PeakID (cmd=annotatePeaks.pl S12_S12_SEACR.relaxed.bed hg38 -annStats S12_S12_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chr9 104770473 104770725 170 - chr9:104770627-104770697 NA NA NA NA NA chr8-2 134738184 134738387 108 - chr8:134738311-134738324 NA NA NA NA NA chr8 111051457 111051651 151 - chr8:111051472-111051580 NA NA NA NA NA chr6 67844186 67844410 155 - chr6:67844186-67844272 NA NA NA NA NA chr6-2 159154888 159155215 177 - chr6:159154990-159155001 NA NA NA NA NA chr5 27653279 27653465 111 - chr5:27653375-27653418 NA NA NA NA NA chr5-3 155575765 155576091 128 - chr5:155575818-155575913 NA NA NA NA NA chr5-2 114680280 114680430 135 - chr5:114680280-114680400 NA NA NA NA NA chr4 53155963 53156287 159 - chr4:53156048-53156061 NA NA NA NA NA chr3-2 111939365 111939539 138 - chr3:111939421-111939518 NA NA NA NA NA chr3 101458079 101458251 124 - chr3:101458122-101458194 NA NA NA NA NA chr2-4 224120979 224121210 142 - chr2:224121078-224121146 NA NA NA NA NA chr2-3 196864546 196864821 149 - chr2:196864577-196864705 NA NA NA NA NA chr2-2 189558766 189559069 184 - chr2:189558865-189558935 NA NA NA NA NA chr2 132825552 132825802 216 - chr2:132825614-132825789 NA NA NA NA NA chr20-2 44983754 44983963 149 - chr20:44983872-44983961 NA NA NA NA NA chr20 22107662 22107919 157 - chr20:22107753-22107810 NA NA NA NA NA chr1-2 98095030 98095356 200 - chr1:98095159-98095338 NA NA NA NA NA chr1 85420404 85420717 219 - chr1:85420451-85420576 NA NA NA NA NA chr18 12702758 12702957 180 - chr18:12702780-12702943 NA NA NA NA NA chr17-2 75724409 75724873 248 - chr17:75724548-75724549 NA NA NA NA NA chr17 56498354 56498574 193 - chr17:56498379-56498545 NA NA NA NA NA chr14-3 81565849 81566026 105 - chr14:81565993-81565994 NA NA NA NA NA chr14-2 68157445 68157701 128 - chr14:68157555-68157563 NA NA NA NA NA chr14 68047241 68047804 198 - chr14:68047556-68047586 NA NA NA NA NA chr13 82135475 82135861 193 - chr13:82135628-82135652 NA NA NA NA NA chr11 88789481 88789752 163 - chr11:88789644-88789659 NA NA NA NA NA chr10-4 81828056 81828296 145 - chr10:81828063-81828113 NA NA NA NA NA chr10-3 61085287 61085649 232 - chr10:61085358-61085460 NA NA NA NA NA chr10-2 13636256 13636516 194 - chr10:13636300-13636428 NA NA NA NA NA chr10 10968106 10968356 170 - chr10:10968202-10968288 NA NA NA NA NA 280.214 chrM 11214 11410 + 2.71429 NA Intergenic Intergenic -3798 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 293.642 chr16 71213928 71214431 + 1.78571 NA intron (NM_001198543, intron 1 of 18) L1ME3B|LINE|L1 16543 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 247.357 chr16 1309109 1309411 + 1.5 NA promoter-TSS (NM_003345) promoter-TSS (NM_003345) 108 NM_194260 7329 Hs.302903 NM_003345 ENSG00000103275 UBE2I C358B7.1|P18|UBC9 ubiquitin conjugating enzyme E2 I protein-coding 246.786 chr2 78801722 78802049 + 1.5 NA Intergenic AluJb|SINE|Alu -223817 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 273.643 chr12 4465716 4465936 + 1.5 NA Intergenic L1MA6|LINE|L1 -20212 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 189.857-2 chr4 99041320 99041539 + 1.42857 NA intron (NM_015143, intron 6 of 10) intron (NM_015143, intron 6 of 10) 44042 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 253.429 chr5 82196939 82197266 + 1.42857 NA intron (NM_031482, intron 5 of 7) L1MB7|LINE|L1 81252 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 167.857-3 chr9 18556780 18556991 + 1.42857 NA intron (NM_052866, intron 3 of 12) intron (NM_052866, intron 3 of 12) -16421 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 296.428 chr3 158807487 158807856 + 1.42857 NA intron (NM_022736, intron 5 of 15) intron (NM_022736, intron 5 of 15) 5617 NM_022736 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 287.143 chr5 124696239 124696590 + 1.42857 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 48698 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 206.5 chr22 26015815 26015993 + 1.42857 NA intron (NM_001318245, intron 42 of 43) L2c|LINE|L2 -153558 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 183.143-2 chr11 127249062 127249253 + 1.35714 NA Intergenic MIR3|SINE|MIR -21913 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 254.071 chr13 27360561 27360795 + 1.35714 NA Intergenic L2a|LINE|L2 -63941 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 115.857-5 chr2 139402516 139402616 + 1.35714 NA Intergenic Intergenic 505242 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 160.857 chr2 194038690 194038834 + 1.35714 NA Intergenic L1MC1|LINE|L1 -305507 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 174.357-2 chr5 54343903 54344090 + 1.35714 NA intron (NR_126379, intron 1 of 4) intron (NR_126379, intron 1 of 4) 23052 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 129.143-7 chr4 62619229 62619395 + 1.35714 NA Intergenic Intergenic -457547 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 247.714 chr14 50122683 50123017 + 1.35714 NA intron (NM_006939, intron 21 of 22) L1M5|LINE|L1 -6278 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 209 chr10 16391255 16391462 + 1.35714 NA Intergenic L3|LINE|CR1 -45585 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 170.714 chr1 104479952 104480142 + 1.35714 NA Intergenic L1MC4a|LINE|L1 407024 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 327.643 chr20 59934778 59935187 + 1.35714 NA intron (NM_001190826, intron 1 of 4) intron (NM_001190826, intron 1 of 4) 1203 NM_001190826 63939 Hs.54973 NM_022106 ENSG00000196227 FAM217B C20orf177|dJ551D2.5 family with sequence similarity 217 member B protein-coding 157.714-3 chr4 33296746 33296916 + 1.35714 NA Intergenic Intergenic 743062 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 353.142 chr2 66041998 66042403 + 1.28571 NA Intergenic Intergenic 316128 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 204.857 chr10 32753254 32753544 + 1.28571 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 148073 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 161-2 chr16 50400790 50400924 + 1.28571 NA Intergenic Intergenic -5724 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 232.071 chr3 12733971 12734238 + 1.28571 NA 3' UTR (NM_001284406, exon 12 of 12) 3' UTR (NM_001284406, exon 12 of 12) 25155 NM_001284407 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 235.285 chr9 119210254 119210587 + 1.28571 NA intron (NM_014618, intron 6 of 7) MIR|SINE|MIR 159015 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 138.785 chr2 79259480 79259600 + 1.28571 NA Intergenic Intergenic -99787 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 263.571 chr18 40155579 40155985 + 1.28571 NA Intergenic AluJb|SINE|Alu 89496 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 194.857 chr10 82288508 82288695 + 1.28571 NA intron (NM_001370082, intron 3 of 10) L2a|LINE|L2 -55681 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 103.928-2 chr7 3425547 3425685 + 1.28571 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 124364 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 138.071-3 chr5 105809022 105809154 + 1.28571 NA Intergenic Tigger19a|DNA|TcMar-Tigger 709614 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 179.715 chr4 23287875 23288290 + 1.28571 NA Intergenic Tigger2|DNA|TcMar-Tigger 573993 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 152.071-3 chr20 62931195 62931399 + 1.28571 NA intron (NM_022105, intron 1 of 5) intron (NM_022105, intron 1 of 5) -4746 NM_080796 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 113.5-2 chr19 27933215 27933397 + 1.28571 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -139366 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 164.785 chr2 219158969 219159223 + 1.28571 NA intron (NM_024782, intron 1 of 7) intron (NM_024782, intron 1 of 7) 1769 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 133.714-3 chr12 100272172 100272291 + 1.28571 NA intron (NM_017988, intron 1 of 17) intron (NM_017988, intron 1 of 17) 4847 NM_001330253 55681 Hs.506481 NM_017988 ENSG00000136021 SCYL2 CVAK104 SCY1 like pseudokinase 2 protein-coding 161.142 chr20 22834251 22834402 + 1.28571 NA Intergenic Intergenic -148982 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 163.285 chr8 92289939 92290134 + 1.28571 NA Intergenic Intergenic -186651 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 225.428 chr22 40228910 40229182 + 1.28571 NA intron (NM_015088, intron 1 of 20) intron (NM_015088, intron 1 of 20) 51121 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 245.571-3 chr4 64885270 64885581 + 1.28571 NA Intergenic Intergenic 119075 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 247.714-2 chr4 109068796 109069052 + 1.28571 NA intron (NM_198721, intron 3 of 36) L2a|LINE|L2 233734 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 135.5 chr10 33098919 33099055 + 1.28571 NA intron (NR_160030, intron 1 of 2) L1ME1|LINE|L1 17820 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 165.929-2 chr7 53822243 53822531 + 1.21429 NA Intergenic Intergenic -10456 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 276.572 chr8 110239785 110240306 + 1.21429 NA Intergenic Intergenic -264274 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 240.358 chr22 36620843 36621155 + 1.21429 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 81859 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 136.429-3 chr14 67460974 67461193 + 1.21429 NA Intergenic Intergenic -19153 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 261.929-2 chr3 57333741 57334044 + 1.21429 NA intron (NM_001366028, intron 62 of 73) L1MC1|LINE|L1 -41207 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 236.929 chr14 52203224 52204132 + 1.21429 NA Intergenic Intergenic -64020 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 165.072 chr7 9127825 9127991 + 1.21429 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -506362 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 195.5 chr4 147481393 147481665 + 1.21429 NA intron (NR_148963, intron 1 of 6) CpG 432 NR_045958 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 130.857 chr14 87893934 87894156 + 1.21429 NA Intergenic Intergenic 99137 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 161.643 chr5 13269100 13269413 + 1.21429 NA Intergenic Intergenic -236370 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 212.286-2 chr2 14469776 14470045 + 1.21429 NA Intergenic L1MA8|LINE|L1 -68952 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 247.429 chr8 91301431 91301784 + 1.21429 NA intron (NM_134266, intron 4 of 18) L1M3|LINE|L1 52288 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 112.643-6 chr7 141197173 141197310 + 1.21429 NA intron (NM_001195278, intron 1 of 3) MIR|SINE|MIR 123177 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 206.714-2 chrX 103043878 103044143 + 1.21429 NA Intergenic L1MCa|LINE|L1 20161 NM_018476 55859 Hs.334370 NM_018476 ENSG00000133169 BEX1 BEX2|HBEX2|HGR74-h brain expressed X-linked 1 protein-coding 242.643 chr5 43800518 43800856 + 1.21429 NA Intergenic Intergenic -197457 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 162.5 chr8 108314593 108314819 + 1.21429 NA Intergenic MER21A|LTR|ERVL -65989 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 177.715 chr12 1556609 1556824 + 1.21429 NA Intergenic L1MA7|LINE|L1 -24524 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 201.143 chr11 101192009 101192280 + 1.21429 NA Intergenic Intergenic -62331 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 207.501 chr3 102639352 102639538 + 1.21429 NA Intergenic L2a|LINE|L2 204430 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 176.072 chr16 10725283 10725475 + 1.21429 NA Intergenic Intergenic -18407 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 118.857-5 chr7 39937290 39937406 + 1.21429 NA Intergenic Intergenic 12071 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 129 chr12 80816008 80816140 + 1.21429 NA intron (NM_004664, intron 4 of 5) intron (NM_004664, intron 4 of 5) 16555 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 155.143-2 chr2 76150822 76151041 + 1.21429 NA Intergenic Intergenic -440016 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 144.715 chr1 160309237 160309430 + 1.21429 NA intron (NM_001098398, intron 12 of 32) intron (NM_001098398, intron 12 of 32) -7932 NR_002190 474338 Hs.621179 NR_002190 SUMO1P3 - SUMO1 pseudogene 3 pseudo 324.858 chr7 107927166 107927501 + 1.21429 NA intron (NM_002291, intron 31 of 33) L2|LINE|L2 36150 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 150-4 chr20 58666685 58667036 + 1.21429 NA intron (NM_001001433, intron 2 of 8) intron (NM_001001433, intron 2 of 8) 15577 NM_001204868 8675 Hs.307913 NM_003763 ENSG00000124222 STX16 SYN16 syntaxin 16 protein-coding 234.715 chr12 22681960 22682272 + 1.21429 NA intron (NM_018638, intron 6 of 7) Charlie1a|DNA|hAT-Charlie 56945 NM_001039481 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 201.857-2 chr2 199390817 199391176 + 1.21429 NA intron (NM_001172509, intron 3 of 10) intron (NM_001172509, intron 3 of 10) 66943 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 230.214 chr5 9849469 9849869 + 1.21429 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -4708 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 139.572-2 chr5 13295072 13295233 + 1.21429 NA Intergenic Intergenic -262266 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 213.143-2 chr9 86121134 86121472 + 1.21429 NA Intergenic Intergenic -6237 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 260.214 chr18 62057871 62058376 + 1.21429 NA intron (NM_176787, intron 30 of 30) LTR62|LTR|ERVL 128933 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 170.643 chr10 27641516 27641722 + 1.21429 NA Intergenic L1M4c|LINE|L1 -102996 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 209.429 chr7 109437695 109437943 + 1.21429 NA Intergenic Intergenic 522394 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 237.286 chr4 73297509 73297915 + 1.14286 NA Intergenic L1MA4|LINE|L1 -38914 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 149.143-4 chr17 75179844 75180010 + 1.14286 NA intron (NM_006937, intron 2 of 3) AluSz6|SINE|Alu 3032 NM_006937 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin like modifier 2 protein-coding 126.714-5 chr4 112895850 112895994 + 1.14286 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 34935 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 192.857 chr2 108797122 108797464 + 1.14286 NA intron (NM_144978, intron 5 of 14) L2|LINE|L2 10522 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 140.572-3 chr7 47093359 47093543 + 1.14286 NA Intergenic Intergenic 371352 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 280.572 chr11 114574565 114574916 + 1.14286 NA intron (NM_017678, intron 5 of 5) L1PB1|LINE|L1 -14859 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 175.286-2 chr2 61206918 61207293 + 1.14286 NA intron (NM_014709, intron 70 of 79) intron (NM_014709, intron 70 of 79) 29687 NR_152216 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 147-4 chr2 50287060 50287227 + 1.14286 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 60611 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 220.429 chr1 55100519 55100809 + 1.14286 NA intron (NM_015306, intron 44 of 67) intron (NM_015306, intron 44 of 67) 60442 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 163.857-4 chr8 103352636 103352839 + 1.14286 NA Intergenic L2b|LINE|L2 -18801 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 256.572 chrX 57450564 57451214 + 1.14286 NA intron (NM_001353841, intron 9 of 9) intron (NM_001353841, intron 9 of 9) -140947 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 126.857-9 chr2 51820852 51821161 + 1.14286 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -549642 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 143.429-2 chr10 22866387 22866559 + 1.14286 NA Intergenic Intergenic -61551 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 223.857 chr14 77080849 77081131 + 1.14286 NA Intergenic AluSz6|SINE|Alu -4799 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 150 chr1 113484068 113484387 + 1.14286 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 93712 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 200.572 chr13 64846155 64846471 + 1.14286 NA Intergenic Intergenic -770302 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 184-2 chr12 61866658 61866903 + 1.14286 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 326059 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 148.286-5 chr4 99250781 99251054 + 1.14286 NA intron (NR_037884, intron 4 of 9) L1MA2|LINE|L1 -31671 NR_132990 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 178.715 chr18 1720089 1720293 + 1.14286 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -360562 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 235.429 chr1 93568708 93569072 + 1.14286 NA intron (NM_001308251, intron 5 of 7) AluJb|SINE|Alu 16272 NM_001308251 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 172.571-2 chrX 110923373 110923656 + 1.14286 NA Intergenic Intergenic -20727 NM_001128166 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 134.286-5 chr8 130637673 130637882 + 1.14286 NA Intergenic Intergenic -194103 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 100.429-11 chr9 18274540 18274634 + 1.14286 NA Intergenic Intergenic -199566 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 203.214 chrX 70050952 70051207 + 1.14286 NA Intergenic L1ME2z|LINE|L1 -1141 NM_001002254 158835 Hs.661507 NM_001002254 ENSG00000147160 AWAT2 ARAT|DC4|DGAT2L4|MFAT|WS acyl-CoA wax alcohol acyltransferase 2 protein-coding 167.143-5 chr7 7341518 7341755 + 1.14286 NA Intergenic L1MEg|LINE|L1 86482 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 237.357-2 chr8 55861580 55861954 + 1.14286 NA Intergenic MLT1A0|LTR|ERVL-MaLR -18068 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 166.072 chr5 144968880 144969271 + 1.14286 NA Intergenic L1M3de|LINE|L1 763684 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 299.286 chr10 17643552 17644141 + 1.14286 NA promoter-TSS (NR_110370) promoter-TSS (NR_110370) 72 NR_110370 102723166 Hs.547311 NR_110370 ENSG00000260589 STAM-AS1 locus3182 STAM antisense RNA 1 (head to head) ncRNA 126.143-7 chr9 26993202 26993393 + 1.14286 NA 3' UTR (NM_022901, exon 5 of 5) 3' UTR (NM_022901, exon 5 of 5) 12375 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 221.858 chr10 20362954 20363207 + 1.14286 NA Intergenic Intergenic -188890 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 189.429 chr10 110368965 110369160 + 1.14286 NA Intergenic Intergenic -64142 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 226.857 chr8 117808127 117808425 + 1.14286 NA intron (NM_000127, intron 8 of 10) intron (NM_000127, intron 8 of 10) 112637 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 195.143-2 chr8 82909873 82910289 + 1.14286 NA Intergenic Intergenic -2023 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 138.071-5 chr8 121808607 121808818 + 1.14286 NA Intergenic Tigger12|DNA|TcMar-Tigger -167272 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 210.786-2 chr5 5422314 5422614 + 1.14286 NA promoter-TSS (NM_015325) promoter-TSS (NM_015325) -213 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 134.571-3 chr11 125969518 125969716 + 1.14286 NA intron (NM_016952, intron 18 of 19) intron (NM_016952, intron 18 of 19) 23561 NM_001365077 338667 Hs.730137 NM_001365077 VSIG10L2 - V-set and immunoglobulin domain containing 10 like 2 protein-coding 119.215 chr18 10071473 10071589 + 1.14286 NA Intergenic MLT1E2|LTR|ERVL-MaLR 157515 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 139.5-2 chr11 90556790 90557051 + 1.14286 NA intron (NR_104190, intron 2 of 6) L1MEc|LINE|L1 -1063 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 219.357 chr9 115832329 115832723 + 1.14286 NA Intergenic Intergenic -88287 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 157.143-2 chr14 46835187 46835361 + 1.14286 NA Intergenic Intergenic -183493 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 157.286-6 chr8 124114634 124114867 + 1.14286 NA intron (NM_001039112, intron 39 of 40) (ATAT)n|Simple_repeat|Simple_repeat 56772 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 164.143-2 chr4 133721596 133721758 + 1.14286 NA Intergenic Intergenic 480112 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 276.5 chr5 106648924 106649237 + 1.14286 NA Intergenic Intergenic 361934 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 259.715 chr1 242570012 242570304 + 1.14286 NA Intergenic Intergenic -45461 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 186.072 chr1 150689215 150689414 + 1.14286 NA intron (NM_018178, intron 2 of 4) intron (NM_018178, intron 2 of 4) 7840 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 245.5-3 chr2 27929999 27930334 + 1.14286 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -39052 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 171.072 chr10 93687832 93688094 + 1.14286 NA intron (NR_144635, intron 6 of 12) MIRb|SINE|MIR 14609 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 366.858 chr5 41050086 41050559 + 1.14286 NA intron (NM_173489, intron 13 of 41) intron (NM_173489, intron 13 of 41) 21020 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 156.286-2 chr1 201918967 201919167 + 1.14286 NA intron (NM_012134, intron 1 of 2) AluJr4|SINE|Alu 27481 NM_012134 25802 Hs.519075 NM_012134 ENSG00000163431 LMOD1 1D|64kD|D1|SM-LMOD|SMLMOD leiomodin 1 protein-coding 125.5-4 chr9 6244692 6244874 + 1.14286 NA intron (NM_001199641, intron 2 of 4) intron (NM_001199641, intron 2 of 4) -3688 NM_001353802 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 238.429 chr9 132152190 132152493 + 1.14286 NA Intergenic Intergenic -9717 NM_032536 84628 Hs.163642 NM_032536 ENSG00000196358 NTNG2 LHLL9381|Lmnt2|NTNG1|bA479K20.1 netrin G2 protein-coding 106.571-3 chr4 22383246 22383461 + 1.14286 NA Intergenic MER4A1_|LTR|ERV1 -43687 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 134.857-2 chr13 63252375 63252603 + 1.14286 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 75605 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 305.501 chr3 159138747 159139054 + 1.14286 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 69581 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 180.143 chr11 24294366 24294631 + 1.14286 NA Intergenic Intergenic -202555 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 153.715 chr2 110128541 110128690 + 1.14286 NA intron (NM_207181, intron 18 of 19) intron (NM_207181, intron 18 of 19) -12049 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 176.286-2 chr6 95671993 95672219 + 1.14286 NA Intergenic Intergenic 94571 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 200.143-2 chr16 62204541 62204867 + 1.14286 NA Intergenic Intergenic -168266 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 143.429 chr1 51757975 51758538 + 1.14286 NA intron (NM_001350210, intron 7 of 21) LTR54B|LTR|ERV1 28406 NM_148904 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 125.571-9 chr3 154673234 154673444 + 1.14286 NA Intergenic L1MEg|LINE|L1 -243149 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 211.143 chr4 97533460 97533695 + 1.14286 NA Intergenic L1ME2|LINE|L1 166651 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 245.714-2 chr5 30097974 30098311 + 1.14286 NA Intergenic Intergenic 217582 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 195.929 chr12 59335833 59336125 + 1.14286 NA Intergenic GA-rich|Low_complexity|Low_complexity -260050 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 259.286 chr12 1849886 1850222 + 1.14286 NA intron (NM_172364, intron 23 of 37).2 L1MC5|LINE|L1 29489 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 192.072 chr6 39271483 39271729 + 1.14286 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -42131 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 185.072 chr8 140675890 140676118 + 1.14286 NA intron (NM_001352743, intron 27 of 32) L1PB4|LINE|L1 -40371 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 126.572-2 chr2 99461985 99462123 + 1.14286 NA intron (NM_001321455, intron 3 of 23) HAL1|LINE|L1 27963 NM_001321460 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 126.572 chr15 63177093 63177304 + 1.14286 NA Intergenic Intergenic -12408 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 161.929 chr10 108267124 108267328 + 1.14286 NA Intergenic L1MA1|LINE|L1 -197933 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 138.857-2 chr11 108340151 108340303 + 1.14286 NA intron (NM_001351834, intron 57 of 63) L1MC5|LINE|L1 116698 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 132.286-6 chr3 33192389 33192579 + 1.14286 NA intron (NM_015551, intron 3 of 4) L1ME4a|LINE|L1 26326 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 251.286 chr8 129470278 129470581 + 1.14286 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 13713 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 254.429 chr10 70996743 70997217 + 1.14286 NA Intergenic Intergenic 57927 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 120.143-10 chr4 33821556 33821703 + 1.14286 NA Intergenic L1MB3|LINE|L1 218264 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 175.286-3 chr2 235902040 235902300 + 1.14286 NA intron (NM_001037131, intron 10 of 17) Charlie1a|DNA|hAT-Charlie 266216 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 320.357 chr21 8994990 8995533 + 1.14286 NA Intergenic Intergenic 7644 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 275.429 chr14 57903934 57904243 + 1.14286 NA Intergenic Intergenic -37996 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 153.071-3 chr3 174008197 174008583 + 1.14286 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -87594 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 174.286 chr21 29384145 29384438 + 1.14286 NA Intergenic L1MC5a|LINE|L1 11790 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 123.857-5 chr7 51966189 51966334 + 1.14286 NA Intergenic Intergenic -573005 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 191-2 chr7 6050506 6050733 + 1.14286 NA intron (NM_001134335, intron 2 of 14) AluY|SINE|Alu 8556 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 203.929 chr5 9329859 9330078 + 1.07143 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -181365 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 200.714 chr5 148578608 148578911 + 1.07143 NA intron (NM_001040172, intron 1 of 5) MIR|SINE|MIR 58302 NM_001040169 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 206.714 chr16 71806799 71807095 + 1.07143 NA intron (NM_001128, intron 1 of 22) intron (NM_001128, intron 1 of 22) 1887 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 173.786-3 chr2 98179120 98179284 + 1.07143 NA intron (NM_001345864, intron 2 of 21) intron (NM_001345864, intron 2 of 21) 29669 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 118.929-6 chr6 51118020 51118179 + 1.07143 NA Intergenic MIR|SINE|MIR 299228 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 189 chr11 81041191 81041393 + 1.07143 NA Intergenic Intergenic -278489 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 222.286-2 chr2 106738696 106739008 + 1.07143 NA Intergenic L1MB5|LINE|L1 147176 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 244.286 chr6 117382421 117382733 + 1.07143 NA intron (NM_002944, intron 16 of 42) intron (NM_002944, intron 16 of 42) 43278 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 127.786 chr1 66711857 66712098 + 1.07143 NA intron (NM_001350218, intron 16 of 22) MIRc|SINE|MIR -40482 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 161.072 chr15 57060358 57060670 + 1.07143 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 141069 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 178.286-4 chr6 34841331 34841497 + 1.07143 NA intron (NM_017754, intron 8 of 20) MER3|DNA|hAT-Charlie 46628 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 131.072 chr2 133365649 133365778 + 1.07143 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 99518 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 262.143 chr4 108425194 108425490 + 1.07143 NA Intergenic L1MC3|LINE|L1 -131891 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 185.572 chr17 55638546 55638951 + 1.07143 NA Intergenic Intergenic 84116 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 178.072 chr1 173052493 173052671 + 1.07143 NA Intergenic Intergenic -1619 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 148.857 chr1 222462261 222462522 + 1.07143 NA Intergenic Intergenic 85713 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 120.857-3 chr19 31453270 31453509 + 1.07143 NA Intergenic Intergenic -103953 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 207.857 chr1 91020941 91021306 + 1.07143 NA intron (NM_201269, intron 1 of 5) intron (NM_201269, intron 1 of 5) 385 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 150.714-4 chr20 55128089 55128243 + 1.07143 NA Intergenic L1MEb|LINE|L1 -294877 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 232.143 chr15 63985204 63985591 + 1.07143 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 57123 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 229.214 chr20 53998806 53999192 + 1.07143 NA intron (NM_001366297, intron 4 of 8) MIRb|SINE|MIR 60021 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 196.786-2 chr5 40758201 40758406 + 1.07143 NA Intergenic Intergenic -2342 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 222.143 chr5 54624770 54624999 + 1.07143 NA Intergenic Intergenic 78440 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 274.714 chr5 64972149 64972708 + 1.07143 NA intron (NM_001297644, intron 12 of 12) intron (NM_001297644, intron 12 of 12) 203498 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 205.715 chr9 74139090 74139345 + 1.07143 NA Intergenic MLT1F|LTR|ERVL-MaLR -232314 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 205.643 chr9 77365138 77365396 + 1.07143 NA intron (NM_001018038, intron 59 of 68) L3|LINE|CR1 -82382 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 244.929 chr20 31054689 31055351 + 1.07143 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202644 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 231.5 chr16 75818453 75818804 + 1.07143 NA Intergenic Intergenic -92138 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 140.072 chr8 79094446 79094672 + 1.07143 NA Intergenic L1ME1|LINE|L1 -237629 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 171.214-3 chr14 87729230 87729466 + 1.07143 NA Intergenic L1ME4b|LINE|L1 -74054 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 183.786 chr6 153236429 153236759 + 1.07143 NA Intergenic L2a|LINE|L2 -105312 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 155.143-4 chr5 89690606 89690796 + 1.07143 NA Intergenic MIRb|SINE|MIR 326019 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 103.071-10 chr6 63836116 63836291 + 1.07143 NA intron (NM_001292009, intron 36 of 43) L1MB8|LINE|L1 29367 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 179.286 chr11 38099998 38100279 + 1.07143 NA Intergenic Intergenic 161537 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 152.357-3 chr20 54546991 54547203 + 1.07143 NA intron (NM_018431, intron 1 of 7) MER58A|DNA|hAT-Charlie 71504 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 185.929-2 chr20 43999153 43999476 + 1.07143 NA intron (NM_001098797, intron 2 of 8) L1MEd|LINE|L1 53418 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 131.429-7 chr5 142038479 142038616 + 1.07143 NA Intergenic MIR|SINE|MIR -25520 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 164.571-5 chr5 89456881 89457214 + 1.07143 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -552942 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 263.929 chr4 177126293 177126668 + 1.07143 NA Intergenic Intergenic -183394 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 157.286-5 chr7 101027315 101027559 + 1.07143 NA intron (NM_001040105, intron 1 of 12) L1MEc|LINE|L1 7356 NR_133665 140453 Hs.271819 NM_001004430 ENSG00000169876 MUC17 MUC-17|MUC-3|MUC3 mucin 17, cell surface associated protein-coding 235.643 chr14 58225066 58225409 + 1.07143 NA intron (NM_018477, intron 10 of 12) intron (NM_018477, intron 10 of 12) -19568 NM_152132 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 117.857-5 chr12 24676152 24676306 + 1.07143 NA Intergenic Tigger4b|DNA|TcMar-Tigger -92061 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 129.5 chr10 68251631 68251798 + 1.07143 NA Intergenic Intergenic -19601 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 175.714-5 chr3 52865848 52866109 + 1.07143 NA intron (NM_001198974, intron 1 of 9) intron (NM_001198974, intron 1 of 9) -19426 NR_107031 102465866 NR_107031 ENSG00000275789 MIR8064 hsa-mir-8064 microRNA 8064 ncRNA 161.357-7 chr3 69238748 69239018 + 1.07143 NA intron (NM_015123, intron 7 of 22) intron (NM_015123, intron 7 of 22) -116288 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 197.143-2 chr5 36995595 36995890 + 1.07143 NA exon (NM_133433, exon 11 of 47) exon (NM_133433, exon 11 of 47) 118973 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 209.286 chr16 64006843 64007106 + 1.07143 NA Intergenic L1MC3|LINE|L1 1115089 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 158.857-3 chr7 33733941 33734141 + 1.07143 NA Intergenic Intergenic -170874 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 134.643 chr1 171728429 171728629 + 1.07143 NA non-coding (NR_033704, exon 3 of 9) non-coding (NR_033704, exon 3 of 9) 13536 NR_033704 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 111.857-16 chr7 117112150 117112289 + 1.07143 NA TTS (NR_002331) TTS (NR_002331) -21438 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 122.357-5 chr6 69341644 69341890 + 1.07143 NA intron (NM_001704, intron 26 of 31) intron (NM_001704, intron 26 of 31) 454699 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 115.429-7 chr6 122019305 122019696 + 1.07143 NA Intergenic Intergenic -380051 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 140.714-2 chr11 47645453 47645666 + 1.07143 NA Intergenic AluJb|SINE|Alu -2905 NM_001317232 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 172.643-2 chr5 2660354 2660675 + 1.07143 NA Intergenic Intergenic -52077 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 121.286 chr11 102759105 102759276 + 1.07143 NA Intergenic Intergenic 21438 NM_002425 4319 Hs.2258 NM_002425 ENSG00000166670 MMP10 SL-2|STMY2 matrix metallopeptidase 10 protein-coding 195.715 chr10 62243550 62243761 + 1.07143 NA intron (NM_001282941, intron 3 of 4) intron (NM_001282941, intron 3 of 4) 25189 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 98.7857-5 chrM 11746 11875 + 1.07143 NA Intergenic Intergenic -4296 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 157.143-5 chr7 87839457 87839930 + 1.07143 NA intron (NM_018843, intron 10 of 11) L2c|LINE|L2 36667 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 196.5 chr5 36943755 36944025 + 1.07143 NA intron (NM_015384, intron 1 of 45) L2|LINE|L2 67121 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 210.786-3 chr6 54330214 54330572 + 1.07143 NA intron (NM_014464, intron 4 of 10) L1PA7|LINE|L1 21952 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 101.072 chr18 5832771 5832903 + 1.07143 NA Intergenic MIRb|SINE|MIR -7858 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 139.143 chr1 208125033 208125180 + 1.07143 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 119278 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 138.643-6 chr3 16519650 16520089 + 1.07143 NA Intergenic Intergenic -6170 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 141.429-2 chr3 128129483 128129669 + 1.07143 NA intron (NM_001319086, intron 1 of 9) L1M4|LINE|L1 -5764 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 190.5 chr2 148036154 148036456 + 1.07143 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -14701 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 262 chr8 133099372 133099973 + 1.07143 NA intron (NM_003235, intron 43 of 47) L2a|LINE|L2 2930 NM_001045557 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 128.572 chr12 53379809 53379972 + 1.07143 NA promoter-TSS (NM_001251825) promoter-TSS (NM_001251825) -286 NM_138473 6667 Hs.620754 NM_003109 ENSG00000185591 SP1 - Sp1 transcription factor protein-coding 187.286 chr11 75087252 75087546 + 1.07143 NA Intergenic Intergenic 9491 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 156.572 chr18 5486320 5486581 + 1.07143 NA intron (NM_001281535, intron 4 of 21) L1MA4|LINE|L1 54106 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 148.928-2 chr8 85083888 85084170 + 1.07143 NA Intergenic Intergenic -23209 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 106.071-6 chr16 74270764 74270995 + 1.07143 NA Intergenic Intergenic -25935 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 253.857 chr9 117231335 117231731 + 1.07143 NA intron (NM_014010, intron 2 of 21) intron (NM_014010, intron 2 of 21) -50332 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 184.286-4 chr2 192609380 192609648 + 1.07143 NA Intergenic Intergenic -140331 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 221.357 chr18 64500455 64500691 + 1.07143 NA Intergenic L1MC|LINE|L1 -240518 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 173.857 chr12 14813970 14814177 + 1.07143 NA intron (NM_001013698, intron 1 of 1) intron (NM_001013698, intron 1 of 1) 109 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 160.072 chr16 2198427 2198632 + 1.07143 NA Intergenic Intergenic -1924 NM_020764 57524 Hs.643537 NM_020764 ENSG00000167971 CASKIN1 ANKS5A CASK interacting protein 1 protein-coding 175.714-8 chr7 35407363 35407584 + 1.07143 NA Intergenic Tigger1|DNA|TcMar-Tigger 93618 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 193.214 chr15 61602048 61602333 + 1.07143 NA Intergenic Intergenic -127728 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 163.286-4 chr5 22274721 22275000 + 1.07143 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -61010 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 223.143 chr6 44324854 44325216 + 1.07143 NA Intergenic Intergenic -11688 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 120.357-9 chr9 27726955 27727130 + 1.07143 NA Intergenic Intergenic -153176 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 220.929 chr10 42540790 42541221 + 1.07143 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 11865 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 160.143-2 chr17 42736230 42736476 + 1.07143 NA intron (NM_001991, intron 1 of 20) L1ME1|LINE|L1 8687 NM_001991 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 180.429 chr14 59815141 59815366 + 1.07143 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 55523 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 203.572-2 chr17 70242462 70242730 + 1.07143 NA Intergenic Intergenic 73061 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 208.643 chr12 88063442 88063896 + 1.07143 NA intron (NM_025114, intron 45 of 53) L2a|LINE|L2 28133 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 268.786 chr9 97472890 97473207 + 1.07143 NA intron (NM_001302884, intron 9 of 15) intron (NM_001302884, intron 9 of 15) -28132 NM_001166116 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 132.786-3 chr3 64917061 64917340 + 1.07143 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -229200 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 205.857 chr20 55650431 55650660 + 1.07143 NA Intergenic Intergenic -223348 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 125-8 chr3 26191970 26192203 + 1.07143 NA Intergenic Intergenic -318391 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 182.143 chr2 79746546 79746764 + 1.07143 NA intron (NM_001282598, intron 3 of 17) L2b|LINE|L2 -97296 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 132-5 chr3 18743799 18743941 + 1.07143 NA Intergenic Intergenic -298278 NM_001322872 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 169.571 chr16 17542220 17542541 + 1.07143 NA Intergenic Intergenic -71420 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 117.786-4 chr7 36651223 36651371 + 1.07143 NA intron (NM_001177507, intron 3 of 19) intron (NM_001177507, intron 3 of 19) -51177 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 181.429-4 chr20 19055199 19055396 + 1.07143 NA Intergenic L1MC2|LINE|L1 -157345 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 173.786-7 chr9 80010659 80010903 + 1.07143 NA intron (NR_121212, intron 3 of 4) L1M4|LINE|L1 35758 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 152.571 chr1 110371612 110371836 + 1.07143 NA intron (NM_001201548, intron 6 of 6) intron (NM_001201548, intron 6 of 6) 19302 NM_001201546 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 137.643-7 chr5 25333390 25333602 + 1.07143 NA Intergenic Intergenic 142543 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 261.714 chr2 134485037 134485402 + 1.07143 NA intron (NM_030923, intron 5 of 7) MER47A|DNA|TcMar-Tigger 231147 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 214 chr2 223280661 223281175 + 1.07143 NA Intergenic Intergenic 228988 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 151.286-2 chr11 115860956 115861228 + 1.07143 NA Intergenic HAL1ME|LINE|L1 -100892 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 152.5-3 chr2 15280305 15280576 + 1.07143 NA intron (NR_052013, intron 42 of 50) intron (NR_052013, intron 42 of 50) 280894 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 247.5 chr6 142891132 142891482 + 1.07143 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 53869 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 234.428 chr13 46053973 46054405 + 1.07143 NA intron (NM_001872, intron 10 of 10) L1M5|LINE|L1 1341 NR_046227 100509894 Hs.626139 NR_046226 ENSG00000235903 CPB2-AS1 - CPB2 antisense RNA 1 ncRNA 229.5 chr2 33974780 33975054 + 1.07143 NA intron (NR_126403, intron 4 of 5) AluSp|SINE|Alu -92309 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 117.643-3 chr2 180058028 180058156 + 1.07143 NA Intergenic HERV17-int|LTR|ERV1 -50795 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 153.857-2 chr14 78438162 78438407 + 1.07143 NA intron (NM_004796, intron 1 of 16) L2c|LINE|L2 34565 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 174.786-2 chr8 127269287 127269508 + 1.07143 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 24760 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 178.071-2 chr7 12737226 12737496 + 1.07143 NA Intergenic Intergenic 49728 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 169.643-2 chr14 46421291 46421577 + 1.07143 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -49925 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 132.143-8 chr8 117087777 117087924 + 1.07143 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -47145 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 205.072 chr8 68182991 68183257 + 1.07143 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -147249 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 188-2 chr2 76114963 76115270 + 1.07143 NA Intergenic Intergenic -404201 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 271.786 chr4 98683014 98683445 + 1.07143 NA Intergenic FRAM|SINE|Alu 24327 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 116-9 chr8 129064911 129065086 + 1.07143 NA Intergenic L1MA8|LINE|L1 -98997 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 106.786-6 chr6 74390582 74390722 + 1.07143 NA intron (NR_110856, intron 2 of 3) MLT1D-int|LTR|ERVL-MaLR 321201 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 268.572 chr5 114257556 114257857 + 1.07143 NA Intergenic L1PB4|LINE|L1 -104364 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 224.357 chr18 64124974 64125268 + 1.07143 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 21030 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 163.286-3 chr4 100703564 100703847 + 1.07143 NA Intergenic Intergenic -28592 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 245.714 chr3 120089908 120090281 + 1.07143 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 4353 NM_001146156 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 175.072 chr1 150313417 150313615 + 1.07143 NA Intergenic AluSp|SINE|Alu -7952 NR_146766 9129 Hs.11776 NM_004698 ENSG00000117360 PRPF3 HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90 pre-mRNA processing factor 3 protein-coding 172.572 chr2 230200486 230200680 + 1.07143 NA intron (NM_080424, intron 10 of 18) intron (NM_080424, intron 10 of 18) 19401 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 307.929 chr17 76662903 76663420 + 1.07143 NA Intergenic AluJo|SINE|Alu -8767 NR_130916 105274304 Hs.572495 NR_130916 ENSG00000261335 LOC105274304 - uncharacterized LOC105274304 ncRNA 196.929-2 chr18 5614937 5615219 + 1.07143 NA intron (NM_001281535, intron 1 of 21) intron (NM_001281535, intron 1 of 21) 13913 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 172.286 chr2 72188946 72189155 + 1.07143 NA intron (NR_135773, intron 19 of 21) L1MC4a|LINE|L1 -41188 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 173.357-2 chr6 42567042 42567308 + 1.07143 NA intron (NM_015255, intron 1 of 46) intron (NM_015255, intron 1 of 46) 3146 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 245.571-2 chr16 78845242 78845808 + 1.07143 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 745871 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 161.357-4 chr14 64325849 64326078 + 1.07143 NA intron (NM_001291712, intron 2 of 13) Tigger2a|DNA|TcMar-Tigger 12587 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 230.572 chr14 27042492 27042825 + 1.07143 NA Intergenic Intergenic 134016 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 275.714-2 chr2 19721912 19722369 + 1.07143 NA Intergenic MLT1A0|LTR|ERVL-MaLR -146714 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 179.786 chr14 26478996 26479310 + 1.07143 NA