60484 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 158.5-9 chr16 7675739 7675986 + 1 NA intron (NM_145893, intron 10 of 13) intron (NM_145893, intron 10 of 13) 343017 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 234.5-11 chr16 8508988 8509225 + 1 NA Intergenic L1PA16|LINE|L1 80732 NM_001290095 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 165.5-9 chr2 34586652 34586935 + 1 NA Intergenic L2a|LINE|L2 -90764 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 232.5-23 chr3 85440568 85441015 + 1 NA intron (NM_001167674, intron 1 of 9) AluSx1|SINE|Alu 55081 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 196.5-30 chr5 93875878 93876106 + 1 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -134392 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 213.5-8 chr11 4597020 4597265 + 1 NA Intergenic Intergenic 3103 NM_001005169 390037 Hs.553727 NM_001005169 ENSG00000232268 OR52I1 OR11-13 olfactory receptor family 52 subfamily I member 1 protein-coding 313.5-36 chr6 129903343 129903878 + 1 NA Intergenic L1MEg|LINE|L1 -42295 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 150.5-6 chr13 113723103 113723324 + 1 NA intron (NM_002929, intron 4 of 6) intron (NM_002929, intron 4 of 6) 27876 NR_028064 100130386 Hs.704121 NM_001137672 ENSG00000279770 LINC00552 - long intergenic non-protein coding RNA 552 ncRNA 131.5-10 chr12 125548714 125548916 + 1 NA intron (NM_052907, intron 4 of 8) L2|LINE|L2 -73637 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 253.5-9 chr15 35370812 35371258 + 1 NA 3' UTR (NM_080650, exon 9 of 9) 3' UTR (NM_080650, exon 9 of 9) 1329 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 139.5-13 chr21 16803034 16803289 + 1 NA Intergenic Intergenic 212924 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 358.5-7 chr15 68180833 68181367 + 1 NA intron (NM_016166, intron 11 of 13) intron (NM_016166, intron 11 of 13) 25010 NM_001286695 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 156.5-2 chr1 33408848 33409069 + 1 NA Intergenic Intergenic -33365 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 121.5-2 chr12 29762952 29763167 + 1 NA intron (NM_001367875, intron 2 of 19) MamRTE1|LINE|RTE-BovB 20883 NM_001193451 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 302.5-26 chr21 46117782 46118171 + 1 NA intron (NM_058174, intron 12 of 27) intron (NM_058174, intron 12 of 27) 19857 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 400.5-2 chr1 59118304 59118956 + 1 NA Intergenic L1ME2|LINE|L1 28177 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 318.5-25 chr5 32379797 32380173 + 1 NA intron (NR_144318, intron 15 of 18) intron (NR_144318, intron 15 of 18) 14490 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 235.5-21 chr4 45351306 45351709 + 1 NA Intergenic Intergenic -624873 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 232.5-2 chr1 55942654 55942982 + 1 NA intron (NR_147162, intron 1 of 2) intron (NR_147162, intron 1 of 2) 2145 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 348.5 chr1 173215728 173216277 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -8671 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 223.5-38 chr7 128089558 128089891 + 1 NA intron (NM_014390, intron 22 of 23) intron (NM_014390, intron 22 of 23) 7863 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 195.5-22 chr4 38099471 38099706 + 1 NA intron (NM_001253912, intron 16 of 20) intron (NM_001253912, intron 16 of 20) -10593 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 151.5-5 chr12 57217098 57217367 + 1 NA intron (NM_007224, intron 1 of 1) CpG 438 NM_007224 11247 Hs.745023 NM_007224 ENSG00000182379 NXPH4 NPH4 neurexophilin 4 protein-coding 294.5-28 chr4 162102606 162103068 + 1 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 61163 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 143.5-21 chr5 34663220 34663402 + 1 NA intron (NM_001145520, intron 1 of 17) AluJb|SINE|Alu 6820 NM_001145520 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 203.5-16 chr2 155955240 155955509 + 1 NA Intergenic Intergenic 299557 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 264.5-18 chr18 71070232 71070643 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -419483 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 144.5-12 chr21 15479318 15479579 + 1 NA Intergenic Intergenic -250486 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 285.5-20 chr4 171775076 171775542 + 1 NA Intergenic Intergenic -38095 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 220.5-3 chr1 72854242 72854664 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -451717 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 151.5-11 chr2 74895940 74896168 + 1 NA Intergenic LTR48B|LTR|ERV1 -13077 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 166.5-19 chr6 9374080 9374400 + 1 NA Intergenic L1MEd|LINE|L1 722031 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 135.5-15 chr8 24643651 24643847 + 1 NA Intergenic Intergenic -95131 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 343.5-5 chr10 101516758 101517348 + 1 NA intron (NM_001256856, intron 3 of 13) intron (NM_001256856, intron 3 of 13) 71204 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 142.5-21 chr8 120709286 120709486 + 1 NA intron (NM_021021, intron 1 of 6) L2|LINE|L2 -51867 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 133.5-12 chr18 42978304 42978437 + 1 NA intron (NM_001272077, intron 2 of 5) intron (NM_001272077, intron 2 of 5) 137315 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 256.5-31 chr7 110769492 110769934 + 1 NA intron (NM_001350963, intron 5 of 5) A-rich|Low_complexity|Low_complexity -321293 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 358.5-17 chr21 24574663 24575239 + 1 NA Intergenic Intergenic 146211 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 218.5-28 chr7 9108041 9108372 + 1 NA Intergenic L1M1|LINE|L1 -526064 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 187.5-6 chr11 23100453 23100686 + 1 NA Intergenic Intergenic -240095 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 285.5-2 chr1 240082712 240083005 + 1 NA Intergenic AluSx3|SINE|Alu -9025 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 214.5-18 chr3 26122851 26123066 + 1 NA Intergenic L1PA16|LINE|L1 -249263 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 245.5-27 chr5 122193822 122194242 + 1 NA Intergenic MER45A|DNA|hAT-Tip100 33856 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 197.5-16 chr16 14273973 14274309 + 1 NA Intergenic L1ME1|LINE|L1 -28147 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 151.5-21 chr5 135696336 135696634 + 1 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -42550 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 248.5-26 chr7 4055826 4056311 + 1 NA intron (NM_152744, intron 19 of 44) L1MD|LINE|L1 -73617 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 118.5-15 chr7 96957445 96957596 + 1 NA Intergenic L2a|LINE|L2 -48033 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 132.5-6 chr11 7615739 7615938 + 1 NA intron (NM_001351856, intron 6 of 23) L3|LINE|CR1 10104 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 176.5-33 chr8 112604468 112604815 + 1 NA intron (NM_001363185, intron 20 of 66) L1PA15|LINE|L1 -38852 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 314.5-14 chr18 7748315 7748809 + 1 NA intron (NM_002845, intron 1 of 30) MLT1J|LTR|ERVL-MaLR 181246 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 241.5-43 chrX 73670675 73670985 + 1 NA intron (NM_001300884, intron 3 of 4) L1M2|LINE|L1 107682 NM_001300884 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 292.5-5 chr10 12120653 12121120 + 1 NA exon (NM_018706, exon 17 of 17) exon (NM_018706, exon 17 of 17) -8755 NM_001142627 55176 Hs.112955 NM_018144 ENSG00000065665 SEC61A2 - SEC61 translocon alpha 2 subunit protein-coding 209.5-14 chr15 70600285 70600605 + 1 NA Intergenic L1MC1|LINE|L1 -13839 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 228.5-21 chr3 30005509 30005826 + 1 NA 3' UTR (NM_001177711, exon 14 of 14) 3' UTR (NM_001177711, exon 14 of 14) -71511 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 457.5-6 chr11 32329764 32330428 + 1 NA Intergenic Charlie15b|DNA|hAT-Charlie 70304 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 126.5-12 chr5 38011411 38011626 + 1 NA Intergenic Intergenic -14179 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 174.5-17 chr2 160434319 160434493 + 1 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) -26524 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 216.5-16 chr15 94025354 94025691 + 1 NA intron (NR_120320, intron 2 of 8) MIRb|SINE|MIR 82416 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 206.5-9 chr12 46502641 46503021 + 1 NA intron (NR_125380, intron 3 of 3) L1M3d|LINE|L1 118724 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 328.5-20 chr2 45747821 45748285 + 1 NA intron (NM_005400, intron 1 of 14) L1MB2|LINE|L1 96378 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 307.5-29 chr5 10260484 10260891 + 1 NA intron (NM_012073, intron 6 of 10) intron (NM_012073, intron 6 of 10) 10150 NM_001306155 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 171.5-21 chr4 69466095 69466409 + 1 NA Intergenic MER57-int|LTR|ERV1 29653 NM_021139 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 289.5-29 chr3 60095414 60095795 + 1 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -14695 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 197.5-4 chr1 161003567 161003764 + 1 NA intron (NM_001348091, intron 1 of 8) AluSx1|SINE|Alu 17487 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 221.5 chr1 115818909 115819130 + 1 NA Intergenic L1M5|LINE|L1 21684 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 295.5-13 chr2 43018040 43018568 + 1 NA Intergenic L2|LINE|L2 21239 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 207.5-43 chr9 124872086 124872360 + 1 NA intron (NM_030978, intron 3 of 5) intron (NM_030978, intron 3 of 5) 10093 NM_030978 81873 Hs.132499 NM_030978 ENSG00000136950 ARPC5L ARC16-2 actin related protein 2/3 complex subunit 5 like protein-coding 127.5-4 chr2 112973787 112973999 + 1 NA Intergenic Intergenic -4113 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 302.5-15 chr16 6660984 6661585 + 1 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -112525 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 292.5-17 chr2 129663840 129664320 + 1 NA Intergenic L1ME2|LINE|L1 213411 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 175.5-17 chr2 202784909 202785195 + 1 NA intron (NM_001288623, intron 12 of 12) AluSc8|SINE|Alu 44182 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 196.5-9 chr16 2192766 2192962 + 1 NA intron (NM_020764, intron 1 of 19) L2b|LINE|L2 3741 NM_020764 57524 Hs.643537 NM_020764 ENSG00000167971 CASKIN1 ANKS5A CASK interacting protein 1 protein-coding 163.5-14 chr4 101270499 101270815 + 1 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) -29785 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 168.5-8 chr11 91262474 91262724 + 1 NA Intergenic HAL1|LINE|L1 -393397 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 117.5-12 chr18 75751549 75751666 + 1 NA Intergenic L2|LINE|L2 -39204 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 116.5-18 chr6 140270974 140271154 + 1 NA Intergenic Intergenic 65812 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 118.5-3 chr14 63810583 63810767 + 1 NA Intergenic MER31-int|LTR|ERV1 -42290 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 212.5-3 chr1 218926748 218927020 + 1 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -8373 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 412.5-26 chr5 64037396 64038125 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -75468 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 185.5-12 chr18 13602311 13602534 + 1 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -8692 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 281.5-22 chr3 197308590 197308991 + 1 NA Intergenic Intergenic -9469 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 268.5-5 chr11 133993430 133993921 + 1 NA Intergenic MER3|DNA|hAT-Charlie -36879 NM_001277285 22997 Hs.204121 NM_014987 ENSG00000080854 IGSF9B - immunoglobulin superfamily member 9B protein-coding 248.5-20 chr3 122082461 122082709 + 1 NA intron (NM_006889, intron 1 of 6) L3|LINE|CR1 4736 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 203.5-31 chr7 127196499 127196815 + 1 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -18470 NR_110195 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 262.5-5 chr14 71592732 71593035 + 1 NA intron (NM_001354286, intron 6 of 24) intron (NM_001354286, intron 6 of 24) 6585 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 292.5-9 chr14 74219358 74219841 + 1 NA Intergenic Intergenic -19850 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 270.5-11 chr18 78095217 78095644 + 1 NA Intergenic Intergenic -101703 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 236.5-34 chr6 167659128 167659539 + 1 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 19890 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 126.5-10 chr4 97219606 97219840 + 1 NA Intergenic AluJb|SINE|Alu -147203 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 128.5-8 chr12 52798332 52798460 + 1 NA Intergenic AluJb|SINE|Alu -2279 NM_057088 3850 Hs.680652 NM_057088 ENSG00000186442 KRT3 CK3|K3 keratin 3 protein-coding 321.5-19 chr19 10212692 10213142 + 1 NA Intergenic L1MC4|LINE|L1 -17496 NR_036206 100422925 NR_036206 ENSG00000264266 MIR4322 - microRNA 4322 ncRNA 389.5-3 chr1 65337049 65337468 + 1 NA intron (NM_001256864, intron 1 of 18) L1MC5|LINE|L1 27715 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 130.5-16 chr21 29364916 29365046 + 1 NA Intergenic Intergenic -7520 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 366.5-17 chr19 35364659 35365348 + 1 NA Intergenic L1PA8|LINE|L1 -6092 NM_001348195 2866 NM_005305 ENSG00000126251 GPR42 FFAR1L|FFAR3L|GPR41L|GPR42P G protein-coupled receptor 42 (gene/pseudogene) protein-coding 140.5-7 chr12 41103029 41103267 + 1 NA Intergenic Intergenic -85172 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 251.5-7 chr11 112289205 112289579 + 1 NA intron (NR_126004, intron 1 of 3) MER119|DNA|hAT-Charlie 18643 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 220.5-8 chr12 101864325 101864745 + 1 NA Intergenic AluJo|SINE|Alu -13045 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 134.5-21 chr6 64697349 64697596 + 1 NA intron (NM_001292009, intron 22 of 43) L1M2|LINE|L1 -603946 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 317.5-17 chr2 133471088 133471585 + 1 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 97127 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 207.5-6 chr10 56266834 56267234 + 1 NA Intergenic L1M5|LINE|L1 94225 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 346.5-3 chr1 203793497 203794137 + 1 NA Intergenic AluSg|SINE|Alu -1720 NM_001319239 9877 Hs.532399 NM_014827 ENSG00000058673 ZC3H11A ZC3HDC11A zinc finger CCCH-type containing 11A protein-coding 238.5-33 chr6 27125069 27125307 + 1 NA Intergenic Intergenic 7608 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 130.5-12 chr18 74575456 74575711 + 1 NA intron (NM_032649, intron 7 of 11) intron (NM_032649, intron 7 of 11) 22252 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 240.5 chr1 187228339 187228669 + 1 NA intron (NR_126347, intron 1 of 3) MER89|LTR|ERV1 135662 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 228.5-22 chr3 62381238 62381537 + 1 NA Intergenic Intergenic -7837 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 230.5-8 chr10 69607369 69607730 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -22698 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 129.5-10 chr2 65984183 65984393 + 1 NA Intergenic Intergenic 374040 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 193.5-3 chr1 183811537 183811813 + 1 NA intron (NM_001297671, intron 2 of 17) intron (NM_001297671, intron 2 of 17) 6555 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 248.5-17 chr20 59473045 59473424 + 1 NA Intergenic LTR7|LTR|ERV1 -104275 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 194.5-27 chr5 150971177 150971549 + 1 NA Intergenic L1M4b|LINE|L1 -24779 