intron (NM_001366391, intron 4 of 5) intron (NM_001366391, intron 4 of 5) 74277 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 217.428 chrX 79204748 79205305 + 1.07143 NA Intergenic Intergenic 34054 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 257.929 chr1 119127413 119128195 + 1 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -12592 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 205.714 chr2 169907983 169908369 + 1 NA intron (NM_172070, intron 10 of 38) intron (NM_172070, intron 10 of 38) 80668 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 265.143 chr7 5664162 5664621 + 1 NA intron (NR_046834, intron 2 of 2) intron (NR_046834, intron 2 of 2) 16070 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 187.5-2 chr7 20582556 20582768 + 1 NA Intergenic Intergenic -33005 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 239.286 chr5 93888222 93888764 + 1 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -146893 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 281.5 chr5 19915575 19915981 + 1 NA intron (NM_001349562, intron 2 of 13) (TTTTC)n|Simple_repeat|Simple_repeat -29506 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 216.714 chr2 104290067 104290379 + 1 NA Intergenic Intergenic 118109 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 199.429 chr4 148369948 148370358 + 1 NA intron (NM_000901, intron 2 of 8) MamSINE1|SINE|tRNA-RTE 72261 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 124.357-2 chr17_KI270729v1_random 3451 3653 + 1 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 104.571-2 chr1 158812320 158812436 + 1 NA Intergenic Intergenic -18973 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 155.429-2 chr14 25506811 25507034 + 1 NA Intergenic Intergenic -456625 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 230.429 chr8 128127365 128127687 + 1 NA Intergenic MIR1_Amn|SINE|MIR -22590 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 230.286 chr3 65588658 65589121 + 1 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -304927 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 178.143-2 chr5 124861019 124861434 + 1 NA Intergenic L1MB7|LINE|L1 -116114 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 154.714-4 chr4 59448086 59448273 + 1 NA Intergenic Intergenic 434606 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 142.714-4 chr2 52679905 52680127 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22599 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 111.071-3 chr16 52815400 52815591 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -208520 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 98.8571 chr12 89279390 89279558 + 1 NA Intergenic L1PA17|LINE|L1 73027 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 181.5-3 chr3 85082062 85082366 + 1 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -19950 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 200.786 chr12 128912110 128912475 + 1 NA intron (NM_001366889, intron 5 of 12) intron (NM_001366889, intron 5 of 12) 58814 NM_144669 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 213.571 chr12 9062496 9063054 + 1 NA intron (NR_034140, intron 1 of 2) intron (NR_034140, intron 1 of 2) 2295 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 115.286-9 chr9 22454790 22455039 + 1 NA 3' UTR (NM_022160, exon 2 of 2) 3' UTR (NM_022160, exon 2 of 2) 8090 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 192.5 chr2 23256496 23256806 + 1 NA Intergenic L1MEc|LINE|L1 -128528 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 179.571 chr17 28438449 28438681 + 1 NA Intergenic AluJo|SINE|Alu -32353 NM_080669 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 170.429-2 chr2 63135782 63136241 + 1 NA intron (NR_148704, intron 18 of 18) AluJr|SINE|Alu -16469 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 100.857-14 chr5 6668029 6668146 + 1 NA intron (NM_001047, intron 4 of 4) intron (NM_001047, intron 4 of 4) 34647 NM_001324322 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 162.857-3 chr3 10088166 10088345 + 1 NA intron (NM_001018115, intron 34 of 43) intron (NM_001018115, intron 34 of 43) 20000 NM_173472 115795 Hs.190413 NM_173472 ENSG00000163705 FANCD2OS C3orf24 FANCD2 opposite strand protein-coding 231.286 chr14 73912402 73912799 + 1 NA intron (NR_040251, intron 8 of 11) L1MC5a|LINE|L1 25741 NM_001242928 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 130.429-7 chr9 27085531 27085683 + 1 NA Intergenic Intergenic -23534 NM_000459 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 162.643-2 chr14 73903911 73904206 + 1 NA exon (NM_001242927, exon 5 of 11) exon (NM_001242927, exon 5 of 11) 17199 NM_001242928 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 250.214-2 chr14 61895265 61895737 + 1 NA intron (NM_001367661, intron 2 of 8) MIR|SINE|MIR -32194 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 204.714 chr21 29062417 29062721 + 1 NA intron (NM_001282907, intron 9 of 15) intron (NM_001282907, intron 9 of 15) 11079 NM_006585 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 198.714 chr2 148514638 148514962 + 1 NA Intergenic Intergenic -129951 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 147.071-2 chr18 46961630 46961816 + 1 NA intron (NM_001353904, intron 3 of 13) HERVE-int|LTR|ERV1 2685 NM_001354366 107983955 Hs.745535 NM_001354366 ENSG00000275553 ELOA3C ELOA3B|TCEB3CL elongin A3 family member C protein-coding 115.857-2 chr10 63207019 63207198 + 1 NA exon (NM_001322252, exon 9 of 25) exon (NM_001322252, exon 9 of 25) 62115 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 184.571 chr15 57738126 57738472 + 1 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 31585 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 171.857-2 chr8 22022066 22022457 + 1 NA Intergenic L1MA4|LINE|L1 -1873 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 148.357 chr15 63867395 63867658 + 1 NA Intergenic L1MB3|LINE|L1 3493 NR_029944 494334 NR_029944 ENSG00000199156 MIR422A MIRN422A microRNA 422a ncRNA 176.429-2 chr15 51457097 51457549 + 1 NA intron (NM_001174116, intron 36 of 42) intron (NM_001174116, intron 36 of 42) 80077 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 111.857-13 chr4 58822395 58822593 + 1 NA Intergenic L1M4|LINE|L1 -161788 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 149.143-5 chr8 107731640 107731837 + 1 NA Intergenic Intergenic -233820 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 129.357-2 chr8 119762577 119762833 + 1 NA intron (NM_003184, intron 18 of 25) intron (NM_003184, intron 18 of 25) 70136 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 228.643 chr18 65881048 65881448 + 1 NA 3' UTR (NM_033646, exon 12 of 12) 3' UTR (NM_033646, exon 12 of 12) 130236 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 138.286-3 chr9 30673482 30673677 + 1 NA Intergenic L2|LINE|L2 -265125 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 227.5 chr1 191024628 191024965 + 1 NA Intergenic Intergenic 203702 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 125.857-2 chr16 54924437 54924873 + 1 NA non-coding (NR_110453, exon 3 of 6) non-coding (NR_110453, exon 3 of 6) 4123 NM_001308963 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 174.143-3 chr12 54375936 54376286 + 1 NA intron (NM_015481, intron 1 of 6) intron (NM_015481, intron 1 of 6) 8622 NM_015481 25946 Hs.505653 NM_015481 ENSG00000161642 ZNF385A HZF|RZF|ZFP385|ZNF385 zinc finger protein 385A protein-coding 115.286-7 chr8 88632933 88633112 + 1 NA Intergenic Intergenic -305539 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 128.214-5 chr2 17428068 17428402 + 1 NA Intergenic Intergenic 90205 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 206.643 chr7 43451387 43451750 + 1 NA intron (NM_015052, intron 12 of 29) MIR3|SINE|MIR 70974 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 147.571-3 chr2 216260423 216260675 + 1 NA intron (NM_020814, intron 3 of 3) L2a|LINE|L2 43660 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 102.143-2 chr1 66892135 66892325 + 1 NA intron (NM_024763, intron 3 of 16) intron (NM_024763, intron 3 of 16) 32626 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 108.214-3 chr2 193085114 193085277 + 1 NA Intergenic Intergenic 335350 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 209.643-3 chr8 118164418 118164813 + 1 NA intron (NR_146234, intron 4 of 5) MIRb|SINE|MIR -52796 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 115.714-12 chr4 63263856 63264004 + 1 NA Intergenic Intergenic -1102165 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 109.714-5 chr18 4003259 4003441 + 1 NA intron (NR_102696, intron 4 of 4) intron (NR_102696, intron 4 of 4) 40997 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 110.143-10 chr2 164356859 164357056 + 1 NA Intergenic Intergenic 211538 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 105.143-10 chr18 41885923 41886140 + 1 NA Intergenic Intergenic -69203 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 143.429-4 chr13 36064649 36064853 + 1 NA intron (NM_001330071, intron 3 of 16) A-rich|Low_complexity|Low_complexity 66631 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 181.143-2 chr12 62947468 62947757 + 1 NA Intergenic Intergenic -12462 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 202.571 chr22 45733142 45733546 + 1 NA intron (NM_013236, intron 7 of 11) intron (NM_013236, intron 7 of 11) -27180 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 163.714-2 chr20 9025376 9025595 + 1 NA Intergenic Intergenic -43569 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 152.286-4 chr2 210556865 210557151 + 1 NA intron (NR_161225, intron 2 of 38) intron (NR_161225, intron 2 of 38) 409 NM_001875 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 120.714-8 chr8 80066987 80067141 + 1 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) 13766 NM_001287143 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 112.143-7 chr2 73747203 73747420 + 1 NA Intergenic HAL1|LINE|L1 -9905 NM_001330390 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 166.857-2 chr21 36933953 36934309 + 1 NA intron (NM_001352515, intron 4 of 10) intron (NM_001352515, intron 4 of 10) 28227 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 133.714-10 chr8 85357498 85357794 + 1 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) -15932 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 160.286-5 chr5 39056548 39056922 + 1 NA intron (NM_001285439, intron 2 of 38) L2a|LINE|L2 17664 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 102.929-4 chr2 42195422 42195610 + 1 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -25285 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 126.286-4 chr3 177828824 177828991 + 1 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 12042 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 172.571 chr1 170062466 170062747 + 1 NA intron (NM_014970, intron 1 of 19) (TTTATA)n|Simple_repeat|Simple_repeat 6309 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 133.643-3 chr20 52310081 52310303 + 1 NA Intergenic Intergenic -118207 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 186.857-2 chr20 54545783 54546174 + 1 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 70385 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 120.143-8 chr14 79253364 79253604 + 1 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -25896 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 126.286-6 chr7 25978753 25978962 + 1 NA Intergenic Intergenic -28871 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 186.357-3 chr22 29410211 29410483 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21764 NM_145730 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 142.571 chr1 6707610 6707820 + 1 NA Intergenic L2a|LINE|L2 -5899 NM_018198 55735 Hs.462640 NM_018198 ENSG00000007923 DNAJC11 dJ126A5.1 DnaJ heat shock protein family (Hsp40) member C11 protein-coding 198.429-2 chr2 57996330 57996666 + 1 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -50144 NM_001130480 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 143.571-3 chr4 54126870 54127082 + 1 NA Intergenic AluJo|SINE|Alu 26813 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 344.714 chr7 28763754 28764451 + 1 NA intron (NM_001011666, intron 3 of 6) AluJr|SINE|Alu 77969 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 160.714 chr12 45977304 45977576 + 1 NA intron (NM_004719, intron 1 of 14) L1ME1|LINE|L1 13134 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 101.857 chr13 48790146 48790279 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 136283 NM_001308469 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 164.071 chr21 28523930 28524192 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie -15257 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 152.643-2 chr2 167344805 167345018 + 1 NA Intergenic Intergenic 157539 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 156.571-2 chr22 29990948 29991148 + 1 NA intron (NM_153051, intron 6 of 18) intron (NM_153051, intron 6 of 18) -16001 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 124.571-3 chr2 103997777 103997972 + 1 NA Intergenic Intergenic 410458 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 139.286-5 chr2 124735731 124735879 + 1 NA intron (NM_130773, intron 13 of 23) MIRc|SINE|MIR 710518 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 168.214-4 chr22 27228756 27229034 + 1 NA Intergenic Intergenic -4216 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 305.143 chr1 88990730 88991111 + 1 NA intron (NM_001008661, intron 1 of 13) intron (NM_001008661, intron 1 of 13) 1709 NM_001008661 56267 Hs.481898 NM_001008661 ENSG00000137944 KYAT3 CCBL2|KAT3|KATIII kynurenine aminotransferase 3 protein-coding 119.143-3 chr11 92134321 92134452 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -90648 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 287.857 chr1 73995619 73995944 + 1 NA Intergenic MIRc|SINE|MIR 202395 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 237.571 chr6 119369150 119369640 + 1 NA Intergenic LTR8|LTR|ERV1 -19634 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 145.857-2 chr21 30130897 30131093 + 1 NA Intergenic Intergenic 35810 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 147.571-2 chr16 34076649 34076884 + 1 NA Intergenic Intergenic -86812 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 102.929-8 chr5 135234908 135235010 + 1 NA intron (NR_161235, intron 3 of 5) Charlie29a|DNA|hAT-Charlie 13218 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 121.643-3 chr4 76466229 76466370 + 1 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 31070 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 199.071 chr12 42079137 42079346 + 1 NA Intergenic Intergenic 65633 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 188.286 chr3 65041537 65041915 + 1 NA Intergenic Tigger9b|DNA|TcMar-Tigger -353726 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 123.143-3 chr12 10172800 10172990 + 1 NA promoter-TSS (NM_002543) promoter-TSS (NM_002543) -704 NM_001172632 4973 Hs.412484 NM_002543 ENSG00000173391 OLR1 CLEC8A|LOX1|LOXIN|SCARE1|SLOX1 oxidized low density lipoprotein receptor 1 protein-coding 113.857 chr1 235253133 235253337 + 1 NA intron (NR_135074, intron 5 of 24) intron (NR_135074, intron 5 of 24) -63119 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 173.429 chr10 86504215 86504485 + 1 NA intron (NM_001318328, intron 2 of 18) MIR|SINE|MIR 17434 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 202.286-2 chr7 16272276 16272682 + 1 NA intron (NM_001101426, intron 6 of 9) AmnSINE1|SINE|5S-Deu-L2 61993 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 183.857 chr1 218174513 218174945 + 1 NA Intergenic L3|LINE|CR1 -110564 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 160.714-2 chr12 82480767 82480997 + 1 NA Intergenic Intergenic -122077 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 174.143-2 chr11 11323101 11323356 + 1 NA intron (NM_001363464, intron 8 of 9) MLT-int|LTR|ERVL-MaLR 30022 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 175.857 chr16 71842438 71842763 + 1 NA Intergenic Intergenic -3376 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 175.714-9 chr8 120159265 120159459 + 1 NA intron (NM_021110, intron 3 of 47) intron (NM_021110, intron 3 of 47) 34260 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 132.071-2 chr3 94947935 94948207 + 1 NA intron (NR_015400, intron 1 of 7) L2|LINE|L2 9808 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 135.071-3 chr4 44952606 44952871 + 1 NA Intergenic Intergenic -226104 NR_073095 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 198.286 chr1 238068575 238068945 + 1 NA Intergenic Intergenic -177838 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 164.429 chr4 79159387 79159668 + 1 NA intron (NR_038342, intron 3 of 5) L1PB|LINE|L1 166534 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 157.929-2 chr11 29528610 29528780 + 1 NA Intergenic L1ME4a|LINE|L1 -65718 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 117.143-8 chr2 222713709 222714039 + 1 NA Intergenic Intergenic 42216 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 132.286-3 chr20 6653817 6653952 + 1 NA Intergenic Intergenic 82252 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 126.429 chr1 97328437 97328641 + 1 NA intron (NM_000110, intron 16 of 22) intron (NM_000110, intron 16 of 22) 232616 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 212.5 chr17 79636816 79637066 + 1 NA Intergenic L1MA9|LINE|L1 -25890 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 105.429-14 chr9 75493551 75493694 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -397022 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 152.929 chr17 58138772 58139105 + 1 NA Intergenic MIRc|SINE|MIR -16216 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 102.429-6 chr8 124733236 124733363 + 1 NA Intergenic Intergenic -4792 NM_001282974 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 236.286 chr10 66134642 66134971 + 1 NA intron (NM_001127384, intron 13 of 17) L1MC5a|LINE|L1 563381 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 188.643 chr1 15237711 15237969 + 1 NA Intergenic Intergenic -9385 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 139.929-3 chr3 74363269 74363460 + 1 NA intron (NM_020872, intron 9 of 21) MER20|DNA|hAT-Charlie 157776 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 109.571 chr15 24295350 24295470 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125462 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 192.786-2 chr2 106864627 106865463 + 1 NA intron (NM_032528, intron 1 of 5) MER63B|DNA|hAT-Blackjack 20983 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 252.5 chr12 91065496 91065832 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -7310 NM_007035 11081 Hs.125750 NM_007035 ENSG00000139330 KERA CNA2|KTN|SLRR2B keratocan protein-coding 179.857 chr2 54897342 54897578 + 1 NA intron (NM_001039753, intron 20 of 40) MIRb|SINE|MIR 112812 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 175.429 chr3 150436565 150436757 + 1 NA intron (NM_014779, intron 2 of 3) intron (NM_014779, intron 2 of 3) 28363 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 190.714 chr2 25360166 25360388 + 1 NA Intergenic Intergenic -17687 NM_175629 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 247.286 chr7 12532523 12532999 + 1 NA intron (NR_136263, intron 3 of 3) intron (NR_136263, intron 3 of 3) 28364 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 130.857-5 chr4 42906640 42906942 + 1 NA intron (NM_001080476, intron 1 of 3) MIRb|SINE|MIR 13525 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 128.857 chr13 111653355 111653620 + 1 NA Intergenic Intergenic 57478 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 159.071 chr14 59627439 59627751 + 1 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 3219 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 216.429 chr17 31269360 31269705 + 1 NA intron (NM_001042492, intron 36 of 57) MLT1K|LTR|ERVL-MaLR 27707 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 267.571 chr2 47196641 47197056 + 1 NA intron (NR_110208, intron 4 of 4) intron (NR_110208, intron 4 of 4) -19912 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 139.714-5 chr5 24859763 24859998 + 1 NA Intergenic Intergenic -19297 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 242.714 chr11 99830636 99831063 + 1 NA intron (NM_001243270, intron 3 of 23) intron (NM_001243270, intron 3 of 23) 274704 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 197.5 chr7 105196096 105196340 + 1 NA intron (NM_182692, intron 3 of 15) intron (NM_182692, intron 3 of 15) 72859 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 152.929-2 chr7 98957903 98958238 + 1 NA exon (NM_001244580, exon 43 of 72) exon (NM_001244580, exon 43 of 72) -55095 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 120.429-5 chr17 80898366 80898527 + 1 NA intron (NM_020761, intron 20 of 33) L1M5|LINE|L1 72767 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 124.571 chr11 22767463 22767665 + 1 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 61815 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 196.857-2 chr15 60871364 60871703 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 189964 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 145.571-5 chr8 142033109 142033383 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR -143093 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 132.143-4 chr16 65021706 65021850 + 1 NA intron (NM_001797, intron 2 of 12) MER41-int|LTR|ERV1 100285 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 184.857 chr8 134374826 134375109 + 1 NA Intergenic L1MEg|LINE|L1 -223104 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 139.786 chr21 26437246 26437528 + 1 NA intron (NR_135515, intron 1 of 3) intron (NR_135515, intron 1 of 3) 31444 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 125.714-5 chr7 35698213 35698357 + 1 NA non-coding (NR_136255, exon 1 of 1) non-coding (NR_136255, exon 1 of 1) 3079 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 133.571-3 chr21 18275584 18275825 + 1 NA intron (NM_002772, intron 23 of 24) intron (NM_002772, intron 23 of 24) 29829 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 157.071 chr12 46368062 46368247 + 0.928571 NA intron (NM_001307936, intron 3 of 14) intron (NM_001307936, intron 3 of 14) 4619 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 165.214 chr12 23689810 23690070 + 0.928571 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -105354 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 186.357 chr16 66146038 66146396 + 0.928571 NA Intergenic Intergenic -220474 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 250 chr5 19089414 19089863 + 0.928571 NA Intergenic Charlie4a|DNA|hAT-Charlie 796634 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 152.643 chr13 82263505 82263853 + 0.928571 NA Intergenic L1ME3B|LINE|L1 -1036696 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 97.7142-6 chr5 15330884 15331086 + 0.928571 NA Intergenic MER44C|DNA|TcMar-Tigger -64425 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 120.214 chr1 16211842 16212330 + 0.928571 NA intron (NM_153213, intron 1 of 15) intron (NM_153213, intron 1 of 15) 566 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 118.357-3 chr8 125182626 125182869 + 0.928571 NA TTS (NR_146192) TTS (NR_146192) 90887 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 210.786 chr15 25323499 25324111 + 0.928571 NA intron (NR_146177, intron 146 of 147) intron (NR_146177, intron 146 of 147) 45462 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 185.857 chr11 86821198 86821456 + 0.928571 NA intron (NR_120591, intron 1 of 4) intron (NR_120591, intron 1 of 4) 20785 NM_001293179 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 236.286-2 chr11 123480070 123480514 + 0.928571 NA intron (NM_001367421, intron 2 of 20) intron (NM_001367421, intron 2 of 20) -29624 NM_001330396 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 119.071-2 chr2 121555048 121555221 + 0.928571 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 24254 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 133.571 chr1 106317797 106318022 + 0.928571 NA Intergenic Intergenic -289656 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 160.928 chr11 87521092 87521431 + 0.928571 NA Intergenic Intergenic 198150 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 127.571-5 chr4 57547647 57547919 + 0.928571 NA Intergenic L2c|LINE|L2 121911 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 157.429-3 chrX 85660356 85660553 + 0.928571 NA Intergenic L1PREC2|LINE|L1 -175326 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 197.357 chr8 119305044 119305397 + 0.928571 NA Intergenic L1MA8|LINE|L1 -19951 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 135.286-2 chr18 40621610 40621807 + 0.928571 NA Intergenic Intergenic 555422 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 183.429 chr1 28517758 28518197 + 0.928571 NA promoter-TSS (NM_001048194) promoter-TSS (NM_001048194) -249 NM_001269 1104 Hs.469723 NM_001269 ENSG00000180198 RCC1 CHC1|RCC1-I|SNHG3-RCC1 regulator of chromosome condensation 1 protein-coding 119.571-7 chr7 1489735 1489971 + 0.928571 NA intron (NM_001080453, intron 16 of 47) intron (NM_001080453, intron 16 of 47) 14536 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 169.357-2 chr8 124208322 124208620 + 0.928571 NA intron (NR_125420, intron 1 of 2) MLT1F2|LTR|ERVL-MaLR -36949 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 165.857-2 chr16 35277551 35278279 + 0.928571 NA Intergenic AluSq2|SINE|Alu 82156 NR_157261 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 134.857-9 chr6 41973442 41973657 + 0.928571 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) -31701 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 181.857 chr3 136613425 136613714 + 0.928571 NA intron (NM_005862, intron 3 of 33) AluSz|SINE|Alu 138809 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 222.071 chr3 113997115 113997463 + 0.928571 NA intron (NR_148531, intron 11 of 14) L1MC4a|LINE|L1 49276 NM_173570 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 163.429-2 chr2 99602352 99602653 + 0.928571 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -112485 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 159.786 chr3 192559701 192559907 + 0.928571 NA intron (NM_004113, intron 2 of 5) L1MC1|LINE|L1 44782 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 166.357 chr10 50452642 50452874 + 0.928571 NA intron (NM_147156, intron 5 of 10) L1ME4a|LINE|L1 171198 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 191 chr19 36139715 36140057 + 0.928571 NA promoter-TSS (NM_001302632) promoter-TSS (NM_001302632) -180 NM_001302632 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 130.714-4 chr17 40404621 40404920 + 0.928571 NA intron (NM_001067, intron 17 of 34) intron (NM_001067, intron 17 of 34) 13126 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 118.929-3 chr16 86888669 86888856 + 0.928571 NA Intergenic Intergenic 166671 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 136.429 chr1 189850087 189850371 + 0.928571 NA Intergenic LTR68|LTR|ERV1 625781 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 206.571-2 chr16 52731324 52731644 + 0.928571 NA Intergenic LTR12C|LTR|ERV1 -124509 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 228.428 chr2 58646633 58647021 + 0.928571 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 126074 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 162.929 chr11 32857946 32858257 + 0.928571 NA TTS (NM_024081) TTS (NM_024081) 28174 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 215.428 chr2 145564806 145565163 + 0.928571 NA Intergenic L2c|LINE|L2 897017 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 141.143-2 chr19 34048534 34048905 + 0.928571 NA Intergenic Intergenic -123785 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 155-3 chr17 25920081 25920326 + 0.928571 NA Intergenic ALR/Alpha|Satellite|centr 1169038 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 138.071 chr18 14044994 14045149 + 0.928571 NA Intergenic Intergenic 87364 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 153.071 chr10 92702840 92703023 + 0.928571 NA Intergenic Intergenic 12976 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 168.786 chr1 107288536 107288791 + 0.928571 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 140594 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 137.857 chr15 37656206 37656476 + 0.928571 NA Intergenic L1MA9|LINE|L1 -278266 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 246.928 chr5 114139646 114140050 + 0.928571 NA Intergenic Charlie1a|DNA|hAT-Charlie -222222 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 122.5-4 chr4 53600380 53600575 + 0.928571 NA intron (NR_046827, intron 1 of 1) intron (NR_046827, intron 1 of 1) 7521 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 124.571-8 chr9 27598432 27598647 + 0.928571 NA Intergenic Intergenic -24673 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 108.5-3 chr22 28402701 28402883 + 0.928571 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR -57077 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 157.143-3 chr2 44667721 44667905 + 0.928571 NA intron (NM_024766, intron 3 of 10) L2|LINE|L2 271075 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 171.072-2 chr11 108538014 108538354 + 0.928571 NA promoter-TSS (NM_001144764) promoter-TSS (NM_001144764) -7 NM_001144764 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 163.071 chr2 207446446 207446799 + 0.928571 NA Intergenic Intergenic -83340 NR_163946 228 chr8 9684155 9684627 + 0.928571 NA intron (NM_003747, intron 5 of 26) intron (NM_003747, intron 5 of 26) -57281 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 110.571-9 chr6 131447818 131447980 + 0.928571 NA Intergenic Intergenic -125327 NM_001369020 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 146.214 chr12 45036004 45036336 + 0.928571 NA intron (NM_001004329, intron 1 of 3) intron (NM_001004329, intron 1 of 3) 14929 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 180.286 chr15 54897558 54897905 + 0.928571 NA Intergenic Intergenic -159016 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 133.286-7 chr2 124240633 124240838 + 0.928571 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 215448 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 96.5714-6 chr8 56010605 56010806 + 0.928571 NA 3' UTR (NM_001111097, exon 13 of 13) 3' UTR (NM_001111097, exon 13 of 13) 63196 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 127.929-3 chr14 84542263 84542477 + 0.928571 NA Intergenic (AATTT)n|Simple_repeat|Simple_repeat -729562 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 123.857 chr13 40171966 40172115 + 0.928571 NA Intergenic L1PREC2|LINE|L1 -9769 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 163.357-2 chr14 66568122 66568396 + 0.928571 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 60852 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 203.572 chr17 14131390 14131873 + 0.928571 NA intron (NM_001303, intron 4 of 6) intron (NM_001303, intron 4 of 6) 62127 NM_001303 1352 Hs.462278 NM_001303 ENSG00000006695 COX10 - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 protein-coding 176.357 chr4 109016157 109016565 + 0.928571 NA intron (NM_198721, intron 4 of 36) MER52A|LTR|ERV1 -253308 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 174.714-2 chr2 182935443 182935784 + 0.928571 NA intron (NM_013436, intron 24 of 30) intron (NM_013436, intron 24 of 30) -68976 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 217.072 chr7 8860735 8861291 + 0.928571 NA Intergenic MER124|DNA?|DNA? 427404 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 250.214 chr10 105705349 105705764 + 0.928571 NA intron (NR_120625, intron 3 of 3) MIR|SINE|MIR 114777 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 140.214-2 chr3 65083260 65083448 + 0.928571 NA Intergenic Intergenic -395354 NM_001318781 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 148.786-2 chr5 19111251 19111560 + 0.928571 NA Intergenic L1MA5|LINE|L1 774867 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 175.357-3 chr2 217472340 217472691 + 0.928571 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 189782 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 210.286 chr11 100836413 100836799 + 0.928571 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -97668 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 167.643 chr14 31834244 31834816 + 0.928571 NA intron (NM_001201573, intron 6 of 8) intron (NM_001201573, intron 6 of 8) -110323 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 166.643-3 chr8 80422341 80422547 + 0.928571 NA Intergenic LTR33|LTR|ERVL -63149 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 126.857-5 chr14 57051365 57051645 + 0.928571 NA Intergenic Intergenic 217400 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 180.214 chr8 127468504 127468900 + 0.928571 NA intron (NR_024393, intron 4 of 4) Tigger17|DNA|TcMar-Tigger 13437 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 191.857-2 chr6 69834389 69834712 + 0.928571 NA Intergenic Intergenic -32006 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 98.3571-8 chr2 82120207 82120358 + 0.928571 NA Intergenic L2a|LINE|L2 -653336 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 205.429 chr7 80474612 80475016 + 0.928571 NA intron (NM_001102386, intron 4 of 7) intron (NM_001102386, intron 4 of 7) 37250 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 99.5714-3 chrX 80751922 80752031 + 0.928571 NA intron (NM_153252, intron 6 of 40) L1MA5A|LINE|L1 57901 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 100.143-4 chr18 32987221 32987349 + 0.928571 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -214262 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 117.571 chr1 167265260 167265825 + 0.928571 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 44656 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 252.143 chr3 90451728 90452339 + 0.928571 NA Intergenic ALR/Alpha|Satellite|centr 1344412 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 113.786-3 chr17 16522193 16522386 + 0.928571 NA Intergenic Intergenic -30096 NM_207387 388341 Hs.25425 NM_207387 ENSG00000181350 LRRC75A C17orf76|FAM211A leucine rich repeat containing 75A protein-coding 129.214-5 chr9 1552658 1552881 + 0.928571 NA Intergenic L2a|LINE|L2 -462578 NM_001289397 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 120.429-3 chr10 78650784 78650943 + 0.928571 NA Intergenic Intergenic 383521 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 166.286-5 chr5 20421687 20422128 + 0.928571 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 116356 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 123.071-6 chrX 97136353 97136629 + 0.928571 NA intron (NM_007309, intron 21 of 26) intron (NM_007309, intron 21 of 26) 252583 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 157.571-2 chr10 63441875 63442052 + 0.928571 NA intron (NM_001322258, intron 1 of 24) L2a|LINE|L2 11388 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 170.071-2 chr14 64578867 64579223 + 0.928571 NA intron (NM_172365, intron 8 of 11) L1PA14|LINE|L1 29084 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 152.286-3 chr13 107918135 107918434 + 0.928571 NA Intergenic Intergenic -50788 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 159.429-4 chr22 44961264 44961584 + 0.928571 NA intron (NM_001284296, intron 2 of 13) L1PA16|LINE|L1 42195 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 107.857-4 chr7 116766413 116766596 + 0.928571 NA intron (NM_000245, intron 11 of 20) intron (NM_000245, intron 11 of 20) 94308 NM_000245 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 198.214-2 chr9 91514941 91515325 + 0.928571 NA Intergenic Intergenic -90507 NM_001289999 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 104.571-7 chr17 10864595 10864781 + 0.928571 NA Intergenic THE1A|LTR|ERVL-MaLR -26601 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 133.714-2 chr11 14747498 14747744 + 0.928571 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 103817 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 143.214 chr1 44449597 44449825 + 0.928571 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 25710 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 153.071-2 chr2 205658250 205658501 + 0.928571 NA Intergenic Intergenic -24125 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 127.429-11 chr5 167777066 167777229 + 0.928571 NA intron (NM_001080428, intron 1 of 24) Tigger13a|DNA|TcMar-Tigger 22218 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 178.357 chr17 67852345 67852618 + 0.928571 NA intron (NM_182641, intron 1 of 27) intron (NM_182641, intron 1 of 27) 26978 NM_182641 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 204 chr13 108387476 108387806 + 0.928571 NA Intergenic MIR|SINE|MIR 118012 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 194.357-2 chr5 13124011 13124366 + 0.928571 NA Intergenic L1ME4b|LINE|L1 -91302 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 135.571-3 chr9 137528023 137528218 + 0.928571 NA intron (NM_001098537, intron 8 of 34) L1MD3|LINE|L1 22282 NM_152286 375775 Hs.294147 NM_152286 ENSG00000130653 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin like phospholipase domain containing 7 protein-coding 210.5 chr6 55850081 55850398 + 0.928571 NA intron (NM_001329754, intron 1 of 5) MIR|SINE|MIR 25351 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 105-6 chr11 120991288 120991481 + 0.928571 NA Intergenic Intergenic -32688 NM_001130047 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 166.643-2 chr19 13774214 13774486 + 0.928571 NA promoter-TSS (NM_014047) promoter-TSS (NM_014047) -106 NM_014047 28974 Hs.231616 NM_014047 ENSG00000104979 C19orf53 HSPC023|LYDG10 chromosome 19 open reading frame 53 protein-coding 127.714-5 chr14 68187553 68187748 + 0.928571 NA intron (NM_133509, intron 7 of 10) L1ME4a|LINE|L1 364058 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 150.357 chr15 71420341 71420639 + 0.928571 NA intron (NM_024817, intron 6 of 16) L1M1|LINE|L1 -126746 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 173.214 chr1 207340069 207340423 + 0.928571 NA intron (NM_000574, intron 9 of 9) L1MA4A|LINE|L1 18568 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 155.714-3 chr2 60779469 60779644 + 0.928571 NA intron (NM_022894, intron 8 of 21) intron (NM_022894, intron 8 of 21) 23288 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 125.143-3 chr11 77233258 77233409 + 0.928571 NA intron (NM_182833, intron 13 of 16) intron (NM_182833, intron 13 of 16) 68333 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 189.571-2 chr20 52289750 52290159 + 0.928571 NA Intergenic Charlie8|DNA|hAT-Charlie -97969 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 149.786-4 chr15 78832398 78832624 + 0.928571 NA Intergenic Intergenic -21047 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 258.357 chr6 51781644 51782085 + 0.928571 NA intron (NM_138694, intron 53 of 66) intron (NM_138694, intron 53 of 66) 159994 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 202.786-2 chr4 39715691 39716206 + 0.928571 NA intron (NM_001111113, intron 1 of 4) intron (NM_001111113, intron 1 of 4) 17812 NM_001111113 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 188 chr1 201840543 201840864 + 0.928571 NA intron (NM_018085, intron 1 of 23) L1MC4a|LINE|L1 -11144 NR_046696 100873949 Hs.604842 NR_046696 ENSG00000231871 IPO9-AS1 - IPO9 antisense RNA 1 ncRNA 227.5-2 chr2 166764188 166764482 + 0.928571 NA Intergenic MLT1L|LTR|ERVL-MaLR -124152 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 178.857-2 chr5 22610857 22611145 + 0.928571 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 242343 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 155.214-3 chr2 103551636 103551849 + 0.928571 NA Intergenic MSTB1|LTR|ERVL-MaLR -567313 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 171.643 chr8 53069067 53069385 + 0.928571 NA Intergenic Intergenic 129318 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 162.143 chr4 166591302 166591627 + 0.928571 NA Intergenic Intergenic 642962 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 286.929 chr7 83808032 83808695 + 0.928571 NA Intergenic Intergenic -159224 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 108.643-7 chr7 7649913 7650064 + 0.928571 NA intron (NM_002947, intron 4 of 7) MLT1A0|LTR|ERVL-MaLR 9236 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 165.714-3 chr8 138178369 138178846 + 0.928571 NA exon (NM_001362965, exon 10 of 20) exon (NM_001362965, exon 10 of 20) -95062 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 138.429 chr14 84946888 84947125 + 0.928571 NA Intergenic Intergenic -324926 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 168.786-2 chr1 156134509 156134701 + 0.928571 NA intron (NM_005572, intron 3 of 9) intron (NM_005572, intron 3 of 9) 8435 NM_001257374 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 146.286 chr4 59546649 59547004 + 0.928571 NA Intergenic MIR|SINE|MIR 533253 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 113.357-5 chr4 55549823 55550050 + 0.928571 NA Intergenic Intergenic -3027 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 145.357-4 chr2 16002984 16003200 + 0.928571 NA Intergenic Tigger17a|DNA|TcMar-Tigger -47335 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 126.929-6 chr6 154836146 154836364 + 0.928571 NA Intergenic Intergenic -17105 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 228.071 chr14 70256366 70256860 + 0.928571 NA Intergenic Intergenic -8812 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 143.714-2 chr18 9804364 9804629 + 0.928571 NA intron (NM_006868, intron 3 of 6) intron (NM_006868, intron 3 of 6) -81477 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 140-5 chr3 127205898 127206161 + 0.928571 NA Intergenic Intergenic 12898 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 150.786 chr5 34624785 34625110 + 0.928571 NA Intergenic L2c|LINE|L2 -31381 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 143.786-3 chr3 27363422 27363675 + 0.928571 NA intron (NM_152534, intron 2 of 38) intron (NM_152534, intron 2 of 38) 5835 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 131.786-5 chr3 170721358 170721537 + 0.928571 NA intron (NR_135556, intron 3 of 5) L1MA3|LINE|L1 -135372 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 183.714-2 chr14 35906656 35907149 + 0.928571 NA Intergenic L1MD1|LINE|L1 80564 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 117.214-2 chr17 65711449 65711600 + 0.928571 NA intron (NR_126542, intron 2 of 5) intron (NR_126542, intron 2 of 5) 114927 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 136.143-4 chr18 30901533 30901729 + 0.928571 NA Intergenic L1PB4|LINE|L1 141111 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 171.5 chr15 63799700 63800056 + 0.928571 NA intron (NM_003922, intron 1 of 77) AluJr4|SINE|Alu 34070 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 113 chr1 115570877 115571103 + 0.928571 NA Intergenic LTR37-int|LTR|ERV1 -70980 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 197.571 chr1 105730689 105731008 + 0.928571 NA Intergenic Intergenic -111913 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 133.071-3 chr8 81756387 81756570 + 0.928571 NA intron (NM_152284, intron 3 of 4) MIR3|SINE|MIR 24030 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 163.214 chr12 16022797 16023073 + 0.928571 NA intron (NM_015954, intron 6 of 8) L1MCa|LINE|L1 111603 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 253.143 chr5 26052111 26052671 + 0.928571 NA Intergenic Intergenic 861438 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 205.357 chr1 52576984 52577466 + 0.928571 NA Intergenic Intergenic -24133 NM_001009881 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 152.571-2 chr6 56307934 56308191 + 0.928571 NA intron (NM_001318752, intron 1 of 28) MLT1A1|LTR|ERVL-MaLR -60482 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 178.214 chr1 59954498 59954836 + 0.928571 NA Intergenic L1MC4|LINE|L1 -27869 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 164.5-3 chr8 91681585 91681826 + 0.928571 NA Intergenic MLT1C|LTR|ERVL-MaLR 335975 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 136.571-5 chr6 61945715 61946196 + 0.928571 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 340270 NR_146871 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 125.429-5 chr3 101353956 101354200 + 0.928571 NA intron (NM_020654, intron 11 of 23) intron (NM_020654, intron 11 of 23) -33503 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 172.786 chr12 47924376 47924634 + 0.928571 NA Intergenic Intergenic -19474 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 101-9 chr5 3777487 3777718 + 0.928571 NA Intergenic L1MB7|LINE|L1 181770 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 132.143-7 chr5 45292084 45292376 + 0.928571 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 404150 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 174.5-2 chr7 42771322 42771619 + 0.928571 NA Intergenic Intergenic -65023 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 104.214 chr1 237258637 237258895 + 0.928571 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) -212353 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 157.714 chr10 43869803 43869984 + 0.928571 NA intron (NR_038268, intron 3 of 4) intron (NR_038268, intron 3 of 4) 10482 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 202.214 chr21 36149925 36150255 + 0.928571 NA intron (NR_038892, intron 1 of 3) AluJo|SINE|Alu 6218 NR_038892 100506428 Hs.651214 NR_038892 ENSG00000236830 CBR3-AS1 PlncRNA-1|PlncRNA1 CBR3 antisense RNA 1 ncRNA 140-2 chr14 89200992 89201161 + 0.928571 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 