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 166.5-3 chr14 74315085 74315399 + 1 NA Intergenic AluSz6|SINE|Alu -12308 NR_148467 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 183.5-31 chr9 2846447 2846676 + 1 NA Intergenic AluSz6|SINE|Alu -2466 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 162.5-17 chr5 27006430 27006649 + 1 NA intron (NM_016279, intron 1 of 11) LTR33|LTR|ERVL 32047 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 187.5-9 chr14 68657002 68657256 + 1 NA intron (NM_001321818, intron 10 of 10) MER3|DNA|hAT-Charlie -28342 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 292.5-14 chr17 56485769 56486230 + 1 NA intron (NM_001370326, intron 18 of 20) intron (NM_001370326, intron 18 of 20) -107700 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 189.5-6 chr12 15405545 15405869 + 1 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 83199 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 430.5-5 chr1 181558426 181558948 + 1 NA intron (NM_001205293, intron 3 of 47) L2b|LINE|L2 75170 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 195.5 chr1 13462181 13462407 + 1 NA Intergenic Intergenic 51709 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 225.5-30 chr3 190785743 190786093 + 1 NA Intergenic Intergenic 76776 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 280.5-4 chr10 51525933 51526468 + 1 NA intron (NM_001098512, intron 3 of 17) MER33|DNA|hAT-Charlie 173395 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 316.5-11 chr19 19601907 19602341 + 1 NA intron (NR_038198, intron 1 of 7) L2b|LINE|L2 16563 NM_025245 80714 Hs.466257 NM_025245 ENSG00000105717 PBX4 - PBX homeobox 4 protein-coding 114.5-5 chr11 59704286 59704400 + 1 NA Intergenic L1MC3|LINE|L1 9502 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 250.5-17 chr19 8055661 8055970 + 1 NA intron (NM_005624, intron 2 of 5) intron (NM_005624, intron 2 of 5) 3053 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 144.5-20 chr6 63757668 63757896 + 1 NA intron (NM_001292009, intron 41 of 43) intron (NM_001292009, intron 41 of 43) -49054 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 167.5-5 chr12 94009718 94009979 + 1 NA Intergenic Intergenic -66242 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 210.5-4 chr11 132563322 132563671 + 1 NA intron (NM_002545, intron 2 of 6) L1MB5|LINE|L1 279194 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 174.5-21 chr3 85126369 85126702 + 1 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -64271 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 121.5-20 chrX 77062878 77063071 + 1 NA Intergenic Intergenic -48442 NR_110406 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 274.5-2 chr1 150360510 150360955 + 1 NA Intergenic AluSp|SINE|Alu -3379 NM_001297673 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 307.5-43 chrX 54308527 54308942 + 1 NA intron (NM_001002838, intron 4 of 22) intron (NM_001002838, intron 4 of 22) 49271 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 185.5-4 chr11 12214320 12214608 + 1 NA intron (NR_144420, intron 7 of 27) intron (NR_144420, intron 7 of 27) 50781 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 141.5-10 chr14 73252366 73252583 + 1 NA intron (NM_001365907, intron 9 of 25) MIR|SINE|MIR -6473 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 276.5-11 chr14 51267930 51268446 + 1 NA Intergenic MER110A|LTR|ERV1 27941 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 136.5-19 chr8 31765111 31765247 + 1 NA intron (NM_013962, intron 1 of 4) L1MD1|LINE|L1 125427 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 186.5-13 chr17 79622229 79622551 + 1 NA Intergenic Intergenic -11339 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 498.5-20 chrX 119021244 119022239 + 1 NA Intergenic Intergenic 45409 NM_001289109 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 305.5-40 chr8 51047623 51048139 + 1 NA Intergenic Intergenic 761564 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 212.5-2 chr1 94461048 94461366 + 1 NA intron (NM_002858, intron 2 of 22) intron (NM_002858, intron 2 of 22) 42818 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 209.5-29 chr9 106207518 106207883 + 1 NA Intergenic L1MB8|LINE|L1 -393228 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 370.5-15 chr2 37520936 37521506 + 1 NA Intergenic L1ME1|LINE|L1 150978 NM_006449 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 143.5-6 chr10 105905506 105905733 + 1 NA Intergenic Intergenic -85286 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 354.5-13 chr18 5360023 5360501 + 1 NA Intergenic L1PA8|LINE|L1 -63209 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 241.5-39 chr8 141083946 141084187 + 1 NA Intergenic Intergenic -44523 NM_001362798 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 239.5 chr10 124967156 124967436 + 1 NA intron (NM_017580, intron 2 of 8) L2c|LINE|L2 25173 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 275.5-38 chrX 151991321 151991737 + 1 NA Intergenic Intergenic -16853 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 242.5-31 chr5 42099364 42099694 + 1 NA Intergenic L1PREC2|LINE|L1 75816 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 259.5-14 chr17 58653099 58653530 + 1 NA intron (NM_031272, intron 1 of 31) MIR|SINE|MIR 38741 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 124.5-10 chr5 30647317 30647494 + 1 NA Intergenic Intergenic -546281 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 257.5-15 chr14 87550914 87551284 + 1 NA Intergenic L1MA7|LINE|L1 104195 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 254.5-46 chr8 132035132 132035534 + 1 NA intron (NM_001080399, intron 9 of 13) MIR|SINE|MIR 24049 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 195.5-2 chr1 197198161 197198461 + 1 NA intron (NM_194314, intron 1 of 9) intron (NM_194314, intron 1 of 9) 2231 NM_194314 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 353.5-6 chr11 70236816 70237169 + 1 NA Intergenic AluJr|SINE|Alu -33698 NR_045286 8500 Hs.530749 NM_003626 ENSG00000131626 PPFIA1 LIP.1|LIP1|LIPRIN PTPRF interacting protein alpha 1 protein-coding 169.5-18 chr6 85937053 85937222 + 1 NA Intergenic Intergenic -258404 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 307.5-4 chr1 221158829 221159392 + 1 NA Intergenic Intergenic 177186 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 143.5-14 chr3 56782610 56782821 + 1 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -6998 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 234.5-3 chr1 212521647 212521960 + 1 NA Intergenic AluSc5|SINE|Alu -23891 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 230.5-26 chr2 28426237 28426555 + 1 NA Intergenic L2b|LINE|L2 -31724 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 128.5-17 chr2 85685905 85686065 + 1 NA Intergenic Intergenic -8373 NM_001302758 10578 Hs.105806 NM_006433 ENSG00000115523 GNLY D2S69E|LAG-2|LAG2|NKG5|TLA519 granulysin protein-coding 145.5-19 chr20 45921764 45921955 + 1 NA Intergenic L2b|LINE|L2 -9495 NM_001242920 5360 Hs.439312 NM_006227 ENSG00000100979 PLTP BPIFE|HDLCQ9 phospholipid transfer protein protein-coding 449.5-2 chr1 180502333 180502904 + 1 NA promoter-TSS (NM_032360) promoter-TSS (NM_032360) -41 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 263.5-16 chr21 29371406 29371814 + 1 NA promoter-TSS (NR_046564) promoter-TSS (NR_046564) -891 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 171.5-34 chr9 136434219 136434418 + 1 NA intron (NM_001318502, intron 2 of 9) CpG 5527 NM_001318502 56623 Hs.120998 NM_019892 ENSG00000148384 INPP5E CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin inositol polyphosphate-5-phosphatase E protein-coding 163.5 chr1 85674760 85675027 + 1 NA intron (NM_017953, intron 8 of 9) intron (NM_017953, intron 8 of 9) 33540 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 213.5-6 chr10 63338562 63338856 + 1 NA intron (NM_001322258, intron 2 of 24) AluSp|SINE|Alu 34339 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 181.5-5 chr11 82463413 82463655 + 1 NA Intergenic Intergenic -59621 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 339.5-2 chr1 39691882 39692446 + 1 NA promoter-TSS (NM_001282396) promoter-TSS (NM_001282396) -679 NM_001282397 51440 Hs.743975 NM_016257 ENSG00000116983 HPCAL4 HLP4 hippocalcin like 4 protein-coding 194.5-18 chr3 28139620 28139931 + 1 NA Intergenic Intergenic -101844 NM_182523 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 213.5-15 chr14 83336568 83336979 + 1 NA Intergenic L1M4c|LINE|L1 694141 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 270.5-12 chr19 12624350 12624882 + 1 NA intron (NM_153358, intron 2 of 3) intron (NM_153358, intron 2 of 3) 13696 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 360.5-23 chr5 150391604 150392287 + 1 NA intron (NM_000356, intron 19 of 25) intron (NM_000356, intron 19 of 25) 20811 NR_157074 972 Hs.436568 NM_004355 ENSG00000019582 CD74 DHLAG|HLADG|II|Ia-GAMMA|p33 CD74 molecule protein-coding 270.5-28 chr6 161164341 161164747 + 1 NA intron (NM_020133, intron 3 of 8) intron (NM_020133, intron 3 of 8) -2562 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 214.5-33 chr8 102036351 102036650 + 1 NA intron (NM_001040624, intron 1 of 7) AluSx|SINE|Alu 52068 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 218.5-9 chr14 84872139 84872431 + 1 NA Intergenic Intergenic -399647 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 221.5-10 chr15 78529158 78529544 + 1 NA intron (NM_001083612, intron 4 of 4) L1ME3B|LINE|L1 -11054 NM_001102668 5685 Hs.251531 NM_002789 ENSG00000041357 PSMA4 HC9|HsT17706|PSC9 proteasome subunit alpha 4 protein-coding 173.5-12 chr2 231345875 231346128 + 1 NA TTS (NM_001352756) TTS (NM_001352756) -16707 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 206.5-25 chr20 48151648 48151990 + 1 NA Intergenic Intergenic -161702 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 230.5-16 chr11 82771743 82772158 + 1 NA Intergenic AluJb|SINE|Alu -38086 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 263.5-30 chr9 111036311 111036718 + 1 NA intron (NM_001351401, intron 1 of 6) intron (NM_001351401, intron 1 of 6) 266 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 386.5-13 chr2 189135895 189136411 + 1 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -3042 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 258.5-29 chr8 38955287 38955725 + 1 NA intron (NM_021623, intron 9 of 11) intron (NM_021623, intron 9 of 11) -18722 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 194.5-14 chr2 31713742 31714051 + 1 NA Intergenic L1M1|LINE|L1 90084 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 158.5-8 chr15 79205851 79206165 + 1 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -3780 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 316.5-15 chr2 81870635 81870951 + 1 NA Intergenic L1M5|LINE|L1 -403847 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 155.5-10 chr20 37425477 37425769 + 1 NA Intergenic MIR|SINE|MIR 79495 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 144.5-5 chr14 66069782 66069938 + 1 NA Intergenic LTR33|LTR|ERVL -416511 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 230.5-38 chr4 169925284 169925655 + 1 NA intron (NR_037878, intron 3 of 4) intron (NR_037878, intron 3 of 4) 50433 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 261.5-7 chr11 57033983 57034345 + 1 NA Intergenic Intergenic -3370 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 237.5-16 chr4 64784320 64784783 + 1 NA Intergenic Intergenic 219949 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 214.5-22 chr4 175348027 175348406 + 1 NA Intergenic Intergenic 429858 NM_001130703 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 232.5 chr1 27526306 27526600 + 1 NA Intergenic AluSc8|SINE|Alu -36286 NM_006990 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 248.5-18 chr22 49272485 49272956 + 1 NA Intergenic Intergenic 270746 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 146.5-29 chr5 118563321 118563467 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -1277 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 275.5-3 chr1 97928537 97928813 + 1 NA Intergenic Intergenic -7616 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 193.5-32 chrX 63714897 63715240 + 1 NA intron (NM_001173479, intron 1 of 8) intron (NM_001173479, intron 1 of 8) 40055 NM_001173480 23229 Hs.54697 NM_015185 ENSG00000131089 ARHGEF9 COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2 Cdc42 guanine nucleotide exchange factor 9 protein-coding 237.5-8 chr18 2110474 2110843 + 1 NA Intergenic Intergenic 460847 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 216.5-3 chr1 156476612 156477013 + 1 NA intron (NM_005920, intron 7 of 11) intron (NM_005920, intron 7 of 11) 13875 NM_001271629 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 160.5-24 chr9 35034458 35034661 + 1 NA Intergenic Intergenic -6536 NM_001040412 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 194.5-21 chr4 102876798 102877065 + 1 NA intron (NM_001008388, intron 1 of 2) THE1D|LTR|ERVL-MaLR 7939 NM_001008388 493856 Hs.444955 NM_001008388 ENSG00000145354 CISD2 ERIS|Miner1|NAF-1|WFS2|ZCD2 CDGSH iron sulfur domain 2 protein-coding 231.5-37 chr8 140249969 140250400 + 1 NA intron (NM_001160372, intron 16 of 22) MIRb|SINE|MIR -149649 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 225.5-13 chr14 42890595 42890949 + 1 NA Intergenic (ATGTAT)n|Simple_repeat|Simple_repeat 1283916 NR_144388 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 169.5-15 chr5 22019962 22020217 + 1 NA intron (NM_004061, intron 5 of 14) intron (NM_004061, intron 5 of 14) -122263 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 238.5-12 chr12 105665692 105666020 + 1 NA Intergenic Intergenic -38347 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 265.5-19 chr2 148529985 148530418 + 1 NA Intergenic L2|LINE|L2 -114550 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 136.5-16 chr5 177066809 177067075 + 1 NA non-coding (NR_131774, exon 5 of 5) non-coding (NR_131774, exon 5 of 5) -19973 NM_001354984 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 270.5-23 chr5 149468290 149468786 + 1 NA Intergenic L1ME3|LINE|L1 37892 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 213.5-19 chr2 53751260 53751473 + 1 NA intron (NM_145863, intron 1 of 8) intron (NM_145863, intron 1 of 8) -16417 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 257.5 chr1 907560 908020 + 1 NA Intergenic Intergenic 11902 NR_026874 100130417 Hs.200644 NM_175912 ENSG00000223764 LINC02593 - long intergenic non-protein coding RNA 2593 ncRNA 204.5-31 chr8 123117155 123117420 + 1 NA intron (NM_001363156, intron 9 of 19) AluSx|SINE|Alu 44038 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 354.5-17 chr2 135281688 135282302 + 1 NA intron (NM_001286569, intron 8 of 21) L1MB8|LINE|L1 145367 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 276.5-6 chr10 98086929 98087351 + 1 NA Intergenic Intergenic -47484 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 190.5-11 chr2 100626979 100627280 + 1 NA Intergenic Intergenic 23390 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 412.5 chr1 116159098 116159636 + 1 NA Intergenic Intergenic 47612 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 217.5-33 chr8 117285968 117286362 + 1 NA Intergenic Intergenic 151170 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 293.5-32 chr7 120753301 120753866 + 1 NA Intergenic Intergenic 104561 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 262.5 chr1 229715596 229715979 + 1 NA Intergenic Intergenic 89540 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 195.5-18 chr2 185064685 185064938 + 1 NA Intergenic Intergenic 102261 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 150.5-4 chr11 80917702 80917987 + 1 NA Intergenic L2c|LINE|L2 -155041 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 121.5-17 chr5 31228140 31228288 + 1 NA intron (NM_001362435, intron 1 of 10) MLT1D|LTR|ERVL-MaLR 34528 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 157.5-26 chr9 102258753 102259021 + 1 NA Intergenic L1PB1|LINE|L1 -260750 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 183.5-16 chr19 21506992 21507259 + 1 NA intron (NM_001346912, intron 1 of 3) MER57E3|LTR|ERV1 1523 NM_001001415 353088 Hs.572567 NM_001001415 ENSG00000197013 ZNF429 - zinc finger protein 429 protein-coding 330.5-17 chr18 61817107 61817619 + 1 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 69187 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 219.5-4 chr10 67356618 67356920 + 1 NA intron (NM_001127384, intron 5 of 17) L2|LINE|L2 46641 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 337.5-29 chr8 117205637 117206240 + 1 NA Intergenic L2a|LINE|L2 70943 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 233.5-27 chr6 160334147 160334504 + 1 NA Intergenic Intergenic -14053 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 188.5-10 chr19 33764306 33764553 + 1 NA intron (NM_001127895, intron 3 of 4) AluJr|SINE|Alu -32441 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 304.5-25 chr2 48432272 48432724 + 1 NA Intergenic L1MC3|LINE|L1 -8268 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 168.5-16 chr20 4700765 4700986 + 1 NA 3' UTR (NM_001080121, exon 2 of 2) 3' UTR (NM_001080121, exon 2 of 2) 14419 NM_001080122 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 148.5-11 chr16 51932939 51933151 + 1 NA Intergenic Intergenic 140890 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 276.5-8 chr10 117242143 117242610 + 1 NA intron (NM_003054, intron 2 of 15) intron (NM_003054, intron 2 of 15) 1262 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 219.5-5 chr10 78133471 78133852 + 1 NA Intergenic L1ME3F|LINE|L1 99798 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 260.5-24 chr4 45195556 45195922 + 1 NA Intergenic Intergenic -469105 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 153.5-8 chr21 33156659 33156876 + 1 NA Intergenic Intergenic 13469 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 170.5-29 chr9 79654508 79654802 + 1 NA intron (NM_001351563, intron 7 of 17) intron (NM_001351563, intron 7 of 17) 81478 NM_001351556 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 142.5-11 chr3 29220212 29220433 + 1 NA Intergenic Intergenic 60617 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 165.5-26 chrX 55387303 55387559 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -64064 NR_130469 100847061 NR_130469 ENSG00000266328 MIR4536-2 - microRNA 4536-2 ncRNA 293.5-23 chr22 45374186 45374641 + 1 NA intron (NM_148674, intron 12 of 24) MER4-int|LTR|ERV1 39186 NM_001291501 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 196.5-2 chr11 40499904 40500244 + 1 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -206944 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 239.5-5 chr12 84065490 84065909 + 1 NA Intergenic MIRb|SINE|MIR 847100 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 130.5-15 chr2 133833891 133834080 + 1 NA Intergenic Intergenic -265522 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 174.5-6 chr10 117223248 117223504 + 1 NA Intergenic Intergenic -17738 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 249.5-15 chr2 107227965 107228391 + 1 NA intron (NR_049853, intron 2 of 3) LTR56|LTR|ERV1 121347 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 215.5-43 chr8 55568660 55569049 + 1 NA Intergenic Intergenic -47876 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 338.5-4 chr1 220665295 220665937 + 1 NA Intergenic Intergenic -24747 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 177.5-6 chr10 16640040 16640287 + 1 NA intron (NM_152724, intron 7 of 7) A-rich|Low_complexity|Low_complexity -118284 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 190.5-6 chr12 115865759 115866073 + 1 NA Intergenic Intergenic 282738 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 253.5-36 chr9 73375481 73375852 + 1 NA Intergenic L1ME1|LINE|L1 223801 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 181.5-13 chr15 26471071 26471368 + 1 NA Intergenic LTR48B|LTR|ERV1 157871 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 207.5-16 chr15 93910577 93910950 + 1 NA intron (NR_120320, intron 8 of 8) ERVL-E-int|LTR|ERVL 10062 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 200.5-15 chr16 75537091 75537477 + 1 NA TTS (NM_001077416) TTS (NM_001077416) -2114 NM_024533 23563 Hs.745424 NM_012126 ENSG00000135702 CHST5 I-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST carbohydrate sulfotransferase 5 protein-coding 223.5-23 chr20 11357972 11358280 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -84743 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 220.5-32 chr7 78328839 78329249 + 1 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -18198 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 263.5-14 chr20 41964440 41964841 + 1 NA Intergenic Intergenic -346263 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 170.5-16 chr3 112384962 112385171 + 1 NA Intergenic L2|LINE|L2 51910 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 217.5-27 chr3 111971153 111971541 + 1 NA intron (NM_001134437, intron 16 of 17) intron (NM_001134437, intron 16 of 17) -7679 NM_018394 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 287.5-24 chr5 174186547 174186851 + 1 NA Intergenic Intergenic 140993 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 284.5-8 chr10 67283624 67284175 + 1 NA intron (NM_001127384, intron 5 of 17) MER39B|LTR|ERV1 119511 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 161.5-19 chr5 149702743 149703019 + 1 NA Intergenic Intergenic -27429 NM_001172698 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 249.5-38 chr8 110568665 110569024 + 1 NA Intergenic THE1A|LTR|ERVL-MaLR 458589 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 125.5-7 chr22 34936820 34936990 + 1 NA intron (NR_138042, intron 1 of 4) L1MA6|LINE|L1 61011 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 149.5-15 chr5 168739955 168740183 + 1 NA intron (NM_003062, intron 20 of 35) Charlie1a|DNA|hAT-Charlie 28186 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 240.5-7 chr16 54256960 54257355 + 1 NA intron (NR_126340, intron 1 of 2) intron (NR_126340, intron 1 of 2) 13722 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 190.5-5 chr12 2510237 2510590 + 1 NA intron (NM_199460, intron 8 of 49).2 intron (NM_199460, intron 8 of 49).2 161807 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 147.5-2 chr1 158666850 158667090 + 1 NA intron (NM_003126, intron 15 of 51) intron (NM_003126, intron 15 of 51) 19745 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 130.5-6 chr15 43027551 43027755 + 1 NA intron (NM_174916, intron 22 of 46) intron (NM_174916, intron 22 of 46) 78385 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 226.5 chr1 42813870 42814183 + 1 NA intron (NM_199342, intron 2 of 2) L2a|LINE|L2 -3096 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 220.5-31 chr6 138290428 138290756 + 1 NA intron (NM_020340, intron 18 of 33) intron (NM_020340, intron 18 of 33) -72102 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 256.5-13 chr17 40152052 40152349 + 1 NA intron (NM_007359, intron 3 of 13) AluJr|SINE|Alu -9733 NR_106926 102466986 NR_106926 ENSG00000284144 MIR6866 hsa-mir-6866 microRNA 6866 ncRNA 218.5-25 chr5 147645831 147646256 + 1 NA intron (NM_001282282, intron 4 of 20) intron (NM_001282282, intron 4 of 20) 86049 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 197.5-24 chr20 53878620 53878972 + 1 NA Intergenic Intergenic -3087 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 224.5-16 chr2 41111187 41111537 + 1 NA Intergenic Intergenic -598927 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 239.5-4 chr12 55787444 55787683 + 1 NA intron (NM_033082, intron 9 of 10) AluSx|SINE|Alu 30161 NM_033082 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 146.5-35 chr8 139397494 139397741 + 1 NA Intergenic LTR34|LTR|ERV1 305506 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 259.5-19 chr2 127541624 127542023 + 1 NA intron (NM_001080527, intron 1 of 46) intron (NM_001080527, intron 1 of 46) 6021 NM_001080527 4648 Hs.154578 NM_183371 ENSG00000169994 MYO7B - myosin VIIB protein-coding 203.5-14 chr19 43314844 43315229 + 1 NA Intergenic HERVIP10F-int|LTR|ERV1 -34020 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 405.5-16 chr4 57802195 57802723 + 1 NA Intergenic L1ME3C|LINE|L1 376587 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 146.5-20 chr2 102086177 102086377 + 1 NA intron (NM_001320978, intron 1 of 11) L1M4a1|LINE|L1 15887 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 354.5-15 chr2 71451576 71452273 + 1 NA Intergenic L2a|LINE|L2 -1637 NM_001130976 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 164.5-6 chr11 67231298 67231529 + 1 NA intron (NR_027473, intron 11 of 20) intron (NR_027473, intron 11 of 20) -8601 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 208.5-8 chr18 49645181 49645531 + 1 NA Intergenic L2c|LINE|L2 83299 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 131.5-6 chr11 11620515 11620741 + 1 NA intron (NM_001363464, intron 1 of 9) CpG 1377 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 324.5-36 chr7 6650001 6650637 + 1 NA intron (NM_001278559, intron 8 of 8) intron (NM_001278559, intron 8 of 8) 13001 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 298.5-18 chr3 97490312 97490742 + 1 NA intron (NM_001080448, intron 10 of 17) intron (NM_001080448, intron 10 of 17) 50920 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 117.5-5 chr10 108755215 108755412 + 1 NA Intergenic Intergenic -686020 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 199.5-6 chr10 103091005 103091277 + 1 NA TTS (NM_017649) TTS (NM_017649) 62680 NM_001351191 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 316.5-8 chr12 8968831 8969340 + 1 NA intron (NR_137427, intron 1 of 2) intron (NR_137427, intron 1 of 2) 19041 NM_001329103 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 155.5-12 chr4 43125698 43125878 + 1 NA Intergenic L2a|LINE|L2 232522 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 182.5-19 chr3 34425945 34426249 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 627467 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 147.5-21 chrX 64902156 64902443 + 1 NA Intergenic L1PB1|LINE|L1 74151 NM_018684 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 211.5-35 chr8 14657550 14657879 + 1 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 195796 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 258.5-15 chr3 96630009 96630399 + 1 NA Intergenic Intergenic -184390 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 199.5-2 chr1 164714820 164715089 + 1 NA intron (NM_001204963, intron 2 of 8) MIR|SINE|MIR 59687 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 199.5-31 chr5 56719078 56719467 + 1 NA Intergenic Intergenic 53599 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 192.5-9 chr14 51606706 51607014 + 1 NA intron (NM_001042481, intron 2 of 14) Ricksha_c|DNA|MULE-MuDR -6908 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 335.5-10 chr14 60686698 60687154 + 1 NA Intergenic Intergenic 37425 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 129.5-9 chr2 21675734 21675863 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 34854 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 190.5-13 chr20 38392776 38392970 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 32457 NR_002910 26776 Hs.400876 NR_002910 ENSG00000235408 SNORA71B RNU71B|U71b small nucleolar RNA, H/ACA box 71B snoRNA 123.5-5 chr11 113021979 113022170 + 1 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -58614 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 335.5-22 chr2 184619160 184619769 + 1 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 20935 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 278.5-3 chr12 114773452 114773864 + 1 NA Intergenic AluSg|SINE|Alu -89483 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 139.5-18 chr6 91316780 91317012 + 1 NA Intergenic Intergenic -204764 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 231.5-24 chr5 43029197 43029600 + 1 NA intron (NR_104651, intron 2 of 2) intron (NR_104651, intron 2 of 2) -9755 NR_104650 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 121.5-14 chr4 72501125 72501258 + 1 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 68030 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 179.5-20 chr8 119258084 119258326 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11348 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 246.5-5 chr11 47941821 47942238 + 1 NA Intergenic MIR1_Amn|SINE|MIR -38530 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 281.5-29 chr5 43129080 43129459 + 1 NA intron (NM_001330705, intron 3 of 5) AluJr|SINE|Alu 7704 NM_001330717 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 373.5-11 chr17 42081710 42082127 + 1 NA Intergenic Intergenic 30796 NM_024119 79132 Hs.55918 NM_024119 ENSG00000108771 DHX58 D11LGP2|D11lgp2e|LGP2|RLR-3 DExH-box helicase 58 protein-coding 248.5-32 chr9 37553362 37553807 + 1 NA intron (NM_012166, intron 1 of 10) L1MD2|LINE|L1 22796 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 218.5-17 chr2 209520978 209521279 + 1 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -58208 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 205.5-27 chr6 167096784 167097049 + 1 NA Intergenic AluSx|SINE|Alu -14891 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 290.5-23 chr5 149327021 149327517 + 1 NA intron (NM_152406, intron 15 of 18) intron (NM_152406, intron 15 of 18) -18230 NM_152407 134266 Hs.511816 NM_152407 ENSG00000164284 GRPEL2 Mt-GrpE#2 GrpE like 2, mitochondrial protein-coding 259.5-40 chr6 136229673 136230121 + 1 NA Intergenic AluJb|SINE|Alu 20414 NM_138419 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 314.5-35 chr8 55797000 55797509 + 1 NA intron (NM_001317902, intron 6 of 10) THE1C|LTR|ERVL-MaLR 23808 NM_024831 96764 Hs.335068 NM_024831 ENSG00000137574 TGS1 NCOA6IP|PIMT|PIPMT trimethylguanosine synthase 1 protein-coding 117.5-4 chr10 59755844 59756015 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -2474 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 144.5-3 chr11 73544171 73544422 + 1 NA intron (NM_001286051, intron 1 of 5) L1MB8|LINE|L1 53816 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 237.5-18 chr4 156187080 156187388 + 1 NA Intergenic MIR|SINE|MIR -233368 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 149.5-7 chr18 4753608 4753877 + 1 NA Intergenic MER30|DNA|hAT-Charlie -298435 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 147.5-3 chr10 18968471 18968759 + 1 NA Intergenic L1PA17|LINE|L1 -80186 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 116.5-17 chr6 41214762 41214933 + 1 NA intron (NR_027256, intron 3 of 4) LTR10A|LTR|ERV1 3100 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 255.5-8 chr14 43415985 43416324 + 1 NA Intergenic L1PA10|LINE|L1 1091129 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 178.5-22 chr7 48493882 48494101 + 1 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 322533 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 254.5-24 chr19 10542830 10543324 + 1 NA promoter-TSS (NR_104024) promoter-TSS (NR_104024) -827 NR_104024 84971 Hs.512799 NM_032885 ENSG00000130734 ATG4D APG4-D|APG4D|AUTL4 autophagy related 4D cysteine peptidase protein-coding 113.5-3 chr16 54335041 54335154 + 1 NA Intergenic L1ME3C|LINE|L1 35361 NR_134922 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 240.5-13 chr20 56352826 56353226 + 1 NA Intergenic Intergenic -5948 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 214.5-39 chr9 79637449 79637706 + 1 NA intron (NM_001351547, intron 5 of 18) intron (NM_001351547, intron 5 of 18) 64400 NM_001351556 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 206.5-35 chr7 45023532 45023896 + 1 NA intron (NM_001363459, intron 1 of 9) intron (NM_001363459, intron 1 of 9) -3920 NM_001029835 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffold protein protein-coding 296.5-19 chr20 60192021 60192466 + 1 NA intron (NR_046099, intron 3 of 4) LTR54B|LTR|ERV1 53751 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 242.5-20 chr3 76448917 76449376 + 1 NA Intergenic Intergenic -590953 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 145.5-17 chr2 159443836 159444078 + 1 NA intron (NM_001329858, intron 6 of 36) intron (NM_001329858, intron 6 of 36) -157254 NM_001330280 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 277.5 chr1 26754318 26754777 + 1 NA intron (NM_139135, intron 4 of 19) MIR3|SINE|MIR -33416 