216157 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 175.357-2 chr2 106875699 106875958 + 0.928571 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 10200 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 131.214-2 chr7 132468096 132468360 + 0.928571 NA intron (NM_001105543, intron 3 of 3) (AC)n|Simple_repeat|Simple_repeat 108242 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 184.143-2 chr22 38614400 38614779 + 0.928571 NA intron (NM_001013647, intron 11 of 16) intron (NM_001013647, intron 11 of 16) 41803 NM_001291030 646851 Hs.542707 NM_001013647 ENSG00000184949 FAM227A - family with sequence similarity 227 member A protein-coding 196.786-3 chrX 126666326 126666607 + 0.928571 NA Intergenic MIRc|SINE|MIR -113652 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 139-4 chr2 64059411 64059588 + 0.928571 NA Intergenic Intergenic -40071 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 122.714-3 chr19 27649653 27649796 + 0.928571 NA Intergenic HSAT4|Satellite|centr -143707 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 132.571-9 chr22 29621988 29622183 + 0.928571 NA intron (NM_181831, intron 1 of 14) intron (NM_181831, intron 1 of 14) 18452 NM_181832 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 211.928 chr8 82542834 82543224 + 0.928571 NA Intergenic Intergenic -369075 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 116.571-12 chr6 54252779 54252976 + 0.928571 NA intron (NM_138569, intron 11 of 12) intron (NM_138569, intron 11 of 12) -55564 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 122.571-3 chr20 4068334 4068591 + 0.928571 NA Intergenic LTR16C|LTR|ERVL -52904 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 170.214-2 chr21 30098157 30098582 + 0.928571 NA Intergenic Intergenic 68436 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 112.571-9 chr6 132487904 132488037 + 0.928571 NA intron (NM_001326579, intron 2 of 9) L1ME1|LINE|L1 24813 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 110.286-8 chr8 95474496 95474679 + 0.928571 NA intron (NR_038207, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat -205386 NM_001363260 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 163.643 chr10 14119287 14119503 + 0.928571 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 45111 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 120.286-4 chr7 71398765 71398974 + 0.928571 NA intron (NM_022479, intron 3 of 10) HAL1|LINE|L1 -91099 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 167.429-2 chr16 75951705 75952008 + 0.928571 NA Intergenic MamRep434|DNA|TcMar-Tigger -225366 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 198.643 chr10 64434883 64435139 + 0.928571 NA Intergenic MER39|LTR|ERV1 -390517 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 121.071-2 chr13 68361089 68361235 + 0.928571 NA Intergenic Charlie25|DNA|hAT-Charlie 524163 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 226.572 chr18 33826087 33826609 + 0.928571 NA Intergenic L2|LINE|L2 222264 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 146.143-2 chr15 87753184 87753395 + 0.928571 NA Intergenic Intergenic 176360 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 226.286 chr18 954034 954395 + 0.928571 NA Intergenic Intergenic -26221 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 270.643 chrX 64126208 64126669 + 0.928571 NA Intergenic L1MEf|LINE|L1 79270 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 195.571 chr15 65448976 65449374 + 0.928571 NA intron (NR_135485, intron 20 of 20) AluSx|SINE|Alu -26228 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 215.5 chr1 170115377 170115730 + 0.928571 NA Intergenic Intergenic -30494 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 124.571-5 chr4 38714689 38714847 + 0.928571 NA Intergenic L1M5|LINE|L1 -50140 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 188.071-2 chr12 28301469 28301861 + 0.928571 NA intron (NM_001352082, intron 4 of 13) L1MC4a|LINE|L1 -110927 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 138.786 chr10 15431430 15431640 + 0.928571 NA Intergenic L1MC5|LINE|L1 -60246 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 188.071 chr1 221340009 221340359 + 0.928571 NA Intergenic Intergenic -3888 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 118.429-3 chr4 40305617 40305865 + 0.928571 NA Intergenic Intergenic -1444 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 178.571-2 chr14 23188788 23189051 + 0.928571 NA intron (NM_001370218, intron 1 of 15) intron (NM_001370218, intron 1 of 15) 3598 NM_001370218 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 123.143-9 chrX 86884863 86885014 + 0.928571 NA Intergenic L1MA2|LINE|L1 621970 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 119.714-2 chr11 30660155 30660389 + 0.928571 NA Intergenic MIRb|SINE|MIR -73919 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 313.214 chr4 150728335 150729009 + 0.928571 NA intron (NM_001367550, intron 36 of 56) L1MA5|LINE|L1 146521 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 156.143-8 chr7 136157223 136157458 + 0.928571 NA Intergenic L1MC4|LINE|L1 -179981 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 98.9285-2 chr6 45774594 45774766 + 0.928571 NA Intergenic Plat_L3|LINE|CR1 162917 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 205.786-2 chr4 106915940 106916359 + 0.928571 NA Intergenic Intergenic 120164 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 149 chr3 96803712 96803930 + 0.928571 NA Intergenic Intergenic -10773 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 277.5 chr3 136686512 136686963 + 0.928571 NA intron (NM_005862, intron 1 of 33) MER57A-int|LTR|ERV1 65641 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 133-4 chr3 97302569 97302755 + 0.928571 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -136945 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 115.5-4 chr5 89917560 89917700 + 0.928571 NA Intergenic Intergenic 99090 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 124.929 chr15 67147242 67147404 + 0.928571 NA intron (NM_001145103, intron 1 of 8) intron (NM_001145103, intron 1 of 8) 9302 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 278.571 chr14 55029721 55030196 + 0.928571 NA intron (NM_080867, intron 1 of 1) MIR1_Amn|SINE|MIR 2722 NM_080867 122809 Hs.744302 NM_080867 ENSG00000180008 SOCS4 SOCS7 suppressor of cytokine signaling 4 protein-coding 106-8 chr4 54572689 54572857 + 0.928571 NA Intergenic Intergenic 34358 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 145.286-5 chr15 96609253 96609496 + 0.928571 NA Intergenic AluJo|SINE|Alu 172280 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 153.929 chr11 95295500 95295769 + 0.928571 NA Intergenic Intergenic -63159 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 96.5714-5 chr4 171959612 171959760 + 0.928571 NA intron (NM_001034845, intron 2 of 12) FLAM_A|SINE|Alu -146079 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 195.357 chr12 54786873 54787117 + 0.928571 NA Intergenic L1MB3|LINE|L1 -67521 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 179.429 chr14 68787992 68788208 + 0.928571 NA 3' UTR (NM_004926, exon 2 of 2) 3' UTR (NM_004926, exon 2 of 2) 5814 NM_001244698 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 110.429-5 chr18 43782839 43782994 + 0.928571 NA Intergenic Intergenic -505426 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 184.071-4 chr3 179497264 179497569 + 0.928571 NA Intergenic L1M1|LINE|L1 -45946 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 261.143 chr21 28669430 28670027 + 0.928571 NA Intergenic Intergenic 130410 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 97.8571-4 chr15 71016199 71016336 + 0.928571 NA intron (NM_017691, intron 14 of 15) intron (NM_017691, intron 14 of 15) 123824 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 161.357-5 chr14 83503807 83504033 + 0.928571 NA Intergenic Intergenic 861288 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 130.071-6 chr8 83566471 83566630 + 0.928571 NA Intergenic Intergenic 162792 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 162.071-2 chr22 40850770 40850986 + 0.928571 NA exon (NM_001278589, exon 2 of 12) exon (NM_001278589, exon 2 of 12) 5761 NM_003932 6767 Hs.712713 NM_003932 ENSG00000100380 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 ST13 Hsp70 interacting protein protein-coding 185.143-2 chr11 5432983 5433225 + 0.928571 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 8449 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 98.4999 chr1 87317854 87317993 + 0.928571 NA Intergenic Intergenic -10957 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 113.786 chr10 97090007 97090226 + 0.928571 NA intron (NM_003061, intron 4 of 36) intron (NM_003061, intron 4 of 36) -12640 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 131.429-9 chr8 118600378 118600849 + 0.928571 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -20388 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 180.643 chr3 171407921 171408243 + 0.928571 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 52323 NM_001161564 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 159 chr10 33572842 33573177 + 0.928571 NA Intergenic L1PB3|LINE|L1 199671 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 139-6 chr7 72166886 72167236 + 0.928571 NA intron (NM_001363460, intron 2 of 5) AluSz6|SINE|Alu 170330 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 128.286-2 chr3 66615153 66615352 + 0.928571 NA Intergenic Charlie4a|DNA|hAT-Charlie -114831 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 219 chr6 141814183 141814648 + 0.928571 NA Intergenic Intergenic 274384 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 121.429-4 chr6 141888993 141889128 + 0.928571 NA Intergenic L1PA15|LINE|L1 199739 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 134-9 chr3 187505236 187505532 + 0.928571 NA Intergenic Intergenic 58338 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 141.5-3 chr4 38897855 38898231 + 0.928571 NA intron (NM_001330764, intron 3 of 13) intron (NM_001330764, intron 3 of 13) 30011 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 167.928 chr2 147403491 147403829 + 0.928571 NA Intergenic Intergenic -440857 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 177.857-3 chr13 66726058 66726267 + 0.928571 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -99007 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 177.5-3 chr8 117226002 117226285 + 0.928571 NA Intergenic L2b|LINE|L2 91148 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 135.714-4 chr2 35461327 35461604 + 0.928571 NA Intergenic Intergenic -9940 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 108.786-4 chr3 99981944 99982093 + 0.928571 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -17620 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 175.357-4 chr22 37192614 37192856 + 0.928571 NA intron (NM_001365878, intron 2 of 4) MER41-int|LTR|ERV1 -4488 NM_031910 114904 Hs.22011 NM_031910 ENSG00000133466 C1QTNF6 CTFP6|CTRP6|ZACRP6 C1q and TNF related 6 protein-coding 131.857-5 chr3 171687621 171687805 + 0.928571 NA intron (NM_002662, intron 14 of 26) intron (NM_002662, intron 14 of 26) 122770 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 97.6428-3 chr8 110141632 110141834 + 0.928571 NA Intergenic Intergenic -165962 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 168.214 chr1 73923711 73923981 + 0.928571 NA Intergenic L1MEg|LINE|L1 249167 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 162.5-2 chr9 112534882 112535162 + 0.928571 NA intron (NM_133465, intron 1 of 3) L1MA8|LINE|L1 -47378 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 124.214 chr10 127076762 127077130 + 0.928571 NA intron (NM_001290223, intron 23 of 51) intron (NM_001290223, intron 23 of 51) 119645 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 222.5 chr4 145601110 145601519 + 0.928571 NA Intergenic Charlie25|DNA|hAT-Charlie -18071 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 125.429-2 chr16 89312139 89312360 + 0.928571 NA intron (NM_001256182, intron 4 of 13) intron (NM_001256182, intron 4 of 13) -8884 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 134.571-13 chr6 68739744 68739917 + 0.928571 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 104548 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 183.857-2 chr2 166307562 166307947 + 0.928571 NA intron (NM_001365536, intron 2 of 26) intron (NM_001365536, intron 2 of 26) 68190 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 141.143 chr17 2030697 2030929 + 0.928571 NA intron (NM_001383, intron 1 of 12) intron (NM_001383, intron 1 of 12) 701 NM_001383 1801 Hs.513856 NM_001383 ENSG00000108963 DPH1 DEDSSH|DPH2L|DPH2L1|OVCA1 diphthamide biosynthesis 1 protein-coding 323.714 chr16 55446793 55447632 + 0.928571 NA intron (NR_147198, intron 2 of 6) MIR3|SINE|MIR 15085 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 136.286-4 chr21 15649994 15650271 + 0.928571 NA Intergenic Intergenic -79802 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 164.929 chr2 99836418 99836630 + 0.928571 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 269059 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 121.071-5 chr6 16669213 16669465 + 0.928571 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 90845 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 154.929 chr10 28744009 28744217 + 0.928571 NA intron (NR_120652, intron 2 of 3) intron (NR_120652, intron 2 of 3) 463 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 178.571 chr12 15119967 15120259 + 0.928571 NA intron (NM_001190726, intron 2 of 3) intron (NM_001190726, intron 2 of 3) -31810 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 156.571-3 chr3 181254093 181254362 + 0.928571 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 22490 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 190.929-2 chr5 66644227 66644573 + 0.928571 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 48007 NM_001164664 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 161 chr14 79180693 79180974 + 0.928571 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -19149 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 208.929-2 chr7 140654046 140654359 + 0.928571 NA Intergenic Helitron3Na_Mam|RC|Helitron -12742 NM_001318053 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 151.5-5 chr8 125800767 125801185 + 0.928571 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 150221 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 145.571-3 chr3 142401895 142402119 + 0.928571 NA intron (NM_019001, intron 18 of 41) intron (NM_019001, intron 18 of 41) 46030 NM_001282857 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 163.428-2 chr17 59807757 59808101 + 0.928571 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -33337 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 170.286-3 chr2 183759351 183759600 + 0.928571 NA Intergenic Intergenic -619500 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 121-5 chr17 71914980 71915160 + 0.928571 NA Intergenic Intergenic 110909 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 146.786-3 chr2 75735168 75735374 + 0.928571 NA Intergenic Intergenic -24356 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 166.714 chr2 148459548 148459985 + 0.928571 NA intron (NM_018328, intron 6 of 14) intron (NM_018328, intron 6 of 14) -184985 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 105.071-7 chr6 133603477 133603608 + 0.928571 NA intron (NR_109982, intron 4 of 8) MLT2B4|LTR|ERVL -217605 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 123.714-8 chr6 78337090 78337261 + 0.928571 NA Intergenic Intergenic 202134 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 144.357-2 chr5 16091490 16091765 + 0.928571 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 88164 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 148.071-5 chr6 156571737 156572117 + 0.928571 NA Intergenic Intergenic 193177 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 172.857-4 chr4 27694321 27694574 + 0.928571 NA Intergenic Intergenic 476968 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 113.714-9 chr5 109989072 109989223 + 0.928571 NA Intergenic Intergenic 105965 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 144.143-4 chr2 228709941 228710148 + 0.928571 NA Intergenic L1ME2z|LINE|L1 -98649 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 151.143 chr2 16706717 16706896 + 0.928571 NA Intergenic Intergenic -40972 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 107.5-3 chr9 130134875 130135289 + 0.928571 NA exon (NM_001136557, exon 20 of 20) exon (NM_001136557, exon 20 of 20) 9137 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 123.714-5 chr4 68191485 68191683 + 0.928571 NA intron (NR_104048, intron 2 of 9) intron (NR_104048, intron 2 of 9) 9292 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 266.643 chr9 25349004 25349464 + 0.928571 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 329624 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 143.286-4 chr7 7090112 7090277 + 0.928571 NA non-coding (NR_034022, exon 1 of 1) non-coding (NR_034022, exon 1 of 1) 6592 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 111.571-4 chr3 145637553 145637724 + 0.928571 NA Intergenic Intergenic 431547 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 268.286 chr12 116770950 116771360 + 0.928571 NA intron (NM_001109903, intron 6 of 11) intron (NM_001109903, intron 6 of 11) 32840 NM_032814 84900 Hs.437195 NM_032814 ENSG00000135119 RNFT2 TMEM118 ring finger protein, transmembrane 2 protein-coding 108.143-6 chr2 63092924 63093084 + 0.928571 NA Intergenic Intergenic 26538 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 172.786-2 chr8 105217885 105218167 + 0.928571 NA Intergenic L1PA17|LINE|L1 -100412 NM_001362836 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 143.357 chr1 225543511 225543727 + 0.928571 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) 109504 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 219.786 chr8 89268286 89268848 + 0.928571 NA Intergenic Intergenic 489144 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 231.5-2 chr3 101196755 101197178 + 0.928571 NA Intergenic Intergenic 123609 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 181.357 chr10 77601379 77601720 + 0.928571 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 36259 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 152.071-4 chr4 37083881 37084177 + 0.928571 NA Intergenic L1MB7|LINE|L1 82250 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 173.929 chr2 148806624 148806822 + 0.928571 NA Intergenic L1M4|LINE|L1 -68504 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 144.786-2 chr14 28460000 28460199 + 0.928571 NA Intergenic L1MC1|LINE|L1 305220 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 96.5714-8 chr8 119559469 119559635 + 0.928571 NA intron (NM_001330600, intron 25 of 25) intron (NM_001330600, intron 25 of 25) 33456 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 109.143-5 chr16 83051111 83051298 + 0.928571 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -60906 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 169.643 chr10 65932534 65932796 + 0.928571 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 361240 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 169-4 chr8 108338652 108338841 + 0.928571 NA Intergenic THE1D-int|LTR|ERVL-MaLR -90029 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 163.214-5 chr5 56256484 56256777 + 0.857143 NA Intergenic L1MCc|LINE|L1 -23300 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 158.571-4 chr5 133509747 133510045 + 0.857143 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -82190 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 121.5-6 chr9 119022228 119022749 + 0.857143 NA Intergenic Intergenic 342817 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 195.643 chr10 65776505 65776854 + 0.857143 NA Intergenic L1MB8|LINE|L1 205254 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 119.429-5 chr5 33784109 33784335 + 0.857143 NA intron (NM_001324511, intron 2 of 2) L1ME1|LINE|L1 107768 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 144-4 chr2 112540011 112540315 + 0.857143 NA 3' UTR (NM_153712, exon 7 of 7) 3' UTR (NM_153712, exon 7 of 7) -1752 NM_001137604 84172 Hs.745127 NM_019014 ENSG00000125630 POLR1B RPA135|RPA2|Rpo1-2 RNA polymerase I subunit B protein-coding 244.571 chr11 83010126 83010576 + 0.857143 NA intron (NM_001286060, intron 1 of 4) AluJr4|SINE|Alu 23923 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 202.5-2 chr2 162427244 162427569 + 0.857143 NA intron (NM_033272, intron 8 of 15) L1ME1|LINE|L1 83038 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 213.857 chr8 114668947 114669316 + 0.857143 NA Intergenic MIR|SINE|MIR 998882 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 140-3 chr17 73150417 73150629 + 0.857143 NA Intergenic MLT1F|LTR|ERVL-MaLR -14487 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 155.214 chr14 73625294 73625517 + 0.857143 NA Intergenic AluSq|SINE|Alu 8561 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 168.571 chr22 21823428 21823737 + 0.857143 NA intron (NM_002745, intron 1 of 8) L2a|LINE|L2 44098 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 173.786-6 chr7 95686639 95686861 + 0.857143 NA Intergenic Intergenic -85756 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 142.357-2 chr3 83314018 83314221 + 0.857143 NA Intergenic L1MEc|LINE|L1 1327977 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 153.143 chr12 42338932 42339310 + 0.857143 NA intron (NM_001364830, intron 2 of 6) intron (NM_001364830, intron 2 of 6) 7323 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 99 chr1 220659225 220659380 + 0.857143 NA intron (NM_018650, intron 17 of 17) intron (NM_018650, intron 17 of 17) -31061 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 223.786 chr2 218979067 218979394 + 0.857143 NA Intergenic AluSc8|SINE|Alu 2946 NR_015390 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 121 chr1 43338786 43339039 + 0.857143 NA intron (NM_005373, intron 3 of 11) intron (NM_005373, intron 3 of 11) 1108 NM_005373 4352 Hs.82906 NM_005373 ENSG00000117400 MPL C-MPL|CD110|MPLV|THCYT2|THPOR|TPOR MPL proto-oncogene, thrombopoietin receptor protein-coding 98.4286 chr1 58561608 58561789 + 0.857143 NA Intergenic Intergenic -14972 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 116.143-9 chr4 54165343 54165492 + 0.857143 NA Intergenic Intergenic -63876 NM_001347828 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 248 chr6 40793215 40793872 + 0.857143 NA Intergenic Intergenic -206179 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 161.071 chr6 124541996 124542287 + 0.857143 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 259136 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 107.429-7 chr5 39062807 39062995 + 0.857143 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 11498 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 98.1429 chr10 16734583 16734770 + 0.857143 NA intron (NM_152724, intron 6 of 7) intron (NM_152724, intron 6 of 7) 82748 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 114.571-3 chr13 35187494 35187657 + 0.857143 NA intron (NM_015678, intron 30 of 57) intron (NM_015678, intron 30 of 57) 245288 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 163.857 chr18 71964530 71964831 + 0.857143 NA Intergenic L1MCa|LINE|L1 -182454 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 157.071-4 chr9 12223880 12224244 + 0.857143 NA Intergenic LTR16E2|LTR|ERVL -469323 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 131.429-5 chr14 55726190 55726446 + 0.857143 NA Intergenic L1M5|LINE|L1 -39927 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 201.571 chr1 237810671 237811035 + 0.857143 NA intron (NM_001035, intron 100 of 104) L1ME4b|LINE|L1 -51322 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 187.714 chr4 80425171 80425585 + 0.857143 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 89658 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 154.429-2 chr20 13176173 13176460 + 0.857143 NA Intergenic L1MA5A|LINE|L1 -44958 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 158.286 chr16 11418529 11418845 + 0.857143 NA intron (NM_001370704, intron 42 of 66) intron (NM_001370704, intron 42 of 66) -46573 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 107.714-13 chr4 172086157 172086316 + 0.857143 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -272629 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 114.643 chr1 96638626 96638786 + 0.857143 NA Intergenic L1MD2|LINE|L1 -82899 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 125.214-4 chr21 42939014 42939218 + 0.857143 NA Intergenic Intergenic 11898 NR_049889 100847013 NR_049889 ENSG00000264580 MIR5692B - microRNA 5692b ncRNA 218.857 chr22 27446410 27446711 + 0.857143 NA Intergenic Intergenic 135909 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 154-4 chr6 56465120 56465371 + 0.857143 NA intron (NM_001144770, intron 91 of 94) intron (NM_001144770, intron 91 of 94) -71117 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 174.429 chr11 17391921 17392243 + 0.857143 NA TTS (NM_001351296) TTS (NM_001351296) -2736 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 214.5 chr8 82337456 82337800 + 0.857143 NA Intergenic MER31A|LTR|ERV1 -495342 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 134-8 chr3 29289941 29290135 + 0.857143 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 8726 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 127.714-8 chr2 158099804 158100040 + 0.857143 NA intron (NM_001135098, intron 2 of 8) intron (NM_001135098, intron 2 of 8) -1948 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 200.571 chr5 38313515 38313897 + 0.857143 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -22720 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 127.714-12 chr7 31667160 31667388 + 0.857143 NA Intergenic Intergenic -19743 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 108.857-2 chr10 100477623 100477779 + 0.857143 NA intron (NM_003393, intron 1 of 5) L1MD2|LINE|L1 14692 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 122.5-2 chr16 31675473 31675690 + 0.857143 NA Intergenic L1M4|LINE|L1 -25032 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 201.643 chr16 55183141 55183384 + 0.857143 NA Intergenic HAL1b|LINE|L1 -141297 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 123.714-7 chr6 43578981 43579276 + 0.857143 NA intron (NM_001291969, intron 1 of 8) MER21A|LTR|ERVL 2943 NM_001291969 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 202.714 chr4 171822713 171823046 + 0.857143 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -9272 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 130-4 chr4 135511093 135511419 + 0.857143 NA Intergenic Intergenic 376837 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 206.286 chr10 75893507 75894009 + 0.857143 NA intron (NR_131178, intron 3 of 7) AluSg7|SINE|Alu 110997 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 224.428 chr5 10551506 10551994 + 0.857143 NA Intergenic Intergenic -12320 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 181.429-2 chr1 44865566 44866070 + 0.857143 NA intron (NM_020365, intron 10 of 11) AluSp|SINE|Alu -22565 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 187.286-2 chr2 54206301 54206562 + 0.857143 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 49798 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 220.286-2 chr6 48581527 48581941 + 0.857143 NA Intergenic MLT1B|LTR|ERVL-MaLR -513045 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 122.286-2 chr13 96148249 96148564 + 0.857143 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 57567 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 194.214-2 chr16 9295787 9296386 + 0.857143 NA Intergenic Intergenic -59502 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 123-5 chr12 56768274 56768470 + 0.857143 NA intron (NM_003725, intron 1 of 4) intron (NM_003725, intron 1 of 4) 5048 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 107.143-15 chr4 82776528 82776657 + 0.857143 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) 22204 NM_001037582 79966 Hs.379191 NM_024906 ENSG00000145284 SCD5 ACOD4|FADS4|HSCD5|SCD2|SCD4 stearoyl-CoA desaturase 5 protein-coding 214.929 chr1 181950157 181950568 + 0.857143 NA Intergenic L1MEg|LINE|L1 111350 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 169.286-3 chr3 47743337 47743614 + 0.857143 NA intron (NM_003074, intron 3 of 27) intron (NM_003074, intron 3 of 27) 38418 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 191.143 chr2 181653334 181653642 + 0.857143 NA intron (NR_027690, intron 1 of 11) L1MA6|LINE|L1 3617 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 181.5-4 chr5 31262140 31262656 + 0.857143 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 68712 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 186.857 chr15 66751567 66751979 + 0.857143 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 49537 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 210.571 chr4 32750366 32750810 + 0.857143 NA Intergenic Intergenic 399550 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 139.857 chr10 24818488 24818791 + 0.857143 NA Intergenic Intergenic -94752 NM_001367447 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 105-3 chr10 53946562 53946738 + 0.857143 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -539580 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 159.429 chr10 66203045 66203325 + 0.857143 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 631760 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 229.857 chr8 132517627 132518135 + 0.857143 NA Intergenic Intergenic -36786 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 136.714-3 chr12 85090288 85090524 + 0.857143 NA intron (NM_001079910, intron 11 of 26) MSTA-int|LTR|ERVL-MaLR 54055 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 291.214 chr22 45452373 45452951 + 0.857143 NA Intergenic Intergenic 38969 NM_015653 26150 Hs.475110 NM_015653 ENSG00000128408 RIBC2 C22orf11|TRIB RIB43A domain with coiled-coils 2 protein-coding 181.357-2 chr11 74481220 74481607 + 0.857143 NA Intergenic L1ME4b|LINE|L1 -11972 NM_001319240 100287896 Hs.591971 NM_198519 LOC100287896 - uncharacterized LOC100287896 protein-coding 161.357-8 chr5 21832218 21832520 + 0.857143 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -52085 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 194.357 chr11 112567991 112568528 + 0.857143 NA Intergenic L1MEf|LINE|L1 -12457 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 133.929-3 chr4 124753355 124753622 + 0.857143 NA Intergenic (AATATAT)n|Simple_repeat|Simple_repeat -40756 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 152.357 chr14 45123203 45123435 + 0.857143 NA intron (NM_002013, intron 3 of 6) MER67A|LTR|ERV1 11162 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FKBP prolyl isomerase 3 protein-coding 133.929 chr1 85170804 85171143 + 0.857143 NA intron (NM_032184, intron 4 of 6) L1ME4b|LINE|L1 30043 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 165.357-2 chr6 54381747 54382090 + 0.857143 NA intron (NM_014464, intron 10 of 10) intron (NM_014464, intron 10 of 10) 73477 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 221.786 chr19 35455497 35455830 + 0.857143 NA Intergenic Intergenic 7406 NM_005306 2867 Hs.248056 NM_005306 ENSG00000126262 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 105-18 chr8 37288766 37288897 + 0.857143 NA Intergenic L1ME3G|LINE|L1 205082 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 202.786 chr2 63435540 63436196 + 0.857143 NA intron (NR_148704, intron 9 of 18) intron (NR_148704, intron 9 of 18) 2139 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 152-3 chr15 70936342 70936571 + 0.857143 NA intron (NM_017691, intron 7 of 15) intron (NM_017691, intron 7 of 15) 44013 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 245.571 chr16 49397730 49398089 + 0.857143 NA intron (NM_144602, intron 4 of 4) AluSz6|SINE|Alu 24105 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 160.714-5 chr22 27622115 27622437 + 0.857143 NA Intergenic Charlie15a|DNA|hAT-Charlie 179480 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 135-2 chr10 49064848 49065049 + 0.857143 NA intron (NM_001031746, intron 4 of 7) intron (NM_001031746, intron 4 of 7) 50574 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 127.714-3 chr14 52516780 52517031 + 0.857143 NA intron (NM_001160047, intron 7 of 20) L2a|LINE|L2 35600 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 157 chr16 87402196 87402482 + 0.857143 NA intron (NM_022818, intron 3 of 3) intron (NM_022818, intron 3 of 3) 10003 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 252.857 chr21 18773810 18774279 + 0.857143 NA Intergenic Tigger7|DNA|TcMar-Tigger -14232 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 204-3 chr5 42488147 42488520 + 0.857143 NA intron (NM_001242401, intron 2 of 10) MIR|SINE|MIR -59710 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 118 chr10 64493632 64493915 + 0.857143 NA Intergenic L1MA4|LINE|L1 -331755 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 112.929-4 chr2 116597739 116598027 + 0.857143 NA Intergenic Intergenic -1216808 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 134.429 chr14 38711786 38711982 + 0.857143 NA Intergenic Intergenic -170712 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 147-6 chr8 94917318 94917648 + 0.857143 NA intron (NM_001354534, intron 1 of 8) intron (NM_001354534, intron 1 of 8) 21684 NR_148906 137682 Hs.435500 NM_152416 ENSG00000156170 NDUFAF6 C8orf38|MC1DN17 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 261.929 chr16 9790775 9791312 + 0.857143 NA intron (NM_001134408, intron 11 of 13) MIRb|SINE|MIR -335538 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 122.786 chr11 114295147 114295341 + 0.857143 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) -569 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 188-3 chr5 82698685 82699181 + 0.857143 NA Intergenic MIRb|SINE|MIR -141222 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 128.286-3 chr3 72983566 72983799 + 0.857143 NA Intergenic Intergenic -13061 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 163.643-3 chr9 108195043 108195343 + 0.857143 NA Intergenic L2c|LINE|L2 660793 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 118.571-7 chr6 54924338 54924571 + 0.857143 NA intron (NM_001010872, intron 2 of 4) L2a|LINE|L2 77683 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 115.714-14 chr9 124714155 124714300 + 0.857143 NA intron (NM_033334, intron 2 of 9) L1MB3|LINE|L1 20517 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 105.143-7 chr14 67251084 67251315 + 0.857143 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 9764 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 210.929 chr8 129302347 129302674 + 0.857143 NA Intergenic L1PBa|LINE|L1 -61270 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 180.428 chr5 25914773 25915094 + 0.857143 NA Intergenic L2|LINE|L2 723980 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 155.286-2 chr2 146369969 146370229 + 0.857143 NA Intergenic Intergenic -216958 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 173.786-5 chr7 37887805 37888072 + 0.857143 NA intron (NM_016616, intron 14 of 17) THE1C|LTR|ERVL-MaLR 28879 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 218.143 chr16 50402658 50403171 + 0.857143 NA Intergenic L2b|LINE|L2 -7781 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 137.929-5 chr7 93783497 93783820 + 0.857143 NA Intergenic L1MEg|LINE|L1 66730 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 113.714-8 chr4 15192638 15192923 + 0.857143 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) -147208 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 146.857-2 chr2 67367725 67367973 + 0.857143 NA Intergenic MLT1E2|LTR|ERVL-MaLR -29484 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 123-7 chr17 70759212 70759396 + 0.857143 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 442875 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 101.571-12 chr5 74191215 74191405 + 0.857143 NA Intergenic L1MC1|LINE|L1 117015 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 135-9 chr3 166068255 166068550 + 0.857143 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat -230979 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 187.072 chr3 6870983 6871472 + 0.857143 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 10112 NM_181874 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 177.571 chr7 114103253 114103703 + 0.857143 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 17151 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 128.571-4 chr10 77112990 77113189 + 0.857143 NA intron (NM_001271519, intron 6 of 28) L1MC5a|LINE|L1 -27742 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 178.286 chr2 170999339 170999884 + 0.857143 NA intron (NM_001136555, intron 16 of 18) intron (NM_001136555, intron 16 of 18) 67362 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 112.786-7 chr3 83552555 83552762 + 0.857143 NA Intergenic MLT2B3|LTR|ERVL 1316917 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 106.286-3 chr20 63996877 63997116 + 0.857143 NA intron (NM_012469, intron 6 of 20) L1MB3|LINE|L1 15864 NM_012469 24148 Hs.31334 NM_012469 ENSG00000101161 PRPF6 ANT-1|ANT1|C20orf14|Prp6|RP60|SNRNP102|TOM|U5-102K|hPrp6 pre-mRNA processing factor 6 protein-coding 112.857-11 chr6 53722614 53722858 + 0.857143 NA Intergenic L1MEd|LINE|L1 -56980 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 108.714-7 chr5 55965255 55965473 + 0.857143 NA intron (NM_001364277, intron 4 of 16) L1MC5|LINE|L1 29599 NR_120480 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 118-3 chr2 70352501 70352700 + 0.857143 NA Intergenic L1ME3Cz|LINE|L1 -50533 NM_001329758 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 112.714-2 chr14 87041205 87041391 + 0.857143 NA Intergenic Intergenic 135520 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 135.5-6 chr8 106464275 106464682 + 0.857143 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 16554 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 133.5 chr3 75206180 75206503 + 0.857143 NA Intergenic L1MD|LINE|L1 -8135 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 275.714 chr15 86907544 86907878 + 0.857143 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -25169 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 113-5 chr22 17453540 17453706 + 0.857143 NA intron (NM_001290047, intron 1 of 18) intron (NM_001290047, intron 1 of 18) 84163 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 208.571 chr9 76339341 76339669 + 0.857143 NA intron (NM_001190482, intron 34 of 36) L1M5|LINE|L1 54921 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 105.643-8 chr2 154968109 154968340 + 0.857143 NA Intergenic Intergenic 269529 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 251.429 chr17 82270899 82271238 + 0.857143 NA intron (NM_001363749, intron 1 of 8) intron (NM_001363749, intron 1 of 8) 2632 NM_001893 1453 Hs.631725 NM_001893 ENSG00000141551 CSNK1D ASPS|CKI-delta|CKId|CKIdelta|FASPS2|HCKID casein kinase 1 delta protein-coding 122.643-2 chr5 67118037 67118429 + 0.857143 NA intron (NM_001297651, intron 9 of 25) intron (NM_001297651, intron 9 of 25) 78566 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 179.286-3 chr8 98823309 98823523 + 0.857143 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 2255 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 155.143 chr14 49183888 49184164 + 0.857143 NA Intergenic L1MA8|LINE|L1 402354 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 106.5-9 chr7 15421004 15421191 + 0.857143 NA intron (NM_001004320, intron 4 of 12) intron (NM_001004320, intron 4 of 12) 140918 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 189.143 chr17 80241366 80241810 + 0.857143 NA intron (NM_001166348, intron 8 of 16) L1ME4a|LINE|L1 -19264 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 212.286 chr14 53438780 53439126 + 0.857143 NA Intergenic Intergenic 285599 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 117.143-4 chr14 42884033 42884226 + 0.857143 NA Intergenic Intergenic 1277273 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 123.428 chr1 108783255 108783518 + 0.857143 NA intron (NM_007269, intron 11 of 18) L1ME3|LINE|L1 36712 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 156.571-5 chr8 133928153 133928576 + 0.857143 NA Intergenic Tigger5|DNA|TcMar-Tigger 41868 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 197.143 chr13 65767001 65767440 + 0.857143 NA Intergenic Intergenic -98827 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 165.071-3 chr6 134539660 134540017 + 0.857143 NA intron (NR_125856, intron 1 of 2) intron (NR_125856, intron 1 of 2) 167 NR_125856 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 123-17 chrX 67179925 67180101 + 0.857143 NA Intergenic L1ME1|LINE|L1 -364008 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 121.071 chr10 121095838 121096047 + 0.857143 NA Intergenic Intergenic 244580 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 146.571 chr10 99280005 99280218 + 0.857143 NA Intergenic MIR3|SINE|MIR -44236 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 172-3 chr2 1672937 1673257 + 0.857143 NA intron (NM_012293, intron 9 of 22) Charlie8|DNA|hAT-Charlie 71418 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 167.786-2 chr16 31909502 31909731 + 0.857143 NA intron (NR_049749, intron 4 of 4) L1M1|LINE|L1 35809 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 134.571-4 chr12 42382882 42383213 + 0.857143 NA intron (NM_001364830, intron 4 of 6) MLT1H|LTR|ERVL-MaLR 51249 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 203.071-3 chr8 116830757 116831039 + 0.857143 NA Intergenic Charlie8|DNA|hAT-Charlie -43526 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 123.643-3 chr6 126355767 126355967 + 0.857143 NA intron (NR_104462, intron 2 of 3) intron (NR_104462, intron 2 of 3) 15752 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 97.2857-6 chr7 2786189 2786340 + 0.857143 NA intron (NM_007353, intron 2 of 3) L1MD2|LINE|L1 -23124 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 152.572-2 chr17 77612410 77612764 + 0.857143 NA Intergenic Intergenic 65646 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 183.286-2 chr2 175090264 175090528 + 0.857143 NA intron (NM_001256092, intron 11 of 12) L1MB5|LINE|L1 77313 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 158.929-3 chr17 66873707 66874011 + 0.857143 NA intron (NM_145811, intron 1 of 5) MER103C|DNA|hAT-Charlie 38742 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 157.929 chr10 26844265 26844572 + 0.857143 NA intron (NM_001178116, intron 1 of 11) intron (NM_001178116, intron 1 of 11) 16669 NM_001178119 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 201.714 chr9 83117432 83117953 + 0.857143 NA Intergenic Intergenic -54550 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 140.143-4 chr8 126278005 126278220 + 0.857143 NA Intergenic Intergenic -47383 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 222.286 chr2 58224511 58224868 + 0.857143 NA intron (NM_001114636, intron 4 of 13) intron (NM_001114636, intron 4 of 13) 16691 NR_156742 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 141-3 chr16 62907796 62908095 + 0.857143 NA Intergenic AluJo|SINE|Alu -871507 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 201.143-2 chr7 31609774 31610094 + 0.857143 NA intron (NM_194300, intron 8 of 12) L1M4|LINE|L1 56932 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 113.071-6 chr4 78801807 78801956 + 0.857143 NA intron (NM_017593, intron 1 of 13) L1M4b|LINE|L1 25503 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 158.429 chr1 239342300 239342771 + 0.857143 NA Intergenic Intergenic -44033 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 142-2 chr11 34126312 34126627 + 0.857143 NA intron (NM_001144030, intron 9 of 26) L1ME3Cz|LINE|L1 20840 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 134.143-6 chr8 77810209 77810431 + 0.857143 NA Intergenic L1PA16|LINE|L1 359623 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 237.429 chr5 123887366 123887813 + 0.857143 NA Intergenic Intergenic 342172 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 148.857-6 chr4 65126421 65126668 + 0.857143 NA Intergenic MIR|SINE|MIR -122044 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 153.857-4 chr4 57728276 57728558 + 0.857143 NA Intergenic Intergenic 302545 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 117.571-5 chr16 75313691 75313833 + 0.857143 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -45755 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 139.429-8 chr5 34557670 34558059 + 0.857143 NA Intergenic MIRc|SINE|MIR -98464 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 301.571 chr13 64904772 64905459 + 0.857143 NA Intergenic L1PA16|LINE|L1 -829104 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 97.5715-2 chr1 242084107 242084335 + 0.857143 NA 3' UTR (NM_001195812, exon 9 of 9) 3' UTR (NM_001195812, exon 9 of 9) -85123 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 215 chr1 225709889 225710225 + 0.857143 NA Intergenic Arthur1|DNA|hAT-Tip100 -56934 NM_001008493 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 134.571-2 chr11 82207335 82207775 + 0.857143 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 196358 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 124.643-5 chr18 76525874 76526110 + 0.857143 NA Intergenic Intergenic -2663 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 113.857-10 chr8 38115548 38115863 + 0.857143 NA intron (NM_004674, intron 7 of 15) Charlie8|DNA|hAT-Charlie 9912 NM_001105214 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 117.429-3 