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 260.5-4 chr10 122245433 122245836 + 1 NA intron (NM_206862, intron 19 of 22) intron (NM_206862, intron 19 of 22) -25662 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 175.5-9 chr17 27082833 27083144 + 1 NA intron (NR_135673, intron 1 of 3) intron (NR_135673, intron 1 of 3) 6253 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 136.5-4 chr11 44921185 44921417 + 1 NA intron (NM_130783, intron 8 of 9) MIR3|SINE|MIR 28859 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 157.5-27 chrX 107895378 107895627 + 1 NA non-coding (NR_110395, exon 4 of 4) non-coding (NR_110395, exon 4 of 4) 40478 NR_110395 101928335 Hs.657090 NR_110395 ENSG00000236064 LOC101928335 - uncharacterized LOC101928335 ncRNA 396.5-8 chr10 68913049 68913692 + 1 NA intron (NM_024045, intron 5 of 14) intron (NM_024045, intron 5 of 14) 12055 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 300.5-3 chr1 173055249 173055828 + 1 NA Intergenic Intergenic -4575 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 151.5-22 chr6 151249692 151249988 + 1 NA intron (NM_005100, intron 2 of 4) intron (NM_005100, intron 2 of 4) 9873 NM_005100 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 294.5-9 chr11 77979155 77979688 + 1 NA intron (NM_033547, intron 3 of 22) AluJb|SINE|Alu 15247 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 116.5-14 chr5 23425641 23425863 + 1 NA Intergenic MLT2B4|LTR|ERVL -81857 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 171.5-5 chr12 16224461 16224721 + 1 NA exon (NM_001170798, exon 6 of 9) exon (NM_001170798, exon 6 of 9) 53094 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 292.5-19 chr21 31487742 31488137 + 1 NA intron (NM_003253, intron 1 of 28) AluSx1|SINE|Alu 71148 NM_001353688 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 338.5-29 chr6 120968626 120969234 + 1 NA Intergenic L1MA7|LINE|L1 365550 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 241.5-11 chr15 26801091 26801533 + 1 NA Intergenic L1M5|LINE|L1 -27549 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 187.5-14 chr2 184930822 184931034 + 1 NA intron (NM_194250, intron 2 of 3) THE1B|LTR|ERVL-MaLR 236144 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 211.5-14 chr17 28172397 28172685 + 1 NA exon (NM_016231, exon 7 of 11) exon (NM_016231, exon 7 of 11) -54022 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 352.5-22 chr3 147486275 147486831 + 1 NA intron (NR_121655, intron 1 of 2) Chap1_Mam|DNA|hAT-Charlie 65226 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 197.5-21 chr2 180478289 180478579 + 1 NA Intergenic Intergenic -213670 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 221.5-12 chr17 43903902 43904223 + 1 NA intron (NM_001278371, intron 1 of 11) intron (NM_001278371, intron 1 of 11) -2500 NM_001278375 4355 Hs.514208 NM_005374 ENSG00000108852 MPP2 DLG2 membrane palmitoylated protein 2 protein-coding 381.5-14 chr3 17373182 17373605 + 1 NA intron (NM_014744, intron 12 of 21) intron (NM_014744, intron 12 of 21) 326627 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 207.5-24 chr3 102001452 102001703 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 60718 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 196.5-19 chr2 109728768 109729127 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack -63811 NM_001037866 729540 Hs.535589 NM_001037866 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2 like and GRIP domain containing 6 protein-coding 229.5-3 chr10 39349792 39350201 + 1 NA Intergenic ALR/Alpha|Satellite|centr 653400 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 113.5-7 chr2 189536701 189536910 + 1 NA Intergenic MIRb|SINE|MIR 44006 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 363.5-14 chr2 6859482 6860158 + 1 NA intron (NR_046236, intron 3 of 4) THE1B-int|LTR|ERVL-MaLR 5999 NM_001256478 129607 Hs.7155 NM_207315 ENSG00000134326 CMPK2 NDK|TMPK2|TYKi|UMP-CMPK2 cytidine/uridine monophosphate kinase 2 protein-coding 173.5-9 chr13 83015245 83015523 + 1 NA Intergenic Intergenic 867009 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 336.5-17 chr5 25236511 25237042 + 1 NA intron (NR_136209, intron 1 of 3) L1MB3|LINE|L1 45823 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 149.5-12 chr4 29572198 29572412 + 1 NA Intergenic Intergenic 358013 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 406.5-9 chr16 87553325 87553744 + 1 NA Intergenic AluSx|SINE|Alu -48301 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 296.5-2 chr1 178255846 178256434 + 1 NA intron (NM_170692, intron 1 of 17) L1MB8|LINE|L1 -85311 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 158.5-14 chr2 225328051 225328305 + 1 NA Intergenic MER49|LTR|ERV1 -71532 NM_001371273 177.5-29 chr8 144032631 144032898 + 1 NA intron (NM_198572, intron 1 of 4) intron (NM_198572, intron 1 of 4) -16634 NR_158554 392275 NR_158554 SMPD5 MA-nSMase sphingomyelin phosphodiesterase 5 pseudo 328.5-4 chr1 226146318 226146880 + 1 NA 3' UTR (NM_022735, exon 8 of 8) 3' UTR (NM_022735, exon 8 of 8) -1404 NR_146443 107985353 Hs.735455 NR_146443 ENSG00000234478 ACBD3-AS1 - ACBD3 antisense RNA 1 ncRNA 165.5-19 chr5 146221030 146221351 + 1 NA intron (NM_018989, intron 2 of 20) intron (NM_018989, intron 2 of 20) 17585 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 194.5-4 chr10 120738203 120738508 + 1 NA Intergenic Intergenic 112824 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 247.5-8 chr11 89491497 89491837 + 1 NA promoter-TSS (NM_001143836) promoter-TSS (NM_001143836) -102 NR_120406 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 218.5-18 chr20 19015112 19015331 + 1 NA Intergenic Intergenic -185018 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 208.5-22 chr3 44236649 44237045 + 1 NA Intergenic Intergenic -5039 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 320.5-18 chr20 15952040 15952660 + 1 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) -29036 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 201.5-5 chr10 132592806 132593192 + 1 NA intron (NM_005539, intron 1 of 15) MLT1E1|LTR|ERVL-MaLR 55212 NM_005539 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 198.5-5 chr10 92614383 92614678 + 1 NA intron (NM_004523, intron 8 of 21) intron (NM_004523, intron 8 of 21) 21400 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 372.5-18 chr4 53531989 53532504 + 1 NA intron (NM_001126328, intron 2 of 10) AluSx|SINE|Alu 26023 NM_032622 84708 Hs.518760 NM_032622 ENSG00000072201 LNX1 LNX|MPDZ|PDZRN2 ligand of numb-protein X 1 protein-coding 228.5-20 chr3 24907439 24907820 + 1 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 78306 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 183.5-24 chr5 59559216 59559488 + 1 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 27146 NM_006203 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 143.5-11 chr2 64577720 64577892 + 1 NA intron (NM_001002243, intron 6 of 8) L1MC4a|LINE|L1 -29506 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 174.5-16 chr2 126030338 126030513 + 1 NA Intergenic LTR33A_|LTR|ERVL 87560 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 270.5-29 chr7 73839494 73839941 + 1 NA intron (NM_152559, intron 5 of 5) MIRb|SINE|MIR 2799 NM_152559 155368 Hs.647042 NM_152559 ENSG00000165171 METTL27 WBSCR27 methyltransferase like 27 protein-coding 239.5-27 chr9 13083954 13084381 + 1 NA Intergenic Intergenic -111534 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 396.5-18 chr2 81379616 81380307 + 1 NA Intergenic L1MEc|LINE|L1 86985 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 215.5-3 chr1 205784855 205785214 + 1 NA Intergenic Intergenic -9552 NM_001135662 8934 Hs.115325 NM_003929 ENSG00000117280 RAB29 RAB7L|RAB7L1 RAB29, member RAS oncogene family protein-coding 129.5-15 chr4 62578867 62579046 + 1 NA Intergenic L1ME3|LINE|L1 -417191 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 194.5-32 chr8 65925229 65925473 + 1 NA Intergenic L1MB7|LINE|L1 -83287 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 180.5-10 chr21 33877757 33878014 + 1 NA intron (NM_001331010, intron 33 of 38) L1MEd|LINE|L1 37919 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 115.5 chr1 54849127 54849265 + 1 NA TTS (NM_014762) TTS (NM_014762) 37999 NM_014762 1718 Hs.498727 NM_014762 ENSG00000116133 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 185.5-17 chr2 114875018 114875343 + 1 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -41632 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 198.5-4 chr10 59845649 59845849 + 1 NA intron (NM_005436, intron 2 of 8) intron (NM_005436, intron 2 of 8) 60807 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 175.5-29 chr7 28352726 28352981 + 1 NA intron (NM_182899, intron 1 of 9) MIR|SINE|MIR 53532 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 452.5-15 chr5 30808022 30808569 + 1 NA Intergenic Intergenic -385391 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 144.5-21 chr6 112894812 112895015 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger 538534 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 210.5-13 chr20 19380617 19380886 + 1 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -96155 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 324.5-14 chr13 58073280 58073624 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -92375 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 293.5-12 chr16 11560279 11560856 + 1 NA intron (NR_024320, intron 1 of 3) AluSz|SINE|Alu 25806 NM_004862 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 287.5-13 chr2 4633572 4634079 + 1 NA intron (NR_034134, intron 4 of 4) intron (NR_034134, intron 4 of 4) 22397 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 119.5-15 chr6 150919960 150920140 + 1 NA intron (NM_001350486, intron 9 of 27) MLT1F1|LTR|ERVL-MaLR 53564 NM_001350491 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 174.5-26 chr4 43601669 43601925 + 1 NA Intergenic MIR|SINE|MIR -109254 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 194.5-12 chr19 44015931 44016203 + 1 NA Intergenic Intergenic -9275 NM_013360 7673 Hs.279840 NM_013360 ENSG00000159885 ZNF222 - zinc finger protein 222 protein-coding 116.5-12 chr3 191868081 191868270 + 1 NA Intergenic Intergenic -370455 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 116.5-11 chr3 155580451 155580638 + 1 NA intron (NM_001349252, intron 6 of 24) intron (NM_001349252, intron 6 of 24) 94741 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 167.5-9 chr15 77739566 77739793 + 1 NA intron (NM_001301186, intron 2 of 5) intron (NM_001301186, intron 2 of 5) -18928 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 212.5-22 chr21 29316884 29317288 + 1 NA intron (NR_027655, intron 1 of 7) MER1B|DNA|hAT-Charlie 11882 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 183.5-15 chr18 4199589 4199827 + 1 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -64894 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 130.5-4 chr11 20787897 20788138 + 1 NA intron (NM_001288714, intron 3 of 18) L1MB8|LINE|L1 118431 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 243.5-33 chr8 125814270 125814561 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR 136782 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 165.5-13 chr22 33404431 33404726 + 1 NA intron (NM_133642, intron 7 of 14) intron (NM_133642, intron 7 of 14) 32091 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 239.5-9 chr16 60452182 60452579 + 1 NA Intergenic Intergenic -92587 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 192.5-12 chr17 17063396 17063671 + 1 NA intron (NM_201274, intron 1 of 23) intron (NM_201274, intron 1 of 23) 20773 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 284.5-4 chr1 72692163 72692603 + 1 NA Intergenic MER50-int|LTR|ERV1 -409844 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 193.5-30 chr8 113972505 113972835 + 1 NA Intergenic Intergenic -535731 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 282.5-22 chr4 37699114 37699664 + 1 NA Intergenic Intergenic -13013 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 132.5-8 chr12 9109263 9109460 + 1 NA exon (NM_001347424, exon 7 of 36) exon (NM_001347424, exon 7 of 36) 6868 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 374.5-18 chr2 158479279 158479712 + 1 NA intron (NM_001005476, intron 1 of 20) AluJb|SINE|Alu 22543 NM_003628 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 164.5-5 chr11 34444889 34445108 + 1 NA intron (NM_001752, intron 1 of 12) intron (NM_001752, intron 1 of 12) 6064 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 323.5-7 chr10 88724349 88724788 + 1 NA promoter-TSS (NM_001080518) promoter-TSS (NM_001080518) 24 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 214.5-21 chr3 158701032 158701432 + 1 NA intron (NM_206963, intron 4 of 5) intron (NM_206963, intron 4 of 5) -28584 NM_020169 56925 Hs.478067 NM_020169 ENSG00000079257 LXN ECI|TCI latexin protein-coding 248.5-15 chr20 33284269 33284620 + 1 NA intron (NM_033197, intron 1 of 15) L2b|LINE|L2 1230 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 204.5-29 chr5 51422928 51423194 + 1 NA Intergenic Intergenic 39613 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 220.5-13 chr14 82619071 82619413 + 1 NA Intergenic L1ME1|LINE|L1 -23390 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 222.5-9 chr17 56576826 56577160 + 1 NA Intergenic Intergenic -16706 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 190.5-14 chr3 22891531 22891755 + 1 NA Intergenic L2|LINE|L2 310935 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 349.5-5 chr11 71102988 71103631 + 1 NA intron (NM_012309, intron 5 of 24) intron (NM_012309, intron 5 of 24) 121487 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 268.5-22 chr5 23205930 23206250 + 1 NA Intergenic MIRb|SINE|MIR -301519 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 376.5-29 chr7 115787741 115788346 + 1 NA Intergenic L2a|LINE|L2 180270 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 261.5-27 chr4 12769053 12769522 + 1 NA Intergenic Intergenic 545836 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 161.5-16 chr4 72918129 72918376 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 151464 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 324.5-33 chr5 77465770 77466337 + 1 NA intron (NM_018268, intron 2 of 12) intron (NM_018268, intron 2 of 12) 26263 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 216.5-39 chr8 136040236 136040502 + 1 NA Intergenic Intergenic -490429 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 322.5-14 chr2 101811887 101812353 + 1 NA intron (NM_145686, intron 3 of 30) intron (NM_145686, intron 3 of 30) 114413 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 399.5-5 chr13 98901076 98901581 + 1 NA intron (NM_001366682, intron 13 of 53) intron (NM_001366682, intron 13 of 53) 69244 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 371.5-26 chr7 133586117 133586649 + 1 NA intron (NM_021807, intron 9 of 17) L1PA15|LINE|L1 238505 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 165.5-8 chr2 13538437 13538669 + 1 NA Intergenic Intergenic -531540 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 327.5-24 chr5 147287331 147287957 + 1 NA intron (NM_001112724, intron 4 of 12) intron (NM_001112724, intron 4 of 12) 52618 NM_001287740 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 166.5-18 chr5 56331249 56331481 + 1 NA Intergenic L2|LINE|L2 -98035 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 150.5-12 chr2 150754837 150755075 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 126059 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 270.5 chr1 38813183 38813453 + 1 NA Intergenic Intergenic 46454 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 247.5-28 chr7 98042371 98042802 + 1 NA Intergenic AluSz|SINE|Alu -52482 NM_006188 4951 Hs.510456 NM_006188 ENSG00000135175 OCM2 OCM|OM oncomodulin 2 protein-coding 145.5-30 chr8 131791283 131791479 + 1 NA Intergenic L2c|LINE|L2 -112712 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 156.5-25 chr7 98860053 98860209 + 1 NA intron (NM_152913, intron 3 of 7) intron (NM_152913, intron 3 of 7) 9883 NM_001134451 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 202.5-15 chr2 22917473 22917701 + 1 NA Intergenic Intergenic 381108 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 225.5-10 chr12 3042109 3042477 + 1 NA Intergenic Intergenic -35062 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 241.5 chr1 25526854 25527276 + 1 NA Intergenic MIRb|SINE|MIR -16520 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 312.5-21 chr4 37420967 37421414 + 1 NA intron (NM_001144990, intron 3 of 6) L2|LINE|L2 -32735 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 292.5-6 chr11 17275358 17275869 + 1 NA Intergenic AluJo|SINE|Alu -1101 NM_001352663 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 170.5-10 chr15 69680245 69680488 + 1 NA intron (NR_126438, intron 3 of 3) intron (NR_126438, intron 3 of 3) 88166 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 131.5-19 chr22 26355287 26355433 + 1 NA intron (NM_001184777, intron 12 of 14) intron (NM_001184777, intron 12 of 14) -73900 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 208.5-20 chr3 4726572 4726889 + 1 NA intron (NM_001168272, intron 40 of 60) intron (NM_001168272, intron 40 of 60) 24860 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 184.5-16 chr20 55041211 55041559 + 1 NA Intergenic THE1A-int|LTR|ERVL-MaLR -381658 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 119.5-16 chr7 86320958 86321122 + 1 NA Intergenic Intergenic -322869 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 290.5-7 chr11 41873928 41874381 + 1 NA Intergenic Intergenic 159586 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 268.5-25 chr5 59608050 59608450 + 1 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -20625 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 322.5-25 chr7 2568045 2568543 + 1 NA intron (NM_152558, intron 2 of 21) Tigger4b|DNA|TcMar-Tigger 9315 NM_152558 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 206.5-30 chr4 154237184 154237536 + 1 NA intron (NM_001358235, intron 19 of 19) intron (NM_001358235, intron 19 of 19) 254439 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 234.5-12 chr17 79042552 79042954 + 1 NA intron (NM_198593, intron 1 of 3) intron (NM_198593, intron 1 of 3) 8454 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 205.5-5 chr14 54205184 54205421 + 1 NA Intergenic L4_B_Mam|LINE|RTE-X -191566 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 306.5-28 chr4 95689621 95690181 + 1 NA Intergenic L1MDa|LINE|L1 -140928 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 380.5-14 chr2 110143452 110144203 + 1 NA intron (NM_207181, intron 15 of 19) intron (NM_207181, intron 15 of 19) -27261 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 175.5-30 chr9 36865132 36865389 + 1 NA promoter-TSS (NR_039766) promoter-TSS (NR_039766) -952 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 314.5-18 chr2 137966716 137967264 + 1 NA intron (NM_001024075, intron 1 of 2) HAL1|LINE|L1 2517 NM_001024074 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 390.5-35 chrX 84611023 84611415 + 1 NA Intergenic L1MEg|LINE|L1 -108766 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 185.5-11 chr16 82891202 82891479 + 1 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 98958 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 188.5-20 chr4 103094120 103094374 + 1 NA intron (NM_020139, intron 3 of 9) MER33|DNA|hAT-Charlie 5587 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 116.5-2 chr10 44298614 44298778 + 1 NA Intergenic L1M5|LINE|L1 5946 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 401.5 chr1 27396398 27396902 + 1 NA TTS (NM_005281) TTS (NM_005281) 4028 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 350.5-10 chr5 4196844 4197440 + 1 NA Intergenic Intergenic -576339 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 159.5-23 chr3 180350813 180351064 + 1 NA Intergenic L1MA10|LINE|L1 -63235 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 301.5-13 chr21 10689747 10690080 + 1 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 168399 NM_001290224 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 118.5-16 chr9 127135349 127135533 + 1 NA intron (NM_001190729, intron 8 of 17) intron (NM_001190729, intron 8 of 17) -12806 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 157.5-20 chr4 54747704 54747972 + 1 NA Intergenic Intergenic 89910 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 314.5-23 chr22 41619796 41620269 + 1 NA intron (NM_015704, intron 1 of 5) intron (NM_015704, intron 1 of 5) 1011 NM_015704 27351 Hs.570455 NM_015704 ENSG00000100418 DESI1 D15Wsu75e|DESI2|DJ347H13.4|DeSI-1|FAM152B|POST|PPPDE2 desumoylating isopeptidase 1 protein-coding 331.5-28 chr8 141915093 141915524 + 1 NA Intergenic L1ME3D|LINE|L1 -128995 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 287.5-27 chr8 50586590 50587035 + 1 NA intron (NR_135797, intron 14 of 20) intron (NR_135797, intron 14 of 20) 422681 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 118.5-6 chr2 67247327 67247517 + 1 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) -32103 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 221.5-13 chr17 48083167 48083566 + 1 NA intron (NM_001127228, intron 1 of 4) HAL1|LINE|L1 17820 NM_006807 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 163.5-11 chr2 160214246 160214429 + 1 NA Intergenic Intergenic -14024 NM_001282354 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 293.5-8 chr12 41505364 41505793 + 1 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 67839 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 218.5-33 chr8 27405600 27405868 + 1 NA intron (NM_173175, intron 2 of 29) intron (NM_173175, intron 2 of 29) -27636 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 229.5-31 chr4 60431054 60431387 + 1 NA Intergenic L2a|LINE|L2 -491399 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 284.5-2 chr1 37383057 37383464 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 91183 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 270.5-18 chr2 216443081 216443468 + 1 NA intron (NM_001127207, intron 10 of 17) AluSz|SINE|Alu 30509 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 253.5-22 chr22 41072389 41072768 + 1 NA Intergenic L1M5|LINE|L1 1143 NR_132979 106635682 NR_132979 SNORD140 - small nucleolar RNA, C/D box 140 snoRNA 291.5-20 chr6 156497171 156497570 + 1 NA Intergenic Intergenic 118620 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 249.5-11 chr17 2306151 2306456 + 1 NA intron (NM_001304803, intron 1 of 6) AluSx1|SINE|Alu 2353 NM_021947 63826 Hs.461954 NM_021947 ENSG00000167720 SRR ILV1|ISO1 serine racemase protein-coding 275.5-37 chrX 50122771 50123174 + 1 NA Intergenic AluJb|SINE|Alu 53471 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 196.5-23 chr22 26991972 26992304 + 1 NA Intergenic Intergenic 68380 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 243.5-10 chr12 128876315 128876745 + 1 NA intron (NM_144669, intron 2 of 7) AluJb|SINE|Alu 23052 NM_001366887 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 192.5-26 chr5 31351879 31352243 + 1 NA Intergenic Intergenic 158375 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 112.5-2 chr1 119079471 119079664 + 1 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) 32162 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 117.5-7 chr14 57510990 57511130 + 1 NA Intergenic MIR|SINE|MIR -17203 NM_001283060 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 166.5-23 chr8 121189439 121189682 + 1 NA Intergenic Intergenic -377514 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 185.5-28 chr5 55312807 55313075 + 1 NA intron (NM_015360, intron 1 of 26) L1MC5a|LINE|L1 4952 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 245.5-18 chr2 63063756 63064147 + 1 NA Intergenic Intergenic 13121 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 137.5-17 chr2 71187515 71187655 + 1 NA 3' UTR (NM_020459, exon 4 of 4) 3' UTR (NM_020459, exon 4 of 4) 39518 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 186.5-22 chr4 89264178 89264482 + 1 NA intron (NM_198281, intron 1 of 1) MSTB1|LTR|ERVL-MaLR 43470 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 140.5-4 chr1 229983519 229983787 + 1 NA Intergenic Intergenic -19064 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 198.5-3 chr1 90205402 90205754 + 1 NA Intergenic Intergenic 210468 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 345.5-30 chr6 150331183 150331650 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -37596 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 334.5-17 chr20 62033697 62034258 + 1 NA intron (NM_003185, intron 1 of 14) AluY|SINE|Alu -30825 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 354.5-30 chr5 80629894 80630347 + 1 NA intron (NM_001290357, intron 4 of 4) AluSx1|SINE|Alu -7596 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 115.5-9 chr2 31603190 31603382 + 1 NA Intergenic L1PA11|LINE|L1 -22348 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 159.5-15 chr2 70462360 70462612 + 1 NA intron (NM_003236, intron 3 of 5) intron (NM_003236, intron 3 of 5) 19154 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 174.5-3 chr10 75844479 75844752 + 1 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 61854 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 114.5-11 chr3 107479264 107479456 + 1 NA Intergenic L1MB8|LINE|L1 -43602 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 393.5-7 chr14 61514893 61515493 + 1 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 55001 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 273.5-25 chr6 126182113 126182418 + 1 NA Intergenic Intergenic -157524 NM_001012507 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 267.5-4 chr1 214699206 214699608 + 1 NA Intergenic Intergenic 96212 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 366.5-24 chr4 59985247 59985822 + 1 NA Intergenic MLT2F|LTR|ERVL -937085 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 143.5-20 chr4 142568024 142568167 + 1 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 278440 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 198.5-15 chr21 25018626 25019001 + 1 NA intron (NR_046198, intron 2 of 3) A-rich|Low_complexity|Low_complexity 178263 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 220.5-7 chr12 15342027 15342284 + 1 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 19647 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 311.5-21 chr19 32894730 32895181 + 1 NA intron (NM_032816, intron 16 of 18) L1MA4A|LINE|L1 -25188 NM_014270 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 142.5-9 chr2 235406585 235406800 + 1 NA Intergenic Intergenic -87351 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 182.5-5 chr14 76154115 76154362 + 1 NA promoter-TSS (NM_017972) promoter-TSS (NM_017972) -116 NR_110314 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 232.5-29 chr7 92120589 92120937 + 1 NA intron (NM_000786, intron 7 of 9) L1MB7|LINE|L1 13714 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 188.5-25 chr5 159594830 159595055 + 1 NA Intergenic Intergenic -128666 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 233.5-5 chr13 82936160 82936547 + 1 NA Intergenic Intergenic 946040 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 164.5-26 chr7 38732729 38733014 + 1 NA intron (NM_014396, intron 25 of 28) AluJb|SINE|Alu -45782 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 141.5 chr1 82724776 82725042 + 1 NA Intergenic Intergenic -178274 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 135.5-12 chr6 115513521 115513682 + 1 NA Intergenic Intergenic 130234 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 171.5-24 chr5 157853840 157854106 + 1 NA intron (NM_001195556, intron 1 of 11) intron (NM_001195556, intron 1 of 11) 5172 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 215.5-31 chr3 167338389 167338648 + 1 NA intron (NM_001199202, intron 9 of 20) intron (NM_001199202, intron 9 of 20) 41765 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 225.5-35 chr8 120694609 120695057 + 1 NA intron (NM_021021, intron 1 of 6) L1ME4b|LINE|L1 -66420 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 310.5-43 chr8 103120906 103121367 + 1 NA non-coding (NR_145429, exon 1 of 6) non-coding (NR_145429, exon 1 of 6) 104 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 388.5-10 chr2 142396381 142397013 + 1 NA Intergenic L2|LINE|L2 -264996 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 239.5-17 chr5 6675935 6676316 + 1 NA Intergenic MER50C|LTR|ERV1 31586 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 200.5-11 chr12 2639499 2639757 + 1 NA intron (NM_001129836, intron 31 of 46) MIR3|SINE|MIR 32592 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 497.5-3 chr1 163147064 163147860 + 1 NA exon (NM_003617, exon 5 of 5) exon (NM_003617, exon 5 of 5) -14213 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 134.5-8 chr15 68678602 68678829 + 1 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 37212 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 155.5-6 chr2 39124967 39125122 + 1 NA Intergenic Intergenic -4581 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 122.5-18 chr6 42442983 42443205 + 1 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 8957 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 241.5-18 chr17 81373864 81374222 + 1 NA Intergenic L1M5|LINE|L1 11082 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 238.5-22 chr22 24047737 24048188 + 1 NA intron (NM_012295, intron 6 of 36) intron (NM_012295, intron 6 of 36) 36592 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 322.5-4 chr1 204362424 204362834 + 1 NA Intergenic AluJo|SINE|Alu -2700 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 127.5-3 chr13 107424570 107424788 + 1 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -103716 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 622.5-8 chr8 127890120 127891143 + 1 NA non-coding (NR_003367, exon 2 of 9) non-coding (NR_003367, exon 2 of 9) 58092 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 321.5-22 chr3 114469243 114469719 + 1 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 15888 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 324.5-11 chr11 121987173 121987587 + 1 NA Intergenic Intergenic 112464 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 213.5-2 chr1 54572942 54573253 + 1 NA intron (NM_015547, intron 1 of 16) intron (NM_015547, intron 1 of 16) 24869 NM_015547 26027 Hs.745173 NM_015547 ENSG00000162390 ACOT11 BFIT|STARD14|THEA|THEM1 acyl-CoA thioesterase 11 protein-coding 283.5-4 chr10 95031103 95031561 + 1 NA Intergenic L1PA15-16|LINE|L1 38165 NM_001198853 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 155.5-5 chr17 61409124 61409363 + 1 NA 3' UTR (NM_005994, exon 7 of 7) 3' UTR (NM_005994, exon 7 of 7) -2508 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 234.5 chr1 27826485 27826860 + 1 NA Intergenic Intergenic -4110 NM_138558 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 182.5-6 chr14 84125570 84125815 + 1 NA Intergenic Intergenic -1146240 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 335.5-4 chr10 62799197 62799784 + 1 NA Intergenic Intergenic -5230 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 163.5-9 chr2 123076874 123077101 + 1 NA Intergenic Intergenic -3506 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 130.5-13 chr2 62613741 62613984 + 1 NA Intergenic Intergenic -60016 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 296.5-27 chr4 94549315 94549853 + 1 NA intron (NM_001011516, intron 3 of 9) L1ME4b|LINE|L1 97642 NM_006457 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 320.5-26 chr5 15608322 15608881 + 1 NA intron (NR_109945, intron 1 of 2) MLT2C1|LTR|ERVL 6401 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 176.5-9 chr2 111713803 111714114 + 1 NA Intergenic Intergenic 57176 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 201.5-22 chr3 86999768 87000011 + 1 NA Intergenic Intergenic -8740 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 165.5-21 chr6 166438367 166438608 + 1 NA intron (NM_001006932, intron 15 of 21) intron (NM_001006932, intron 15 of 21) 26896 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 163.5-10 chr2 155162178 155162408 + 1 NA Intergenic Intergenic 463598 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 112.5-12 chr7 57419920 57420032 + 1 NA Intergenic Intergenic 14951 NR_036102 100422939 NR_036102 ENSG00000266168 MIR3147 mir-3147 microRNA 