chr3 122942311 122942463 + 0.857143 NA intron (NR_046079, intron 4 of 22) intron (NR_046079, intron 4 of 22) 33747 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 147.143-3 chr14 58947698 58948056 + 0.857143 NA intron (NR_110547, intron 3 of 5) intron (NR_110547, intron 3 of 5) 119589 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 171.357-3 chr7 96329501 96329932 + 0.857143 NA Intergenic Intergenic -7569 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 150.929-2 chr11 5017793 5017987 + 0.857143 NA Intergenic L1MC3|LINE|L1 18907 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 185.714 chr2 86301635 86302148 + 0.857143 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 35735 NM_001164732 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 107.714-8 chr20 59208124 59208286 + 0.857143 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 17185 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 223.286 chr9 28959854 28960226 + 0.857143 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -71085 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 207.429-2 chr7 29377945 29378361 + 0.857143 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -101559 NM_001039936 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 218.357 chr2 82622051 82622446 + 0.857143 NA Intergenic LTR12D|LTR|ERV1 -234555 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 189.429-2 chr2 41059622 41059909 + 0.857143 NA Intergenic Intergenic -547330 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 185.429 chr3 20535772 20536034 + 0.857143 NA Intergenic Intergenic 193435 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 250.643 chr16 51901799 51902526 + 0.857143 NA Intergenic MLT1A1|LTR|ERVL-MaLR 139643 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 155.929 chr5 171523183 171523524 + 0.857143 NA Intergenic MIRb|SINE|MIR 103706 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 234.286 chr2 67745424 67745863 + 0.857143 NA Intergenic Intergenic 79919 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 172.286-2 chr3 137173886 137174321 + 0.857143 NA Intergenic Intergenic 216120 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 166.143 chr12 112282640 112282862 + 0.857143 NA intron (NM_001109662, intron 8 of 75) intron (NM_001109662, intron 8 of 75) 99680 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 173-2 chr7 121526643 121526994 + 0.857143 NA Intergenic Intergenic -130450 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 162-2 chr14 68584727 68585072 + 0.857143 NA intron (NM_001321818, intron 10 of 10) MIR3|SINE|MIR 43888 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 118.571-2 chr14 51240040 51240271 + 0.857143 NA promoter-TSS (NM_030755) promoter-TSS (NM_030755) -92 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 235.429-2 chr2 32401578 32402133 + 0.857143 NA intron (NM_016252, intron 8 of 73) intron (NM_016252, intron 8 of 73) 44827 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 151.714 chr1 71470890 71471238 + 0.857143 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 365948 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 181.929 chr2 138130646 138130976 + 0.857143 NA Intergenic MIR|SINE|MIR 28927 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 168.286-2 chr5 95962039 95962291 + 0.857143 NA promoter-TSS (NM_012081) promoter-TSS (NM_012081) 164 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 175.286-5 chr7 43130030 43130271 + 0.857143 NA intron (NR_135295, intron 3 of 6) intron (NR_135295, intron 3 of 6) 12254 NR_135295 100127950 Hs.666610 NR_135295 ENSG00000181211 HECW1-IT1 - HECW1 intronic transcript 1 ncRNA 204.643 chr16 89701812 89702071 + 0.857143 NA promoter-TSS (NM_152339) promoter-TSS (NM_152339) -236 NM_152339 124044 Hs.374556 NM_152339 ENSG00000158792 SPATA2L C16orf76|tamo spermatogenesis associated 2 like protein-coding 195.429 chr8 78995293 78995647 + 0.857143 NA Intergenic L1MA4|LINE|L1 157941 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 149.857-4 chr2 20335727 20335974 + 0.857143 NA intron (NM_001352920, intron 1 of 19) intron (NM_001352920, intron 1 of 19) -8464 NM_001282791 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 105.429-2 chr11 36158062 36158225 + 0.857143 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -80242 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 159.143-3 chr5 26409165 26409375 + 0.857143 NA Intergenic Intergenic 629316 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 138.643-3 chr2 28497182 28497370 + 0.857143 NA intron (NM_001170585, intron 1 of 56) MER89|LTR|ERV1 1205 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 105.143-16 chr8 99518404 99518633 + 0.857143 NA intron (NM_017890, intron 29 of 61) intron (NM_017890, intron 29 of 61) 18212 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 122-5 chr14 27027833 27028072 + 0.857143 NA Intergenic MIRc|SINE|MIR 119310 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 202.5 chr16 60606468 60606782 + 0.857143 NA Intergenic Intergenic -246832 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 147.929-4 chr8 125934119 125934331 + 0.857143 NA intron (NR_038447, intron 3 of 3) intron (NR_038447, intron 3 of 3) 16972 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 156.143 chr13 88571028 88571380 + 0.857143 NA Intergenic L1MCb|LINE|L1 30375 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 150.357-2 chr22 49083190 49083527 + 0.857143 NA Intergenic Intergenic 216588 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 273.643-2 chr21 45469936 45470345 + 0.857143 NA intron (NM_130445, intron 3 of 42) intron (NM_130445, intron 3 of 42) -8126 NR_106873 102465489 NR_106873 ENSG00000275167 MIR6815 hsa-mir-6815 microRNA 6815 ncRNA 193.714-2 chr8 109562246 109562875 + 0.857143 NA intron (NM_198120, intron 6 of 6) intron (NM_198120, intron 6 of 6) 21934 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 138.429-2 chr16 84153063 84153309 + 0.857143 NA intron (NM_178452, intron 3 of 11) intron (NM_178452, intron 3 of 11) -5854 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 131.143-2 chr16 77329949 77330202 + 0.857143 NA intron (NM_199355, intron 12 of 22) MER5A|DNA|hAT-Charlie 104959 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 194.571-2 chr8 83100736 83101157 + 0.857143 NA Intergenic Intergenic 188842 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 105-16 chr7 31816239 31816713 + 0.857143 NA intron (NM_001191059, intron 15 of 18) MIRb|SINE|MIR 129261 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 133.429-4 chr2 222182459 222182737 + 0.857143 NA Intergenic Intergenic -115549 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 114.571-2 chr12 39249856 39250085 + 0.857143 NA Intergenic ERVL-B4-int|LTR|ERVL 193150 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 208.286 chr10 37822406 37822652 + 0.857143 NA intron (NM_001352493, intron 5 of 6) intron (NM_001352493, intron 5 of 6) -27354 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 123-12 chr3 185599100 185599302 + 0.857143 NA intron (NM_021627, intron 4 of 16) intron (NM_021627, intron 4 of 16) 12906 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 115.071-4 chr17 72419350 72419621 + 0.857143 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 76674 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 129.714 chr10 66491598 66492003 + 0.857143 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -434236 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 103.714-23 chr9 134902631 134902856 + 0.857143 NA TTS (NM_002003) TTS (NM_002003) 15169 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 216 chr2 160321364 160321744 + 0.857143 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) -49659 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 163.429 chr17 21001731 21002337 + 0.857143 NA 3' UTR (NM_015276, exon 13 of 13) 3' UTR (NM_015276, exon 13 of 13) 40977 NM_015276 23326 Hs.462492 NM_015276 ENSG00000124422 USP22 USP3L ubiquitin specific peptidase 22 protein-coding 240 chr21 28157716 28158227 + 0.857143 NA intron (NR_126012, intron 5 of 5) MLT1J2-int|LTR|ERVL-MaLR 67568 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 125.143-7 chr3 36092373 36092594 + 0.857143 NA Intergenic Intergenic -288004 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 161.429 chr14 81219293 81219667 + 0.857143 NA intron (NM_201595, intron 1 of 8) intron (NM_201595, intron 1 of 8) 1479 NM_015859 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 101.571-11 chr4 116458995 116459220 + 0.857143 NA Intergenic Intergenic 159382 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 116.429-5 chr3 57767820 57768057 + 0.857143 NA intron (NM_001304420, intron 1 of 21) intron (NM_001304420, intron 1 of 21) 10682 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 269.143 chr14 80204772 80205288 + 0.857143 NA intron (NM_001324462, intron 2 of 2) intron (NM_001324462, intron 2 of 2) -6389 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 138.429-7 chr6 56665036 56665207 + 0.857143 NA intron (NM_001144770, intron 7 of 94) intron (NM_001144770, intron 7 of 94) -22232 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 206.572 chr2 11073538 11073817 + 0.857143 NA Intergenic L1ME3G|LINE|L1 58499 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 178 chr1 43946672 43946958 + 0.857143 NA promoter-TSS (NM_014652) promoter-TSS (NM_014652) -135 NM_014652 9670 Hs.158497 NM_014652 ENSG00000117408 IPO13 IMP13|KAP13|LGL2|RANBP13 importin 13 protein-coding 236.786 chr10 25734415 25734872 + 0.857143 NA Intergenic L1MB5|LINE|L1 82931 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 200.071 chr13 44481295 44481772 + 0.857143 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -7232 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 133.714-11 chr8 105750826 105751083 + 0.857143 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 309549 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 304 chr5 129242802 129243298 + 0.857143 NA Intergenic Intergenic 145362 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 115.071 chr10 51290968 51291151 + 0.857143 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -8514 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 173 chr17 47181491 47181859 + 0.857143 NA intron (NM_001256, intron 1 of 18) intron (NM_001256, intron 1 of 18) 7620 NM_001256 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 220.429-2 chr5 64800350 64800681 + 0.857143 NA intron (NM_001297645, intron 8 of 10) intron (NM_001297645, intron 8 of 10) 31585 NM_005869 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 145.714-2 chr12 81979365 81979549 + 0.857143 NA intron (NR_110089, intron 2 of 2) intron (NR_110089, intron 2 of 2) 25738 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 126.429-5 chr7 37373263 37373435 + 0.857143 NA intron (NM_001206480, intron 1 of 21) AluSx|SINE|Alu -19681 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 130.214-6 chr8 124511610 124511870 + 0.857143 NA intron (NM_001317891, intron 3 of 8) intron (NM_001317891, intron 3 of 8) -3164 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 168.286-3 chr8 126999225 126999438 + 0.857143 NA Intergenic MIRb|SINE|MIR -13823 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 167.429 chr14 52341552 52341784 + 0.857143 NA Intergenic Intergenic 27356 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 164.286 chr14 69755267 69755502 + 0.857143 NA Intergenic MLT1O|LTR|ERVL-MaLR -11758 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 165.571 chr18 79122937 79123335 + 0.857143 NA intron (NR_148360, intron 4 of 31) L1MB7|LINE|L1 53742 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 114.571-10 chr22 29873782 29873997 + 0.857143 NA Intergenic AluJr|SINE|Alu -9280 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 168.643-6 chr8 136784235 136784563 + 0.857143 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 253601 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 144.857-3 chr2 197096551 197096818 + 0.857143 NA intron (NM_001367496, intron 10 of 27) intron (NM_001367496, intron 10 of 27) -101307 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 258.429 chr5 11268881 11269371 + 0.857143 NA intron (NM_001288715, intron 8 of 20) MIR|SINE|MIR 319791 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 163.714-3 chr4 94173965 94174298 + 0.857143 NA intron (NR_125922, intron 1 of 8) L2b|LINE|L2 33425 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 228.857 chr11 103958748 103959066 + 0.857143 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -77733 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 156 chr2 159120884 159121220 + 0.857143 NA intron (NM_001350063, intron 4 of 24) MLT1D|LTR|ERVL-MaLR -65783 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 185-2 chr8 86486602 86486928 + 0.857143 NA intron (NM_001286719, intron 3 of 8) intron (NM_001286719, intron 3 of 8) 21921 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 209.643 chr14 37456028 37456954 + 0.857143 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 138758 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 96.5714-4 chr3 157132632 157132799 + 0.857143 NA Intergenic MIRb|SINE|MIR -9713 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 147.786-2 chr3 96498457 96498768 + 0.857143 NA Intergenic L1MCb|LINE|L1 138648 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 184.071-5 chr7 11375322 11375667 + 0.857143 NA 3' UTR (NM_015204, exon 27 of 27) 3' UTR (NM_015204, exon 27 of 27) 401622 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 127.714-11 chr5 149105740 149106073 + 0.857143 NA intron (NR_122044, intron 2 of 2) L1ME2|LINE|L1 -35541 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 140.786-4 chr5 166486688 166487033 + 0.857143 NA Intergenic MER58B|DNA|hAT-Charlie 439510 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 196.714 chr14 95825826 95826267 + 0.857143 NA Intergenic L2a|LINE|L2 -50346 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 135.429 chr12 127585940 127586228 + 0.857143 NA Intergenic L1PA15|LINE|L1 50383 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 103.429-6 chr2 81803925 81804085 + 0.857143 NA Intergenic L1MA7|LINE|L1 -337059 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 165.429-2 chr1 88446668 88446907 + 0.857143 NA Intergenic Intergenic -237357 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 108.429 chr10 74836239 74836438 + 0.857143 NA intron (NM_001370142, intron 1 of 16) L1MB5|LINE|L1 9738 NM_012330 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 193.071 chr9 93109077 93109419 + 0.857143 NA intron (NR_160513, intron 3 of 6) intron (NR_160513, intron 3 of 6) 13031 NR_134467 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 169.5 chr7 52200248 52200645 + 0.857143 NA Intergenic Intergenic -807190 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 145.714-3 chr16 73635847 73636197 + 0.857143 NA Intergenic Intergenic 249217 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 155.429 chr11 78298961 78299296 + 0.857143 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 42752 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 101.071 chr15 53075638 53075833 + 0.857143 NA Intergenic MamTip2|DNA|hAT-Tip100 -40630 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 141.714-7 chr8 79649686 79649981 + 0.857143 NA intron (NM_007029, intron 3 of 4) intron (NM_007029, intron 3 of 4) 38716 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 134.214-7 chr8 130479322 130479552 + 0.857143 NA Intergenic MIRc|SINE|MIR -35763 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 227.857 chr7 46687055 46687554 + 0.857143 NA TTS (NR_134575) TTS (NR_134575) 9818 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 142.286-4 chr4 44635822 44636160 + 0.857143 NA exon (NM_182592, exon 3 of 6) exon (NM_182592, exon 3 of 6) 15650 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 125.143-5 chr15 62020001 62020173 + 0.857143 NA intron (NM_001018088, intron 9 of 81) intron (NM_001018088, intron 9 of 81) 40360 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 154.714-6 chr7 23109457 23109718 + 0.857143 NA intron (NM_018846, intron 1 of 10) Tigger12A|DNA|TcMar-Tigger 2926 NM_018846 55975 Hs.654817 NM_018846 ENSG00000122550 KLHL7 CISS3|KLHL6|SBBI26 kelch like family member 7 protein-coding 222.286-3 chr20 49121675 49121986 + 0.857143 NA intron (NM_004602, intron 8 of 13) MER63D|DNA|hAT-Blackjack 66540 NM_001322932 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 125.571 chr1 1813213 1813362 + 0.857143 NA intron (NM_001282538, intron 3 of 9) AluSz|SINE|Alu -33256 NM_001198994 65220 Hs.654792 NM_023018 ENSG00000008130 NADK dJ283E3.1 NAD kinase protein-coding 102.929-5 chr21 21834284 21834657 + 0.857143 NA Intergenic L1MEc|LINE|L1 87485 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 137.714-4 chr2 67581061 67581320 + 0.857143 NA Intergenic Intergenic 183857 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 160-3 chr6 154561771 154561997 + 0.857143 NA Intergenic ERVL-B4-int|LTR|ERVL -51199 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 170.571 chr20 62506410 62506614 + 0.857143 NA Intergenic Intergenic -30517 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 107.357-15 chr7 108606930 108607160 + 0.857143 NA Intergenic Intergenic 37171 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 140.143 chr5 43974651 43974904 + 0.857143 NA Intergenic Intergenic -371547 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 147.857-5 chr18 13595914 13596272 + 0.857143 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -15021 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 169.929-2 chr7 87958697 87959124 + 0.857143 NA intron (NM_001324421, intron 2 of 28) L1ME3Cz|LINE|L1 24659 NM_001324417 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 116-8 chr8 48769867 48770084 + 0.857143 NA Intergenic Intergenic -34664 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 147.143-4 chr22 45343950 45344371 + 0.857143 NA TTS (NM_001291501) TTS (NM_001291501) 25717 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 101.857-8 chr3 98778949 98779156 + 0.857143 NA intron (NM_001271147, intron 6 of 9) MER91C|DNA|hAT-Tip100 15745 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 135-8 chr18 66648668 66648872 + 0.857143 NA Intergenic Intergenic -44680 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 162.857-4 chr8 100149866 100150119 + 0.857143 NA promoter-TSS (NM_005034) promoter-TSS (NM_005034) -644 NM_005034 5440 Hs.351475 NM_005034 ENSG00000147669 POLR2K ABC10-alpha|RPABC4|RPB10alpha|RPB12|RPB7.0|hRPB7.0|hsRPB10a RNA polymerase II subunit K protein-coding 148.071-3 chr14 64197671 64198159 + 0.857143 NA intron (NM_015180, intron 99 of 114) intron (NM_015180, intron 99 of 114) -16229 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 226.714 chr4 33079557 33080218 + 0.857143 NA Intergenic Intergenic 728849 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 120.857-7 chr7 36125932 36126182 + 0.857143 NA Intergenic L1PA6|LINE|L1 -27197 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 162.429 chr14 56097658 56098034 + 0.857143 NA Intergenic Intergenic -20565 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 166.286-3 chr4 39535701 39535956 + 0.857143 NA intron (NR_047679, intron 2 of 4) Charlie2a|DNA|hAT-Charlie 7989 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 176.857 chr3 190642945 190643228 + 0.857143 NA intron (NM_001364881, intron 9 of 11) L2c|LINE|L2 129001 NR_157353 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 183.143-3 chr8 82466195 82466558 + 0.857143 NA Intergenic L1PB1|LINE|L1 -445728 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 134.357 chr11 134612442 134612740 + 0.857143 NA Intergenic Intergenic -123354 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 99.8571 chr10 31480237 31480412 + 0.857143 NA intron (NM_001323678, intron 2 of 6) intron (NM_001323678, intron 2 of 6) -80569 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 112.072 chr7 3572335 3572650 + 0.857143 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 271240 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 222.429 chr8 76098569 76098908 + 0.857143 NA Intergenic L1MC|LINE|L1 -307916 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 173.714-2 chr4 132640702 132640970 + 0.857143 NA intron (NR_126401, intron 1 of 3) L1MA4|LINE|L1 49747 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 100.857-12 chr3 145693825 145693960 + 0.857143 NA Intergenic Intergenic 375293 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 220.5 chr12 61368500 61368810 + 0.857143 NA Intergenic Intergenic 824184 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 220.857 chr17 64505404 64505922 + 0.857143 NA intron (NM_004396, intron 1 of 12) CpG 274 NM_001320597 1655 Hs.279806 NM_004396 ENSG00000108654 DDX5 G17P1|HLR1|HUMP68|p68 DEAD-box helicase 5 protein-coding 114-3 chr11 44419888 44420110 + 0.857143 NA Intergenic Intergenic -109860 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 120.5 chr15 64542388 64542650 + 0.857143 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 43099 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 104.571-10 chr19 51480755 51480959 + 0.857143 NA intron (NM_001278392, intron 2 of 5) MIRb|SINE|MIR 2214 NM_001278392 729767 Hs.653111 NM_001080405 ENSG00000213822 CEACAM18 - carcinoembryonic antigen related cell adhesion molecule 18 protein-coding 120.286-5 chr7 107543084 107543269 + 0.857143 NA intron (NM_181733, intron 5 of 20) L1M3e|LINE|L1 -20781 NR_073003 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 118.571-9 chr6 149040743 149041011 + 0.857143 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -8216 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 99.4286-10 chr8 112811142 112811380 + 0.857143 NA intron (NM_001363185, intron 10 of 66) MER67C|LTR|ERV1 167768 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 96.8572-3 chr12 7385591 7385783 + 0.857143 NA intron (NM_001297650, intron 8 of 19) L1MA1|LINE|L1 58498 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 193.714 chr6 84459585 84460064 + 0.857143 NA intron (NR_132100, intron 2 of 4) intron (NR_132100, intron 2 of 4) 15105 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 132.571-10 chr5 164037895 164038143 + 0.857143 NA Intergenic Intergenic 429383 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 124.286-2 chr10 96877949 96878176 + 0.857143 NA intron (NM_001170766, intron 2 of 8) L1MC5a|LINE|L1 45117 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 110.286-5 chr2 191129912 191130085 + 0.857143 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 20996 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 168.857-5 chr20 52531146 52531380 + 0.857143 NA Intergenic L2a|LINE|L2 -89575 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 153.429-3 chr5 43346876 43347333 + 0.857143 NA Intergenic Intergenic -33692 NM_001324222 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 192.571 chr18 53912444 53912819 + 0.857143 NA Intergenic L1MCa|LINE|L1 309781 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 157.571-3 chr6 72907308 72907745 + 0.857143 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 60227 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 100.071-4 chr20 45417714 45418035 + 0.857143 NA intron (NR_047692, intron 2 of 10) intron (NR_047692, intron 2 of 10) 1733 NR_047694 51604 Hs.437388 NM_015937 ENSG00000124155 PIGT CGI-06|MCAHS3|NDAP|PNH2 phosphatidylinositol glycan anchor biosynthesis class T protein-coding 131.429-6 chr15 59024929 59025204 + 0.857143 NA intron (NM_001270530, intron 1 of 13) L1MB3|LINE|L1 36920 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 121.714-7 chr8 92084759 92084921 + 0.857143 NA intron (NM_001198627, intron 2 of 13) intron (NM_001198627, intron 2 of 13) 10390 NM_001198630 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 155 chr1 15200512 15200759 + 0.857143 NA intron (NR_135082, intron 1 of 2) MLT1B|LTR|ERVL-MaLR -29011 NM_001278501 727684 Hs.667584 NM_001278501 C1orf195 - chromosome 1 open reading frame 195 protein-coding 251.071 chr13 104729358 104729832 + 0.857143 NA Intergenic Charlie25|DNA|hAT-Charlie -736272 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 112.929-7 chr3 36048191 36048351 + 0.857143 NA Intergenic L1MA4A|LINE|L1 303795 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 150.214-2 chr18 3493453 3493690 + 0.857143 NA Intergenic Intergenic 27321 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 136.286 chr1 188290926 188291260 + 0.857143 NA Intergenic THE1C|LTR|ERVL-MaLR 847465 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 133.357-3 chr4 107184567 107184915 + 0.857143 NA Intergenic Intergenic -148428 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 125.143-6 chr15 98217090 98217418 + 0.857143 NA Intergenic MIRb|SINE|MIR 114304 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 99.7143-2 chr4 12169211 12169351 + 0.857143 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -54170 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 154.5-5 chr8 82295641 82295840 + 0.857143 NA Intergenic Intergenic -453454 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 192.571-3 chr5 51207947 51208316 + 0.857143 NA Intergenic Intergenic 175201 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 136.071-7 chr3 12533266 12533424 + 0.857143 NA TTS (NM_001321279) TTS (NM_001321279) 12119 NM_001195279 100129480 Hs.572974 NM_001195279 ENSG00000225526 MKRN2OS C3orf83|MKRN2-AS1 MKRN2 opposite strand protein-coding 145.143-2 chr2 11209605 11209925 + 0.857143 NA intron (NM_001321643, intron 18 of 32) intron (NM_001321643, intron 18 of 32) 54298 NM_001282711 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 141.571-3 chr5 165645689 165646029 + 0.857143 NA Intergenic Intergenic 1175580 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 101.857-3 chr15 95099154 95099322 + 0.857143 NA Intergenic L1MB7|LINE|L1 227862 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 172-5 chrX 54479015 54479247 + 0.857143 NA intron (NM_004463, intron 1 of 17) MamTip1|DNA|hAT-Tip100 17103 NM_004463 2245 Hs.709201 NM_004463 ENSG00000102302 FGD1 AAS|FGDY|MRXS16|ZFYVE3 FYVE, RhoGEF and PH domain containing 1 protein-coding 169.714-2 chr6 159725846 159726268 + 0.857143 NA promoter-TSS (NM_001270532) promoter-TSS (NM_001270532) 893 NM_001322820 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 173.786-2 chr2 51653282 51653607 + 0.857143 NA intron (NR_135237, intron 5 of 10) L1MA9|LINE|L1 620843 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 168-2 chr16 65697762 65698033 + 0.857143 NA Intergenic Intergenic -121597 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 146.571-4 chr22 34776353 34776597 + 0.857143 NA intron (NR_138042, intron 3 of 4) L2c|LINE|L2 221441 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 120.071 chr11 64774254 64774519 + 0.857143 NA intron (NM_201995, intron 2 of 13) intron (NM_201995, intron 2 of 13) 3375 NM_001178031 7536 Hs.502829 NM_004630 ENSG00000168066 SF1 BBP|D11S636|MBBP|ZCCHC25|ZFM1|ZNF162 splicing factor 1 protein-coding 193.286 chr8 135102214 135102508 + 0.857143 NA Intergenic Intergenic -131770 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 132-6 chr4 52673690 52673994 + 0.857143 NA Intergenic L1ME3A|LINE|L1 14436 NR_125363 643783 Hs.631514 NR_125363 ENSG00000248866 USP46-AS1 - USP46 antisense RNA 1 ncRNA 195.929-2 chr6 103056116 103056476 + 0.857143 NA Intergenic L1PREC2|LINE|L1 1657311 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 170.429-6 chr7 34286834 34287097 + 0.857143 NA Intergenic Intergenic -371253 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 168-4 chr7 46123508 46123820 + 0.857143 NA Intergenic L1MA8|LINE|L1 -202392 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 162.857-5 chr8 124139772 124140024 + 0.857143 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 31624 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 184.929 chr5 43768240 43768559 + 0.857143 NA Intergenic Intergenic -165169 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 220.5-2 chr15 84990172 84990732 + 0.857143 NA intron (NM_173454, intron 1 of 20) L1ME2z|LINE|L1 8478 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 180.571 chr18 4889486 4889876 + 0.857143 NA Intergenic Intergenic -191501 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 139.286-6 chr2 139683727 139684133 + 0.857143 NA Intergenic Intergenic 786606 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 136.929 chr13 104885146 104885428 + 0.857143 NA Intergenic L1PA11|LINE|L1 -580580 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 115.214-3 chr21 16318288 16318443 + 0.857143 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -33597 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 101.929-2 chr17 64328858 64329058 + 0.857143 NA intron (NM_000442, intron 15 of 15) intron (NM_000442, intron 15 of 15) 61902 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 173.357 chr3 63056270 63056578 + 0.857143 NA Intergenic MLT1L|LTR|ERVL-MaLR -46264 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 134.857-5 chr2 37919445 37919763 + 0.857143 NA Intergenic Intergenic -5683 NM_001322212 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 143.643 chr1 58046315 58046518 + 0.857143 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 185835 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 112.643-7 chr8 85121826 85122013 + 0.857143 NA intron (NM_033402, intron 6 of 18) L1ME2z|LINE|L1 14681 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 127.214-4 chr8 129115855 129116054 + 0.857143 NA Intergenic Intergenic 125286 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 100.714-14 chr6 28189065 28189320 + 0.857143 NA Intergenic Intergenic 27431 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 205.929 chr18 52857716 52858117 + 0.857143 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -379185 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 157.286 chr10 18829410 18829730 + 0.857143 NA Intergenic Intergenic 170139 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 113.857-2 chr13 82430966 82431167 + 0.857143 NA Intergenic Intergenic -1204083 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 152.071 chr11 38377862 38378039 + 0.857143 NA Intergenic L1ME2|LINE|L1 268406 NR_120554 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 151.429-4 chr7 47489934 47490135 + 0.857143 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -25231 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 151.429-3 chr7 41703145 41703407 + 0.857143 NA promoter-TSS (NM_002192) promoter-TSS (NM_002192) -186 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 191.429-2 chr3 135265701 135266153 + 0.857143 NA Intergenic L2c|LINE|L2 470667 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 144.571-3 chr8 119853638 119854088 + 0.857143 NA intron (NM_024094, intron 1 of 8) intron (NM_024094, intron 1 of 8) 2031 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 140.286-4 chrX 46245550 46245771 + 0.857143 NA Intergenic L1MCa|LINE|L1 82014 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 171.857-3 chr9 88275763 88276276 + 0.857143 NA Intergenic Intergenic -112425 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 162.071 chr22 27878390 27878626 + 0.857143 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 40706 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 151.571-3 chr3 30216720 30217032 + 0.857143 NA Intergenic Intergenic -282720 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 117.857-6 chr15 56741158 56741622 + 0.857143 NA Intergenic L1P4|LINE|L1 -7304 NM_017661 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 142-3 chr7 29287663 29287931 + 0.857143 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -78827 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 168.643-5 chr6 76696329 76696578 + 0.857143 NA Intergenic Intergenic -102830 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 106.714-14 chr7 92145924 92146158 + 0.857143 NA intron (NM_001161528, intron 4 of 4) intron (NM_001161528, intron 4 of 4) -11296 NM_001146152 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 219.214 chr20 59260369 59260732 + 0.857143 NA Intergenic Intergenic -40061 NM_207034 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 127.714-6 chr18 3278989 3279271 + 0.857143 NA TTS (NM_001144945) TTS (NM_001144945) 16411 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 248.357 chr5 165724057 165724545 + 0.857143 NA Intergenic Intergenic 1202069 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 125.429 chr15 38468464 38468630 + 0.857143 NA intron (NM_173611, intron 3 of 7) intron (NM_173611, intron 3 of 7) 14420 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 110.571 chr11 115492190 115492407 + 0.857143 NA intron (NM_001098517, intron 1 of 8) L1MC4|LINE|L1 12117 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 133.286-6 chr17 62897618 62897854 + 0.857143 NA Intergenic Intergenic -46479 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 147-3 chr15 98302112 98302317 + 0.857143 NA Intergenic Intergenic 29344 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 135.429-3 chr3 116142043 116142270 + 0.857143 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -217868 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 164.571-8 chr7 6072508 6072751 + 0.857143 NA Intergenic MSTC|LTR|ERVL-MaLR -13400 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 115.286 chr1 207783400 207783583 + 0.857143 NA intron (NM_172352, intron 8 of 11) intron (NM_172352, intron 8 of 11) 18448 NR_029832 407026 NR_029832 ENSG00000284214 MIR29C MIRN29C|miRNA29C|mir-29c microRNA 29c ncRNA 195.143 chr1 214720714 214721185 + 0.857143 NA Intergenic Intergenic 117754 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 164.286-2 chr2 108270232 108270583 + 0.857143 NA Intergenic Intergenic -18488 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 175.643 chr7 25366823 25367199 + 0.857143 NA Intergenic Intergenic -138525 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 194.357-3 chr7 7503224 7503503 + 0.857143 NA intron (NM_001037763, intron 11 of 34) MIR|SINE|MIR 32510 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 202.714-2 chr6 751351 751727 + 0.857143 NA Intergenic L1M5|LINE|L1 -58398 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 128.857-6 chr8 66667385 66667721 + 0.857143 NA promoter-TSS (NM_025054) promoter-TSS (NM_025054) -43 NR_161216 56260 Hs.661238 NM_019607 ENSG00000213865 C8orf44 - chromosome 8 open reading frame 44 ncRNA 142.714-5 chr4 30964681 30964986 + 0.857143 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -206311 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 111.286-6 chr3 46098329 46098513 + 0.857143 NA Intergenic Intergenic -70938 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 135.714 chr12 50882723 50883039 + 0.857143 NA intron (NM_182559, intron 3 of 4) L1M5|LINE|L1 39955 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 204.071 chr3 83370247 83370497 + 0.857143 NA Intergenic L1MC1|LINE|L1 1384230 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 150.929-4 chr20 35318129 35318367 + 0.857143 NA intron (NM_001184977, intron 5 of 7) MIR3|SINE|MIR -25823 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 220.286 chr20 51771254 51771780 + 0.857143 NA Intergenic AluY|SINE|Alu -3127 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 129.714-2 chr12 94471712 94471961 + 0.857143 NA Intergenic Intergenic -11382 NM_001368039 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 181.286 chr1 70343535 70343765 + 0.857143 NA intron (NM_030816, intron 1 of 12) AluSz6|SINE|Alu 11072 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 130.857-6 chr5 39336204 39336448 + 0.857143 NA intron (NM_001737, intron 4 of 10) Charlie2b|DNA|hAT-Charlie 28169 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 114.714-3 chr5 15630837 15631034 + 0.857143 NA intron (NM_001278317, intron 2 of 3) MIR|SINE|MIR -15933 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 134.286-4 chr7 31445581 31445908 + 0.857143 NA Intergenic Intergenic -68327 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 184.286-2 chr10 125230542 125230777 + 0.857143 NA Intergenic AluSx1|SINE|Alu -69629 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 102.571-6 chr3 129180166 129180372 + 0.785714 NA intron (NM_001127196, intron 1 of 4) intron (NM_001127196, intron 1 of 4) 3627 NM_001127194 7555 Hs.518249 NM_003418 ENSG00000169714 CNBP CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9 CCHC-type zinc finger nucleic acid binding protein protein-coding 108-10 chr2 182359597 182359772 + 0.785714 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 67364 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 136.714-5 chr14 67198484 67198716 + 0.785714 NA intron (NM_173526, intron 3 of 8) intron (NM_173526, intron 3 of 8) 9160 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 109.571-8 chr9 135062687 135062856 + 0.785714 NA Intergenic Intergenic -12734 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 115.286-10 chr9 95167799 95167960 + 0.785714 NA intron (NM_001243744, intron 6 of 13) L1MB2|LINE|L1 -81785 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 152.786-2 chr3 44939698 44940015 + 0.785714 NA intron (NR_146162, intron 3 of 6) intron (NR_146162, intron 3 of 6) 36318 NM_016598 51304 Hs.61430 NM_016598 ENSG00000163812 ZDHHC3 DHHC-3|DHHC3|GODZ|ZNF373 zinc finger DHHC-type containing 3 protein-coding 118.714-4 chr12 9700222 9700560 + 0.785714 NA TTS (NR_036693) TTS (NR_036693) 30678 NM_001197319 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 111.571-3 chr3 135989044 135989287 + 0.785714 NA intron (NM_001190447, intron 1 of 12) intron (NM_001190447, intron 1 of 12) 23437 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 123.714-2 chr21 26964967 26965178 + 0.785714 NA intron (NM_007038, intron 1 of 7) intron (NM_007038, intron 1 of 7) 2016 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 123.857-4 chr2 119732608 119732853 + 0.785714 NA Intergenic Intergenic -27192 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 220.357 chr4 32029862 32030210 + 0.785714 NA intron (NR_125936, intron 1 of 2) LTR33A|LTR|ERVL -7614 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 134.857-11 chr9 27667312 27667553 + 0.785714 NA Intergenic Tigger1|DNA|TcMar-Tigger -93566 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 145.357 chr14 98478449 98478885 + 0.785714 NA Intergenic Intergenic -232946 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 169-2 chr5 101856648 101856952 + 0.785714 NA Intergenic Intergenic 439484 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 167.786-4 chr8 75148112 75148492 + 0.785714 NA Intergenic Intergenic 130179 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 130.429-6 chr7 6412947 6413230 + 0.785714 NA intron (NM_001142936, intron 9 of 12) intron (NM_001142936, intron 9 of 12) 34866 NM_139179 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 119.143-4 chr14 39394719 39395012 + 0.785714 NA Intergenic LTR41B|LTR|ERVL 37635 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 104.571-5 chr11 111813794 111814044 + 0.785714 NA intron (NR_147984, intron 13 of 15) L1ME3A|LINE|L1 -47530 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 109.857-9 chr9 34361154 34361353 + 0.785714 NA Intergenic Intergenic 15645 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 208.286-2 chr18 2612809 2613162 + 0.785714 NA intron (NM_006101, intron 16 of 16) intron (NM_006101, intron 16 of 16) 41428 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 139.5-4 chr8 140234001 140234244 + 0.785714 NA intron (NM_001160372, intron 16 of 22) MER1B|DNA|hAT-Charlie -133587 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 151.5 chr1 172297837 172298038 + 0.785714 NA intron (NR_146559, intron 16 of 20) L1MEj|LINE|L1 -122748 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 277.357 chr6 136226494 136227211 + 0.785714 NA Intergenic MIR|SINE|MIR 23459 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 163.857-3 chr5 68671918 68672179 + 0.785714 NA Intergenic Intergenic 357879 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 185.714-3 chr22 34547211 34547843 + 0.785714 NA Intergenic L1P5|LINE|L1 450389 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 218.286 chr8 118215038 118215367 + 0.785714 NA intron (NM_001101676, intron 4 of 4) MER58A|DNA|hAT-Charlie -103383 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 207.071 chr1 59705356 59705927 + 0.785714 NA intron (NM_001350790, intron 15 of 16) MIRb|SINE|MIR 27655 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 122.286-3 chr2 66901528 66901797 + 0.785714 NA Intergenic Intergenic -2774 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 136.286-6 chr3 30227299 30227706 + 0.785714 NA Intergenic Intergenic -291366 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 222.5-2 chr5 21040938 21041438 + 0.785714 NA Intergenic L1MEg|LINE|L1 -418292 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 147.429-3 chr13 28226913 28227148 + 0.785714 NA intron (NM_175854, intron 6 of 18) intron (NM_175854, intron 6 of 18) -87856 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 131.429-3 chr11 131178741 131179074 + 0.785714 NA Intergenic Intergenic -191708 NM_001352001 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 122.571-4 chr3 37823838 37824196 + 0.785714 NA TTS (NM_002207) TTS (NM_002207) 37763 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 141-2 chr12 26194612 26194803 + 0.785714 NA promoter-TSS (NM_001135823) promoter-TSS (NM_001135823) -629 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 173.929-2 chr21 28182757 28183066 + 0.785714 NA intron (NR_126012, intron 3 of 5) THE1D-int|LTR|ERVL-MaLR 45756 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 104.571-12 chr3 107882339 107882571 + 0.785714 NA promoter-TSS (NR_015394) promoter-TSS (NR_015394) -750 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 178.143 chr10 122449158 122449462 + 0.785714 NA Intergenic L1M5|LINE|L1 -5343 NM_001099667 387715 Hs.120359 NM_001099667 ENSG00000254636 ARMS2 ARMD8 age-related maculopathy susceptibility 2 protein-coding 119.929-3 chr19 41039908 41040116 + 0.785714 NA Intergenic L1MB8|LINE|L1 -48439 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 148.286-2 chr11 82556889 82557180 + 0.785714 NA Intergenic Intergenic -153121 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 200.857 chr22 17093003 17093347 + 0.785714 NA intron (NM_014339, intron 1 of 12) HAL1|LINE|L1 8216 NM_001289905 23765 Hs.48353 NM_014339 ENSG00000177663 IL17RA CANDF5|CD217|CDw217|IL-17RA|IL17R|IMD51|hIL-17R interleukin 17 receptor A protein-coding 229.714 chr5 72756232 72756615 + 0.785714 NA Intergenic MIRb|SINE|MIR -60168 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 112.857-9 chr3 88618751 88619003 + 0.785714 NA Intergenic Intergenic 280421 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 145.214 chr17 56512935 56513197 + 0.785714 NA 3' UTR (NM_001365758, exon 21 of 21) 3' UTR (NM_001365758, exon 21 of 21) -80633 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 193.429 chr6 163090657 163091004 + 0.785714 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -36669 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 153.5-4 chr5 153378148 153378689 + 0.785714 NA Intergenic Intergenic -112106 NM_001258020 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 238.143 chr14 42604061 42604555 + 0.785714 NA Intergenic Intergenic 997452 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 150.286-2 chr7 6504931 6505234 + 0.785714 NA intron (NM_001145118, intron 14 of 21) intron (NM_001145118, intron 14 of 21) -20930 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 153.643-4 chr22 38826833 38827039 + 0.785714 NA intron (NM_014293, intron 2 of 4) MIR|SINE|MIR 17092 NM_014293 23467 Hs.91622 NM_014293 ENSG00000221890 NPTXR NPR neuronal pentraxin receptor protein-coding 132.286-7 chr7 131079872 131080053 + 0.785714 NA intron (NR_109850, intron 2 of 5) intron (NR_109850, intron 2 of 5) 27068 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 107.143-7 chr15 60474870 60475097 + 0.785714 NA intron (NM_024611, intron 3 of 15) intron (NM_024611, intron 3 of 15) 4159 NM_001018089 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 175.072-2 chr2 28053028 28053430 + 0.785714 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 56862 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 144.357-3 chr8 68034400 68034826 + 0.785714 NA intron (NM_024870, intron 6 of 39) intron (NM_024870, intron 6 of 39) 82567 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 214.571 chr10 46008593 46009026 + 0.785714 NA intron (NM_005437, intron 9 of 9) Tigger1|DNA|TcMar-Tigger 10728 NM_001145262 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 148.071-2 chr14 52813255 52813462 + 0.785714 NA Intergenic AluYk3|SINE|Alu -21751 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 116.643-3 chr14 21729173 21729497 + 0.785714 NA Intergenic Intergenic -58318 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 105.643-3 chr10 82326114 82326372 + 0.785714 NA intron (NM_001370082, intron 3 of 10) L1MEc|LINE|L1 -93323 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 109.143-6 chr20 55461112 55461378 + 0.785714 NA Intergenic Intergenic -34048 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 104.929-2 chr1 238841190 238841768 + 0.785714 NA Intergenic Intergenic -355462 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 180.928 chr7 112332102 112332623 + 0.785714 NA intron (NM_021994, intron 7 of 11) MIR|SINE|MIR -90782 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 138.928 chr22 25214439 25214695 + 0.785714 NA Intergenic Intergenic -5072 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 228.857-2 chr5 38080962 38081339 + 0.785714 NA intron (NR_147009, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 55453 