3147 ncRNA 193.5-20 chr22 21564171 21564523 + 1 NA intron (NM_001256355, intron 1 of 3) intron (NM_001256355, intron 1 of 3) -3200 NM_001256356 7332 Hs.108104 NM_003347 ENSG00000185651 UBE2L3 E2-F1|L-UBC|UBCH7|UbcM4 ubiquitin conjugating enzyme E2 L3 protein-coding 122.5-6 chr14 66310957 66311146 + 1 NA Intergenic L2c|LINE|L2 -175320 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 198.5-9 chr18 5721151 5721529 + 1 NA Intergenic Intergenic -27479 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 357.5-14 chr4 90438877 90439453 + 1 NA intron (NM_207491, intron 4 of 7) AluSg4|SINE|Alu 204134 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 145.5-6 chr11 66227554 66227808 + 1 NA intron (NM_018026, intron 11 of 23) intron (NM_018026, intron 11 of 23) -29613 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 183.5-17 chr19 51654236 51654584 + 1 NA Intergenic MER89|LTR|ERV1 -7531 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 260.5-5 chr11 105467099 105467485 + 1 NA Intergenic Intergenic -142781 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 229.5-39 chr6 129793933 129794256 + 1 NA Intergenic AluSx3|SINE|Alu 67221 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 250.5-43 chrX 151659343 151659780 + 1 NA intron (NM_173493, intron 9 of 15) intron (NM_173493, intron 9 of 15) -35697 NM_024082 79057 Hs.209253 NM_024082 ENSG00000130032 PRRG3 PRGP3|TMG3 proline rich and Gla domain 3 protein-coding 166.5-9 chr2 107794021 107794274 + 1 NA intron (NR_126370, intron 2 of 4) L1MD1|LINE|L1 32622 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 164.5-29 chr8 80113743 80114027 + 1 NA intron (NM_001025253, intron 1 of 7) L1MA5|LINE|L1 -33054 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 320.5-25 chr4 158541999 158542486 + 1 NA intron (NR_045583, intron 1 of 16) L1MC4|LINE|L1 20360 NR_045583 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 286.5-37 chrX 96576954 96577445 + 1 NA Intergenic Intergenic -107464 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 263.5-25 chr7 17213666 17213968 + 1 NA Intergenic Intergenic -84835 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 268.5-20 chr3 64067037 64067408 + 1 NA promoter-TSS (NR_045697) promoter-TSS (NR_045697) -742 NR_045697 100652759 Hs.731187 NR_045697 ENSG00000241111 PRICKLE2-AS1 - PRICKLE2 antisense RNA 1 ncRNA 161.5-25 chr8 128431868 128432112 + 1 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 132689 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 271.5-18 chr17 29801501 29801969 + 1 NA intron (NM_033389, intron 1 of 14) L2b|LINE|L2 -40303 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 128.5-15 chr18 6944238 6944415 + 1 NA intron (NM_005559, intron 61 of 62) intron (NM_005559, intron 61 of 62) -10351 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 120.5-12 chr3 56629422 56629645 + 1 NA intron (NM_001365638, intron 17 of 22) intron (NM_001365638, intron 17 of 22) 34513 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 198.5-22 chr6 53684349 53684651 + 1 NA Intergenic L1ME3G|LINE|L1 -18744 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 175.5-5 chr14 55609016 55609292 + 1 NA intron (NR_073129, intron 2 of 45) L1PA8A|LINE|L1 28947 NM_001079521 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 120.5-11 chr3 10849812 10849932 + 1 NA intron (NM_014229, intron 5 of 13) intron (NM_014229, intron 5 of 13) 33644 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 286.5-35 chr9 6165298 6165729 + 1 NA Intergenic Intergenic -49636 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 250.5-33 chr6 45432372 45432736 + 1 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 10279 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 225.5-28 chr3 32358917 32359306 + 1 NA intron (NM_178868, intron 2 of 3) intron (NM_178868, intron 2 of 3) -32742 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 341.5-12 chr14 59907799 59908336 + 1 NA Intergenic AluSq2|SINE|Alu -11646 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 129.5-16 chr5 73292413 73292631 + 1 NA Intergenic Intergenic -45384 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 371.5-9 chr15 95325596 95326063 + 1 NA intron (NR_034095, intron 1 of 3) L2|LINE|L2 1271 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 445.5-18 chr5 2930318 2930810 + 1 NA Intergenic Intergenic 12710 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 143.5-8 chr12 106429212 106429460 + 1 NA intron (NM_001160708, intron 13 of 27) AluSz6|SINE|Alu 71254 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 166.5-24 chr8 133490666 133490895 + 1 NA intron (NM_003033, intron 3 of 8) intron (NM_003033, intron 3 of 8) 81107 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 209.5-19 chr2 133088308 133088591 + 1 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 172892 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 291.5-21 chr7 7808460 7808876 + 1 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -90061 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 227.5-30 chr7 140402707 140403021 + 1 NA Intergenic AluJb|SINE|Alu -1194 NM_001008749 401409 Hs.583545 NM_001008749 ENSG00000146955 RAB19 RAB19B RAB19, member RAS oncogene family protein-coding 403.5-2 chr1 115561054 115561458 + 1 NA Intergenic L1MA4A|LINE|L1 -80714 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 122.5-22 chr8 132419705 132419894 + 1 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 27463 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 167.5-10 chr15 91898493 91898769 + 1 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 44327 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 214.5-8 chr16 8811783 8812167 + 1 NA intron (NM_000303, intron 6 of 7) intron (NM_000303, intron 6 of 7) 14136 NM_000303 5373 Hs.625732 NM_000303 ENSG00000140650 PMM2 CDG1|CDG1a|CDGS|PMI|PMI1|PMM 2 phosphomannomutase 2 protein-coding 173.5-4 chr1 151438571 151438846 + 1 NA intron (NM_001194938, intron 2 of 17) AluJb|SINE|Alu 3497 NM_207171 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 198.5-18 chr3 44616547 44616872 + 1 NA TTS (NR_046658) TTS (NR_046658) 8088 NR_046658 100874094 NR_046658 ENSG00000233509 ZNF197-AS1 - ZNF197 antisense RNA 1 ncRNA 173.5-28 chrX 34894236 34894428 + 1 NA Intergenic Intergenic -48464 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 258.5-2 chr10 58510379 58510876 + 1 NA Intergenic L2a|LINE|L2 -2245 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 289.5-2 chr1 63155317 63155733 + 1 NA Intergenic Intergenic -143054 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 145.5-15 chr17 73583265 73583550 + 1 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 61038 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 217.5-25 chr3 16005714 16006018 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 132095 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 213.5-35 chr8 122845862 122846191 + 1 NA intron (NM_001362797, intron 1 of 4) L2|LINE|L2 64371 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 150.5-21 chr7 121706999 121707266 + 1 NA Intergenic Intergenic -166029 NM_001369396 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 298.5-28 chr9 89006319 89006722 + 1 NA 3' UTR (NM_016848, exon 12 of 12) 3' UTR (NM_016848, exon 12 of 12) 15052 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 215.5-12 chr13 108251738 108252032 + 1 NA Intergenic L1PA15|LINE|L1 -17744 NM_006573 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 345.5-26 chr4 42958610 42959212 + 1 NA intron (NM_001080476, intron 1 of 3) L1MA9|LINE|L1 65645 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 201.5-23 chr3 116578073 116578340 + 1 NA Intergenic MLT2A1|LTR|ERVL 25733 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 172.5-4 chr11 115890692 115890945 + 1 NA Intergenic Intergenic -130618 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 124.5-14 chr8 89039513 89039697 + 1 NA Intergenic Intergenic -712122 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 187.5-10 chr14 78941601 78941887 + 1 NA intron (NM_004796, intron 7 of 16) MIRb|SINE|MIR -258238 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 172.5-15 chr6 26104843 26105110 + 1 NA TTS (NM_003542) TTS (NM_003542) 1028 NM_003542 8364 Hs.46423 NM_003542 ENSG00000197061 HIST1H4C H4/g|H4FG|dJ221C16.1 histone cluster 1 H4 family member c protein-coding 210.5-29 chr8 94019257 94019467 + 1 NA Intergenic Intergenic 102415 NM_001161779 54704 Hs.22265 NM_018444 ENSG00000164951 PDP1 PDH|PDP|PDPC|PPM2A|PPM2C pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding 232.5-12 chr12 56414756 56415125 + 1 NA Intergenic Intergenic 34486 NR_138471 8914 Hs.118631 NM_003920 ENSG00000111602 TIMELESS TIM|TIM1|hTIM timeless circadian regulator protein-coding 272.5-29 chr4 82220686 82221190 + 1 NA Intergenic Intergenic 153053 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 296.5-22 chr3 143454959 143455440 + 1 NA intron (NM_173653, intron 12 of 15) L1MD2|LINE|L1 112953 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 391.5-19 chr2 139365275 139366035 + 1 NA Intergenic Intergenic 468331 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 182.5-9 chr17 58428755 58429029 + 1 NA intron (NM_001080439, intron 5 of 5) L1MB5|LINE|L1 -11310 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 382.5-24 chr9 127852673 127853428 + 1 NA intron (NM_001114753, intron 1 of 14) MIR|SINE|MIR 1723 NM_001114753 2022 Hs.76753 NM_000118 ENSG00000106991 ENG END|HHT1|ORW1 endoglin protein-coding 532.5-13 chr4 99028046 99028777 + 1 NA intron (NM_015143, intron 1 of 10) L2b|LINE|L2 31024 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 143.5-3 chr1 209541442 209541606 + 1 NA Intergenic Intergenic -42190 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 420.5-4 chr14 51924328 51924983 + 1 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -6084 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 174.5-29 chr5 13546437 13546689 + 1 NA Intergenic Intergenic 397917 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 178.5-20 chr6 116352645 116352929 + 1 NA intron (NR_136524, intron 1 of 4) intron (NR_136524, intron 1 of 4) -17032 NM_001322939 29940 Hs.458358 NM_013352 ENSG00000111817 DSE DS-epi1|DSEP|DSEPI|EDSMC2|SART-2|SART2 dermatan sulfate epimerase protein-coding 270.5-6 chr11 13217735 13218202 + 1 NA Intergenic Intergenic -58684 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 257.5-13 chr12 47196344 47196855 + 1 NA intron (NM_001281429, intron 2 of 2) AluSx1|SINE|Alu 8787 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 245.5-17 chr2 23975535 23975788 + 1 NA intron (NM_181713, intron 3 of 6) AluSp|SINE|Alu -34424 NM_001346880 388931 Hs.407482 NM_001080473 ENSG00000205639 MFSD2B - major facilitator superfamily domain containing 2B protein-coding 113.5-10 chr21 23273924 23274082 + 1 NA Intergenic Intergenic 110832 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 302.5-16 chr17 18317076 18317559 + 1 NA exon (NM_144775, exon 1 of 2) exon (NM_144775, exon 1 of 2) 2024 NM_144775 140775 Hs.592944 NM_144775 ENSG00000176994 SMCR8 DENND8A SMCR8-C9orf72 complex subunit protein-coding 145.5-10 chr12 106057990 106058258 + 1 NA Intergenic Intergenic 81909 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 258.5-31 chr8 124787731 124788156 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -34042 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 302.5-14 chr14 52422316 52422730 + 1 NA Intergenic MIRb|SINE|MIR 108211 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 305.5-25 chr4 40008523 40009123 + 1 NA Intergenic AluSx|SINE|Alu -30867 NM_001100400 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 130.5-3 chr10 52433549 52433700 + 1 NA Intergenic Intergenic 21648 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 139.5-22 chr8 137676634 137676883 + 1 NA Intergenic Intergenic -263170 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 243.5-17 chr2 141607249 141607731 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 524211 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 203.5-37 chr9 90896424 90896735 + 1 NA 3' UTR (NM_003177, exon 14 of 14) 3' UTR (NM_003177, exon 14 of 14) 69159 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 300.5-16 chr15 86311937 86312237 + 1 NA intron (NR_046012, intron 2 of 3) intron (NR_046012, intron 2 of 3) 4881 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 261.5-3 chr10 23512103 23512571 + 1 NA Intergenic Intergenic 73068 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 277.5-16 chr18 54722890 54723328 + 1 NA Intergenic Intergenic -105368 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 147.5-5 chr12 60014345 60014632 + 1 NA Intergenic L1MEc|LINE|L1 325118 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 181.5-22 chr4 55251169 55251421 + 1 NA Intergenic Intergenic -94947 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 192.5-14 chr2 104892131 104892412 + 1 NA Intergenic Intergenic -19676 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 189.5-12 chr2 56464952 56465179 + 1 NA Intergenic L1P4a|LINE|L1 -279295 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 122.5-9 chr2 52427046 52427220 + 1 NA Intergenic L1MC4|LINE|L1 56485 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 243.5-16 chr2 31478701 31479131 + 1 NA Intergenic Intergenic -64174 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 122.5 chr1 71746021 71746161 + 1 NA intron (NM_173808, intron 3 of 6) MER39|LTR|ERV1 90921 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 299.5-14 chr16 86029758 86030092 + 1 NA Intergenic Intergenic 111578 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 329.5-17 chr3 108643292 108643809 + 1 NA intron (NM_014648, intron 13 of 32) MER5A1|DNA|hAT-Charlie 53828 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 199.5 chr1 14784573 14784902 + 1 NA intron (NM_201628, intron 1 of 14) AluJb|SINE|Alu -139392 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 123.5-7 chr18 57694346 57694503 + 1 NA intron (NM_005603, intron 11 of 27) intron (NM_005603, intron 11 of 27) 64093 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 163.5-3 chr11 33118915 33119078 + 1 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 42484 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 312.5-29 chr6 129243023 129243391 + 1 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 360066 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 176.5-23 chr5 946788 946991 + 1 NA Intergenic Intergenic 50451 NR_104614 100506688 Hs.532063 NM_001242737 ENSG00000215246 LOC100506688 - uncharacterized LOC100506688 ncRNA 122.5-2 chr10 74178658 74178882 + 1 NA intron (NM_001369124, intron 1 of 9) intron (NM_001369124, intron 1 of 9) 2007 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 185.5-29 chr7 6235133 6235361 + 1 NA intron (NM_001367581, intron 1 of 13) AluSz|SINE|Alu 37377 NM_001367580 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 379.5-25 chr8 128939926 128940538 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 25769 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 211.5 chr1 22318768 22319032 + 1 NA Intergenic Intergenic 52661 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 232.5-5 chr10 13331291 13331637 + 1 NA intron (NM_001195602, intron 4 of 7) AluSx1|SINE|Alu 16829 NM_012247 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 229.5-36 chr5 168612529 168612985 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger -33389 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 152.5-27 chr8 79252563 79252857 + 1 NA Intergenic L2c|LINE|L2 -79478 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 117.5-22 chr9 25741370 25741513 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -38615 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 269.5-6 chr11 23981745 23982070 + 1 NA Intergenic Intergenic -515146 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 230.5-43 chr6 53049196 53049535 + 1 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 12437 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 228.5-23 chr3 98735975 98736325 + 1 NA intron (NM_001323366, intron 1 of 11) intron (NM_001323366, intron 1 of 11) 2694 NM_001323366 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 257.5-32 chr5 18356259 18356566 + 1 NA Intergenic MLT2B1|LTR|ERVL 549138 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 