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 116.714-6 chr17 31329204 31329529 + 0.785714 NA intron (NM_001042492, intron 38 of 57) intron (NM_001042492, intron 38 of 57) -7744 NM_001003927 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 128.929-3 chr2 53464756 53465032 + 0.785714 NA Intergenic MER89|LTR|ERV1 -302889 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 180.429-2 chr4 31346160 31346562 + 0.785714 NA Intergenic L1MB7|LINE|L1 -160183 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 205.143 chr18 8991286 8991692 + 0.785714 NA Intergenic Intergenic -111210 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 111.643-5 chr18 68255179 68255356 + 0.785714 NA Intergenic L1MD|LINE|L1 -440445 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 260.928 chr3 62489626 62490029 + 0.785714 NA intron (NM_003716, intron 21 of 29) intron (NM_003716, intron 21 of 29) -116277 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 151.286 chr1 112140190 112140435 + 0.785714 NA Intergenic Intergenic 149776 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 158.5 chr1 195041018 195041393 + 0.785714 NA Intergenic Intergenic 1047510 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 150.929 chr10 84201008 84201230 + 0.785714 NA intron (NM_033100, intron 6 of 16) MIR|SINE|MIR 6582 NM_001171971 92211 Hs.137556 NM_033100 ENSG00000148600 CDHR1 CORD15|PCDH21|PRCAD|RP65 cadherin related family member 1 protein-coding 137 chr1 9917930 9918432 + 0.785714 NA Intergenic L2c|LINE|L2 -7912 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 135.214 chr1 85276659 85276916 + 0.785714 NA promoter-TSS (NM_003921) promoter-TSS (NM_003921) -155 NM_003921 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 148-4 chr17 49466889 49467216 + 0.785714 NA Intergenic MIR3|SINE|MIR -5303 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 142.071 chr19 43867970 43868261 + 0.785714 NA Intergenic AluSz6|SINE|Alu 12021 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 124.143-5 chr7 37055236 37055492 + 0.785714 NA intron (NM_001206480, intron 15 of 21) MIRb|SINE|MIR 57568 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 148.857-2 chr10 130300829 130301112 + 0.785714 NA Intergenic Intergenic 164561 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 144.786-4 chr20 54251472 54251842 + 0.785714 NA Intergenic Intergenic 43570 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 121.714 chr16 65344412 65344660 + 0.785714 NA intron (NR_027755, intron 7 of 8) intron (NR_027755, intron 7 of 8) -167963 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 104.929-5 chr21 15647664 15648001 + 0.785714 NA Intergenic L1ME3B|LINE|L1 -82102 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 129.286-11 chr5 130815433 130815687 + 0.785714 NA Intergenic Intergenic 349696 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 108.571-10 chr8 59230950 59231196 + 0.785714 NA Intergenic Intergenic 111863 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 159-2 chr21 18075363 18075798 + 0.785714 NA intron (NM_001204178, intron 2 of 5) MIRb|SINE|MIR 158240 NM_001204175 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 173.857-3 chr2 180441084 180441525 + 0.785714 NA Intergenic Intergenic -250800 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 160.5 chr2 126324483 126324759 + 0.785714 NA Intergenic Intergenic -206636 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 142.643-4 chr8 142553593 142553835 + 0.785714 NA Intergenic L1MEd|LINE|L1 60765 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 167.714 chr2 161524133 161524603 + 0.785714 NA Intergenic L1MDa|LINE|L1 -16466 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 127.429-2 chr10 73279926 73280109 + 0.785714 NA intron (NM_001367801, intron 20 of 27) L1M5|LINE|L1 27276 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 163.214-3 chr4 65043327 65043593 + 0.785714 NA Intergenic Intergenic -38960 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 105.357-6 chr7 80572543 80572706 + 0.785714 NA Intergenic L1M2b|LINE|L1 -29583 NM_001371080 170.714-3 chr21 28649328 28649805 + 0.785714 NA Intergenic L2a|LINE|L2 110248 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 128.357-3 chr7 92743857 92744102 + 0.785714 NA intron (NM_001259, intron 3 of 7) L1ME3|LINE|L1 89980 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 175.714-4 chr17 75578902 75579429 + 0.785714 NA Intergenic MIR|SINE|MIR -8893 NM_001309242 80022 Hs.390817 NM_001080847 ENSG00000266714 MYO15B MYO15BP myosin XVB protein-coding 168.714 chr5 18209229 18209601 + 0.785714 NA Intergenic Intergenic 402141 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 104.5 chr1 147639874 147640032 + 0.785714 NA Intergenic Intergenic 30571 NR_136634 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 131.071-2 chr4 69627202 69627474 + 0.785714 NA intron (NM_001301239, intron 1 of 4) intron (NM_001301239, intron 1 of 4) 12304 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 200.286 chr12 33662134 33662428 + 0.785714 NA Intergenic L1M5|LINE|L1 -222462 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 170.643-2 chr14 69095316 69095752 + 0.785714 NA intron (NM_003861, intron 5 of 8) (TTTGT)n|Simple_repeat|Simple_repeat 57065 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 143.929-2 chr3 157741760 157742060 + 0.785714 NA Intergenic L1ME1|LINE|L1 198566 NM_001243729 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 194.071 chr17 42466428 42466860 + 0.785714 NA intron (NM_005177, intron 3 of 20) intron (NM_005177, intron 3 of 20) 7766 NM_001130020 535 Hs.463074 NM_005177 ENSG00000033627 ATP6V0A1 ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 ATPase H+ transporting V0 subunit a1 protein-coding 139.429-2 chr15 40531670 40532025 + 0.785714 NA TTS (NR_002208) TTS (NR_002208) 703 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 105.143-14 chr7 85348168 85348388 + 0.785714 NA Intergenic Intergenic -72844 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 145.429 chr2 113850049 113850389 + 0.785714 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -39715 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 181.5-2 chr2 63817932 63818232 + 0.785714 NA Intergenic Intergenic -22882 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 136.357-4 chr4 166895613 166895941 + 0.785714 NA intron (NM_001251967, intron 2 of 7) intron (NM_001251967, intron 2 of 7) 338649 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 127.571-7 chr7 110252511 110252761 + 0.785714 NA Intergenic Intergenic -292423 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 103.929-8 chr14 77593501 77593953 + 0.785714 NA intron (NM_004863, intron 2 of 11) intron (NM_004863, intron 2 of 11) 23040 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 164.571-9 chr7 134779329 134779570 + 0.785714 NA promoter-TSS (NM_004342) promoter-TSS (NM_004342) -185 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 170.214-3 chr8 67264671 67264913 + 0.785714 NA intron (NM_006421, intron 14 of 38) intron (NM_006421, intron 14 of 38) 78989 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 131.857-6 chr5 35707197 35707435 + 0.785714 NA intron (NM_024867, intron 18 of 36) intron (NM_024867, intron 18 of 36) 89453 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 106-5 chr2 153985193 153985487 + 0.785714 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 40946 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 181.357-3 chr6 72093266 72093650 + 0.785714 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) -119435 NM_001350434 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 134.214-6 chr5 81564563 81564885 + 0.785714 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) -170590 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 124-10 chr8 113562466 113562759 + 0.785714 NA Intergenic Intergenic -125673 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 150.429-2 chr4 72033132 72033839 + 0.785714 NA intron (NM_004885, intron 1 of 3) intron (NM_004885, intron 1 of 3) 1681 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 115.286-2 chr15 33167872 33168061 + 0.785714 NA intron (NM_001277313, intron 3 of 20) Tigger2|DNA|TcMar-Tigger 26748 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 119.857-5 chrX 41197700 41197912 + 0.785714 NA intron (NM_001039591, intron 29 of 44) AluJb|SINE|Alu -77933 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 114.214 chr10 77515359 77515613 + 0.785714 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 122322 NM_001322829 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 154.071-4 chr8 134584268 134584575 + 0.785714 NA intron (NM_020863, intron 9 of 15) intron (NM_020863, intron 9 of 15) -13650 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 116.143-7 chr21 27772589 27772769 + 0.785714 NA Intergenic Intergenic 50300 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 157.286-4 chr6 54664778 54665194 + 0.785714 NA Intergenic Intergenic -181785 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 156.071 chr6 51578544 51578981 + 0.785714 NA Intergenic Intergenic -43108 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 194.214 chr12 87600419 87600754 + 0.785714 NA Intergenic Intergenic -168226 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 210 chr22 42321233 42321600 + 0.785714 NA Intergenic Intergenic -37489 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|DDVIBA|SPBP|TCF-20 transcription factor 20 protein-coding 144.286-4 chr7 132235333 132235667 + 0.785714 NA intron (NM_020911, intron 5 of 31) intron (NM_020911, intron 5 of 31) -25361 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 205.714-2 chr3 113524400 113524840 + 0.785714 NA Intergenic MER89-int|LTR|ERV1 -7751 NM_001308350 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 104.429-7 chr7 42752952 42753139 + 0.785714 NA Intergenic Intergenic -46598 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 111.357-5 chr2 81942535 81942786 + 0.785714 NA Intergenic MLT1H|LTR|ERVL-MaLR -475714 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 150.571-2 chr5 125845408 125845717 + 0.785714 NA Intergenic L1PA7|LINE|L1 -334015 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 128.571-7 chr3 106961392 106961653 + 0.785714 NA Intergenic Intergenic 279116 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 162.428 chr6 11569567 11569925 + 0.785714 NA intron (NM_001100829, intron 2 of 2) intron (NM_001100829, intron 2 of 2) 31997 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 153.214 chr1 110650091 110650403 + 0.785714 NA Intergenic Intergenic -18807 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 155.286-3 chr4 64536053 64536298 + 0.785714 NA Intergenic Intergenic -126715 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 126.429-3 chr2 51202394 51202780 + 0.785714 NA intron (NR_135237, intron 2 of 10) MLT1H-int|LTR|ERVL-MaLR 169986 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 169.143-2 chr2 184326978 184327305 + 0.785714 NA Intergenic L1MEc|LINE|L1 -51834 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 123.572 chr10 88881451 88881753 + 0.785714 NA intron (NM_020799, intron 1 of 10) intron (NM_020799, intron 1 of 10) 1357 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 118.786-2 chr3 192240112 192240412 + 0.785714 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 1632 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 118.571-3 chr16 74143467 74143764 + 0.785714 NA Intergenic Intergenic 71906 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 101.857-4 chr17 81683433 81683752 + 0.785714 NA promoter-TSS (NM_004712) promoter-TSS (NM_004712) 121 NM_001329609 339231 Hs.658789 NM_001040025 ENSG00000214087 ARL16 - ADP ribosylation factor like GTPase 16 protein-coding 246.429 chr10 73548864 73549403 + 0.785714 NA intron (NR_146997, intron 4 of 21) L2a|LINE|L2 4207 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 102.857-5 chr3 148491178 148491334 + 0.785714 NA Intergenic Intergenic -206615 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 206.786 chr1 115141103 115141541 + 0.785714 NA Intergenic Intergenic -51819 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 138.643-5 chr20 55665179 55665417 + 0.785714 NA Intergenic Intergenic -238101 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 162 chr11 114853035 114853420 + 0.785714 NA Intergenic Intergenic 174700 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 124.643-6 chr3 94717620 94717900 + 0.785714 NA Intergenic Intergenic -220503 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 142.286-3 chr3 38247088 38247631 + 0.785714 NA intron (NM_005109, intron 13 of 17) intron (NM_005109, intron 13 of 17) -18453 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 120.857-5 chr3 7166515 7166671 + 0.785714 NA intron (NM_000844, intron 2 of 9) MIR|SINE|MIR -272576 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 121.143 chr12 80926084 80926242 + 0.785714 NA intron (NM_004664, intron 1 of 5) L2a|LINE|L2 9670 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 114.571-6 chr17 60756644 60756900 + 0.785714 NA intron (NM_001330413, intron 6 of 25) L1MA4A|LINE|L1 78921 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 167.357 chr12 12682708 12683028 + 0.785714 NA intron (NM_006143, intron 3 of 3) intron (NM_006143, intron 3 of 3) 13315 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 117.428-5 chr6 16209464 16209720 + 0.785714 NA Intergenic Intergenic -28995 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 149.857 chr10 58167976 58168258 + 0.785714 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 99777 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 111.5 chr3 38873064 38873233 + 0.785714 NA intron (NM_014139, intron 19 of 25) intron (NM_014139, intron 19 of 25) 77413 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 162.571 chr10 23531655 23532008 + 0.785714 NA Intergenic Intergenic 92562 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 180-3 chr5 18959417 18959705 + 0.785714 NA Intergenic Intergenic 926711 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 107-9 chr2 159093741 159093978 + 0.785714 NA intron (NM_001350065, intron 4 of 27) intron (NM_001350065, intron 4 of 27) -92976 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 170.286 chr12 84772140 84772477 + 0.785714 NA Intergenic Intergenic 140491 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 160.643 chr17 32555047 32555320 + 0.785714 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 68190 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 177.857-7 chr3 142723012 142723410 + 0.785714 NA promoter-TSS (NM_001251845) promoter-TSS (NM_001251845) -823 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 265.643 chr10 71060693 71061453 + 0.785714 NA Intergenic MER91A|DNA|hAT-Tip100 122020 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 103.286-3 chr14 62622323 62622562 + 0.785714 NA Intergenic Intergenic 423016 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 106.429-10 chr7 87057538 87057764 + 0.785714 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) 2003 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 165.143 chr15 45355723 45356192 + 0.785714 NA Intergenic Cheshire|DNA|hAT-Charlie 22587 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 130.929 chr22 44508414 44508942 + 0.785714 NA Intergenic AluJo|SINE|Alu -10445 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 178.5-2 chr11 20283802 20284173 + 0.785714 NA Intergenic MER57A-int|LTR|ERV1 -79698 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 135.857-3 chr2 203080020 203080265 + 0.785714 NA intron (NM_001114132, intron 8 of 54) AluY|SINE|Alu 65263 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 268.643 chr3 29464187 29464760 + 0.785714 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 183161 NM_001177712 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 163 chr9 108895803 108896046 + 0.785714 NA intron (NM_001330749, intron 23 of 34) intron (NM_001330749, intron 23 of 34) 33658 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 245.5 chr16 6224281 6224605 + 0.785714 NA intron (NM_018723, intron 1 of 15) MER5A1|DNA|hAT-Charlie 204740 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 130.357-2 chr7 7710659 7710904 + 0.785714 NA intron (NM_002947, intron 2 of 7) L1MD1|LINE|L1 7826 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 137.643-5 chr2 220077281 220077495 + 0.785714 NA Intergenic Intergenic -170823 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 143.786-6 chr7 92752473 92752703 + 0.785714 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 81371 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 129.857-4 chr3 74198675 74198883 + 0.785714 NA Intergenic Intergenic 322361 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 128.143-4 chr4 90852993 90853274 + 0.785714 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 618102 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 131.429-8 chr7 49191511 49191704 + 0.785714 NA Intergenic ERV24_Prim-int|LTR|ERV1 267060 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 208.643-2 chr21 46279372 46279686 + 0.785714 NA intron (NM_003906, intron 4 of 27) intron (NM_003906, intron 4 of 27) 6082 NM_003906 8888 Hs.389037 NM_003906 ENSG00000160294 MCM3AP GANP|MAP80|PNRIID|SAC3 minichromosome maintenance complex component 3 associated protein protein-coding 147.357-2 chr9 96590393 96590672 + 0.785714 NA intron (NR_147239, intron 1 of 14) L1MB2|LINE|L1 -23556 NM_001351570 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 135.429-5 chrX 100919302 100919525 + 0.785714 NA intron (NM_212559, intron 2 of 2) intron (NM_212559, intron 2 of 2) 9504 NM_212559 402415 Hs.364911 NM_212559 ENSG00000182489 XKRX XKR2|XPLAC|XRG2 XK related X-linked protein-coding 201 chr10 110123889 110124633 + 0.785714 NA exon (NM_019903, exon 10 of 14) exon (NM_019903, exon 10 of 14) -83344 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 157.429 chr10 15332768 15333179 + 0.785714 NA intron (NM_001010924, intron 1 of 7) intron (NM_001010924, intron 1 of 7) 38316 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 106.857 chr12 43348947 43349133 + 0.785714 NA Intergenic MIR|SINE|MIR 193725 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 125.357-8 chr8 78290127 78290473 + 0.785714 NA Intergenic Intergenic -226040 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 142.214 chr6 47298524 47298838 + 0.785714 NA intron (NM_014452, intron 1 of 5) MER58B|DNA|hAT-Charlie 11224 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 205 chr9 73608806 73609249 + 0.785714 NA Intergenic Intergenic 457162 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 120.571-3 chr3 109720686 109720972 + 0.785714 NA Intergenic Intergenic 118001 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 112-6 chr2 15484109 15484281 + 0.785714 NA intron (NR_052013, intron 12 of 50) intron (NR_052013, intron 12 of 50) 77139 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 138.5-3 chr2 6700338 6700973 + 0.785714 NA Intergenic Intergenic -50136 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 242.857 chr12 99264368 99264972 + 0.785714 NA intron (NM_152788, intron 12 of 25) intron (NM_152788, intron 12 of 25) -109580 NM_001352190 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 171-2 chr5 39558126 39558492 + 0.785714 NA Intergenic Intergenic 37878 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 160.286-4 chr3 116240420 116240714 + 0.785714 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -119457 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 144.286-6 chr9 19915096 19915354 + 0.785714 NA Intergenic L1MB7|LINE|L1 -128206 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 148.786-3 chr6 99313217 99313609 + 0.785714 NA intron (NR_144463, intron 4 of 5) L1M5|LINE|L1 36261 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 195.857-2 chr5 95789026 95789367 + 0.785714 NA intron (NM_014899, intron 11 of 11) intron (NM_014899, intron 11 of 11) 33530 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 146-3 chr7 7182372 7182571 + 0.785714 NA promoter-TSS (NM_020156) promoter-TSS (NM_020156) -144 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 203.643 chr12 66042214 66042611 + 0.785714 NA Intergenic Intergenic -11346 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 227.643 chr10 50381319 50381841 + 0.785714 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -132970 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 181.143-3 chr15 91567792 91568107 + 0.785714 NA Intergenic MIRb|SINE|MIR 104610 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 187.643 chr4 60815419 60815771 + 0.785714 NA Intergenic Intergenic -107024 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 125.5-2 chr2 205427932 205428297 + 0.785714 NA intron (NM_205863, intron 19 of 21) AluSz6|SINE|Alu -254386 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 199.643 chr1 218357514 218357871 + 0.785714 NA intron (NR_138148, intron 1 of 6) intron (NR_138148, intron 1 of 6) -12014 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 184.714 chr18 63602544 63602959 + 0.785714 NA Intergenic Intergenic 15408 NM_012397 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 103.857-10 chr4 172890173 172890309 + 0.785714 NA intron (NM_001034845, intron 8 of 12) L1PA16|LINE|L1 -163363 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 141.571-2 chr16 64330197 64330470 + 0.785714 NA Intergenic MIR3|SINE|MIR 791730 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 154.071-2 chr3 189057281 189057615 + 0.785714 NA Intergenic Intergenic -109809 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 142.429 chr5 49666175 49666534 + 0.785714 NA Intergenic (CATTC)n|Satellite|Satellite 774934 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 98.3571-6 chr18 4991037 4991413 + 0.785714 NA Intergenic MER52-int|LTR|ERV1 -89957 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 144.786-3 chr19 28915661 28915921 + 0.785714 NA Intergenic Intergenic -49340 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 156.286 chr1 70505059 70505406 + 0.785714 NA Intergenic Intergenic 93964 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 128.357-2 chr2 73769829 73770123 + 0.785714 NA intron (NM_003584, intron 4 of 8) intron (NM_003584, intron 4 of 8) 10181 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 147.214-4 chr7 55232542 55232883 + 0.785714 NA Intergenic AluJo|SINE|Alu 22923 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 285.714 chr2 142500173 142500566 + 0.785714 NA Intergenic L2c|LINE|L2 -368668 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 161.357 chr1 179854147 179854533 + 0.785714 NA intron (NM_145034, intron 2 of 5) L1ME3Cz|LINE|L1 14500 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 139.643-4 chr22 20921310 20921570 + 0.785714 NA intron (NR_156180, intron 1 of 3) L2b|LINE|L2 4033 NR_156180 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 220 chr3 65809316 65809657 + 0.785714 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -84330 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 132.857-4 chr5 34917018 34917245 + 0.785714 NA intron (NM_018321, intron 1 of 9) intron (NM_018321, intron 1 of 9) 1420 NM_018321 55299 Hs.718510 NM_018321 ENSG00000113460 BRIX1 BRIX|BXDC2 biogenesis of ribosomes BRX1 protein-coding 139-5 chr3 95967343 95967565 + 0.785714 NA Intergenic MER2|DNA|TcMar-Tigger -284261 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 187.786 chr3 26106656 26107077 + 0.785714 NA Intergenic L1PB4|LINE|L1 -233171 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 101.357-8 chr20 54015847 54016011 + 0.785714 NA intron (NM_001366297, intron 4 of 8) L1ME4a|LINE|L1 43091 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 103.857-8 chr4 65789820 65789986 + 0.785714 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -119408 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 112.286-12 chr2 181911648 181911790 + 0.785714 NA intron (NM_006751, intron 9 of 16) intron (NM_006751, intron 9 of 16) 19989 NM_001130445 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 133.5-2 chr6 46146839 46147085 + 0.785714 NA TTS (NM_014936) TTS (NM_014936) 16973 NM_014936 22875 Hs.643497 NM_014936 ENSG00000001561 ENPP4 NPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 protein-coding 120.857-4 chr2 188676405 188676700 + 0.785714 NA Intergenic Intergenic 113571 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 127.5-5 chr2 175204973 175205199 + 0.785714 NA Intergenic MLT1M|LTR|ERVL-MaLR -23376 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 196.286 chr18 36104060 36104552 + 0.785714 NA Intergenic L1MB3|LINE|L1 25034 NM_012319 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 145.786 chr18 75987403 75987651 + 0.785714 NA Intergenic HERV16-int|LTR|ERVL -135471 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 105.929-7 chr4 67920084 67920464 + 0.785714 NA intron (NM_001114387, intron 7 of 9) MIR3|SINE|MIR -36272 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 162.643-4 chr2 76987945 76988235 + 0.785714 NA intron (NR_110284, intron 2 of 3) intron (NR_110284, intron 2 of 3) 2125 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 123.071-4 chr8 27419840 27420139 + 0.785714 NA exon (NM_004103, exon 4 of 32) exon (NM_004103, exon 4 of 32) -13381 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 127.429-9 chr22 26975793 26976126 + 0.785714 NA Intergenic Intergenic 72667 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 143.143-2 chr1 79494972 79495286 + 0.785714 NA Intergenic Intergenic -488399 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 105.643-12 chr3 52305464 52305618 + 0.785714 NA Intergenic Intergenic -10778 NM_015512 25981 Hs.655469 NM_015512 ENSG00000114841 DNAH1 CILD37|DNAHC1|HDHC7|HL-11|HL11|HSRF-1|SPGF18|XLHSRF-1 dynein axonemal heavy chain 1 protein-coding 147.071-3 chr21 25754400 25754759 + 0.785714 NA intron (NM_001197297, intron 5 of 9) HAL1|LINE|L1 -18925 NM_001003697 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 148.643-2 chr14 88824408 88824618 + 0.785714 NA promoter-TSS (NM_001366536) promoter-TSS (NM_001366536) -138 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 166.643 chr1 101409529 101409895 + 0.785714 NA Intergenic Intergenic 85875 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 184.5 chr4 24844986 24845296 + 0.785714 NA intron (NM_001130726, intron 4 of 11) intron (NM_001130726, intron 4 of 11) 49568 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 184.786 chr4 94674656 94675047 + 0.785714 NA Intergenic Intergenic 82682 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 208.929 chr6 153826556 153826876 + 0.785714 NA Intergenic Intergenic -183780 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 140.643 chr14 55784868 55785082 + 0.785714 NA intron (NR_026796, intron 3 of 3) intron (NR_026796, intron 3 of 3) 11699 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 154.214-2 chr3 99794546 99794933 + 0.785714 NA exon (NM_020351, exon 4 of 4) exon (NM_020351, exon 4 of 4) -23123 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 165.5 chr1 63978006 63978303 + 0.785714 NA intron (NM_005012, intron 1 of 8) MIR3|SINE|MIR 134051 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 140.429-2 chr10 53930758 53931012 + 0.785714 NA intron (NM_001354411, intron 26 of 34) LOR1b|LTR|ERV1 -555345 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 173.714-4 chr6 157028405 157028742 + 0.785714 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -7854 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 99.1428-6 chr5 39104369 39104568 + 0.785714 NA TTS (NM_001349333) TTS (NM_001349333) -30069 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 142.357-3 chr6 36740087 36740364 + 0.785714 NA TTS (NM_001314020) TTS (NM_001314020) 17175 NM_001314019 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 129.929-3 chr5 143395093 143395353 + 0.785714 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 8060 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 108.571-9 chr7 107217842 107218019 + 0.785714 NA intron (NM_181733, intron 18 of 20) L1MA7|LINE|L1 48927 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 145.643-2 chr5 25535848 25536096 + 0.785714 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 345019 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 165.143-4 chr7 14054791 14055100 + 0.785714 NA Intergenic L1MC5|LINE|L1 -63520 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 138.5-5 chr4 127873159 127873484 + 0.785714 NA Intergenic MSTA|LTR|ERVL-MaLR -7572 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 149.429-4 chr5 166753634 166754048 + 0.785714 NA Intergenic Intergenic 172529 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 205.357-2 chr5 83670291 83670651 + 0.785714 NA intron (NM_001884, intron 2 of 4) intron (NM_001884, intron 2 of 4) 50384 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 141.786-5 chr7 35434450 35434653 + 0.785714 NA Intergenic L1PA16|LINE|L1 120696 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 132.143-5 chr2 152297925 152298149 + 0.785714 NA Intergenic Intergenic -37137 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 117.286-4 chr7 35895973 35896169 + 0.785714 NA intron (NM_001363715, intron 11 of 13) AluSg|SINE|Alu 94852 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 97.7857-4 chr20 59170472 59170634 + 0.785714 NA Intergenic L1MD|LINE|L1 -20467 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 146.143-4 chr22 27135400 27135715 + 0.785714 NA Intergenic Intergenic -51959 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 119.428 chr1 188667847 188668103 + 0.785714 NA Intergenic HERV4_I-int|LTR|ERV1 1224347 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 98.3571-7 chr18 13566794 13566972 + 0.785714 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -44231 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 116.643-2 chr1 213841456 213841792 + 0.785714 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -83125 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 201.857-4 chr8 42992574 42993081 + 0.785714 NA intron (NM_032410, intron 15 of 21) L1MA3|LINE|L1 -63472 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 152.286 chr1 154628056 154628374 + 0.785714 NA promoter-TSS (NM_001025107) promoter-TSS (NM_001025107) -218 NM_001365045 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 103.929 chr1 116111432 116111667 + 0.785714 NA promoter-TSS (NM_152367) promoter-TSS (NM_152367) -206 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 100.714-12 chr5 40718314 40718483 + 0.785714 NA intron (NM_012382, intron 4 of 4) AluSz6|SINE|Alu 37563 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 105.286-4 chr8 116930118 116930358 + 0.785714 NA Intergenic FAM|SINE|Alu -7969 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 166.571 chr5 76652799 76653262 + 0.785714 NA intron (NM_006633, intron 18 of 35) MIRb|SINE|MIR -29627 NM_001256566 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 139.857-3 chr3 122297585 122297875 + 0.785714 NA Intergenic Intergenic -27518 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 127.929-6 chr5 160335412 160335703 + 0.785714 NA intron (NR_131769, intron 1 of 7) L2a|LINE|L2 4035 NR_131769 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 165.429-3 chr17 7467781 7468085 + 0.785714 NA intron (NM_020899, intron 1 of 3) intron (NM_020899, intron 1 of 3) 11698 NM_001128833 57659 Hs.35096 NM_020899 ENSG00000174282 ZBTB4 KAISO-L1|ZNF903 zinc finger and BTB domain containing 4 protein-coding 143.786 chr12 30309191 30309520 + 0.785714 NA Intergenic Intergenic 367889 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 101-7 chr2 13543373 13543546 + 0.785714 NA Intergenic Intergenic -536446 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 137.714-2 chr14 60458411 60458829 + 0.785714 NA intron (NM_174978, intron 14 of 17) intron (NM_174978, intron 14 of 17) 27443 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 126.857-14 chr8 84286698 84287007 + 0.785714 NA intron (NM_001354320, intron 2 of 9) LTR39|LTR|ERV1 102186 NM_001354322 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 148.429 chr3 146581403 146581750 + 0.785714 NA intron (NM_001321245, intron 7 of 7) L1MA8|LINE|L1 24640 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 120.214-5 chr17 57733828 57734290 + 0.785714 NA Intergenic Intergenic 11240 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 206.429 chr4 145182794 145183109 + 0.785714 NA Intergenic Intergenic -2362 NM_001366058 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 125.286-2 chr12 2905695 2905860 + 0.785714 NA intron (NM_003324, intron 1 of 10) intron (NM_003324, intron 1 of 10) 14886 NM_003324 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 174.357 chr20 43408614 43409015 + 0.785714 NA Intergenic L1MEf|LINE|L1 -49082 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 128.929-2 chr15 63527857 63528133 + 0.785714 NA intron (NM_001256702, intron 1 of 13) intron (NM_001256702, intron 1 of 13) 23402 NM_006537 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 173.071 chr10 57185972 57186320 + 0.785714 NA Intergenic LTR33B|LTR|ERVL 118413 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 172.714-4 chr8 132608506 132608896 + 0.785714 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -47222 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 185.929-3 chr8 120925757 120926162 + 0.785714 NA Intergenic Intergenic -113913 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 126.286-8 chr9 2387300 2387525 + 0.785714 NA Intergenic Intergenic 228956 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 139.643-5 chr3 122739218 122739470 + 0.785714 NA TTS (NM_024610) TTS (NM_024610) 54487 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 171.357-4 chr7 104988747 104989251 + 0.785714 NA non-coding (NR_039981, exon 1 of 1) non-coding (NR_039981, exon 1 of 1) 2166 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 149.643-2 chr2 210158359 210158681 + 0.785714 NA intron (NM_001307976, intron 1 of 13) MLT1F2|LTR|ERVL-MaLR 12889 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 111.714-7 chr20 48180595 48181065 + 0.785714 NA Intergenic Intergenic -179081 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 136.643-2 chr2 33178568 33179051 + 0.785714 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 44212 NM_001166264 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 210.071 chr1 112565397 112565834 + 0.785714 NA intron (NM_017744, intron 11 of 14) intron (NM_017744, intron 11 of 14) 53526 NM_138727 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 208.143 chr7 42096516 42096967 + 0.785714 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 140468 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 126.143 chr1 63585410 63585747 + 0.785714 NA Intergenic Intergenic -7833 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 152.786-3 chr8 90424263 90424554 + 0.785714 NA Intergenic AluJr|SINE|Alu 181655 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 133.857-7 chr7 8424323 8424580 + 0.785714 NA Intergenic L1MA7|LINE|L1 -9158 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 158.786 chr14 58847724 58848060 + 0.785714 NA intron (NR_110547, intron 1 of 5) FLAM_A|SINE|Alu 19604 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 130.5-3 chrX 152498195 152498401 + 0.785714 NA Intergenic Intergenic -46983 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 104.214-2 chr10 117332153 117332345 + 0.785714 NA intron (NM_173791, intron 2 of 4) L3b|LINE|CR1 43191 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 136.286-3 chr17 82438668 82438967 + 0.785714 NA intron (NM_173620, intron 8 of 11) intron (NM_173620, intron 8 of 11) 10909 NM_001193655 79415 Hs.163113 NM_001033046 ENSG00000178927 CYBC1 C17orf62|Eros cytochrome b-245 chaperone 1 protein-coding 110.5-2 chr11 100467422 100467602 + 0.785714 NA Intergenic AluJr4|SINE|Alu -219776 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 123-3 chr12 8519349 8519716 + 0.785714 NA intron (NM_080387, intron 4 of 5) L2c|LINE|L2 6029 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 149.214-2 chr2 61588656 61588860 + 0.785714 NA Intergenic L1MC1|LINE|L1 -50402 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 197.071-2 chr17 42408421 42408796 + 0.785714 NA intron (NM_012232, intron 1 of 1) AluSp|SINE|Alu 14648 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 100.929-7 chr3 107083923 107084066 + 0.785714 NA Intergenic Intergenic 156644 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 131.857 chr1 34474053 34474316 + 0.785714 NA Intergenic Intergenic 195510 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 181.143-4 chr7 138889266 138889854 + 0.785714 NA intron (NM_020910, intron 10 of 19) intron (NM_020910, intron 10 of 19) -91364 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 145.286-4 chr12 60928951 60929224 + 0.785714 NA Intergenic Intergenic 1239717 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 105.214-16 chr8 84427420 84427597 + 0.785714 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 12024 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 111.786-5 chr2 47317490 47317864 + 0.785714 NA intron (NR_110207, intron 1 of 2) MIRb|SINE|MIR -17638 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 99.0715 chr14 67754038 67754244 + 0.785714 NA exon (NM_015346, exon 38 of 42) exon (NM_015346, exon 38 of 42) 52255 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 109.214-4 chr2 12332192 12332345 + 0.785714 NA intron (NR_110196, intron 4 of 5) L1MA1|LINE|L1 133138 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 118.929-8 chr7 127389338 127389588 + 0.785714 NA intron (NM_176814, intron 2 of 5) intron (NM_176814, intron 2 of 5) 3245 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 200.714-2 chr8 105805484 105805937 + 0.785714 NA intron (NR_125796, intron 2 of 7) L2c|LINE|L2 254793 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 138.214-2 chr20 53581571 53581827 + 0.785714 NA exon (NM_006526, exon 1 of 5) exon (NM_006526, exon 1 of 5) 1398 NM_006526 7764 Hs.155040 NM_006526 ENSG00000171940 ZNF217 ZABC1 zinc finger protein 217 protein-coding 250.929 chr2 71524425 71524851 + 0.785714 NA intron (NM_001130985, intron 12 of 54) intron (NM_001130985, intron 12 of 54) 57939 NM_001130986 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 145.857 chr15 71131508 71131798 + 0.785714 NA Intergenic MLT1J2|LTR|ERVL-MaLR -9796 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 143.214-5 chr3 118086332 118086568 + 0.785714 NA Intergenic MLT2F|LTR|ERVL -395525 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 153 chr21 27225898 27226409 + 0.785714 NA Intergenic Intergenic -259065 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 102.786-6 chr22 35231183 35231404 + 0.785714 NA promoter-TSS (NR_126356) promoter-TSS (NR_126356) -237 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 187.571 chr9 5122000 5122380 + 0.785714 NA intron (NM_004972, intron 22 of 24) MamRep605|LTR?|LTR? 63449 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 112.214 chr15 80109056 80109293 + 0.785714 NA intron (NM_001242916, intron 2 of 6) intron (NM_001242916, intron 2 of 6) 10758 NM_001242919 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 147.929 chr2 121308368 121308598 + 0.785714 NA Intergenic L1M4|LINE|L1 -23281 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 168.214-2 chr17 77963222 77963598 + 0.785714 NA Intergenic Intergenic -40827 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 130.857-4 chr22 22248745 22248992 + 0.785714 NA Intergenic Intergenic 4082 NM_007128 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 122.857-2 chr1 165194257 165194561 + 0.785714 NA Intergenic L2c|LINE|L2 161832 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 146.714-2 chr10 124057882 124058155 + 0.785714 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 34388 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 121.214-2 chr12 14957114 14957305 + 0.785714 NA intron (NM_001321420, intron 1 of 6) MIRb|SINE|MIR 4071 NM_001321421 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 122.357-6 chr7 11840429 11840862 + 0.785714 NA Intergenic L1M1|LINE|L1 -8447 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 102.786-7 chr5 78323301 78323484 + 0.785714 NA Intergenic Intergenic -28637 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 97.5-5 chr3 99544092 99544272 + 0.785714 NA Intergenic Intergenic -94412 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 138.5 chr12 14740860 14741194 + 0.785714 NA Intergenic Intergenic 30104 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 162.643-6 chr8 116908208 116908505 + 0.785714 NA Intergenic Intergenic -29851 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 213.143 chr2 46644140 46644643 + 0.785714 NA Intergenic AluY|SINE|Alu 27176 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 132.643 chr11 79772364 79772618 + 0.785714 NA Intergenic MIRb|SINE|MIR -331461 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 105.643-13 chr3 126238864 126239040 + 0.785714 NA Intergenic THE1C-int|LTR|ERVL-MaLR -57766 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 232.357 chr4 55471368 55472145 + 0.785714 NA intron (NM_004898, intron 7 of 22) intron (NM_004898, intron 7 of 22) 74176 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 111.429-12 chr8 116107591 116107887 + 0.785714 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 217320 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 182.857-2 chrX 96860959 96861274 + 0.785714 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) -22792 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 179 chr5 14452689 14453060 + 0.785714 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -11109 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 188.786-2 chr22 19707175 19707458 + 0.785714 NA Intergenic Intergenic -7187 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 115.429 chr1 68440032 68440214 + 0.785714 NA intron (NM_000329, intron 6 of 13) MER5A|DNA|hAT-Charlie 9831 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 129.786 chr10 106697927 106698236 + 0.785714 NA intron (NM_001206569, intron 9 of 25) intron (NM_001206569, intron 9 of 25) 466625 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 144.143 chr14 52292388 52292585 + 0.785714 NA Intergenic L1ME3B|LINE|L1 -21826 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 188.714-3 chr16 12412353 12412806 + 0.785714 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -307742 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 110.929-3 chr2 186284383 186284654 + 0.785714 NA Intergenic Intergenic -198201 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 185.714-2 chr2 153074846 153075187 + 0.785714 NA Intergenic AluJr|SINE|Alu 356379 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 145.286-11 chr9 82593736 82594102 + 0.785714 NA Intergenic Intergenic 469223 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 130.286-5 chr9 35523346 35523660 + 0.785714 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) -15129 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 125.071-2 chr1 42266233 42266502 + 0.785714 NA intron (NM_001198850, intron 3 of 12) L1MCc|LINE|L1 68588 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 124.286-9 chr4 66163053 66163266 + 0.785714 NA Intergenic Intergenic -113665 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 157.714-4 chr5 155767527 155767873 + 0.785714 NA Intergenic Intergenic -559057 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 151.5-3 chr17 39293175 39293617 + 0.785714 NA intron (NM_001370208, intron 6 of 14) AluSx|SINE|Alu -4004 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 118.071 chr1 232125840 232126022 + 0.785714 NA Intergenic L1MB5|LINE|L1 200097 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 158.214 chr21 27206172 27206536 + 0.785714 NA Intergenic LTR16A2|LTR|ERVL -239266 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 148.857-7 chr7 106501891 106502114 + 0.785714 NA Intergenic L1MC5|LINE|L1 159156 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 123.643-2 chr4 67602011 67602279 + 0.785714 NA intron (NM_012108, intron 8 of 8) L1M1|LINE|L1 43418 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 130.714-2 chr1 116410824 116411161 + 0.785714 NA intron (NR_024125, intron 1 of 2) intron (NR_024125, intron 1 of 2) 7567 NR_024126 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 178.5 chr1 17334878 17335257 + 0.785714 NA intron (NM_012387, intron 3 of 15).2 AluJo|SINE|Alu 26870 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 153.929-3 chr9 82160000 82160246 + 0.785714 NA Intergenic Intergenic 171351 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 105.071-6 chr6 64588583 64588875 + 0.785714 NA intron (NM_001292009, intron 26 of 43) LTR33|LTR|ERVL -712689 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 105.857-8 chr2 22744567 22744737 + 0.785714 NA Intergenic Intergenic 208173 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 169.714 chr2 239033860 239034219 + 0.785714 NA Intergenic MIRb|SINE|MIR 34875 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 186 chr7 24027331 24027857 + 0.785714 NA Intergenic L2|LINE|L2 -256596 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 191.714 chr6 67837274 67837810 + 0.785714 NA Intergenic Intergenic -217809 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 127.571-8 chrX 44275219 44275381 + 0.785714 NA intron (NM_025184, intron 2 of 14) intron (NM_025184, intron 2 of 14) 68372 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 159.643-4 chr8 83681648 83682131 + 0.785714 NA Intergenic L1PA8A|LINE|L1 278131 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 100.929-9 chr6 37955878 37956133 + 0.785714 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 136278 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 178.214-2 chr13 31541973 31542314 + 0.785714 NA Intergenic Tigger3a|DNA|TcMar-Tigger -197383 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 116.857-7 chr6 157239088 157239371 + 0.785714 NA Intergenic Intergenic 85030 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 149.857-2 chr18 67082616 67082943 + 0.785714 NA Intergenic L1MA5|LINE|L1 1195 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 98.9999-3 chr4 61086687 61086938 + 0.785714 NA Intergenic Intergenic -56844 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 188.643-2 chr21 20747539 20747896 + 0.785714 NA intron (NR_109787, intron 6 of 6) intron (NR_109787, intron 6 of 6) 55391 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 137.929 chr15 70911086 70911327 + 0.785714 NA intron (NM_017691, intron 5 of 15) L2a|LINE|L2 18763 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 139.643-3 chr19 8390053 8390314 + 0.785714 NA promoter-TSS (NR_049795) promoter-TSS (NR_049795) -177 NM_004218 9230 Hs.558403 NM_004218 ENSG00000185236 RAB11B H-YPT3|NDAGSCW RAB11B, member RAS oncogene family protein-coding 147.857-3 chr14 70951557 70951927 + 0.785714 NA intron (NM_014982, intron 2 of 35) intron (NM_014982, intron 2 of 35) 44283 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 137.214-2 chr3 36041035 36041293 + 0.785714 NA Intergenic L1MA2|LINE|L1 296688 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 121.714-2 chr2 20521334 20521499 + 0.785714 NA Intergenic MLT1D|LTR|ERVL-MaLR -19892 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 102.786-9 chr9 99004593 99004808 + 0.785714 NA intron (NM_001855, intron 8 of 41) intron (NM_001855, intron 8 of 41) 60793 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 129.786-4 chr5 74549348 74549541 + 0.785714 NA Intergenic LTR85a|LTR|Gypsy? -12468 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 131.857-2 chr12 129957823 129957999 + 0.785714 NA Intergenic MER61A|LTR|ERV1 -53886 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 96.5714-2 chr1 108074229 108074478 + 0.785714 NA Intergenic Intergenic -109173 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 149.786-3 chr12 486661 486958 + 0.785714 NA intron (NM_173593, intron 1 of 19) L1MCa|LINE|L1 26870 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 120-7 chr8 131596937 131597212 + 0.785714 NA Intergenic Intergenic -307019 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 97.0714-8 chr4 90078124 90078265 + 0.785714 NA Intergenic MIRb|SINE|MIR -49339 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 124.214-3 chr6 82296391 82296651 + 0.785714 NA Intergenic Intergenic -48777 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 153.5 chr10 67596412 67596710 + 0.785714 NA intron (NM_001127384, intron 3 of 17) L1PA15|LINE|L1 69099 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 187.214 chr4 63317910 63318212 + 0.785714 NA Intergenic Intergenic 1091389 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 132.429-3 chr22 26848184 26848395 + 0.785714 NA Intergenic MLT1C|LTR|ERVL-MaLR -11922 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 126.786-9 chr7 35630747 35630923 + 0.785714 NA Intergenic L2b|LINE|L2 64300 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 136.857 chr11 42408275 42408604 + 0.785714 NA Intergenic Intergenic -154749 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 118.714-6 chr15 90590363 90590568 + 0.785714 NA intron (NM_001042574, intron 2 of 14) AluSx|SINE|Alu 60542 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 155.786 chr1 174274026 174274304 + 0.785714 NA promoter-TSS (NM_001366449) promoter-TSS (NM_001366449) -935 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 114.357-2 chr2 8364278 8364513 + 0.785714 NA Intergenic MIR|SINE|MIR -35976 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 149.571-3 chr4 28031401 28031667 + 0.785714 NA Intergenic L1PA15|LINE|L1 -788048 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 136.5-4 chr21 41974374 41974610 + 0.785714 NA Intergenic Intergenic -20474 NM_015500 25966 Hs.473894 NM_015500 ENSG00000157617 C2CD2 C21orf25|C21orf258|TMEM24L C2 calcium dependent domain containing 2 protein-coding 160.928-2 chr4 53364686 53365026 + 0.785714 NA intron (NM_152540, intron 1 of 8) intron (NM_152540, intron 1 of 8) 1205 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 149.214 chr11 132130803 132131043 + 0.785714 NA intron (NR_147849, intron 2 of 6) MIRb|SINE|MIR -153379 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 108.929-3 chr3 1403449 1403688 + 0.785714 NA 3' UTR (NM_001349356, exon 22 of 22) 3' UTR (NM_001349356, exon 22 of 22) 310544 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 147.071 chr14 81499686 81499888 + 0.785714 NA intron (NM_005065, intron 6 of 20) intron (NM_005065, intron 6 of 20) 34066 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 139.714-6 chr7 76421076 76421293 + 0.785714 NA intron (NM_007155, intron 1 of 8) AluSx3|SINE|Alu -3766 NM_001110354 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 OOMD3|ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 143.5-3 chr2 224589197 224589647 + 0.785714 NA Intergenic Intergenic -4025 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 181.214 chr22 46785978 46786380 + 0.785714 NA intron (NM_001284305, intron 1 of 12) L1MB7|LINE|L1 12252 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 169.286-2 chr22 45687064 45687423 + 0.785714 NA intron (NM_001167621, intron 1 of 10) intron (NM_001167621, intron 1 of 10) 15409 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 102.071-6 chr2 23839053 23839264 + 0.785714 NA intron (NR_125717, intron 13 of 28) L1MEd|LINE|L1 87965 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 139.786-5 chr5 32793874 32794088 + 0.785714 NA Intergenic Intergenic 82660 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 116.857-6 chr4 40949835 40950049 + 0.785714 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -92750 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 231.429 chr15 36478103 36478502 + 0.785714 NA Intergenic Intergenic -101324 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 127.286-3 chr18 22791089 22791278 + 0.785714 NA Intergenic Intergenic -4346 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 199.143 chr17 69634189 69634485 + 0.785714 NA intron (NR_109972, intron 3 of 4) L1MA8|LINE|L1 40350 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 160.214-2 chr6 121142346 121142703 + 0.785714 NA intron (NR_104452, intron 27 of 35) intron (NR_104452, intron 27 of 35) 191956 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 175.286-7 chr9 95623718 95624357 + 0.785714 NA Intergenic Charlie2a|DNA|hAT-Charlie -106980 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 154 chr15 58850427 58850710 + 0.785714 NA intron (NM_001040450, intron 7 of 8) intron (NM_001040450, intron 7 of 8) 79266 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 99.5715-2 chr16 46826184 46826491 + 0.785714 NA intron (NM_001001436, intron 1 of 3) intron (NM_001001436, intron 1 of 3) 4711 NR_145836 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 213.5 chr7 69412487 69412879 + 0.785714 NA Intergenic MLT1G|LTR|ERVL-MaLR 184941 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 114.071-3 chr8 91720728 91720933 + 0.785714 NA Intergenic AluY|SINE|Alu 296850 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 117.143-7 chr2 218000711 218000950 + 0.785714 NA Intergenic GA-rich|Low_complexity|Low_complexity 22123 NR_135524 105373878 Hs.630709 NR_135524 ENSG00000223923 LOC105373878 - uncharacterized LOC105373878 ncRNA 112.643-8 chr9 27582711 27583050 + 0.785714 NA Intergenic L2c|LINE|L2 -9014 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 120.714-5 chr2 160933026 160933195 + 0.785714 NA Intergenic LTR33|LTR|ERVL -203845 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 131.071 chr1 210143838 210144088 + 0.785714 NA intron (NM_153262, intron 6 of 7) MIR|SINE|MIR -88833 NM_019605 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 216.214 chr21 28231647 28231955 + 0.785714 NA Intergenic Intergenic -3134 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 189.572 chr12 126418611 126419111 + 0.785714 NA intron (NR_147498, intron 2 of 3) intron (NR_147498, intron 2 of 3) -7285 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 124-2 chr1 165830680 165830917 + 0.785714 NA intron (NM_012474, intron 1 of 6) AluJb|SINE|Alu 3184 NM_001363568 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 121-11 chr7 72112649 72112847 + 0.785714 NA intron (NM_001363460, intron 2 of 5) L2c|LINE|L2 224643 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 122.857 chr1 100113069 100113315 + 0.785714 NA intron (NM_001304829, intron 6 of 15) L1PA17|LINE|L1 19738 NM_194292 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 129.714-8 chr9 37844135 37844423 + 0.785714 NA intron (NM_001286810, intron 3 of 6) AluSz|SINE|Alu 43482 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 159.5-3 chr2 95039819 95040184 + 0.785714 NA intron (NM_022440, intron 1 of 1) intron (NM_022440, intron 1 of 1) 14293 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 142.786 chr2 11651516 11651778 + 0.785714 NA Intergenic Intergenic 18548 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 168.786-3 chr15 94182913 94183387 + 0.785714 NA Intergenic FLAM_C|SINE|Alu -75212 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 179.143-4 chr9 96187678 96187980 + 0.785714 NA Intergenic Intergenic -58634 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 240.214 chr14 69820824 69821165 + 0.785714 NA Intergenic FLAM_A|SINE|Alu 9234 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 167.286-4 chr6 138723166 138723464 + 0.785714 NA Intergenic Intergenic 31647 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 171.357-2 chr20 46892172 46892539 + 0.785714 NA Intergenic MER47A|DNA|TcMar-Tigger -2269 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 121.643-4 chr9 34732064 34732286 + 0.785714 NA Intergenic L1MA3|LINE|L1 -2687 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 203.071-2 chr2 139036057 139036395 + 0.785714 NA Intergenic AluSz6|SINE|Alu 138902 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 137-4 chr9 106253359 106253564 + 0.785714 NA Intergenic L1MEf|LINE|L1 -347467 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 293.214 chr6 69047398 69048013 + 0.785714 NA intron (NM_001704, intron 13 of 31) intron (NM_001704, intron 13 of 31) 412423 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 138.5-2 chr12 59964227 59964515 + 0.785714 NA Intergenic Intergenic 275001 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 107.786-2 chr16 71251790 71252016 + 0.785714 NA Intergenic Intergenic -21181 NM_017558 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 170.214 chr18 5636972 5637214 + 0.785714 NA Intergenic Intergenic -8102 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 129-3 chr18 1844158 1844403 + 0.785714 NA Intergenic Intergenic -484651 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 205.786-4 chr7 12878793 12879431 + 0.785714 NA Intergenic Intergenic 191479 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 120.429-6 chr3 153342478 153342720 + 0.785714 NA Intergenic Intergenic -141896 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 141.643-2 chr7 49177344 49177553 + 0.785714 NA Intergenic Intergenic 252901 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 165.357-3 chr8 84070869 84071163 + 0.785714 NA Intergenic Intergenic -111771 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 100.071-2 chr2 44547096 44547341 + 0.785714 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 185271 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 123.286-4 chr16 47816388 47816544 + 0.785714 NA Intergenic Intergenic -42115 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 199.857-2 chr4 188687025 188687384 + 0.785714 NA Intergenic Intergenic -89453 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 180.786 chr10 82583607 82583892 + 0.785714 NA intron (NR_163253, intron 3 of 10) MER45A|DNA|hAT-Tip100 -350829 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 159.5 chr10 54071596 54071867 + 0.785714 NA intron (NM_001354411, intron 18 of 34) intron (NM_001354411, intron 18 of 34) -414499 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 137.143-4 chr11 26499504 26499794 + 0.785714 NA intron (NM_001313727, intron 1 of 23) (TTTCTA)n|Simple_repeat|Simple_repeat 25747 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 217.357 chr7 3796721 3797286 + 0.785714 NA intron (NM_152744, intron 4 of 44) AluJr|SINE|Alu -332682 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 99.1428-4 chr2 198992971 198993139 + 0.785714 NA Intergenic Intergenic 464884 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 108.714-8 chr7 43327719 43328100 + 0.785714 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 177014 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 154.286 chr11 14792716 14793015 + 0.785714 NA intron (NM_000922, intron 4 of 15) intron (NM_000922, intron 4 of 15) 99340 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 222.786 chr4 30354836 30355193 + 0.785714 NA Intergenic MIR|SINE|MIR -365355 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 122.929-7 chr9 33017017 33017205 + 0.785714 NA intron (NM_001368996, intron 1 of 7) MER21B|LTR|ERVL 8009 NM_001368999 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 175.643-2 chr7 108278577 108279114 + 0.785714 NA intron (NM_001371171, intron 3 of 28) L1PA6|LINE|L1 -35460 NM_001371182 141.857 chr1 219009800 219010105 + 0.785714 NA intron (NR_031644, intron 6 of 6) L1MC|LINE|L1 -91441 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 130.143-7 chr8 122481695 122482065 + 0.785714 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 86764 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 138.643-8 chr9 103809563 103809827 + 0.785714 NA Intergenic Intergenic -190014 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 118.714-11 chr8 60147444 60147642 + 0.785714 NA Intergenic Intergenic 133857 NM_001321838 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 132-10 chr8 141120816 141121108 + 0.785714 NA Intergenic Intergenic -7627 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 135.214-2 chr1 99926025 99926298 + 0.785714 NA Intergenic Intergenic -43835 NM_012243 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 156.643 chr12 7194004 7194438 + 0.785714 NA intron (NM_001351131, intron 5 of 15) intron (NM_001351131, intron 5 of 15) 3859 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 159.714-2 chr2 48679653 48680000 + 0.785714 NA TTS (NM_001198594) TTS (NM_001198594) 61970 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 144-9 chr6 138305752 138306075 + 0.785714 NA intron (NM_020340, intron 22 of 33) L1MEg|LINE|L1 -71730 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 117.357 chr11 42783995 42784158 + 0.785714 NA Intergenic Intergenic 485293 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 139.786-4 chr5 27528584 27528928 + 0.785714 NA Intergenic L1P4a|LINE|L1 56464 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 230.857 chr5 14679282 14679787 + 0.785714 NA intron (NM_138348, intron 3 of 6) intron (NM_138348, intron 3 of 6) 14816 NM_138348 90268 Hs.406335 NM_138348 ENSG00000154124 OTULIN AIPDS|FAM105B|GUM OTU deubiquitinase with linear linkage specificity protein-coding 138.143 chr10 10184282 10184685 + 0.785714 NA Intergenic Intergenic 125761 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 222 chr12 76126136 76126552 + 0.785714 NA Intergenic Intergenic -41659 NM_001330232 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 161.357-6 chr2 33953698 33954009 + 0.785714 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -113373 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 158.643-2 chr12 41205741 41206085 + 0.785714 NA intron (NM_001164595, intron 3 of 9) L1ME3A|LINE|L1 17593 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 124.429-3 chr2 18587642 18587951 + 0.785714 NA intron (NM_001199104, intron 1 of 10) intron (NM_001199104, intron 1 of 10) 1773 NM_001002006 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 178.214-3 chr20 9977032 9977383 + 0.785714 NA Intergenic Tigger2|DNA|TcMar-Tigger -9126 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 138.357-4 chr18 8657490 8657680 + 0.785714 NA Intergenic Intergenic 48140 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 149.786-5 chr3 175415975 175416400 + 0.785714 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) 46647 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 147.643-2 chr1 197931351 197931590 + 0.785714 NA 3' UTR (NM_020204, exon 5 of 5) 3' UTR (NM_020204, exon 5 of 5) 14098 NM_001370213 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 239.786 chr1 151106880 151107401 + 0.785714 NA exon (NM_144618, exon 7 of 9) exon (NM_144618, exon 7 of 9) 36379 NM_001323910 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor subunit beta 2 protein-coding 132.214-2 chr12 77050473 77050731 + 0.785714 NA exon (NM_203394, exon 4 of 13) exon (NM_203394, exon 4 of 13) 14967 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 128.214 chr10 32642461 32642865 + 0.785714 NA intron (NM_001321115, intron 21 of 43) L1PA4|LINE|L1 196523 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 151.786-2 chr2 14230437 14230726 + 0.785714 NA non-coding (NR_103814, exon 4 of 4) non-coding (NR_103814, exon 4 of 4) 170377 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 142.857-2 chr16 76360934 76361244 + 0.785714 NA intron (NR_136213, intron 3 of 23) AluY|SINE|Alu 51237 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 168.5 chr5 6105852 6106400 + 0.785714 NA Intergenic Intergenic 231166 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 136.286-12 chrX 42227728 42228051 + 0.785714 NA Intergenic L1MA4A|LINE|L1 -304335 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 180.429-3 chr8 102238993 102239443 + 0.785714 NA promoter-TSS (NM_001172478) promoter-TSS (NM_001172478) -100 NM_015713 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 98.5714-3 chr21 35139777 35140012 + 0.785714 NA Intergenic (TATTA)n|Simple_repeat|Simple_repeat -90596 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 101.786-6 chr3 174615107 174615265 + 0.785714 NA Intergenic Intergenic -244148 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 136.071-5 chr2 1087819 1088016 + 0.785714 NA intron (NM_018968, intron 2 of 16) intron (NM_018968, intron 2 of 16) -136525 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 158 chr1 188297169 188297721 + 0.785714 NA Intergenic Intergenic 853817 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 152.643-3 chr4 155237879 155238144 + 0.785714 NA Intergenic MIRb|SINE|MIR 29375 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 101.857-7 chr20 35753881 35754050 + 0.785714 NA Intergenic AluJr|SINE|Alu -11629 NR_136587 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 134.143-5 chr5 106649403 106649687 + 0.785714 NA Intergenic Intergenic 361469 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 149.857-6 chr4 130054330 130054557 + 0.785714 NA Intergenic Intergenic 282824 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 199.286 chr18 56675318 56675732 + 0.785714 NA intron (NM_015285, intron 2 of 27) L1MB8|LINE|L1 24140 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 149.357-2 chr14 71932646 71933008 + 0.785714 NA promoter-TSS (NM_001204416) promoter-TSS (NM_001204416) -395 NM_001204417 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 128.714-4 chr3 116960940 116961300 + 0.785714 NA Intergenic Intergenic 39689 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 114.571-5 chr14 66412193 66412520 + 0.785714 NA Intergenic MSTA1|LTR|ERVL-MaLR -74015 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 184-3 chr3 71055375 71055802 + 0.785714 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) 9336 NM_001244813 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 105.429-3 chr14 98866815 98867035 + 0.785714 NA Intergenic Intergenic 155312 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 127.214-2 chr2 19908359 19908655 + 0.785714 NA Intergenic L1ME1|LINE|L1 -6524 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 139.571-5 chr2 69822695 69822959 + 0.785714 NA intron (NM_001320700, intron 12 of 12) L1MB4|LINE|L1 -6833 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 134.071-2 chr3 106262753 106262989 + 0.785714 NA Intergenic L1PA16|LINE|L1 -393470 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 187.857-3 chr7 28623549 28624018 + 0.785714 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -62350 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 113.143-8 chr20 9582526 9582704 + 0.785714 NA intron (NM_020341, intron 4 of 10) L1MC3|LINE|L1 -67617 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 172 chr14 64025231 64025504 + 0.785714 NA exon (NM_182914, exon 41 of 116) exon (NM_182914, exon 41 of 116) 69758 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 112.857 chr1 239937119 239937327 + 0.785714 NA Intergenic L1MEg|LINE|L1 -37351 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 118.5-2 chr1 210509582 210509742 + 0.785714 NA intron (NM_001122834, intron 8 of 11) intron (NM_001122834, intron 8 of 11) 180296 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 103.928 chr20 36948001 36948245 + 0.785714 NA intron (NM_015474, intron 1 of 15) MIRb|SINE|MIR 3585 NM_001363733 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 275.643 chr17 61578887 61579283 + 0.785714 NA Intergenic Intergenic 12134 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 139.357 chr13 46992041 46992386 + 0.785714 NA Intergenic MIRb|SINE|MIR -95137 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 116-4 chr4 82126285 82126652 + 0.785714 NA Intergenic MIRb|SINE|MIR 247523 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 191.429 chr3 47606328 47606699 + 0.785714 NA intron (NM_003074, intron 26 of 27) intron (NM_003074, intron 26 of 27) -26273 NM_001206942 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 181.786-2 chr2 188176013 188176453 + 0.785714 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 111458 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 212.143 chr10 14397733 14398123 + 0.785714 NA Intergenic Intergenic -14651 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 116.571-7 chr2 226195567 226195738 + 0.785714 NA Intergenic L1MA4|LINE|L1 52858 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 126.714-7 chr5 125789200 125789508 + 0.785714 NA Intergenic L1ME3G|LINE|L1 296093 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 145.5-2 chr20 59077232 59077519 + 0.785714 NA Intergenic MLT1N2|LTR|ERVL-MaLR -34529 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 160.571 chr13 50523576 50523789 + 0.785714 NA intron (NR_125753, intron 2 of 2) intron (NR_125753, intron 2 of 2) 3767 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 168.357 chr1 87789598 87790189 + 0.785714 NA Intergenic Intergenic -418238 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 140.786-2 chr15 63545098 63545440 + 0.785714 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) 40676 NM_006537 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 135.357-2 chr14 68939513 68939864 + 0.785714 NA intron (NM_001102, intron 1 of 20) L1MB8|LINE|L1 39614 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 189.286-2 chr7 119651960 119652231 + 0.785714 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 255280 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 122-8 chr8 106942651 106942817 + 0.785714 NA Intergenic Intergenic -172490 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 179.286-2 chr3 88154211 88154565 + 0.785714 NA intron (NM_173824, intron 2 of 2) intron (NM_173824, intron 2 of 2) 4429 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 97.9999-2 chr2 153404582 153405058 + 0.785714 NA Intergenic Intergenic 73942 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 109.571-6 chr7 78514976 78515202 + 0.785714 NA intron (NM_001301128, intron 4 of 20) intron (NM_001301128, intron 4 of 20) 167847 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 144.429-3 chr5 24453552 24453771 + 0.785714 NA Intergenic L1ME2|LINE|L1 191317 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 143.5 chr12 83336287 83336698 + 0.785714 NA Intergenic L1MB2|LINE|L1 649337 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 111.857-2 chr12 89724750 89725119 + 0.785714 NA Intergenic Intergenic -15568 NM_001001323 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 106.929-4 chr5 79699237 79699440 + 0.785714 NA intron (NM_153610, intron 1 of 12) L2b|LINE|L2 9502 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 155.357-5 chr3 184219789 184220090 + 0.785714 NA Intergenic Intergenic -10414 NM_138345 90113 Hs.584997 NM_138345 ENSG00000145198 VWA5B2 - von Willebrand factor A domain containing 5B2 protein-coding 136.286-2 chr14 29902943 29903221 + 0.785714 NA intron (NM_001330069, intron 1 of 18) L4_A_Mam|LINE|RTE-X 24014 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 133.286-11 chr8 83678848 83679038 + 0.785714 NA Intergenic Intergenic 275185 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 128.214-2 chr11 113784636 113784917 + 0.785714 NA Intergenic Intergenic 4980 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 127.357-3 chr14 58484055 58484297 + 0.785714 NA intron (NM_001329944, intron 21 of 31) intron (NM_001329944, intron 21 of 31) 44495 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 114.214-2 chr14 96742528 96742759 + 0.785714 NA intron (NR_146552, intron 1 of 3) intron (NR_146552, intron 1 of 3) 1452 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 107.786-4 chr3 48854112 48854300 + 0.785714 NA Intergenic Intergenic 6269 NR_109996 100506637 Hs.634259 NR_109996 ENSG00000224424 PRKAR2A-AS1 - PRKAR2A antisense RNA 1 ncRNA 144.929-4 chr6 54796020 54796245 + 0.785714 NA Intergenic THE1A|LTR|ERVL-MaLR -50639 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 111.429-14 chr9 80027639 80027809 + 0.785714 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 52701 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 111.071-5 chr7 76284027 76284265 + 0.785714 NA intron (NM_001291831, intron 15 of 15) intron (NM_001291831, intron 15 of 15) -18527 NM_001540 3315 Hs.520973 NM_001540 ENSG00000106211 HSPB1 CMT2F|HEL-S-102|HMN2B|HS.76067|HSP27|HSP28|Hsp25|SRP27 heat shock protein family B (small) member 1 protein-coding 158.143-5 chrX 71975086 71975397 + 0.785714 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) 64153 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 193.643 chr12 1117230 1117685 + 0.785714 NA intron (NR_027948, intron 6 of 19) intron (NR_027948, intron 6 of 19) 89709 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 104.357-7 chr3 154795470 154795733 + 0.785714 NA Intergenic Intergenic -228523 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 118.786-3 chr4 95218617 95218798 + 0.785714 NA intron (NM_003728, intron 9 of 15) intron (NM_003728, intron 9 of 15) 127216 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 260.286 chr8 84211472 84211985 + 0.785714 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 27062 NM_001354322 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 140.357 chr1 95605235 95605579 + 0.785714 NA Intergenic MER124|DNA?|DNA? 95291 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 111.428 chr10 65224238 65224468 + 0.785714 NA Intergenic Intergenic -299835 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 209.571-2 chr19 51750291 51750636 + 0.785714 NA intron (NM_001193306, intron 1 of 2) MER33|DNA|hAT-Charlie 1415 NM_001193306 2357 Hs.753 NM_002029 ENSG00000171051 FPR1 FMLP|FPR formyl peptide receptor 1 protein-coding 112.071-5 chr5 147912289 147912475 + 0.785714 NA Intergenic Intergenic -5844 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 106.429-6 chr3 135315177 135315448 + 0.785714 NA Intergenic Intergenic 520052 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 235.357 chr14 48290352 48290816 + 0.785714 NA Intergenic Intergenic -495570 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 147.643-3 chr7 28598538 28598796 + 0.785714 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -87466 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 141.357 chr11 5938764 5938995 + 0.785714 NA Intergenic Intergenic -8468 NM_001003443 390083 Hs.553741 NM_001003443 ENSG00000184478 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor family 56 subfamily A member 3 protein-coding 117.714-2 chr2 65016894 65017182 + 0.785714 NA intron (NM_003038, intron 5 of 7) intron (NM_003038, intron 5 of 7) 27639 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 118.286-2 chr13 48251194 48251508 + 0.785714 NA intron (NM_021999, intron 1 of 5) L2c|LINE|L2 18145 NM_021999 9445 Hs.643683 NM_021999 ENSG00000136156 ITM2B ABRI|BRI|BRI2|BRICD2B|E25B|E3-16|FBD|RDGCA|imBRI2 integral membrane protein 2B protein-coding 104.429 chr14 53228888 53229109 + 0.785714 NA Intergenic Intergenic 75644 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 149.714 chr12 4989599 4989824 + 0.785714 NA Intergenic MIRb|SINE|MIR -54168 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 137.643-3 chr14 69400770 69401071 + 0.785714 NA intron (NM_001330185, intron 1 of 5) FLAM_C|SINE|Alu 2228 NM_001252148 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 214.571-2 chr2 72552815 72553199 + 0.785714 NA intron (NR_135774, intron 8 of 19) L1MC|LINE|L1 273026 NM_001321734 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 118.429-6 chr8 118054952 118055224 + 0.785714 NA intron (NM_000127, intron 1 of 10) L1ME1|LINE|L1 56731 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 133.929-7 chr8 133184167 133184489 + 0.785714 NA Intergenic AluJo|SINE|Alu -6711 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 233.571-2 chr16 3750859 3751573 + 0.785714 NA intron (NM_004380, intron 20 of 30) intron (NM_004380, intron 20 of 30) -33692 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 145.143 chr10 51379812 51380323 + 0.785714 NA intron (NM_001098512, intron 2 of 17) L2a|LINE|L2 80494 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 105.429-4 chr15 25926859 25927095 + 0.785714 NA intron (NR_040082, intron 1 of 4) HERV35I-int|LTR|ERV1 24617 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 212.857 chr1 29529960 29530454 + 0.785714 NA Intergenic L1MEc|LINE|L1 -180093 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 100.929-5 chr2 217255190 217255497 + 0.785714 NA Intergenic AluJr|SINE|Alu -27390 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 137.643-4 chr2 52145332 52145577 + 0.785714 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -225194 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 101.357 chr13 36238065 36238343 + 0.785714 NA intron (NM_001144981, intron 7 of 7) L1MB5|LINE|L1 -23589 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 209.857 chr8 131074702 131075228 + 0.785714 NA Intergenic Intergenic -34056 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 195.857 chr1 225351591 225351921 + 0.785714 NA exon (NM_001367479, exon 72 of 86) exon (NM_001367479, exon 72 of 86) 76282 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 132.714-3 chr18 60772529 60772753 + 0.785714 NA Intergenic Tigger1|DNA|TcMar-Tigger -399866 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 167.357-3 chr6 65666399 65666632 + 0.785714 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 40710 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 201.929-2 chr8 107089159 107089517 + 0.785714 NA Intergenic Intergenic 247177 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 111.286-10 chr5 127367559 127367771 + 0.785714 NA intron (NM_001308121, intron 4 of 13) intron (NM_001308121, intron 4 of 13) 76869 NM_001256545 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 144.429-2 chr2 200264735 200265026 + 0.785714 NA Intergenic Intergenic -40999 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 152.143 chr17 81028677 81028989 + 0.714286 NA TTS (NR_026857) TTS (NR_026857) 5886 NR_026857 440465 Hs.448889 NM_001004336 ENSG00000226137 BAIAP2-DT BAIAP2-AS1|lnc-BAIAP2 BAIAP2 divergent transcript ncRNA 133.286-8 chr2 189709383 189709606 + 0.714286 NA intron (NM_144708, intron 9 of 22) HAL1|LINE|L1 33509 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 214.143 chr3 121038426 121039023 + 0.714286 NA intron (NR_145517, intron 3 of 8) L1PB4|LINE|L1 -10916 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 231.357 chr7 5613353 5613954 + 0.714286 NA Intergenic (AGAGAT)n|Simple_repeat|Simple_repeat 20837 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 184.286-3 chr11 86058152 86058478 + 0.714286 NA intron (NM_001206947, intron 1 of 18) intron (NM_001206947, intron 1 of 18) 10769 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 100.571-5 chr2 101057805 101058057 + 0.714286 NA intron (NM_001102426, intron 3 of 19) MER34A1|LTR|ERV1 55642 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 172.643 chr3 113522135 113522512 + 0.714286 NA Intergenic Intergenic -7167 NM_144718 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 155-4 chr18 9066867 9067226 + 0.714286 NA Intergenic Intergenic -35653 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 118.714-9 chr4 106592371 106592582 + 0.714286 NA Intergenic Intergenic 158852 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 125.357 chr13 42234614 42234873 + 0.714286 NA non-coding (NR_123714, exon 28 of 28) non-coding (NR_123714, exon 28 of 28) -37409 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 104.286-4 chr17 61401500 61401766 + 0.714286 NA intron (NM_005994, intron 1 of 6) CpG-11509 1790 NM_005994 6909 Hs.531085 NM_005994 ENSG00000121068 TBX2 VETD T-box transcription factor 2 protein-coding 116.714-4 chr14 51431654 51431970 + 0.714286 NA Intergenic Intergenic -34677 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 99.7142-3 chr7 130295026 130295287 + 0.714286 NA intron (NM_016352, intron 1 of 10) intron (NM_016352, intron 1 of 10) 2022 NM_016352 51200 Hs.93764 NM_016352 ENSG00000128510 CPA4 CPA3 carboxypeptidase A4 protein-coding 99.7142-5 chr9 128575408 128575639 + 0.714286 NA intron (NM_003127, intron 5 of 55) intron (NM_003127, intron 5 of 55) 22936 NM_001130438 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 118.571-8 chr6 107480804 107481014 + 0.714286 NA Intergenic Intergenic -9208 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 102.571-5 chr22 20946803 20947038 + 0.714286 NA intron (NR_156180, intron 2 of 3) intron (NR_156180, intron 2 of 3) -10172 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 228.214 chr5 28882718 28883205 + 0.714286 NA Intergenic L1PB3|LINE|L1 -43909 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 103.929-5 chr10 98477500 98477743 + 0.714286 NA intron (NM_001166246, intron 11 of 12) intron (NM_001166246, intron 11 of 12) -30658 NM_001322476 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 145.929 chr2 45337106 45337448 + 0.714286 NA Intergenic L1ME4a|LINE|L1 -82336 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 185-3 chr9 33233663 33234147 + 0.714286 NA Intergenic Intergenic -6262 NM_014471 27290 Hs.555934 NM_014471 ENSG00000122711 SPINK4 HEL136|PEC-60|PEC60 serine peptidase inhibitor, Kazal type 4 protein-coding 165.286 chr1 38119320 38119770 + 0.714286 NA Intergenic Intergenic 30314 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 148.5 chr14 76470860 76471209 + 0.714286 NA intron (NM_004452, intron 5 of 10) L2a|LINE|L2 99687 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 122.857-10 chr7 66704858 66705115 + 0.714286 NA intron (NM_001367733, intron 2 of 9) L1MC|LINE|L1 22820 NM_001367730 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 144.857 chr16 35333695 35334120 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger -29509 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 108.143-7 chr22 33408992 33409271 + 0.714286 NA intron (NM_133642, intron 7 of 14) intron (NM_133642, intron 7 of 14) 27538 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 132.714 chr12 34650471 34650816 + 0.714286 NA Intergenic ALR/Alpha|Satellite|centr 628147 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 114.071-2 chr6 41930015 41930336 + 0.714286 NA exon (NM_004053, exon 3 of 7) exon (NM_004053, exon 3 of 7) 8676 NM_004053 705 Hs.106880 NM_004053 ENSG00000112578 BYSL BYSTIN|Enp1 bystin like protein-coding 141.071-2 chr2 146652114 146652488 + 0.714286 NA Intergenic Intergenic 65244 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 122.857-4 chr15 44673554 44673884 + 0.714286 NA intron (NM_001330283, intron 3 of 14) intron (NM_001330283, intron 3 of 14) 3169 NM_001145112 197135 Hs.11594 NM_001145112 ENSG00000229474 PATL2 OOMD4|Pat1a|hPat1a PAT1 homolog 2 protein-coding 119.857-2 chr20 33613344 33613631 + 0.714286 NA intron (NM_001039709, intron 3 of 10) MER68B|LTR|ERVL -48840 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 153.786 chr1 173606796 173607040 + 0.714286 NA Intergenic Intergenic -3846 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 117.143-2 chr1 153326151 153326461 + 0.714286 NA Intergenic L1MC5|LINE|L1 -15588 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 101.714-8 chr7 22545525 22545814 + 0.714286 NA Intergenic ERVL-B4-int|LTR|ERVL -17668 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 124.143 chr10 62048575 62048784 + 0.714286 NA promoter-TSS (NM_001244638) promoter-TSS (NM_001244638) -678 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 225.571 chr17 65963988 65964460 + 0.714286 NA intron (NM_001353129, intron 17 of 26) MamRTE1|LINE|RTE-BovB -137681 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 146.714 chr1 51836236 51836646 + 0.714286 NA promoter-TSS (NR_031580) promoter-TSS (NR_031580) -39 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 129.929 chr18 38785438 38785763 + 0.714286 NA Intergenic Intergenic 836575 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 142.071-2 chr2 72134911 72135120 + 0.714286 NA intron (NM_001277742, intron 2 of 4) intron (NM_001277742, intron 2 of 4) 12847 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 144.286-2 chr1 89716976 89717327 + 0.714286 NA 3' UTR (NM_032270, exon 3 of 3) 3' UTR (NM_032270, exon 3 of 3) 84031 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 111.071-6 chr7 90914077 90914232 + 0.714286 NA intron (NM_012395, intron 6 of 13) intron (NM_012395, intron 6 of 13) 204338 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 188.286-2 chr9 18568940 18569228 + 0.714286 NA intron (NM_052866, intron 3 of 12) intron (NM_052866, intron 3 of 12) -4222 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 135.857 chr17 64115791 64116107 + 0.714286 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 14195 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 150.143 chr7 82283081 82283588 + 0.714286 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 160443 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 130.428 chr15 72016100 72016703 + 0.714286 NA intron (NM_006901, intron 6 of 41) intron (NM_006901, intron 6 of 41) -97857 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 101.286-6 chr2 224334629 224334802 + 0.714286 NA Intergenic Intergenic 67279 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 96.4286-3 chr6 25661547 25661707 + 0.714286 NA exon (NM_006998, exon 3 of 11) exon (NM_006998, exon 3 of 11) 9412 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 244.072 chr11 42899408 42899925 + 0.714286 NA Intergenic THE1C|LTR|ERVL-MaLR 369703 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 114.857-3 chr8 100888413 100888669 + 0.714286 NA Intergenic MLT1C|LTR|ERVL-MaLR 62030 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 173.571-2 chr5 156347836 156348085 + 0.714286 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 20796 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 205.786 chr10 60720600 60721191 + 0.714286 NA intron (NM_001204403, intron 1 of 43) AluJb|SINE|Alu 12633 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 114.429-9 chr6 162284803 162285032 + 0.714286 NA intron (NM_004562, intron 2 of 11) MLT1B|LTR|ERVL-MaLR -442215 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 106.643-4 chr3 127913791 127914059 + 0.714286 NA Intergenic LTR12|LTR|ERV1 -1307 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 154.357-3 chr8 125135686 125136161 + 0.714286 NA intron (NM_001349486, intron 3 of 7) L1MEc|LINE|L1 44063 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 155.357 chr1 93314695 93314943 + 0.714286 NA intron (NR_034089, intron 8 of 8) AluJr4|SINE|Alu 30992 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 215-2 chr11 82506087 82506586 + 0.714286 NA Intergenic LTR16C|LTR|ERVL -102423 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 197.143-3 chr5 44858686 44859028 + 0.714286 NA Intergenic Intergenic 49910 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 100.357-6 chr7 104112844 104113249 + 0.714286 NA Intergenic L1MB7|LINE|L1 94967 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 103.714-20 chr7 69521275 69521460 + 0.714286 NA Intergenic L1M4b|LINE|L1 76257 NR_108105 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 131.929 chr2 30871316 30871646 + 0.714286 NA Intergenic Intergenic -64035 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 97.1429-2 chr16 8713442 8713699 + 0.714286 NA 5' UTR (NM_000663, exon 1 of 16) 5' UTR (NM_000663, exon 1 of 16) 601 NM_000663 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 100.5-2 chr2 116365574 116365765 + 0.714286 NA Intergenic Intergenic 1021854 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 101.286-2 chr10 25284548 25284813 + 0.714286 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -108404 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 137.286 chr14 19903762 19904062 + 0.714286 NA Intergenic Intergenic -16695 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 187.857 chr20 19401447 19401776 + 0.714286 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -117015 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 119.714-12 chr6 56365347 56365521 + 0.714286 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 28694 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 152-2 chr13 111896608 111896855 + 0.714286 NA intron (NR_120401, intron 1 of 3) THE1D|LTR|ERVL-MaLR 3235 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 175.786 chr2 22148289 22148630 + 0.714286 NA Intergenic L1PB4|LINE|L1 -388020 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 149.643-4 chr6 40467490 40467897 + 0.714286 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 89356 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 103.357-2 chr2 103114243 103114393 + 0.714286 NA Intergenic Intergenic -129889 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 166.143-2 chr22 38405332 38405665 + 0.714286 NA Intergenic AluY|SINE|Alu -6572 NR_002821 400927 Hs.720223 NR_002821 TPTEP2 Z98749.2 TPTE pseudogene 2 pseudo 172.429 chr10 68095346 68095814 + 0.714286 NA Intergenic Intergenic -10427 NR_045662 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 197.429 chr4 52833359 52833783 + 0.714286 NA Intergenic Intergenic -28746 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 189.857-3 chr5 79037706 79038386 + 0.714286 NA intron (NR_104003, intron 2 of 9) L1M4|LINE|L1 31628 NR_104003 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 106.857-4 chr20 54682710 54682941 + 0.714286 NA Intergenic Intergenic 207232 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 112.143-4 chr10 68871790 68872057 + 0.714286 NA intron (NM_152709, intron 1 of 3) intron (NM_152709, intron 1 of 3) -29392 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 177.428 chr1 189564012 189564448 + 0.714286 NA Intergenic L2a|LINE|L2 911780 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 145.286-7 chr3 9674178 9674401 + 0.714286 NA intron (NM_001077525, intron 7 of 18) L1ME4a|LINE|L1 24784 NM_001077526 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 129.572 chr6 92290928 92291318 + 0.714286 NA Intergenic Intergenic -600695 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 103.143-5 chr14 91982047 91982260 + 0.714286 NA intron (NM_004239, intron 16 of 20) intron (NM_004239, intron 16 of 20) -34451 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 99.3572-5 chr6 152133149 152133543 + 0.714286 NA exon (NM_033071, exon 143 of 146) exon (NM_033071, exon 143 of 146) 34941 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 100.143 chr10 62023012 62023170 + 0.714286 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -26266 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 102.571 chr1 238799851 238800054 + 0.714286 NA Intergenic MER47A|DNA|TcMar-Tigger -313935 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 232.286 chr6 107538141 107538802 + 0.714286 NA intron (NM_018013, intron 4 of 6) intron (NM_018013, intron 4 of 6) 48354 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 175.286 chr15 94081147 94081636 + 0.714286 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 26547 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 121.071-3 chr16 67137682 67137914 + 0.714286 NA intron (NM_001320542, intron 9 of 16) intron (NM_001320542, intron 9 of 16) 13200 NM_033309 84752 Hs.744158 NM_033309 ENSG00000237172 B3GNT9 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding 133.643-2 chr2 216442950 216443197 + 0.714286 NA intron (NM_001127207, intron 10 of 17) intron (NM_001127207, intron 10 of 17) 30308 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 170.643-3 chr8 109351435 109351962 + 0.714286 NA Intergenic L1MA10|LINE|L1 -10763 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 132.5-3 chr20 44113733 44113999 + 0.714286 NA intron (NM_020433, intron 5 of 5) L2c|LINE|L2 73322 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 141.786-3 chr5 77311238 77311523 + 0.714286 NA intron (NM_001349749, intron 2 of 22) intron (NM_001349749, intron 2 of 22) 100700 NM_001029851 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 105.786-4 chr17 73147003 73147200 + 0.714286 NA Intergenic L2b|LINE|L2 -17909 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 119.714-9 chr20 6455944 6456216 + 0.714286 NA intron (NR_109953, intron 2 of 3) L1MC|LINE|L1 29348 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 166.857 chr1 29436490 29436806 + 0.714286 NA Intergenic MSTA1-int|LTR|ERVL-MaLR -86534 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 142.857 chr10 19036493 19036936 + 0.714286 NA Intergenic Intergenic -12087 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 128.214-6 chr20 15285354 15285584 + 0.714286 NA intron (NM_001351663, intron 6 of 17) LTR37B|LTR|ERV1 88629 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 126.714-3 chr2 164876092 164876585 + 0.714286 NA Intergenic Intergenic -34262 NM_001278460 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 139.786-2 chr3 70484154 70484508 + 0.714286 NA Intergenic L1ME4b|LINE|L1 -171693 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 159.428-2 chr7 109409563 109409954 + 0.714286 NA Intergenic Intergenic -525171 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 164.571-6 chr5 167935085 167935592 + 0.714286 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 180409 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 114.429-4 chr10 91509542 91509768 + 0.714286 NA intron (NM_182765, intron 20 of 20) L1PA15|LINE|L1 99370 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 246.786-2 chr4 15079776 15080321 + 0.714286 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) 77567 NM_001177382 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 109.429 chr16 56172244 56172855 + 0.714286 NA intron (NR_027078, intron 2 of 4) L1MEc|LINE|L1 18545 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 117.571-3 chr1 210283936 210284205 + 0.714286 NA Intergenic MIRb|SINE|MIR -44182 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 199.714 chr10 60382309 60382690 + 0.714286 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 7376 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 109.714-10 chr8 119692248 119692443 + 0.714286 NA Intergenic THE1C-int|LTR|ERVL-MaLR -18955 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 130-5 chr8 48612261 48612499 + 0.714286 NA intron (NR_105002, intron 2 of 3) L1MD1|LINE|L1 -8023 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 144.5 chr12 68207710 68208109 + 0.714286 NA intron (NM_018402, intron 3 of 4) Tigger2|DNA|TcMar-Tigger 17901 NM_018402 55801 Hs.272350 NM_018402 ENSG00000111536 IL26 AK155|IL-26 interleukin 26 protein-coding 190.786 chr6 155494161 155494590 + 0.714286 NA Intergenic Intergenic -20469 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 116.714 chr11 26626700 26627013 + 0.714286 NA intron (NM_031418, intron 18 of 26) HAL1|LINE|L1 -54593 NM_001135092 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 105.714-6 chr14 26612349 26612509 + 0.714286 NA intron (NR_147061, intron 1 of 6) intron (NR_147061, intron 1 of 6) 13782 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 97-4 chr2 171667022 171667211 + 0.714286 NA Intergenic Intergenic -20353 NM_001320882 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 122.714-6 chr4 80315628 80315836 + 0.714286 NA Intergenic Intergenic -19988 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 101.571-10 chr4 47483171 47483429 + 0.714286 NA Intergenic Intergenic -1975 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 107.643-7 chr8 127911416 127911618 + 0.714286 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 37206 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 229 chr8 125095702 125096140 + 0.714286 NA intron (NM_001349485, intron 1 of 6) intron (NM_001349485, intron 1 of 6) 4061 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 161.714 chr1 174443886 174444250 + 0.714286 NA intron (NM_001366446, intron 13 of 25) L1MA4|LINE|L1 -3896 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 127.429-4 chr17 68960177 68960419 + 0.714286 NA Intergenic AluSq2|SINE|Alu -4906 NM_001288985 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 228.929 chr8 142057494 142058022 + 0.714286 NA Intergenic L1ME4a|LINE|L1 -118581 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 126-8 chr5 72661913 72662251 + 0.714286 NA Intergenic MIR|SINE|MIR -1413 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 149.357-3 chr2 48242351 48242718 + 0.714286 NA Intergenic HAL1|LINE|L1 -72148 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 98.5715 chr10 19360447 19360586 + 0.714286 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 311715 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 169.429-2 chr5 17314756 17315125 + 0.714286 NA Intergenic Intergenic 72370 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 121.786-4 chr4 91899203 91899431 + 0.714286 NA Intergenic L1MD2|LINE|L1 377985 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 150.571-3 chr7 48516732 48516985 + 0.714286 NA exon (NM_152701, exon 52 of 62) exon (NM_152701, exon 52 of 62) 345400 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 207.714 chr5 96183476 96183815 + 0.714286 NA intron (NR_130776, intron 1 of 4) MIR3|SINE|MIR 104507 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 98.2857-2 chr11 21165455 21165649 + 0.714286 NA intron (NM_201551, intron 13 of 18) L1MA3|LINE|L1 495966 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 108.929 chr1 216265872 216266147 + 0.714286 NA intron (NM_206933, intron 11 of 71) L1MA5|LINE|L1 157387 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 169.357 chr10 55002972 55003392 + 0.714286 NA intron (NM_001354404, intron 3 of 34) LOR1-int|LTR|ERV1 -201891 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 168.429 chr8 122606877 122607293 + 0.714286 NA Intergenic Intergenic -38441 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 101.286-5 chr2 54396455 54396665 + 0.714286 NA Intergenic AluSx|SINE|Alu -59767 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 138 chr1 209836180 209836643 + 0.714286 NA intron (NM_014388, intron 5 of 11) MER103C|DNA|hAT-Charlie 8439 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 125.857 chr15 63825164 63825410 + 0.714286 NA intron (NM_003922, intron 1 of 77) AluSz6|SINE|Alu 8661 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 110.429-2 chr10 18761269 18761820 + 0.714286 NA Intergenic Intergenic 102113 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 99.6429-3 chr2 145496273 145496470 + 0.714286 NA Intergenic Intergenic 828404 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 110.929-2 chr16 26114253 26114410 + 0.714286 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 89094 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 121.5-3 chr11 56389965 56390238 + 0.714286 NA Intergenic Intergenic 14477 NM_001005204 219417 Hs.553618 NM_001005204 ENSG00000172199 OR8U1 - olfactory receptor family 8 subfamily U member 1 protein-coding 159.429-6 chr7 13030977 13031385 + 0.714286 NA Intergenic MIR|SINE|MIR 343548 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 189.286 chr7 9411475 9411981 + 0.714286 NA Intergenic Intergenic -222542 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 162.857-2 chr3 7008872 7009281 + 0.714286 NA intron (NM_000844, intron 1 of 9) L3b|LINE|CR1 -115059 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 178.286-5 chr8 62066997 62067426 + 0.714286 NA Intergenic L1M1|LINE|L1 177372 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 100.857-15 chrX 96521392 96521564 + 0.714286 NA Intergenic L1MEi|LINE|L1 -163185 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 139.286-4 chr2 68558330 68558597 + 0.714286 NA intron (NM_173545, intron 8 of 9) intron (NM_173545, intron 8 of 9) -85125 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 113.714-7 chr21 45364091 45364274 + 0.714286 NA Intergenic Intergenic -22192 NR_103811 388830 Hs.592162 NR_103811 ENSG00000237664 LINC00316 C21orf111|NCRNA00316|PRED59 long intergenic non-protein coding RNA 316 ncRNA 117.643 chr11 68675741 68675990 + 0.714286 NA Intergenic Intergenic -8679 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 156.143-7 chr5 52959551 52959882 + 0.714286 NA TTS (NM_181501) TTS (NM_181501) -29636 NR_073103 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 136.071 chr10 24466478 24466719 + 0.714286 NA promoter-TSS (NM_001282770) promoter-TSS (NM_001282770) 67 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 175.214 chr1 43845617 43846075 + 0.714286 NA intron (NM_001270466, intron 4 of 4) L1MEc|LINE|L1 7224 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 252.714 chr8 73293684 73294262 + 0.714286 NA promoter-TSS (NM_000971) promoter-TSS (NM_000971) -340 NM_000971 6129 Hs.421257 NM_000971 ENSG00000147604 RPL7 L7|humL7-1 ribosomal protein L7 protein-coding 104.857-3 chr2 101957431 101957655 + 0.714286 NA Intergenic MER77B|LTR|ERVL -25922 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 115.143-6 chr5 145449003 145449269 + 0.714286 NA Intergenic MLT1K|LTR|ERVL-MaLR 386206 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 123.143-4 chr17 16333125 16333310 + 0.714286 NA Intergenic L1MB5|LINE|L1 20252 NM_181716 201161 Hs.433422 NM_181716 ENSG00000166582 CENPV 3110013H01Rik|CENP-V|PRR6|p30 centromere protein V protein-coding 126.714 chr1 215911181 215911382 + 0.714286 NA intron (NM_206933, intron 38 of 71) L1MA1|LINE|L1 -161184 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 161-3 chr16 74877388 74877694 + 0.714286 NA intron (NM_030581, intron 25 of 25) (TTAT)n|Simple_repeat|Simple_repeat -102721 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 108.286-9 chr12 20400805 20401043 + 0.714286 NA intron (NM_000921, intron 1 of 15) MIRb|SINE|MIR 31679 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 121.857 chr20 3887634 3887962 + 0.714286 NA promoter-TSS (NM_024960) promoter-TSS (NM_024960) -983 NM_024960 80025 Hs.114180 NM_024960 ENSG00000125779 PANK2 C20orf48|HARP|HSS|NBIA1|PKAN pantothenate kinase 2 protein-coding 188-4 chr8 76482901 76483518 + 0.714286 NA intron (NR_105006, intron 3 of 5) LTR40a|LTR|ERVL 76555 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 113.714-4 chr14 71209505 71209790 + 0.714286 NA Intergenic MER2|DNA|TcMar-Tigger -110829 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 165.643 chr11 15445189 15445621 + 0.714286 NA Intergenic Intergenic -198480 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 134.572-2 chr16 61644806 61645219 + 0.714286 NA Intergenic Intergenic 391426 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 139.571-4 chr2 53762333 53762661 + 0.714286 NA intron (NM_145863, intron 1 of 8) intron (NM_145863, intron 1 of 8) -5286 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 188.143-2 chr12 3539207 3539636 + 0.714286 NA intron (NM_019854, intron 1 of 9) intron (NM_019854, intron 1 of 9) -46602 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 137.643-2 chr12 127569775 127570094 + 0.714286 NA Intergenic L2a|LINE|L2 66533 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 111.286-3 chr20 11465804 11466138 + 0.714286 NA Intergenic L1PB4|LINE|L1 -192588 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 154.143 chr14 23522770 23523055 + 0.714286 NA exon (NM_033400, exon 10 of 10) exon (NM_033400, exon 10 of 10) 10102 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 115.143-5 chr5 54913868 54914270 + 0.714286 NA Intergenic Intergenic 71524 NM_001135604 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 170.572 chr11 96624227 96624545 + 0.714286 NA Intergenic Intergenic 115961 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 119.286-11 chrX 103837670 103837975 + 0.714286 NA Intergenic L1MB8|LINE|L1 -5540 NR_146560 51209 Hs.522736 NM_016370 ENSG00000123570 RAB9B RAB9L|Rab-9L RAB9B, member RAS oncogene family protein-coding 137.643 chr10 43130461 43130814 + 0.714286 NA TTS (NM_020975) TTS (NM_020975) -7808 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 233.214 chr2 122794375 122794862 + 0.714286 NA Intergenic MIRb|SINE|MIR 278863 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 105.857-4 chr11 122958726 122958884 + 0.714286 NA intron (NM_001363089, intron 8 of 8) intron (NM_001363089, intron 8 of 8) 23029 NM_001098169 390259 Hs.449687 NM_001098169 ENSG00000188909 BSX BSX1 brain specific homeobox protein-coding 138.571 chr1 110660811 110661078 + 0.714286 NA intron (NR_109845, intron 2 of 2) L2a|LINE|L2 10831 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 203.143 chr12 51037987 51038430 + 0.714286 NA Intergenic AluJb|SINE|Alu -9966 NM_001174125 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 199 chr2 160037161 160037573 + 0.714286 NA intron (NM_001007267, intron 3 of 26) L2c|LINE|L2 25248 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 100.143-11 chr9 106516545 106516983 + 0.714286 NA Intergenic Intergenic -84164 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 211.786 chr8 40322894 40323473 + 0.714286 NA Intergenic Intergenic 20180 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 118.143 chr1 198889072 198889295 + 0.714286 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) -30030 NR_029626 406995 NR_029626 ENSG00000207759 MIR181A1 MIR213|MIRN181A1|MIRN213|hsa-mir-181a-1|mir-181a-1|mir-213 microRNA 181a-1 ncRNA 102.143-13 chr8 134889293 134889554 + 0.714286 NA Intergenic L1MB7|LINE|L1 39488 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 189.857 chr22 20405043 20405396 + 0.714286 NA intron (NR_046282, intron 5 of 5) intron (NR_046282, intron 5 of 5) 11068 NM_001256525 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 107.143-13 chr3 52143676 52143894 + 0.714286 NA intron (NM_015426, intron 6 of 10) intron (NM_015426, intron 6 of 10) 10638 NM_001161581 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 215.286 chr22 24859851 24860235 + 0.714286 NA intron (NM_001098498, intron 9 of 23) intron (NM_001098498, intron 9 of 23) 53822 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 160.643-2 chr19 57467213 57467657 + 0.714286 NA Intergenic MLT1B|LTR|ERVL-MaLR 10131 NM_001144068 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 174.643-2 chr7 25657083 25657401 + 0.714286 NA non-coding (NR_157827, exon 3 of 3) non-coding (NR_157827, exon 3 of 3) 5898 NR_157819 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 182.572 chr11 97086423 97086726 + 0.714286 NA Intergenic Intergenic 578149 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 190.929 chr12 3576460 3576795 + 0.714286 NA intron (NM_019854, intron 6 of 9) MIRb|SINE|MIR -83808 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 117.857-12 chr6 158118807 158119012 + 0.714286 NA intron (NM_032861, intron 12 of 16) intron (NM_032861, intron 12 of 16) 49353 NM_032861 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 169.857 chr4 5841948 5842274 + 0.714286 NA intron (NM_001014809, intron 7 of 13) AluY|SINE|Alu 45702 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 127.714-2 chr12 123230800 123231080 + 0.714286 NA intron (NR_103517, intron 1 of 23) L1MB7|LINE|L1 2201 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 135.357 chr1 199482679 199482884 + 0.714286 NA Intergenic MamRep605|LTR?|LTR? 334183 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 107.429-8 chr5 150512736 150512946 + 0.714286 NA intron (NM_001543, intron 1 of 14) MIRb|SINE|MIR 4710 NM_001543 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 144.143-5 chr8 86226674 86226959 + 0.714286 NA intron (NM_138817, intron 1 of 3) intron (NM_138817, intron 1 of 3) 3565 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 162.929-2 chr12 102548465 102548872 + 0.714286 NA Intergenic L2|LINE|L2 -68105 NM_000618 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 108.929-6 chr7 3711843 3712052 + 0.714286 NA intron (NM_152744, intron 4 of 44) MIRb|SINE|MIR 410695 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 99.4285-3 chr5 153099547 153099852 + 0.714286 NA Intergenic MSTA1|LTR|ERVL-MaLR -127350 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 99.7142-2 chr6 74258587 74258874 + 0.714286 NA intron (NR_110856, intron 1 of 3) LTR82B|LTR|ERVL 189279 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 101.143-4 chr12 126676337 126676637 + 0.714286 NA intron (NR_110034, intron 1 of 2) intron (NR_110034, intron 1 of 2) 13831 NR_110034 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 195.357-3 chr20 17253192 17253673 + 0.714286 NA intron (NM_001201529, intron 1 of 10) L1MB7|LINE|L1 26392 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 98.6429-4 chr4 5554880 5555136 + 0.714286 NA Intergenic HAL1|LINE|L1 29852 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 166.929 chr2 35424659 35425007 + 0.714286 NA Intergenic Intergenic -46572 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 131.286-3 chr21 18230905 18231143 + 0.714286 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -13809 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 208.786 chr18 72603843 72604170 + 0.714286 NA Intergenic Intergenic -59664 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 139.5 chr10 84188965 84189187 + 0.714286 NA Intergenic Intergenic -5461 NM_033100 92211 Hs.137556 NM_033100 ENSG00000148600 CDHR1 CORD15|PCDH21|PRCAD|RP65 cadherin related family member 1 protein-coding 192.429 chr8 140082516 140083041 + 0.714286 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 17757 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 178.857-3 chr8 138549211 138549590 + 0.714286 NA Intergenic Intergenic -51670 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 181.286-2 chr11 94942857 94943297 + 0.714286 NA Intergenic MER1B|DNA|hAT-Charlie 30479 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 126-4 chr12 17524615 17524812 + 0.714286 NA Intergenic Intergenic 64365 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 166.214 chr17 53312786 53313238 + 0.714286 NA Intergenic Intergenic 327507 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 111.429-8 chr5 63518367 63518661 + 0.714286 NA Intergenic Intergenic 443778 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 121.786-6 chr5 72135000 72135203 + 0.714286 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 27626 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 115.143 chr1 20031728 20031891 + 0.714286 NA Intergenic LTR46-int|LTR|ERV1 -38385 NM_000929 5322 Hs.319438 NM_000929 ENSG00000127472 PLA2G5 FRFB|GV-PLA2|PLA2-10|hVPLA(2) phospholipase A2 group V protein-coding 114.929-3 chr7 82810029 82810334 + 0.714286 NA intron (NM_033026, intron 20 of 24) intron (NM_033026, intron 20 of 24) 352703 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 140.429-8 chr3 174288031 174288284 + 0.714286 NA 3' UTR (NM_001365935, exon 6 of 6) 3' UTR (NM_001365935, exon 6 of 6) -367361 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 140.429 chr1 236582884 236583378 + 0.714286 NA exon (NM_018072, exon 18 of 45) exon (NM_018072, exon 18 of 45) 21385 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 152.714-3 chr4 61186506 61186808 + 0.714286 NA Intergenic MIRb|SINE|MIR -14573 NM_001371346 118.143-4 chr14 68232230 68232454 + 0.714286 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 396445 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 122.286-4 chr4 65012516 65012809 + 0.714286 NA Intergenic Intergenic -8162 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 132.857-2 chr14 57772230 57772603 + 0.714286 NA intron (NR_159373, intron 1 of 10) L1PB4|LINE|L1 92583 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 168.857 chr12 13025623 13025894 + 0.714286 NA Intergenic L1MC5a|LINE|L1 -18623 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 242.429 chr5 149058482 149058932 + 0.714286 NA intron (NM_024577, intron 1 of 16) intron (NM_024577, intron 1 of 16) 3702 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 96.7143 chr1 98077053 98077221 + 0.714286 NA Intergenic Intergenic -27444 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 175.857-2 chr7 2614382 2614825 + 0.714286 NA 3' UTR (NM_152558, exon 22 of 22) 3' UTR (NM_152558, exon 22 of 22) -17383 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 113.286 chr1 203204174 203204495 + 0.714286 NA Intergenic Intergenic -17630 NM_001276 1116 Hs.382202 NM_001276 ENSG00000133048 CHI3L1 ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 chitinase 3 like 1 protein-coding 125.429-6 chr4 144697101 144697551 + 0.714286 NA intron (NM_022475, intron 4 of 12) intron (NM_022475, intron 4 of 12) 51170 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 177.643 chr7 4877018 4877684 + 0.714286 NA intron (NM_018059, intron 2 of 14) AluJr|SINE|Alu 6365 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 104.571-3 chr1 181713396 181713591 + 0.714286 NA intron (NM_001205293, intron 8 of 47) intron (NM_001205293, intron 8 of 47) 229976 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 115.429-4 chr17 68020728 68020925 + 0.714286 NA Intergenic Intergenic -14909 NM_002266 3838 Hs.594238 NM_002266 ENSG00000182481 KPNA2 IPOA1|QIP2|RCH1|SRP1-alpha|SRP1alpha karyopherin subunit alpha 2 protein-coding 182.143-2 chr8 74119617 74119954 + 0.714286 NA Intergenic Intergenic 128393 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 122.5 chr11 77593683 77593977 + 0.714286 NA intron (NM_001363477, intron 1 of 1) intron (NM_001363477, intron 1 of 1) 3877 NM_173039 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 190.429-2 chrX 102667115 102667446 + 0.714286 NA intron (NR_146585, intron 2 of 6) L1PA10|LINE|L1 7297 NR_146585 100528062 Hs.522729 NM_001199818 ENSG00000286237 ARMCX5-GPRASP2 ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP ARMCX5-GPRASP2 readthrough protein-coding 140.857-3 chr6 160498291 160498661 + 0.714286 NA intron (NR_028092, intron 2 of 9) L1MEf|LINE|L1 12648 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 99.3572-3 chr2 181057040 181057291 + 0.714286 NA intron (NM_001278555, intron 3 of 5) L1MC4|LINE|L1 -66672 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 152.143-4 chr7 107427012 107427424 + 0.714286 NA intron (NM_181733, intron 6 of 20) intron (NM_181733, intron 6 of 20) -42839 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 151.286-3 chr6 76913173 76913436 + 0.714286 NA Intergenic L1MB3|LINE|L1 -319681 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 248.714 chr8 124479423 124479985 + 0.714286 NA intron (NM_007218, intron 1 of 1) MER20|DNA|hAT-Charlie 4937 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 97.7858-4 chr7 54298510 54298725 + 0.714286 NA Intergenic Intergenic -32080 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 140.572-2 chr14 67922402 67922619 + 0.714286 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 98918 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 125.571-10 chr3 167380982 167381396 + 0.714286 NA promoter-TSS (NM_024687) promoter-TSS (NM_024687) -892 NM_001199201 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 193.5 chr18 13630385 13630744 + 0.714286 NA intron (NM_001003675, intron 2 of 2) intron (NM_001003675, intron 2 of 2) -11194 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 100.714-2 chr10 77290656 77290910 + 0.714286 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 59978 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 167.286-3 chr14 59807255 59807694 + 0.714286 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 63302 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 115-4 chr4 94702708 94702992 + 0.714286 NA Intergenic Intergenic 54683 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 155-6 chr8 122255400 122255838 + 0.714286 NA Intergenic Intergenic 313025 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 119.143-7 chr3 171192291 171192545 + 0.714286 NA intron (NM_001161563, intron 5 of 31) intron (NM_001161563, intron 5 of 31) -85659 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 102.143-9 chr6 122150225 122150526 + 0.714286 NA Intergenic L1MC|LINE|L1 -249176 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 187.5 chr6 67078531 67078924 + 0.714286 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat -976624 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 120.357-2 chr20 55098829 55099052 + 0.714286 NA Intergenic MLT1F2|LTR|ERVL-MaLR -324103 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 192.571-4 chr6 47398792 47399201 + 0.714286 NA Intergenic Intergenic -78793 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 118.571-4 chr3 11229531 11229795 + 0.714286 NA intron (NM_001098211, intron 1 of 1) MER113|DNA|hAT-Charlie 3682 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 105.572-4 chr8 91605571 91605897 + 0.714286 NA Intergenic MER3|DNA|hAT-Charlie 356415 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 145.571-4 chr8 66601777 66602037 + 0.714286 NA intron (NM_001294282, intron 2 of 14) intron (NM_001294282, intron 2 of 14) 11311 NM_001294282 4603 Hs.445898 NM_001080416 ENSG00000185697 MYBL1 A-MYB|AMYB MYB proto-oncogene like 1 protein-coding 133.428 chr15 79436142 79436512 + 0.714286 NA intron (NM_015206, intron 1 of 3) intron (NM_015206, intron 1 of 3) 3811 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 188.143 chr10 100232667 100233140 + 0.714286 NA 3' UTR (NM_001303405, exon 14 of 14) 3' UTR (NM_001303405, exon 14 of 14) -3293 NM_001320928 1147 Hs.198998 NM_001278 ENSG00000213341 CHUK IKBKA|IKK-alpha|IKK1|IKKA|NFKBIKA|TCF16 component of inhibitor of nuclear factor kappa B kinase complex protein-coding 136.143-3 chr17 58868607 58868833 + 0.714286 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 112851 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 198.429 chr15 37081274 37081722 + 0.714286 NA intron (NM_172316, intron 7 of 12) intron (NM_172316, intron 7 of 12) 17198 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 102.714-9 chr22 42258681 42258993 + 0.714286 NA intron (NM_005650, intron 1 of 5) MER47A|DNA|TcMar-Tigger -10916 NR_036498 388906 Hs.730075 NR_036498 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 98.5715-2 chr18 13710497 13710684 + 0.714286 NA intron (NM_001098801, intron 1 of 4) LTR8B|LTR|ERV1 15968 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 175.714 chr11 114940810 114941240 + 0.714286 NA Intergenic Intergenic 262498 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 165.357 chr2 222890596 222891049 + 0.714286 NA intron (NM_203372, intron 2 of 15) AluSz6|SINE|Alu 29786 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 166.429 chr7 46575786 46576036 + 0.714286 NA Intergenic Intergenic 121211 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 122.714-7 chr4 84847179 84847513 + 0.714286 NA intron (NM_014991, intron 5 of 67) HAL1|LINE|L1 -118270 NR_152774 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 191.571-2 chr8 81617467 81617939 + 0.714286 NA intron (NR_146081, intron 6 of 7) intron (NR_146081, intron 6 of 7) 13574 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 96.8572-5 chr4 85091601 85091863 + 0.714286 NA Intergenic L1MEd|LINE|L1 124248 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 97-2 chr12 38630572 38630735 + 0.714286 NA Intergenic MER57A-int|LTR|ERV1 274938 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 107.929-3 chr6 141412854 141413158 + 0.714286 NA Intergenic L1ME2z|LINE|L1 675793 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 245.5-2 chr16 22690821 22691530 + 0.714286 NA Intergenic Intergenic -122987 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 136.286-5 chr22 34405271 34405727 + 0.714286 NA Intergenic Intergenic -482611 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 114.571-9 chr2 145270603 145271011 + 0.714286 NA Intergenic Intergenic 602840 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 203.572-3 chr6 129936238 129936557 + 0.714286 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -75082 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 114.286 chr1 112092371 112092595 + 0.714286 NA Intergenic MIR|SINE|MIR 101947 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 207.857-2 chr3 129937273 129937584 + 0.714286 NA Intergenic AluSc|SINE|Alu -37292 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 123.714-6 chr4 72778396 72778609 + 0.714286 NA Intergenic Intergenic -209281 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 172.071 chr15 65906296 65906838 + 0.714286 NA intron (NM_032445, intron 20 of 22) intron (NM_032445, intron 20 of 22) 37076 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 124.5-4 chr5 161556692 161556920 + 0.714286 NA Intergenic Intergenic -8402 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 112.429 chr1 115460408 115460656 + 0.714286 NA Intergenic MIRc|SINE|MIR -122296 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 170.714-4 chr7 44120776 44121122 + 0.714286 NA intron (NM_006230, intron 2 of 10) intron (NM_006230, intron 2 of 10) 2559 NM_001256879 5425 Hs.306791 NM_006230 ENSG00000106628 POLD2 - DNA polymerase delta 2, accessory subunit protein-coding 127 chr3 182823665 182823889 + 0.714286 NA intron (NM_014616, intron 2 of 29) intron (NM_014616, intron 2 of 29) 30273 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 179.571-3 chr22 23651521 23651921 + 0.714286 NA intron (NR_024448, intron 11 of 11) intron (NR_024448, intron 11 of 11) -19400 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 120 chr1 111331087 111331381 + 0.714286 NA Intergenic L1MA4A|LINE|L1 -15326 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 98-5 chr22 50619391 50619560 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger 8677 NM_000487 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 133.286 chr12 5995893 5996308 + 0.714286 NA exon (NM_000552, exon 35 of 52) exon (NM_000552, exon 35 of 52) 44083 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 203-2 chr5 107229866 107230336 + 0.714286 NA Intergenic Intergenic -219087 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 108.929-2 chr10 16893804 16894107 + 0.714286 NA intron (NM_001081, intron 54 of 66) L1MDb|LINE|L1 -76501 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 112.429-5 chr18 4361132 4361346 + 0.714286 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 94027 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 138.857-3 chr2 51855451 51855979 + 0.714286 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -514933 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 198.5 chr9 129114723 129115037 + 0.714286 NA intron (NM_001193397, intron 1 of 9) intron (NM_001193397, intron 1 of 9) 3192 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 118.428-2 chr17 62884803 62885069 + 0.714286 NA Intergenic THE1D|LTR|ERVL-MaLR -59279 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 119-6 chr8 100072212 100072524 + 0.714286 NA intron (NM_015668, intron 4 of 27) intron (NM_015668, intron 4 of 27) 33258 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 118.5-3 chr14 70767448 70767724 + 0.714286 NA intron (NM_001284231, intron 1 of 11) intron (NM_001284231, intron 1 of 11) 15866 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 105-7 chr12 22461677 22461902 + 0.714286 NA intron (NM_001286176, intron 22 of 26) intron (NM_001286176, intron 22 of 26) 82408 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 128.214-10 chr8 113516575 113516855 + 0.714286 NA Intergenic L1M6|LINE|L1 -79776 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185.857-2 chr8 82796691 82797210 + 0.714286 NA Intergenic Intergenic -115154 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 119.143 chr1 66318116 66318623 + 0.714286 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -13739 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 162.643-5 chr2 79223376 79223681 + 0.714286 NA Intergenic Intergenic -63775 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 119.286-10 chr7 24974096 24974391 + 0.714286 NA intron (NM_015550, intron 1 of 22) L1MC5|LINE|L1 5935 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 100.286 chr1 202737067 202737257 + 0.714286 NA intron (NM_001314042, intron 21 of 27) intron (NM_001314042, intron 21 of 27) -26708 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 98.9286-5 chr8 14498164 14498431 + 0.714286 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 355213 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 129.857 chr14 63539341 63539628 + 0.714286 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) -3300 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 103.357-7 chr7 22345670 22345933 + 0.714286 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 11353 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 127.143-3 chr21 25627064 25627253 + 0.714286 NA Intergenic Intergenic -12100 NR_072999 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 129.5-4 chr5 53489676 53489893 + 0.714286 NA Intergenic Intergenic 9155 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 120.357-6 chr7 41043752 41044053 + 0.714286 NA Intergenic (ATTTT)n|Simple_repeat|Simple_repeat -57702 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 139.429-9 chr8 134218450 134218872 + 0.714286 NA Intergenic L1PB3|LINE|L1 332165 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 137.643-6 chr4 66277342 66277643 + 0.714286 NA TTS (NR_031673) TTS (NR_031673) 668 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 122.571-2 chr10 114058816 114059007 + 0.714286 NA Intergenic Intergenic 15045 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 184.143 chr18 56871023 56871395 + 0.714286 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 200910 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 126.786-7 chr21 29812799 29813077 + 0.714286 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 64763 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 96.4286-2 chr17 70939853 70940010 + 0.714286 NA Intergenic MER58B|DNA|hAT-Charlie 262248 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 106.714-6 chr12 58158087 58158260 + 0.714286 NA Intergenic Intergenic 70281 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 131-2 chr10 94717651 94718011 + 0.714286 NA intron (NM_000772, intron 5 of 8) L1M3|LINE|L1 34102 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 105.714-4 chr11 82796328 82796525 + 0.714286 NA Intergenic L2|LINE|L2 -62562 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 163.714 chr2 136368054 136368364 + 0.714286 NA Intergenic L1MA8|LINE|L1 -250054 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 190-2 chr12 112320797 112321293 + 0.714286 NA intron (NM_001109662, intron 1 of 75) AluSx|SINE|Alu 61386 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 151 chr1 56314691 56315151 + 0.714286 NA Intergenic Intergenic -100042 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 192.786 chr2 41594863 41595329 + 0.714286 NA Intergenic Intergenic -282459 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 124.857-5 chr4 140524986 140525388 + 0.714286 NA intron (NM_153702, intron 1 of 8) intron (NM_153702, intron 1 of 8) 1019 NM_153702 255520 Hs.450105 NM_153702 ENSG00000179387 ELMOD2 9830169G11Rik ELMO domain containing 2 protein-coding 168.643-2 chr2 24420666 24421182 + 0.714286 NA Intergenic AluJb|SINE|Alu -60388 NM_001348181 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 115.357-8 chr7 82715763 82716066 + 0.714286 NA Intergenic Intergenic -271958 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 132.429-2 chr18 7321072 7321338 + 0.714286 NA Intergenic Charlie7a|DNA|hAT-Charlie 90101 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 145.357-2 chr16 64266087 64266375 + 0.714286 NA Intergenic Intergenic 855832 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 156.857-2 chr14 19916216 19916699 + 0.714286 NA Intergenic MER54B|LTR|ERVL -4150 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 112.286-7 chr18 9587998 9588343 + 0.714286 NA exon (NM_005134, exon 6 of 20) exon (NM_005134, exon 6 of 20) 26389 NM_001042388 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 143.714 chr1 195988870 195989214 + 0.714286 NA Intergenic Intergenic 99673 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 118.071-2 chr11 68584790 68585035 + 0.714286 NA intron (NM_001352358, intron 14 of 22) intron (NM_001352358, intron 14 of 22) -99632 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 109.643-5 chr3 126322773 126323002 + 0.714286 NA Intergenic L1ME3G|LINE|L1 34521 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 197.071 chr15 95927608 95927954 + 0.714286 NA Intergenic MLT1A1|LTR|ERVL-MaLR 200060 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 111.286-2 chr2 193681705 193681944 + 0.714286 NA Intergenic AluY|SINE|Alu -662445 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 161.286 chr14 69868610 69869025 + 0.714286 NA Intergenic Looper|DNA|PiggyBac -10599 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 167.214 chr11 104726002 104726275 + 0.714286 NA Intergenic MER77|LTR|ERVL -116836 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 129.786-5 chr7 47802981 47803175 + 0.714286 NA intron (NM_138295, intron 53 of 56) intron (NM_138295, intron 53 of 56) 7787 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 167.5 chr17 49035003 49035415 + 0.714286 NA intron (NM_001160423, intron 5 of 12) L1M4|LINE|L1 37824 NM_006546 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 141.857-4 chr2 51025919 51026324 + 0.714286 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 6011 NM_001330078 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 167.286-2 chr10 73922071 73922435 + 0.714286 NA intron (NR_160938, intron 1 of 4) intron (NR_160938, intron 1 of 4) 524 NR_160938 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 126.786-6 chr2 214905911 214906259 + 0.714286 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 59138 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 129.714-4 chr2 165503860 165504058 + 0.714286 NA intron (NM_001172173, intron 2 of 6) intron (NM_001172173, intron 2 of 6) 34261 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 127.643-2 chr4 89516120 89516310 + 0.714286 NA Intergenic Intergenic -208415 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 152.643-4 chr8 48222215 48222575 + 0.714286 NA Intergenic Intergenic 213964 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 125.786-4 chr7 22196546 22196868 + 0.714286 NA intron (NM_012294, intron 9 of 25) L2a|LINE|L2 -1897 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 106.143-5 chr2 32732810 32732987 + 0.714286 NA intron (NM_017735, intron 10 of 19) intron (NM_017735, intron 10 of 19) -92535 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 119.286 chr11 84220267 84220553 + 0.714286 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 52870 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 152.5-2 chr15 95986816 95987194 + 0.714286 NA Intergenic Intergenic 140836 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 106.714-13 chr6 146269354 146269545 + 0.714286 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 240251 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 104.929-6 chr3 63496117 63496429 + 0.714286 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 52961 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 104.214-4 chr17 82007424 82007698 + 0.714286 NA intron (NR_045351, intron 6 of 14) intron (NR_045351, intron 6 of 14) 15317 NM_001271007 201254 Hs.37616 NM_144998 ENSG00000169689 CENPX CENP-X|D9|FAAP10|MHF2|STRA13 centromere protein X protein-coding 183.286 chr11 88202005 88202293 + 0.714286 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 25647 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 103.571-10 chr6 150434914 150435112 + 0.714286 NA Intergenic Intergenic 66001 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 151.572 chr10 116034301 116034573 + 0.714286 NA Intergenic L1M4b|LINE|L1 160352 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 177.857 chr1 195355358 195355770 + 0.714286 NA Intergenic L1MCa|LINE|L1 733151 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 107.857 chr14 35104737 35104953 + 0.714286 NA intron (NR_110415, intron 3 of 4) AluSx1|SINE|Alu 17697 NM_001305155 55012 Hs.530712 NM_017917 ENSG00000092020 PPP2R3C C14orf10|G4-1|G5pr|GDRM|SPGF36 protein phosphatase 2 regulatory subunit B''gamma protein-coding 195.857-3 chr8 127056354 127057048 + 0.714286 NA Intergenic L1ME3D|LINE|L1 -23173 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 180.286-3 chr2 182010199 182010472 + 0.714286 NA intron (NM_001261425, intron 2 of 5) L1MA3|LINE|L1 24482 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 105.714-8 chr2 239447736 239448005 + 0.714286 NA Intergenic L1ME3B|LINE|L1 46122 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 234.286-2 chr2 112182119 112182762 + 0.714286 NA intron (NM_153214, intron 5 of 7) intron (NM_153214, intron 5 of 7) 44055 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 176.429-3 chr18 57579689 57580061 + 0.714286 NA intron (NM_001371095, intron 3 of 11) intron (NM_001371095, intron 3 of 11) 6827 NM_001012515 2235 Hs.365365 NM_000140 ENSG00000066926 FECH EPP|EPP1|FCE ferrochelatase protein-coding 143.714-4 chr4 77365500 77365717 + 0.714286 NA Intergenic MLT2A2|LTR|ERVL -146145 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 163.571 chr4 114962076 114962367 + 0.714286 NA intron (NM_022569, intron 4 of 13) L1MB8|LINE|L1 151399 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 135-11 chr5 41035731 41036063 + 0.714286 NA intron (NM_173489, intron 21 of 41) L1PA16|LINE|L1 35445 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 122.286-8 chr6 73496109 73496331 + 0.714286 NA intron (NM_133645, intron 11 of 12) intron (NM_133645, intron 11 of 12) 22218 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 114.786-6 chr7 6200347 6200537 + 0.714286 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) -28305 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 110.714-2 chr11 80283646 80283951 + 0.714286 NA Intergenic L2c|LINE|L2 479005 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 165.643-2 chr4 29604056 29604331 + 0.714286 NA Intergenic Intergenic 389901 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 134.214-4 chr2 43624532 43624806 + 0.714286 NA Intergenic Intergenic -12591 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 117.071-6 chr6 51038321 51038484 + 0.714286 NA Intergenic Intergenic 219531 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 101-4 chr17 54617603 54617889 + 0.714286 NA Intergenic Intergenic -282945 NM_001321173 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 130.143-6 chr7 4294597 4294974 + 0.714286 NA Intergenic Tigger7|DNA|TcMar-Tigger -159948 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 124.643 chr1 196623146 196623405 + 0.714286 NA Intergenic Intergenic -14835 NR_146057 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 115-3 chr4 30629211 30629392 + 0.714286 NA Intergenic Intergenic -91068 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 177.714 chr10 78186742 78187162 + 0.714286 NA Intergenic Intergenic -61673 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 114.286-4 chr16 79415501 79415902 + 0.714286 NA Intergenic Intergenic 185036 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 107.286-2 chr12 4661304 4661596 + 0.714286 NA intron (NM_005002, intron 5 of 10) L2a|LINE|L2 12336 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 100.714-13 chr5 152903017 152903211 + 0.714286 NA intron (NR_109877, intron 2 of 4) L1M5|LINE|L1 69235 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 111.429-2 chr10 79389589 79389846 + 0.714286 NA intron (NM_153367, intron 3 of 3) AluSz|SINE|Alu 42248 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 158.571-3 chr5 24641554 24641901 + 0.714286 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 3251 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 266.143 chr8 99824115 99824849 + 0.714286 NA intron (NM_017890, intron 51 of 61) intron (NM_017890, intron 51 of 61) 69225 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 121.286-5 chr2 159555130 159555659 + 0.714286 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -59900 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 169.857-2 chr5 82114461 82114922 + 0.714286 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 142668 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 201.857 chr11 103155284 103155783 + 0.714286 NA intron (NM_001377, intron 25 of 88) intron (NM_001377, intron 25 of 88) 46107 NM_001377 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 128.929-6 chr7 99032558 99032748 + 0.714286 NA intron (NR_110102, intron 4 of 5) AluSz6|SINE|Alu 19488 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 143.429-5 chr13 48831917 48832265 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger -143821 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 172.714-3 chr6 49661304 49661761 + 0.714286 NA Intergenic L1MB3|LINE|L1 -24658 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 105.643-2 chr10 32833211 32833547 + 0.714286 NA intron (NM_001321115, intron 33 of 43) intron (NM_001321115, intron 33 of 43) 68093 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 157.857 chr9 7777888 7778140 + 0.714286 NA Intergenic Intergenic 21764 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 170.429-5 chr6 125963609 125964010 + 0.714286 NA intron (NM_138571, intron 1 of 4) MER106B|DNA|hAT-Charlie 7039 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 128.714-3 chr3 114510777 114510967 + 0.714286 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 57279 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 113.857-11 chr9 81297511 81297811 + 0.714286 NA Intergenic L1MCa|LINE|L1 391874 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 181.857-2 chr8 139215567 139216070 + 0.714286 NA Intergenic Intergenic -301777 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 163.857-2 chr2 28203262 28203690 + 0.714286 NA intron (NR_120504, intron 1 of 2) L1ME5|LINE|L1 3485 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 121.429-5 chr8 133700855 133701123 + 0.714286 NA Intergenic MLT1L|LTR|ERVL-MaLR -16923 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 105-13 chr5 87637215 87637415 + 0.714286 NA Intergenic UCON97|DNA|DNA -24727 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 157-2 chr17 80929434 80929873 + 0.714286 NA intron (NM_020761, intron 24 of 33) intron (NM_020761, intron 24 of 33) 41560 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 150.857-3 chr5 166346589 166347054 + 0.714286 NA Intergenic Intergenic 579549 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 152.286-2 chr12 39696616 39696875 + 0.714286 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 70562 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 97.1429-5 chr9 37254247 37254401 + 0.714286 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 133726 NM_001289121 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 112.429-6 chr19 28239748 28239991 + 0.714286 NA Intergenic L1MD2|LINE|L1 -366819 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 151.786 chr1 71574777 71575011 + 0.714286 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 262118 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 157.5 chr14 20291289 20291588 + 0.714286 NA intron (NM_138376, intron 9 of 9) MIRb|SINE|MIR 14513 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 160.143 chr10 110877216 110877471 + 0.714286 NA intron (NM_145341, intron 3 of 12) FLAM_A|SINE|Alu 5415 NM_014456 27250 Hs.711490 NM_014456 ENSG00000150593 PDCD4 H731 programmed cell death 4 protein-coding 129-4 chr5 62081866 62082062 + 0.714286 NA Intergenic Intergenic -224198 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 97.8572-3 chr6 122725744 122725971 + 0.714286 NA 3' UTR (NM_001270395, exon 5 of 5) 3' UTR (NM_001270395, exon 5 of 5) -23344 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 96.3572-3 chr3 124708376 124708510 + 0.714286 NA intron (NM_007064, intron 24 of 26) L1MEf|LINE|L1 -21923 NR_033437 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 101.071-3 chr3 88674315 88674531 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger 335967 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 149.786-6 chr4 30890078 30890405 + 0.714286 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 169872 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 151.929-4 chr4 38334404 38334862 + 0.714286 NA Intergenic Intergenic -32281 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 127.5 chr1 174564463 174564752 + 0.714286 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 116643 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 122.857-9 chr5 165085885 165086147 + 0.714286 NA Intergenic Intergenic 615737 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 147.571 chr12 30791062 30791460 + 0.714286 NA Intergenic LTR39|LTR|ERV1 -4420 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 112.286-13 chr3 85509053 85509271 + 0.714286 NA intron (NM_001256502, intron 1 of 10) intron (NM_001256502, intron 1 of 10) 4103 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 148-6 chr2 30324318 30324834 + 0.714286 NA Intergenic MIRc|SINE|MIR -22070 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 161.357-3 chr13 110911598 110911860 + 0.714286 NA intron (NR_104587, intron 1 of 6) AluSx|SINE|Alu 3340 NR_104586 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 111.071 chr11 45897282 45897529 + 0.714286 NA intron (NM_005456, intron 1 of 11) intron (NM_005456, intron 1 of 11) 9866 NM_001080446 143678 NM_001080446 ENSG00000234776 C11orf94 - chromosome 11 open reading frame 94 protein-coding 118.357-2 chr20 14487509 14487798 + 0.714286 NA intron (NM_001351663, intron 3 of 17) L2b|LINE|L2 -66731 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 125.429-3 chr2 219205091 219205350 + 0.714286 NA Intergenic Intergenic -1562 NM_138802 130617 Hs.534540 NM_138802 ENSG00000158552 ZFAND2B AIRAPL zinc finger AN1-type containing 2B protein-coding 155.857-2 chr2 88292814 88293138 + 0.714286 NA Intergenic L1MEf|LINE|L1 119837 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 141.714-4 chr2 122632422 122632861 + 0.714286 NA Intergenic Intergenic 440840 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 99.8572-5 chr6 41967085 41967305 + 0.714286 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) -25347 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 206.571 chr10 110291395 110291979 + 0.714286 NA 3' UTR (NM_005871, exon 6 of 6) 3' UTR (NM_005871, exon 6 of 6) 13233 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 175.214-3 chr18 13555023 13555776 + 0.714286 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -55715 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 136.143 chr13 63575549 63575814 + 0.714286 NA Intergenic Intergenic -161754 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 127.857-7 chr5 150974818 150975060 + 0.714286 NA Intergenic Intergenic -28355 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 112.429-3 chr12 21268427 21268648 + 0.714286 NA 3' UTR (NM_134431, exon 16 of 16) 3' UTR (NM_134431, exon 16 of 16) 66380 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 146.786 chr1 245730684 245731145 + 0.714286 NA Intergenic L1MA3|LINE|L1 -496397 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 99.8571-5 chr14 50284305 50284511 + 0.714286 NA intron (NM_024884, intron 4 of 9) intron (NM_024884, intron 4 of 9) 15538 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 190 chr1 86063886 86064325 + 0.714286 NA intron (NM_152890, intron 7 of 59) intron (NM_152890, intron 7 of 59) 92366 NR_146345 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 121-2 chr10 110428900 110429086 + 0.714286 NA Intergenic Intergenic -68914 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 108.714-2 chr11 114398557 114398725 + 0.714286 NA 3' UTR (NM_001271562, exon 1 of 1) 3' UTR (NM_001271562, exon 1 of 1) 1870 NM_019021 54494 Hs.715083 NM_019021 ENSG00000180425 C11orf71 URLC7 chromosome 11 open reading frame 71 protein-coding 182 chr2 66882253 66882852 + 0.714286 NA Intergenic Tigger3a|DNA|TcMar-Tigger -21884 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 101.786-2 chr1 163348704 163348943 + 0.714286 NA intron (NM_145697, intron 12 of 13) intron (NM_145697, intron 12 of 13) 26869 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 137.429-4 chr2 62334393 62334610 + 0.714286 NA Intergenic Intergenic 118980 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 167.929 chr10 15184445 15184936 + 0.714286 NA Intergenic Intergenic -15997 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 179.571-2 chr2 104350838 104351123 + 0.714286 NA Intergenic Intergenic 57352 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 105.357-4 chr3 58542991 58543212 + 0.714286 NA Intergenic L1M1|LINE|L1 -5911 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 122.286 chr10 47339300 47339548 + 0.714286 NA Intergenic Intergenic -8939 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 178.429-3 chr7 123695909 123696205 + 0.714286 NA intron (NM_003941, intron 6 of 10) MIRc|SINE|MIR 40191 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 147-2 chr13 113071372 113071722 + 0.714286 NA intron (NM_001366646, intron 7 of 27) L1MD1|LINE|L1 26901 NM_001366646 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 106.286-2 chr2 64245282 64245451 + 0.714286 NA intron (NR_120420, intron 2 of 4) intron (NR_120420, intron 2 of 4) 16965 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 110.5-7 chr2 115219963 115220248 + 0.714286 NA intron (NM_001321906, intron 2 of 26) MIR|SINE|MIR 57950 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 172.857-3 chr3 47066797 47067053 + 0.714286 NA intron (NR_146158, intron 14 of 21) intron (NR_146158, intron 14 of 21) 55383 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 112.286-3 chr11 10539705 10539981 + 0.714286 NA intron (NM_016422, intron 1 of 5) intron (NM_016422, intron 1 of 5) 1344 NM_016422 50862 Hs.44685 NM_016422 ENSG00000110315 RNF141 RFP141|ZFP26|ZNF230 ring finger protein 141 protein-coding 106.429 chr1 171517655 171517834 + 0.714286 NA exon (NM_015172, exon 6 of 34) exon (NM_015172, exon 6 of 34) 32214 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 179.429-3 chr3 26621236 26621732 + 0.714286 NA Intergenic Intergenic -1322 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 154.143-2 chr3 144298776 144299161 + 0.714286 NA Intergenic L1M1|LINE|L1 325887 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 143.571-2 chr2 185284014 185284377 + 0.714286 NA Intergenic L1MC2|LINE|L1 -117123 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 147.857-2 chr13 64041770 64042175 + 0.714286 NA intron (NR_145420, intron 1 of 5) intron (NR_145420, intron 1 of 5) 34039 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 98.3571-11 chrM 10794 11100 + 0.714286 NA Intergenic Intergenic -3433 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 184.714-2 chr5 9459510 9459929 + 0.714286 NA intron (NM_003966, intron 1 of 22) MLT1E2|LTR|ERVL-MaLR -51614 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 118.714-2 chr1 227691488 227691698 + 0.714286 NA Intergenic Intergenic 6114 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 126.071-2 chr8 9849665 9849916 + 0.714286 NA Intergenic L1ME3B|LINE|L1 53539 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 143.357-4 chrX 95594902 95595377 + 0.714286 NA Intergenic L1MB3|LINE|L1 -531913 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 243.428 chr2 190287313 190287908 + 0.714286 NA exon (NM_014362, exon 6 of 14) exon (NM_014362, exon 6 of 14) 32216 NM_198047 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 217.214 chr20 59590905 59591341 + 0.714286 NA intron (NM_001199505, intron 1 of 12) MER3|DNA|hAT-Charlie -13417 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 213.571-2 chr12 105353478 105353846 + 0.714286 NA intron (NM_001145199, intron 2 of 5) intron (NM_001145199, intron 2 of 5) 22971 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 144.143-3 chr19 49817062 49817338 + 0.714286 NA Intergenic Intergenic -1079 NM_030973 81857 Hs.656639 NM_030973 ENSG00000104973 MED25 ACID1|ARC92|BVSYS|CMT2B2|P78|PTOV2|TCBAP0758 mediator complex subunit 25 protein-coding 133.857-5 chr20 45333487 45333750 + 0.714286 NA intron (NM_002999, intron 2 of 4) AluSz|SINE|Alu 14806 NM_002999 6385 Hs.632267 NM_002999 ENSG00000124145 SDC4 SYND4 syndecan 4 protein-coding 178.714-2 chr18 68875186 68875487 + 0.714286 NA intron (NM_001093729, intron 7 of 9) intron (NM_001093729, intron 7 of 9) 77256 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 148.214 chr20 36600008 36600293 + 0.714286 NA intron (NM_001199535, intron 2 of 4) L1MB3|LINE|L1 -5629 NM_018840 55969 Hs.584985 NM_018840 ENSG00000101084 RAB5IF C20orf24|PNAS-11|RIP5 RAB5 interacting factor protein-coding 127.643-3 chr5 4994653 4994835 + 0.714286 NA Intergenic Intergenic -39615 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 108.143-9 chr3 79439798 79440222 + 0.714286 NA intron (NM_002941, intron 2 of 30) L2c|LINE|L2 28283 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 135.786-2 chr2 69787048 69787515 + 0.714286 NA intron (NM_001320702, intron 2 of 12) L1MC5|LINE|L1 -42379 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 165-3 chr4 28048991 28049379 + 0.714286 NA Intergenic L1MA2|LINE|L1 -770397 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 119.643-5 chrX 6189013 6189232 + 0.714286 NA intron (NM_001282145, intron 1 of 6) MIR3|SINE|MIR -37236 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 163.214-4 chr4 66924042 66924434 + 0.714286 NA Intergenic Intergenic 497762 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 148.071-4 chr3 30196726 30197128 + 0.714286 NA Intergenic Intergenic -262771 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 218.929 chr10 65022638 65023018 + 0.714286 NA Intergenic L1MC|LINE|L1 -98310 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 169.143-3 chr6 150376602 150376998 + 0.714286 NA intron (NM_001318495, intron 1 of 4) AluJr4|SINE|Alu 7788 NM_001164695 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 108.143-5 chr12 117343188 117343486 + 0.714286 NA intron (NM_000620, intron 1 of 28) intron (NM_000620, intron 1 of 28) 18289 NM_000620 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 149.643-5 chr7 40181806 40182190 + 0.714286 NA exon (NM_001193313, exon 3 of 14) exon (NM_001193313, exon 3 of 14) 47022 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 194.714 chr2 157689548 157689882 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger -60851 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 103.429-11 chr7 78287558 78288023 + 0.714286 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -59452 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 151.929-5 chr5 129786698 129787088 + 0.714286 NA Intergenic AluJo|SINE|Alu 38799 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 124.643-7 chr8 79106328 79106661 + 0.714286 NA Intergenic Intergenic -225694 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 137.143 chr1 104754242 104754542 + 0.714286 NA Intergenic L1MEg|LINE|L1 681369 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 126.5-3 chr13 36425929 36426290 + 0.714286 NA Intergenic L1MA2|LINE|L1 -5721 NM_001111047 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 172.857 chr17 66695519 66695832 + 0.714286 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -91397 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 120-3 chr11 58505063 58505362 + 0.714286 NA Intergenic L1PB2|LINE|L1 2893 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 118.071-9 chr5 111222130 111222580 + 0.714286 NA Intergenic MER1A|DNA|hAT-Charlie -1228 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 120.857 chr1 180400226 180400515 + 0.714286 NA intron (NM_032360, intron 5 of 7) intron (NM_032360, intron 5 of 7) 38020 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 101.429-2 chr5 42753812 42753992 + 0.714286 NA Intergenic Intergenic -2916 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 153.572 chr10 81998825 81999214 + 0.714286 NA intron (NR_163253, intron 2 of 10) AluSx1|SINE|Alu 121332 NM_001165973 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 100.143-3 chr13 105292159 105292588 + 0.714286 NA Intergenic Intergenic -173494 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 155-2 chr11 68902515 68902892 + 0.714286 NA intron (NM_181515, intron 1 of 6) L1MC1|LINE|L1 1129 NM_181514 219927 Hs.503047 NM_181512 ENSG00000197345 MRPL21 L21mt|MRP-L21 mitochondrial ribosomal protein L21 protein-coding 137.786-2 chr8 128332567 128332863 + 0.714286 NA Intergenic Intergenic 182599 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 199.857 chr17 75013526 75013988 + 0.714286 NA intron (NM_001545, intron 1 of 5) L2a|LINE|L2 1087 NM_001545 3396 Hs.407955 NM_001545 ENSG00000167862 MRPL58 DS-1|DS1|ICT1|MRP-L58 mitochondrial ribosomal protein L58 protein-coding 113.571 chr1 199831967 199832183 + 0.714286 NA Intergenic Intergenic -195635 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 112.857-13 chr8 89773985 89774214 + 0.714286 NA intron (NM_003821, intron 6 of 10) FAM|SINE|Alu 16283 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 129.714-6 chr6 165969873 165970221 + 0.714286 NA intron (NR_026860, intron 1 of 1) L1MC4|LINE|L1 -17504 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 136.5-3 chr17 58709138 58709539 + 0.714286 NA intron (NM_058216, intron 4 of 8) AluSg4|SINE|Alu 16736 NM_058216 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 206.143 chr2 75858182 75858611 + 0.714286 NA Intergenic Intergenic -147481 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 135.5-2 chr11 33464220 33464654 + 0.714286 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 88329 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 146.143-5 chr7 54209224 54209654 + 0.714286 NA Intergenic L1ME3B|LINE|L1 -121258 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 127.143-7 chr5 181028335 181028564 + 0.714286 NA Intergenic L1MA8|LINE|L1 -11817 NM_001308245 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 144.286-5 chr8 128116307 128116691 + 0.714286 NA Intergenic AluY|SINE|Alu -33617 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 98.9286-2 chr2 99468443 99468687 + 0.714286 NA intron (NR_135652, intron 1 of 21) intron (NR_135652, intron 1 of 21) 21452 NM_001321460 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 149.5 chr10 32090008 32090460 + 0.714286 NA Intergenic L1PA16|LINE|L1 -33809 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 111.286-7 chr3 67823841 67824091 + 0.714286 NA intron (NR_109992, intron 3 of 6) L1MDa|LINE|L1 -167626 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 118.286-6 chr6 67694820 67695005 + 0.714286 NA Intergenic Intergenic -360439 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 157.5-2 chr4 85147106 85147415 + 0.714286 NA Intergenic MIRb|SINE|MIR 179776 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 114.714-6 chr7 31184943 31185157 + 0.714286 NA Intergenic Intergenic 132589 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 118.214-3 chr2 61018895 61019160 + 0.714286 NA promoter-TSS (NM_001322127) promoter-TSS (NM_001322127) -768 NM_001322127 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 193 chr7 107996254 107996649 + 0.714286 NA intron (NM_002291, intron 4 of 33) intron (NM_002291, intron 4 of 33) 6710 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 104.143-6 chr18 43368054 43368231 + 0.714286 NA Intergenic Intergenic -90652 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 103.357-6 chr5 76428620 76428836 + 0.714286 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 25443 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 125-3 chr12 11768362 11768642 + 0.714286 NA intron (NM_001987, intron 2 of 7) MIRb|SINE|MIR 118648 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 105.643-10 chr20 38603199 38603474 + 0.714286 NA intron (NM_001164431, intron 1 of 14) intron (NM_001164431, intron 1 of 14) 1527 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 129.143-8 chr6 75931745 75932081 + 0.714286 NA intron (NM_001563, intron 14 of 16) intron (NM_001563, intron 14 of 16) 140749 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 156.429-3 chr7 55196853 55197417 + 0.714286 NA intron (NM_001346941, intron 16 of 21) L1PA13|LINE|L1 -8186 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 102.429-5 chr5 109615290 109615454 + 0.714286 NA Intergenic Intergenic -73994 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 123.643-4 chr8 138788949 138789308 + 0.714286 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 124913 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 120.857-2 chr11 61544788 61545181 + 0.714286 NA intron (NM_001365809, intron 5 of 12) intron (NM_001365809, intron 5 of 12) -2108 NM_001370210 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 155.714-6 chr8 100881103 100881522 + 0.714286 NA Intergenic L1MC4|LINE|L1 69259 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 107.786-6 chr5 125653931 125654211 + 0.714286 NA Intergenic L2|LINE|L2 160810 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 199.143-2 chr5 107376087 107376403 + 0.714286 NA TTS (NM_001962) TTS (NM_001962) 294692 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 157.072 chr18 7852433 7852886 + 0.714286 NA intron (NM_002845, intron 2 of 30) AluYj4|SINE|Alu 285343 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 116.714-9 chr8 136903726 136904011 + 0.714286 NA Intergenic Intergenic 373070 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 147.429-4 chr4 85415589 85415887 + 0.714286 NA Intergenic Intergenic -59412 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 147.143-5 chr8 36734656 36734927 + 0.714286 NA Intergenic MER96B|DNA|hAT-Tip100 -49583 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 142.5 chr3 31998948 31999305 + 0.714286 NA Intergenic (TCTGCTG)n|Simple_repeat|Simple_repeat -17276 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 143-5 chr4 76472821 76473215 + 0.714286 NA intron (NM_020859, intron 1 of 10) L1MB7|LINE|L1 37789 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 149.643-3 chr20 45453007 45453394 + 0.714286 NA Intergenic L3|LINE|CR1 -16553 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 122.428-2 chr3 120506055 120506341 + 0.714286 NA Intergenic MER50|LTR|ERV1 -55206 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 211.071 chr15 83232553 83233036 + 0.714286 NA Intergenic ERVL-E-int|LTR|ERVL -24971 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 127.429-3 chr11 76435285 76435520 + 0.714286 NA Intergenic L1ME3F|LINE|L1 -9616 NM_001300942 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 122.429 chr7 105255228 105255429 + 0.714286 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 13749 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 191.571 chr15 60040343 60040784 + 0.714286 NA Intergenic Intergenic 36252 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 116.429 chr1 174912535 174912764 + 0.714286 NA intron (NM_001366451, intron 5 of 12) intron (NM_001366451, intron 5 of 12) 37131 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 185.857-3 chr9 35739805 35740227 + 0.714286 NA exon (NM_001330660, exon 8 of 17) exon (NM_001330660, exon 8 of 17) 7094 NR_106912 102466201 NR_106912 ENSG00000273945 MIR6853 hsa-mir-6853 microRNA 6853 ncRNA 173.786 chr12 130519572 130520426 + 0.714286 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 108457 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 108-11 chr2 210775319 210775506 + 0.714286 NA Intergenic MSTA|LTR|ERVL-MaLR 157841 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 162.429-3 chr3 172827724 172828198 + 0.714286 NA Intergenic L1M5|LINE|L1 76959 NM_001349101 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 130.214 chr10 27138037 27138509 + 0.714286 NA intron (NM_001253866, intron 3 of 17) intron (NM_001253866, intron 3 of 17) 16111 NM_014263 10730 Hs.74647 NM_014263 ENSG00000136758 YME1L1 FTSH|MEG4|OPA11|PAMP|YME1L YME1 like 1 ATPase protein-coding 146.857-3 chr20 31758849 31759228 + 0.714286 NA intron (NM_012112, intron 3 of 17) intron (NM_012112, intron 3 of 17) 19748 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 115.357-7 chr6 132021737 132022014 + 0.714286 NA Intergenic Intergenic -70503 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 178.714 chr12 28829222 28829642 + 0.714286 NA Intergenic L1MEc|LINE|L1 -319846 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 258.571 chr5 39879370 39879942 + 0.714286 NA Intergenic AluSp|SINE|Alu -172635 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 109.857-5 chr7 21761143 21761331 + 0.714286 NA intron (NM_001277115, intron 54 of 81) intron (NM_001277115, intron 54 of 81) 184662 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 101.143-17 chr9 123590254 123590520 + 0.714286 NA intron (NM_001352968, intron 10 of 18) MIR|SINE|MIR -104765 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 180-2 chr22 27485098 27485534 + 0.714286 NA Intergenic Intergenic 174665 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 192.286 chr7 54460325 54460773 + 0.714286 NA Intergenic HAL1b|LINE|L1 -81776 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 128.857-7 chrX 27527991 27528222 + 0.714286 NA Intergenic (ATTTA)n|Simple_repeat|Simple_repeat -62238 NM_001353449 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 167.857 chr15 69924197 69924502 + 0.714286 NA Intergenic L1MEd|LINE|L1 89115 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 157.714-2 chr14 42807263 42807570 + 0.714286 NA Intergenic Intergenic 1200560 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 180.286-2 chr17 80414732 80415118 + 0.714286 NA promoter-TSS (NM_001352760) promoter-TSS (NM_001352760) -242 NM_001164637 284131 Hs.389678 NM_173627 ENSG00000173818 ENDOV - endonuclease V protein-coding 114-6 chr19 51558305 51558540 + 0.714286 NA Intergenic Intergenic -12861 NM_007147 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 125-10 chr4 119664649 119664956 + 0.714286 NA Intergenic MIRb|SINE|MIR -35998 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 113.786-9 chr8 104136033 104136196 + 0.714286 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -87221 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 102-7 chr4 59702640 59702906 + 0.714286 NA Intergenic Intergenic 689200 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 114.286-6 chr2 227901628 227901891 + 0.714286 NA intron (NM_178821, intron 6 of 12) intron (NM_178821, intron 6 of 12) 30128 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 116.429-3 chr10 119268478 119268715 + 0.714286 NA intron (NM_005308, intron 1 of 15) MIR|SINE|MIR 61025 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 193.857 chr3 55112498 55112875 + 0.714286 NA Intergenic L1ME3B|LINE|L1 -65486 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 113.714-5 chr17 72545986 72546190 + 0.714286 NA intron (NR_036488, intron 1 of 3) MER33|DNA|hAT-Charlie 46716 NR_137280 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 111.857-7 chr18 77890800 77891069 + 0.714286 NA Intergenic Intergenic 102793 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 122.857-12 chr8 144098977 144099312 + 0.714286 NA exon (NM_030974, exon 7 of 9) exon (NM_030974, exon 7 of 9) 4068 NM_001916 1537 Hs.289271 NM_001916 ENSG00000179091 CYC1 MC3DN6|UQCR4 cytochrome c1 protein-coding 113-2 chr10 99964481 99964805 + 0.714286 NA intron (NM_015221, intron 3 of 16) AluSz|SINE|Alu -33736 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 134.571-12 chr5 127742391 127742610 + 0.714286 NA intron (NM_001317938, intron 2 of 6) intron (NM_001317938, intron 2 of 6) 39111 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 137.857-3 chr3 156846141 156846429 + 0.714286 NA intron (NM_001004316, intron 2 of 12) L1MD1|LINE|L1 19932 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 103.571-4 chr17 57522472 57522635 + 0.714286 NA non-coding (NR_110808, exon 3 of 3) non-coding (NR_110808, exon 3 of 3) 1044 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 138.214 chr10 61718824 61719123 + 0.714286 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 56012 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 183.572 chr7 43182771 43183137 + 0.714286 NA intron (NM_015052, intron 2 of 29) L1MA6|LINE|L1 32059 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 125.571-6 chr15 71902999 71903227 + 0.714286 NA intron (NM_006901, intron 21 of 41) intron (NM_006901, intron 21 of 41) 92559 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 105.714-10 chr4 137399722 137400044 + 0.714286 NA Intergenic MARNA|DNA|TcMar-Mariner 132611 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 136.714-8 chr20 37995302 37995622 + 0.714286 NA intron (NM_001303457, intron 7 of 7) intron (NM_001303457, intron 7 of 7) 37994 NM_014657 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 130-3 chr4 88745963 88746264 + 0.714286 NA intron (NM_001015045, intron 13 of 17) intron (NM_001015045, intron 13 of 17) 36324 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 127.857-6 chr4 107908159 107908472 + 0.714286 NA intron (NM_152621, intron 4 of 5) intron (NM_152621, intron 4 of 5) 15051 NM_001136257 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 211.429 chr7 4112383 4112765 + 0.714286 NA intron (NM_152744, intron 23 of 44) intron (NM_152744, intron 23 of 44) -17111 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 161.786 chr16 57131891 57132331 + 0.714286 NA intron (NM_152727, intron 12 of 15) intron (NM_152727, intron 12 of 15) 39528 NM_152727 221184 Hs.339809 NM_152727 ENSG00000140848 CPNE2 COPN2|CPN2 copine 2 protein-coding 104.357-5 chr2 52442267 52442445 + 0.714286 NA Intergenic LTR83|LTR|ERVL 71708 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 159.143-2 chr20 18372823 18373138 + 0.714286 NA Intergenic LTR65|LTR|ERV1 -6069 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 203 chr18 75054375 75054794 + 0.714286 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 150929 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 114.643-8 chr5 16903584 16903777 + 0.714286 NA intron (NM_012334, intron 1 of 40) MIRb|SINE|MIR 32608 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 152-4 chr2 68964711 68964960 + 0.714286 NA Intergenic L1MCa|LINE|L1 -9738 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 103.714-7 chr16 11498640 11498795 + 0.714286 NA intron (NM_001370704, intron 10 of 66) intron (NM_001370704, intron 10 of 66) 28530 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 146.214-2 chr4 72053994 72054429 + 0.714286 NA intron (NM_053036, intron 1 of 3) L1M5|LINE|L1 15079 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 139.429-3 chr17 44875705 44876198 + 0.714286 NA exon (NM_001258354, exon 10 of 28) exon (NM_001258354, exon 10 of 28) 23417 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 156.857-4 chr4 48546561 48546802 + 0.714286 NA intron (NM_015030, intron 41 of 63) intron (NM_015030, intron 41 of 63) 56429 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 139.714-2 chr1 50410689 50410982 + 0.714286 NA Intergenic L1MB7|LINE|L1 12608 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 98.1429-3 chr15 59392631 59392768 + 0.714286 NA Intergenic Intergenic -19828 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 228.143 chr8 136904697 136905071 + 0.714286 NA Intergenic MIRb|SINE|MIR 374086 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 148.571 chr8 139214992 139215331 + 0.714286 NA Intergenic Intergenic -301120 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 117.214-6 chr6 57111631 57112002 + 0.714286 NA intron (NM_015555, intron 3 of 13) intron (NM_015555, intron 3 of 13) 21628 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 146.071 chr1 192085262 192085521 + 0.714286 NA Intergenic Arthur1C|DNA|hAT-Tip100 -73071 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 99.5714-2 chr3 96119591 96119858 + 0.714286 NA Intergenic Intergenic -240240 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 102-2 chr13 26379178 26379408 + 0.714286 NA intron (NM_001346501, intron 4 of 11) intron (NM_001346501, intron 4 of 11) 125164 NM_001318368 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 115.929 chr1 42519077 42519461 + 0.714286 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -13751 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 150.714-5 chr3 57651266 57651492 + 0.714286 NA intron (NM_152678, intron 9 of 19) L1MB7|LINE|L1 41698 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 133.643-4 chr20 56392855 56393087 + 0.714286 NA promoter-TSS (NM_003600) promoter-TSS (NM_003600) 326 NM_001324 1477 Hs.172865 NM_001324 ENSG00000101138 CSTF1 CstF-50|CstFp50 cleavage stimulation factor subunit 1 protein-coding 148.857-3 chr11 15030231 15030625 + 0.714286 NA Intergenic MLT1A1|LTR|ERVL-MaLR -43165 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 170.429-4 chr5 85071322 85071658 + 0.714286 NA Intergenic Intergenic -686610 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 177.857-2 chr1 234850451 234850737 + 0.714286 NA Intergenic Intergenic -90538 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 114.857 chr1 229805323 229805489 + 0.714286 NA Intergenic LTR8A|LTR|ERV1 80412 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 188.857 chr14 72743315 72743802 + 0.714286 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 149091 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 124.857-6 chr7 42778930 42779149 + 0.714286 NA Intergenic MSTA-int|LTR|ERVL-MaLR -72592 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 126.714-8 chrX 80575749 80576040 + 0.714286 NA Intergenic L1PREC2|LINE|L1 155447 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 140.571 chr14 42865285 42865727 + 0.714286 NA Intergenic Intergenic 1258650 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 204-2 chr3 88475400 88475915 + 0.714286 NA Intergenic Charlie5|DNA|hAT-Charlie 137201 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 161.143-4 chr3 128111793 128112069 + 0.714286 NA intron (NM_003707, intron 3 of 10) L1ME3G|LINE|L1 11881 NM_001319084 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 124-5 chr14 73318277 73318695 + 0.714286 NA intron (NM_001005743, intron 5 of 12) intron (NM_001005743, intron 5 of 12) -72485 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 102.071-2 chr11 118927903 118928154 + 0.714286 NA Intergenic Intergenic 17320 NR_039713 100616376 NR_039713 ENSG00000264211 MIR4492 mir-4492 microRNA 4492 ncRNA 133.143-3 chr13 94154744 94155017 + 0.714286 NA intron (NR_046535, intron 3 of 3) intron (NR_046535, intron 3 of 3) 33111 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 140-6 chr5 130486803 130487193 + 0.714286 NA Intergenic Intergenic 582533 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 199.643-2 chr4 31887579 31887998 + 0.714286 NA Intergenic Intergenic -109591 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 96.7858-2 chr11 44254802 44254960 + 0.714286 NA Intergenic L1ME1|LINE|L1 55258 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 168.214-3 chr2 73301821 73302115 + 0.714286 NA Intergenic L2c|LINE|L2 -8420 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 113.214 chr6 78151185 78151489 + 0.714286 NA Intergenic Tigger2a|DNA|TcMar-Tigger 387972 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 112.857-4 chr17 60863633 60863853 + 0.714286 NA intron (NM_001330413, intron 7 of 25) AluJr|SINE|Alu 185892 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 112.286-18 chr7 6591056 6591310 + 0.714286 NA intron (NM_001303039, intron 1 of 6) intron (NM_001303039, intron 1 of 6) 1162 NM_024067 79034 Hs.487511 NM_024067 ENSG00000146576 C7orf26 - chromosome 7 open reading frame 26 protein-coding 119.714-8 chr2 233426807 233427127 + 0.714286 NA intron (NM_152879, intron 3 of 29) L1ME3A|LINE|L1 38813 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 134.929-2 chr8 122504543 122504973 + 0.714286 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 63886 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 119.714-13 chr6 89664259 89664518 + 0.714286 NA intron (NM_014611, intron 85 of 101) intron (NM_014611, intron 85 of 101) -25641 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 107-10 chr3 56162295 56162603 + 0.714286 NA intron (NR_132749, intron 4 of 17) L1PA16|LINE|L1 306018 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 108.571-11 chr8 71550464 71550699 + 0.714286 NA Intergenic Intergenic -2487 NM_001370335 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 100.786-7 chr3 182235070 182235241 + 0.714286 NA Intergenic Intergenic 251207 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 147.5-2 chr6 125779427 125779958 + 0.714286 NA Intergenic Intergenic -1423 NM_001199619 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 115.357-9 chr8 129659416 129659605 + 0.714286 NA intron (NR_130917, intron 1 of 3) L1ME4a|LINE|L1 20729 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 167.929-2 chr11 128210311 128210731 + 0.714286 NA intron (NR_146647, intron 1 of 3) intron (NR_146647, intron 1 of 3) 1755 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 108.571-12 chrX 63118985 63119264 + 0.714286 NA Intergenic L1PB4|LINE|L1 232208 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 125.357-9 chr8 115007865 115008108 + 0.714286 NA Intergenic MER4A1|LTR|ERV1 660027 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 265 chr2 144955938 144956412 + 0.714286 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 288208 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 196 chr4 66073592 66074084 + 0.714286 NA Intergenic L1PA15|LINE|L1 -202986 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 144.643-2 chr3 186497536 186497976 + 0.714286 NA Intergenic L1M3e|LINE|L1 -4095 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 155.357-4 chr2 105852040 105852407 + 0.714286 NA intron (NM_001004720, intron 1 of 3) intron (NM_001004720, intron 1 of 3) 376 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 111.429-6 chr19 29988618 29988801 + 0.714286 NA intron (NM_001252641, intron 4 of 10) L1ME1|LINE|L1 46470 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 130.643 chr3 186502847 186503217 + 0.714286 NA Intergenic MER41B|LTR|ERV1 -9371 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 227.572 chr8 49509652 49510082 + 0.714286 NA intron (NR_134294, intron 1 of 1) L1MB3|LINE|L1 2313 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 132-3 chr14 39078532 39078841 + 0.714286 NA intron (NM_006364, intron 7 of 19) L1MEd|LINE|L1 -24454 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 158.929 chr1 117418522 117418894 + 0.714286 NA intron (NM_006699, intron 4 of 12) L1MEd|LINE|L1 51259 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 162.571-3 chr2 13291526 13291829 + 0.714286 NA Intergenic Intergenic -284664 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 101.143-8 chr22 20820872 20821039 + 0.714286 NA intron (NM_058004, intron 4 of 54) L3|LINE|CR1 37856 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 99.2143-7 chrX 5339727 5339865 + 0.714286 NA Intergenic Intergenic -706224 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 104.714 chr11 105623492 105623854 + 0.714286 NA intron (NR_046356, intron 2 of 16) L2a|LINE|L2 12967 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 205.429-2 chr9 100710877 100711305 + 0.714286 NA Intergenic Intergenic 133012 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 136.071-6 chr2 61212503 61212754 + 0.714286 NA intron (NM_014709, intron 68 of 79) intron (NM_014709, intron 68 of 79) 35210 NR_152216 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 135.929-4 chr5 35266623 35266934 + 0.714286 NA Intergenic Intergenic -36291 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 118.571-6 chr5 45087408 45087667 + 0.714286 NA Intergenic Intergenic 278590 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 167.071 chr10 76824200 76824494 + 0.714286 NA Intergenic Intergenic -63697 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 118.929 chr11 113570420 113570805 + 0.714286 NA Intergenic L2c|LINE|L2 -95214 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 100.786-5 chr2 47561779 47562038 + 0.714286 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 8423 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 117.143-9 chr5 14884131 14884499 + 0.714286 NA Intergenic Intergenic -12537 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 157.571 chr1 89616758 89617154 + 0.714286 NA Intergenic Intergenic 15938 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 105.572 chr11 72576943 72577220 + 0.714286 NA 3' UTR (NM_001243784, exon 31 of 31) 3' UTR (NM_001243784, exon 31 of 31) 6425 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 118.857-3 chr20 237147 237748 + 0.714286 NA Intergenic Intergenic 10189 NM_080831 140881 Hs.112087 NM_080831 ENSG00000125903 DEFB129 C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29 defensin beta 129 protein-coding 107.143-9 chr17 55330354 55330533 + 0.714286 NA Intergenic Intergenic 64221 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 117.857-8 chr16 84198267 84198557 + 0.714286 NA Intergenic MLT2B1|LTR|ERVL -1359 NR_147175 654780 Hs.8977 NM_001039504 ENSG00000250685 LOC654780 SFPQ splicing factor proline/glutamine-rich ncRNA 225.929 chr17 55763432 55764086 + 0.714286 NA intron (NM_001102402, intron 1 of 5) intron (NM_001102402, intron 1 of 5) 12654 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 111.857 chr1 168635295 168635504 + 0.714286 NA Intergenic Intergenic 58794 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 214.214 chr8 120974838 120975308 + 0.714286 NA Intergenic Intergenic -163027 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 98.5714-5 chr5 9737839 9738018 + 0.714286 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -107577 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 126.429-4 chr20 49555639 49555929 + 0.714286 NA intron (NM_000961, intron 1 of 9) MER4-int|LTR|ERV1 12353 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 99.2143-2 chr20 45145778 45146004 + 0.714286 NA Intergenic Intergenic -21426 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 176.429-6 chr8 112334024 112334351 + 0.714286 NA intron (NM_001363185, intron 41 of 66) intron (NM_001363185, intron 41 of 66) -309306 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 127.429-8 chr20 59744376 59744625 + 0.714286 NA intron (NM_080672, intron 2 of 12) intron (NM_080672, intron 2 of 12) 23290 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 128 chr1 160541452 160541659 + 0.714286 NA 3' UTR (NM_001184879, exon 8 of 8) 3' UTR (NM_001184879, exon 8 of 8) -18300 NM_052931 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 154.571-2 chr4 18085558 18085953 + 0.714286 NA Intergenic L1ME1|LINE|L1 -63880 NR_158564 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 179.072 chr13 108242248 108242564 + 0.714286 NA Intergenic Intergenic 24014 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 111.429-4 chr15 96394913 96395104 + 0.714286 NA Intergenic Intergenic 61243 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 143-7 chr7 112826473 112826857 + 0.714286 NA intron (NM_152556, intron 4 of 4) L1ME1|LINE|L1 -36242 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 290.714 chr5 41095003 41095634 + 0.714286 NA Intergenic Intergenic -23976 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 129.286-2 chr12 61606847 61607201 + 0.714286 NA Intergenic MSTB|LTR|ERVL-MaLR 585815 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 122.857-8 chr3 88217701 88217943 + 0.714286 NA Intergenic Intergenic 67863 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 194.143-3 chr3 191416487 191417052 + 0.714286 NA Intergenic Intergenic -8755 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 165-2 chr14 70179223 70179543 + 0.714286 NA intron (NM_033262, intron 1 of 7) L2a|LINE|L2 -7725 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 117.5-9 chrX 103159850 103160102 + 0.714286 NA Intergenic AluJr|SINE|Alu -55116 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 125-2 chr11 5428348 5428737 + 0.714286 NA intron (NM_001005567, intron 1 of 4) Tigger1a_Art|DNA|TcMar-Tigger 6431 NM_001004757 390061 Hs.528592 NM_001004757 ENSG00000167360 OR51Q1 - olfactory receptor family 51 subfamily Q member 1 (gene/pseudogene) protein-coding 215.072 chr20 42455152 42455576 + 0.714286 NA intron (NM_133170, intron 8 of 31) LTR16C|LTR|ERVL -230119 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 186.572 chr5 74949760 74950250 + 0.714286 NA Intergenic L1MC5a|LINE|L1 -83039 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 102.714-4 chr13 78892629 78892940 + 0.714286 NA Intergenic Intergenic -52734 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 132.143-3 chr12 60484329 60484630 + 0.714286 NA Intergenic MLT2A1|LTR|ERVL 795109 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 105.714-5 chr13 65050829 65051002 + 0.714286 NA Intergenic Intergenic -815132 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 122.857-13 chrX 84406590 84406900 + 0.714286 NA intron (NM_001177478, intron 4 of 9) intron (NM_001177478, intron 4 of 9) 95708 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 110.357-7 chr7 125051645 125051886 + 0.714286 NA intron (NR_125718, intron 4 of 10) Tigger3b|DNA|TcMar-Tigger -121782 NM_001042594 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 210.214 chr20 21886634 21886983 + 0.714286 NA Intergenic Intergenic -167282 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 125.357-6 chr7 79134635 79135355 + 0.714286 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 126007 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 117.5-7 chr5 103734515 103734720 + 0.714286 NA Intergenic L2a|LINE|L2 -171828 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 170.429-3 chr4 106212326 106212802 + 0.714286 NA intron (NM_001290768, intron 21 of 26) intron (NM_001290768, intron 21 of 26) -103046 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 137.214 chr11 64816400 64816790 + 0.714286 NA Intergenic AluJo|SINE|Alu -5301 NM_130804 4221 Hs.423348 NM_000244 ENSG00000133895 MEN1 MEAI|SCG2 menin 1 protein-coding 101.214-10 chr8 99435210 99435392 + 0.714286 NA intron (NM_017890, intron 22 of 61) MamRTE1|LINE|RTE-BovB 101429 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 104.714-9 chr6 158849295 158849502 + 0.714286 NA intron (NR_028496, intron 2 of 2) intron (NR_028496, intron 2 of 2) 8234 NR_028496 202459 Hs.487035 NM_145303 ENSG00000243775 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 146.857-6 chr7 12230733 12230971 + 0.714286 NA intron (NM_001134232, intron 6 of 7) intron (NM_001134232, intron 6 of 7) 19558 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 197.714 chr14 36073305 36074000 + 0.714286 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 3225 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 137.429-7 chrX 78043286 78043535 + 0.714286 NA non-coding (NR_104109, exon 8 of 10) non-coding (NR_104109, exon 8 of 10) -60838 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 105.357-7 chr8 118242790 118242947 + 0.714286 NA intron (NM_001101676, intron 4 of 4) L1ME4a|LINE|L1 -131049 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 160.286-2 chr10 77161672 77162070 + 0.714286 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 21040 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 179.714 chr3 130967206 130967579 + 0.714286 NA exon (NM_001199180, exon 15 of 28) exon (NM_001199180, exon 15 of 28) 59462 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 145.571 chr14 61502335 61502638 + 0.714286 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 67708 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 167.428 chr11 93956096 93956498 + 0.714286 NA Intergenic Intergenic -65057 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 165.214-3 chr19 2003873 2004158 + 0.714286 NA intron (NM_017797, intron 1 of 8) MER4A1