175.5-2 chr10 109108833 109109067 + 1 NA Intergenic Intergenic 814296 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 318.5-4 chr11 84483243 84483855 + 1 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -166210 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 270.5-20 chr3 48305315 48305719 + 1 NA Intergenic AluJr4|SINE|Alu -3832 NM_001308431 10201 Hs.465558 NM_005793 ENSG00000172113 NME6 IPIA-ALPHA|NDK 6|NM23-H6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding 305.5-32 chr6 74698314 74698752 + 1 NA Intergenic Intergenic 430249 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 184.5-6 chr14 47490130 47490435 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -147036 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 159.5-18 chr2 240769327 240769574 + 1 NA intron (NM_004321, intron 15 of 46) intron (NM_004321, intron 15 of 46) 50769 NM_001330290 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 275.5-19 chr2 201729452 201729803 + 1 NA intron (NM_020919, intron 13 of 33) AluY|SINE|Alu -30983 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 396.5-32 chr8 88899292 88899847 + 1 NA Intergenic LTR13|LTR|ERVK -572086 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 121.5-5 chr16 82852101 82852270 + 1 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 78866 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 170.5-19 chr4 57431510 57431744 + 1 NA intron (NR_125907, intron 3 of 5) intron (NR_125907, intron 3 of 5) 5755 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 280.5-28 chr5 112949026 112949533 + 1 NA Intergenic Intergenic -27052 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 159.5-31 chr8 90983277 90983489 + 1 NA intron (NM_001190972, intron 1 of 5) intron (NM_001190972, intron 1 of 5) 1694 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 323.5-25 chr4 69673719 69674314 + 1 NA Intergenic L1MA1|LINE|L1 -20769 NM_001252275 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 213.5-7 chr10 100790912 100791189 + 1 NA intron (NM_003990, intron 6 of 10) intron (NM_003990, intron 6 of 10) 45339 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 341.5-3 chr10 70597113 70597702 + 1 NA TTS (NM_005041) TTS (NM_005041) 5334 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 122.5-13 chr2 181322834 181322992 + 1 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -17261 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 164.5-23 chr5 119590141 119590349 + 1 NA Intergenic Intergenic -39313 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 244.5-4 chr1 223133658 223134136 + 1 NA intron (NM_003268, intron 4 of 5) intron (NM_003268, intron 4 of 5) 9351 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 213.5-5 chr10 56690450 56690733 + 1 NA Intergenic L1MA9|LINE|L1 -329318 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 242.5-32 chr5 56574536 56574922 + 1 NA intron (NR_161255, intron 1 of 5) L1ME3|LINE|L1 31527 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 282.5-33 chr9 31645912 31646348 + 1 NA Intergenic Intergenic -264640 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 117.5 chr1 11310881 11311025 + 1 NA Intergenic Intergenic 37755 NM_001330349 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 204.5-3 chr1 96919372 96919577 + 1 NA Intergenic AluY|SINE|Alu -176449 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 194.5-34 chr9 28198330 28198671 + 1 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 520805 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 265.5-42 chr8 51892945 51893272 + 1 NA intron (NM_001363193, intron 1 of 5) intron (NM_001363193, intron 1 of 5) 5928 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 304.5-37 chr6 38145947 38146342 + 1 NA intron (NM_021943, intron 5 of 5) 7SK|RNA|RNA 326417 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 366.5-21 chr2 195355146 195355833 + 1 NA Intergenic AluJb|SINE|Alu -301469 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 193.5-26 chr5 44217202 44217550 + 1 NA Intergenic Intergenic -171356 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 168.5-5 chr10 73446615 73446915 + 1 NA intron (NM_001142353, intron 10 of 13) intron (NM_001142353, intron 10 of 13) -13204 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 232.5-25 chr5 7989006 7989288 + 1 NA Intergenic Intergenic 119999 NM_001364442 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 117.5-18 chr6 56214170 56214381 + 1 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 33305 NR_134850 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 233.5-7 chr14 37927901 37928326 + 1 NA Intergenic MamRep1894|DNA|hAT -25989 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 326.5-2 chr1 247897880 247898457 + 1 NA Intergenic Intergenic 2581 NM_001001957 343171 Hs.269151 NM_001001957 ENSG00000238243 OR2W3 OR2W3P|OR2W8P|OST718 olfactory receptor family 2 subfamily W member 3 protein-coding 251.5-16 chr2 136698363 136698809 + 1 NA Intergenic AluY|SINE|Alu -66959 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 173.5-27 chr8 137797544 137797846 + 1 NA Intergenic Intergenic 285850 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 247.5-35 chr8 129159579 129159898 + 1 NA Intergenic Intergenic 81502 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 167.5-4 chr11 121740902 121741156 + 1 NA Intergenic MIR|SINE|MIR 288715 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 122.5-11 chr2 79636724 79636964 + 1 NA intron (NM_001282598, intron 1 of 17) L1ME4a|LINE|L1 12515 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 208.5-5 chr14 101072458 101072749 + 1 NA non-coding (NR_047664, exon 2 of 2) non-coding (NR_047664, exon 2 of 2) 2692 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 ncRNA 355.5-19 chr7 8454224 8454758 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 20882 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 283.5-19 chr20 34338640 34339019 + 1 NA Intergenic AluSx1|SINE|Alu -24444 NM_001324197 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 346.5-29 chr7 50622147 50622565 + 1 NA intron (NM_001350816, intron 7 of 17) intron (NM_001350816, intron 7 of 17) -56951 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 216.5-40 chr8 142579867 142580245 + 1 NA Intergenic Intergenic 34423 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 259.5-26 chr3 95420120 95420381 + 1 NA Intergenic Intergenic 262943 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 403.5-8 chr15 72296551 72297348 + 1 NA intron (NM_052840, intron 3 of 12) L1MB2|LINE|L1 9366 NM_001172685 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 227.5-33 chr8 124681410 124681835 + 1 NA intron (NM_001282971, intron 3 of 14) AluSq2|SINE|Alu 46851 NM_001363297 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 165.5-11 chr2 211345959 211346166 + 1 NA Intergenic MamGypLTR1b|LTR|Gypsy 728491 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 126.5 chr10 4205787 4205913 + 1 NA Intergenic Intergenic 38062 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 139.5-12 chr20 31069220 31069393 + 1 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -188358 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 172.5-3 chr11 78898344 78898673 + 1 NA intron (NM_001098816, intron 7 of 33) intron (NM_001098816, intron 7 of 33) -323644 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 188.5-27 chr8 142775958 142776231 + 1 NA 5' UTR (NM_177476, exon 2 of 4) 5' UTR (NM_177476, exon 2 of 4) 437 NM_001356370 66004 Hs.158665 NM_177457 ENSG00000180155 LYNX1 - Ly6/neurotoxin 1 protein-coding 151.5-23 chr7 5569335 5569611 + 1 NA Intergenic Intergenic -23343 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 151.5-3 chr10 55005494 55005721 + 1 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -204316 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 286.5-9 chr14 67405810 67406259 + 1 NA intron (NM_016445, intron 1 of 8) AluSx1|SINE|Alu 6131 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 132.5-2 chr10 49273326 49273562 + 1 NA Intergenic Intergenic 25449 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 125.5-12 chr7 139040170 139040307 + 1 NA Intergenic Intergenic 3919 NR_162108 113218503 NR_162108 MIR10399 - microRNA 10399 ncRNA 245.5-11 chr14 67972659 67973119 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 149297 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 139.5-15 chr3 88009818 88010055 + 1 NA Intergenic MER58B|DNA|hAT-Charlie 27360 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 233.5-19 chr3 35571230 35571672 + 1 NA Intergenic Intergenic -68074 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 171.5-9 chr17 78807524 78807813 + 1 NA intron (NM_001321291, intron 13 of 20) intron (NM_001321291, intron 13 of 20) -25326 NM_004762 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 182.5-3 chr1 238795530 238795738 + 1 NA Intergenic AluY|SINE|Alu -309617 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 153.5-3 chr14 48909490 48909694 + 1 NA Intergenic MER67D|LTR|ERV1 676788 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 174.5-14 chr19 28656253 28656434 + 1 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 49655 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 273.5-3 chr12 107652729 107653157 + 1 NA intron (NM_001018072, intron 16 of 16) AluSp|SINE|Alu -32789 NM_001317963 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 287.5-19 chr3 84970200 84970507 + 1 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 11364 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 301.5-14 chr3 117501092 117501670 + 1 NA Intergenic Intergenic 189544 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 192.5-4 chr11 26662922 26663292 + 1 NA 3' UTR (NM_001313726, exon 28 of 28) 3' UTR (NM_001313726, exon 28 of 28) 58953 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 154.5-15 chr22 47238825 47239062 + 1 NA Intergenic Intergenic -106628 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 122.5-8 chr2 1985985 1986136 + 1 NA intron (NM_015025, intron 5 of 24) intron (NM_015025, intron 5 of 24) -241545 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 333.5 chr1 105994949 105995609 + 1 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 32974 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 202.5-32 chr8 81856787 81857185 + 1 NA Intergenic Intergenic -14700 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 126.5-6 chr2 15631382 15631531 + 1 NA TTS (NM_004939) TTS (NM_004939) 39588 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 339.5-3 chr1 183084584 183085124 + 1 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 56416 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 137.5-6 chr11 113558951 113559157 + 1 NA Intergenic MER31B|LTR|ERV1 -83656 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 173.5-19 chr6 39346305 39346606 + 1 NA intron (NM_001289020, intron 19 of 21) MLT1A0|LTR|ERVL-MaLR -23487 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 392.5-26 chr8 84917592 84918024 + 1 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -189430 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 281.5-38 chr8 137968920 137969396 + 1 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 114387 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 176.5-30 chr7 35611130 35611343 + 1 NA Intergenic L2a|LINE|L2 83899 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 296.5-20 chr21 28562886 28563306 + 1 NA Intergenic L1PA16|LINE|L1 23778 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 320.5-34 chr7 135809501 135809821 + 1 NA Intergenic AluSz|SINE|Alu -60848 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 152.5-4 chr1 191990025 191990239 + 1 NA Intergenic L1MA1|LINE|L1 -168330 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 194.5-20 chr4 56379530 56379840 + 1 NA intron (NM_001286669, intron 2 of 13) L2b|LINE|L2 7806 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 338.5-24 chr5 58426786 58427124 + 1 NA Intergenic AluY|SINE|Alu 33131 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 242.5-29 chr5 21005174 21005525 + 1 NA Intergenic Intergenic -389814 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 176.5 chr1 16382816 16383145 + 1 NA intron (NR_073500, intron 1 of 1) AluSx1|SINE|Alu 15738 NR_073501 26099 Hs.252967 NM_001114600 ENSG00000055070 SZRD1 C1orf144 SUZ RNA binding domain containing 1 protein-coding 117.5-10 chr17 65312822 65312999 + 1 NA Intergenic Intergenic -144631 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 206.5-7 chr12 9818151 9818444 + 1 NA intron (NR_159359, intron 1 of 5) intron (NR_159359, intron 1 of 5) -9184 NM_001291823 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 207.5-23 chr3 93715191 93715436 + 1 NA Intergenic ALR/Alpha|Satellite|centr 258768 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 250.5-19 chr2 132494863 132495247 + 1 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 61344 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 169.5-16 chr5 124126501 124126686 + 1 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 311927 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 309.5-27 chr8 126571310 126571922 + 1 NA Intergenic Intergenic -13138 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 168.5-14 chr19 48774562 48774785 + 1 NA Intergenic L1MC4|LINE|L1 19149 NM_019113 26291 Hs.283015 NM_019113 ENSG00000105550 FGF21 - fibroblast growth factor 21 protein-coding 176.5-16 chr22 21771494 21771670 + 1 NA intron (NM_002745, intron 7 of 8) AluJr|SINE|Alu -35788 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 269.5-36 chr4 30420953 30421422 + 1 NA Intergenic L1MB5|LINE|L1 -299182 NM_002589 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 146.5-26 chr3 116433393 116433623 + 1 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 11979 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 503.5-5 chr11 59486319 59486978 + 1 NA Intergenic Intergenic 9218 NM_001004705 390197 Hs.553756 NM_001004705 ENSG00000254466 OR4D10 OR11-251|OR4D10P|OST711 olfactory receptor family 4 subfamily D member 10 protein-coding 255.5-24 chr6 57159034 57159511 + 1 NA intron (NM_015555, intron 12 of 13) intron (NM_015555, intron 12 of 13) 12941 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 162.5-8 chr17 74926799 74927029 + 1 NA intron (NM_178160, intron 3 of 6) AluSz|SINE|Alu 2639 NM_178160 92736 Hs.352515 NM_178160 ENSG00000183034 OTOP2 - otopetrin 2 protein-coding 238.5-19 chr2 81995100 81995528 + 1 NA Intergenic Intergenic -528368 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 132.5-22 chr8 140649214 140649451 + 1 NA Intergenic L1ME2z|LINE|L1 -13699 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 638.5-9 chr6 48453794 48454818 + 1 NA Intergenic L1MA1|LINE|L1 -385617 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 198.5-23 chr6 115687002 115687359 + 1 NA Intergenic Intergenic -43345 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 217.5-22 chr20 50160421 50160740 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -6782 NM_199203 387522 Hs.744839 NM_003349 ENSG00000124208 TMEM189-UBE2V1 CROC-1B|CROC1B|KUA-UEV TMEM189-UBE2V1 readthrough protein-coding 156.5-22 chr5 67307718 67307963 + 1 NA Intergenic Intergenic -111041 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 213.5-30 chr5 157122215 157122537 + 1 NA Intergenic L1M2c|LINE|L1 -13332 NM_032782 84868 Hs.710500 NM_032782 ENSG00000135077 HAVCR2 CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3 hepatitis A virus cellular receptor 2 protein-coding 244.5-38 chr6 129456907 129457269 + 1 NA intron (NM_000426, intron 48 of 64) intron (NM_000426, intron 48 of 64) 253089 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 179.5-7 chr17 80003717 80004004 + 1 NA intron (NM_019020, intron 3 of 11) AluJb|SINE|Alu 32012 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 227.5-23 chr6 154357631 154357990 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1044 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 152.5-22 chr4 56603412 56603668 + 1 NA TTS (NM_001256475) TTS (NM_001256475) 52982 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 243.5-24 chr3 104139999 104140338 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR -616052 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 198.5-19 chr3 149463542 149463845 + 1 NA Intergenic Intergenic -11004 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 264.5-26 chr4 76751427 76751837 + 1 NA intron (NM_020859, intron 6 of 10) L1MB2|LINE|L1 146512 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 313.5-17 chr2 18092694 18093205 + 1 NA Intergenic L2a|LINE|L2 214282 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 257.5-12 chr11 36682447 36682885 + 1 NA Intergenic L2c|LINE|L2 -84387 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 381.5-31 chrX 98125183 98125597 + 1 NA Intergenic L1MB7|LINE|L1 -560855 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 313.5-16 chr19 30448802 30449161 + 1 NA intron (NM_014717, intron 2 of 4) intron (NM_014717, intron 2 of 4) 76597 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 187.5-30 chr8 33423272 33423459 + 1 NA intron (NM_032664, intron 3 of 4) AluJo|SINE|Alu 49781 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 183.5-20 chr21 32349240 32349511 + 1 NA exon (NM_014825, exon 21 of 39) exon (NM_014825, exon 21 of 39) 27947 NR_002996 677846 Hs.712293 NR_002996 ENSG00000200792 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 300.5-26 chr2 229008800 229009252 + 1 NA Intergenic Intergenic 223066 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 120.5-7 chr16 27960191 27960361 + 1 NA intron (NM_001109763, intron 2 of 6) MIR|SINE|MIR -72119 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 122.5-14 chr2 194236800 194237026 + 1 NA Intergenic Intergenic -107356 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 182.5-4 chr12 26961715 26962004 + 1 NA intron (NM_015633, intron 5 of 6) intron (NM_015633, intron 5 of 6) 23389 NM_015633 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 260.5-2 chr10 26670712 26671196 + 1 NA Intergenic AluSx|SINE|Alu -26470 NM_001321978 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 346.5-22 chr4 91804473 91804897 + 1 NA Intergenic L2a|LINE|L2 472617 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 128.5-4 chr1 172106278 172106521 + 1 NA intron (NR_146559, intron 14 of 20) AluSz|SINE|Alu -32409 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 160.5-15 chr3 195365660 195365868 + 1 NA intron (NM_012287, intron 4 of 22) intron (NM_012287, intron 4 of 22) 77256 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 128.5-31 chr8 127516183 127516428 + 1 NA Intergenic L1ME4a|LINE|L1 -34166 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 124.5 chr1 94451500 94451708 + 1 NA intron (NM_002858, intron 1 of 22) L2|LINE|L2 33215 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 184.5-12 chr17 21261842 21262174 + 1 NA Intergenic Intergenic -8598 NM_152914 256302 Hs.654713 NM_152914 ENSG00000274180 NATD1 C17orf103|Gtlf3b N-acetyltransferase domain containing 1 protein-coding 246.5-3 chr1 168851982 168852399 + 1 NA Intergenic L1MEg|LINE|L1 65249 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 288.5-20 chr17 56239813 56240333 + 1 NA intron (NM_001370326, intron 3 of 20) L1ME3Cz|LINE|L1 86598 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 207.5-19 chr2 65098596 65099005 + 1 NA intron (NM_015543, intron 2 of 3) L1MB7|LINE|L1 31306 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 315.5-8 chr12 16598601 16599121 + 1 NA intron (NM_001243613, intron 3 of 5) intron (NM_001243613, intron 3 of 5) 6518 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 557.5-3 chr12 41403003 41403853 + 1 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -34311 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 312.5-28 chr6 68931848 68932430 + 1 NA intron (NM_001704, intron 4 of 31) intron (NM_001704, intron 4 of 31) 296857 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 392.5-28 chr9 74578229 74578862 + 1 NA intron (NM_006914, intron 1 of 9) L1PA15|LINE|L1 -36989 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 202.5-11 chr14 71119621 71119919 + 1 NA Intergenic Intergenic -200706 NM_001354285 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 323.5-20 chr21 30263893 30264419 + 1 NA Intergenic Intergenic 18794 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 192.5-10 chr14 67844916 67845157 + 1 NA intron (NM_133509, intron 4 of 10) L1PA16|LINE|L1 21444 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 226.5-22 chr5 2543044 2543488 + 1 NA Intergenic Intergenic -169325 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 165.5-12 chr20 9398966 9399291 + 1 NA intron (NM_000933, intron 16 of 35) intron (NM_000933, intron 16 of 35) 91328 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 224.5-20 chr22 42851516 42851837 + 1 NA intron (NM_001142293, intron 1 of 14) intron (NM_001142293, intron 1 of 14) 5597 NM_001142293 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 290.5-29 chr8 101144408 101144832 + 1 NA Intergenic Intergenic 61053 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 394.5-7 chr16 3445305 3445892 + 1 NA intron (NM_001083601, intron 1 of 7) intron (NM_001083601, intron 1 of 7) 1918 NM_001083601 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15|NatF|hNaa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 421.5-24 chr6 151804073 151804753 + 1 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -1260 NM_001291241 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 209.5-18 chr2 53328933 53329282 + 1 NA Intergenic Intergenic -438676 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 150.5-5 chr12 21455935 21456178 + 1 NA exon (NM_024854, exon 7 of 12) exon (NM_024854, exon 7 of 12) 18141 NM_001350912 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 170.5-7 chr12 98760113 98760283 + 1 NA intron (NM_001352221, intron 8 of 9) intron (NM_001352221, intron 8 of 9) 114898 NM_181869 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 214.5-31 chr7 100041207 100041584 + 1 NA non-coding (NR_144477, exon 7 of 7) non-coding (NR_144477, exon 7 of 7) -8379 NM_145914 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 201.5-3 chr1 204332926 204333326 + 1 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 26803 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 325.5-26 chr6 39487469 39488012 + 1 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -56350 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 117.5-9 chr15 70494912 70495054 + 1 NA Intergenic Intergenic 10945 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 183.5-19 chr21 22650121 22650444 + 1 NA Intergenic MLT1H2|LTR|ERVL-MaLR -429002 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 146.5-11 chr15 80793403 80793642 + 1 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 14152 NM_001293298 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 230.5-52 chr8 132180553 132180870 + 1 NA intron (NM_001204824, intron 3 of 14) intron (NM_001204824, intron 3 of 14) -75446 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 226.5-20 chr4 126705131 126705401 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -927691 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 145.5-26 chr6 36708811 36709062 + 1 NA intron (NM_001257357, intron 2 of 13) AluSq2|SINE|Alu 11110 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 152.5 chr1 19650213 19650380 + 1 NA intron (NM_001278166, intron 1 of 3) intron (NM_001278166, intron 1 of 3) 2686 NM_001278166 4681 Hs.654502 NM_005380 ENSG00000158747 NBL1 D1S1733E|DAN|DAND1|NB|NO3 NBL1, DAN family BMP antagonist protein-coding 132.5-18 chr6 55718876 55719047 + 1 NA Intergenic Intergenic -139747 NR_109867 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 207.5-42 chr9 115188509 115188816 + 1 NA intron (NR_163556, intron 1 of 7) MSTD|LTR|ERVL-MaLR 46844 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 239.5-26 chr8 138826155 138826599 + 1 NA intron (NM_152888, intron 6 of 64) intron (NM_152888, intron 6 of 64) 87664 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 148.5-27 chr9 23836222 23836429 + 1 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) -10085 NM_001351477 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 260.5-6 chr11 108930301 108930770 + 1 NA intron (NM_004398, intron 17 of 17) L1MC2|LINE|L1 265466 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 230.5-15 chr11 59266526 59266895 + 1 NA Intergenic Intergenic -53783 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 224.5-26 chr5 13473451 13473775 + 1 NA Intergenic Intergenic -440727 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 195.5-34 chr8 144220877 144221122 + 1 NA intron (NM_001288814, intron 12 of 41) MER77|LTR|ERVL 41738 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 170.5-8 chr13 21960490 21960719 + 1 NA Intergenic Intergenic -82444 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 240.5-31 chr8 138029853 138030225 + 1 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 53506 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 149.5-4 chr14 60099043 60099243 + 1 NA intron (NM_022495, intron 1 of 9) intron (NM_022495, intron 1 of 9) 7220 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 254.5-26 chr2 6893821 6894075 + 1 NA intron (NM_080657, intron 5 of 5) intron (NM_080657, intron 5 of 5) 16171 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 262.5-22 chr6 14313075 14313539 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity -27853 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 176.5-25 chr5 101010625 101010954 + 1 NA Intergenic Intergenic -107507 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 233.5-12 chr16 89533044 89533461 + 1 NA intron (NM_001363850, intron 9 of 17) AluY|SINE|Alu 24849 NM_199367 6687 Hs.185597 NM_003119 ENSG00000197912 SPG7 CAR|CMAR|PGN|SPG5C SPG7 matrix AAA peptidase subunit, paraplegin protein-coding 367.5-30 chr6 54631251 54631743 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -215274 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 254.5-21 chr18 52742966 52743331 + 1 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 402951 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 180.5-25 chr9 106619722 106620019 + 1 NA intron (NR_104145, intron 1 of 6) intron (NR_104145, intron 1 of 6) 3812 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 142.5-17 chr7 42407898 42408067 + 1 NA Intergenic Intergenic -170773 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 129.5-20 chr7 29897835 29898032 + 1 NA intron (NM_001080529, intron 7 of 8) intron (NM_001080529, intron 7 of 8) 91379 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 275.5-15 chr18 27187006 27187287 + 1 NA Intergenic Intergenic -1838 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 166.5-4 chr15 67462710 67462991 + 1 NA intron (NR_040051, intron 3 of 5) intron (NR_040051, intron 3 of 5) 58123 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 155.5-13 chr4 55675349 55675582 + 1 NA Intergenic L1PB1|LINE|L1 -38672 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 181.5-27 chr5 120894308 120894537 + 1 NA Intergenic Intergenic 362958 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 169.5-5 chr14 75825623 75825893 + 1 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 156237 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 219.5-16 chr18 75137020 75137386 + 1 NA Intergenic Intergenic 68310 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 147.5-16 chr7 6283317 6283577 + 1 NA Intergenic L1MD2|LINE|L1 -10823 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 267.5-12 chr2 62192788 62193303 + 1 NA Intergenic L2b|LINE|L2 -3070 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 152.5-20 chr19 51982176 51982361 + 1 NA TTS (NR_103847) TTS (NR_103847) 4572 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 302.5-6 chr10 114396806 114397204 + 1 NA intron (NM_001351073, intron 1 of 19) intron (NM_001351073, intron 1 of 19) 7497 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 144.5-14 chr4 12722269 12722530 + 1 NA Intergenic AluSz6|SINE|Alu 498948 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 372.5-20 chr4 61060651 61061320 + 1 NA Intergenic Intergenic -82671 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 194.5-19 chr3 193760509 193760851 + 1 NA Intergenic Intergenic 83329 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 147.5-15 chr6 119485729 119485950 + 1 NA intron (NR_046100, intron 1 of 5) MLT2D|LTR|ERVL 5463 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 237.5-5 chr11 116335274 116335645 + 1 NA Intergenic Intergenic -303963 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 122.5-23 chr9 132386536 132386658 + 1 NA exon (NM_007344, exon 9 of 11) exon (NM_007344, exon 9 of 11) 20243 NR_134525 7270 Hs.54780 NM_007344 ENSG00000125482 TTF1 TTF-1|TTF-I transcription termination factor 1 protein-coding 288.5-15 chr14 66071249 66071661 + 1 NA Intergenic L1ME3G|LINE|L1 -414916 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 429.5-3 chr1 167401123 167401841 + 1 NA exon (NM_002697, exon 13 of 16) exon (NM_002697, exon 13 of 16) 72412 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 286.5-7 chr10 67194374 67194911 + 1 NA intron (NM_001127384, intron 6 of 17) L1MC1|LINE|L1 182376 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 192.5-33 chr9 68871408 68871732 + 1 NA intron (NM_003558, intron 5 of 15) intron (NM_003558, intron 5 of 15) 91505 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 195.5-19 chr20 42287589 42287900 + 1 NA intron (NM_133170, intron 12 of 31) L1MA5A|LINE|L1 -397739 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 246.5-11 chr14 98769495 98769812 + 1 NA Intergenic Intergenic 58040 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 152.5-23 chr5 13697787 13698059 + 1 NA intron (NM_001369, intron 78 of 78) MSTD|LTR|ERVL-MaLR 246557 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 279.5 chr1 114899738 114900198 + 1 NA intron (NM_001282542, intron 16 of 30) MER61-int|LTR|ERV1 45105 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 147.5-17 chr7 28011580 28011728 + 1 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -168803 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 306.5-16 chr17 4547438 4547783 + 1 NA intron (NM_014520, intron 13 of 25) intron (NM_014520, intron 13 of 25) 7774 NM_014520 10514 Hs.22824 NM_014520 ENSG00000132382 MYBBP1A P160|PAP2|Pol5 MYB binding protein 1a protein-coding 148.5-13 chr2 48176059 48176255 + 1 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -138525 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 198.5-14 chr2 98017394 98017684 + 1 NA Intergenic Intergenic -21591 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 189.5-13 chr2 63468077 63468405 + 1 NA intron (NR_148704, intron 7 of 18) LTR16B1|LTR|ERVL -30234 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 189.5 chr1 84170617 84170951 + 1 NA intron (NM_001300915, intron 1 of 11) intron (NM_001300915, intron 1 of 11) 6090 NM_001300915 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 325.5-33 chr8 142462802 142463197 + 1 NA intron (NM_001702, intron 1 of 30) intron (NM_001702, intron 1 of 30) 13350 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 128.5-28 chr8 120267396 120267617 + 1 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 142404 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 242.5-2 chr1 46019261 46019542 + 1 NA intron (NM_001324320, intron 11 of 29) intron (NM_001324320, intron 11 of 29) 111272 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 217.5-5 chr10 74312220 74312525 + 1 NA intron (NM_001369124, intron 3 of 9) L1ME3B|LINE|L1 135609 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 313.5-34 chr5 167097287 167097668 + 1 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 24235 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 135.5-3 chr11 25050631 25050862 + 1 NA intron (NM_001009909, intron 10 of 11) intron (NM_001009909, intron 10 of 11) 553693 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 185.5-2 chr10 19292095 19292280 + 1 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 243386 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 269.5-11 chr12 106904845 106905249 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -50675 NM_001319664 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 247.5-31 chr8 34994512 34994898 + 1 NA Intergenic Intergenic 210784 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 117.5-17 chr4 66665893 66666025 + 1 NA Intergenic Intergenic 389135 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA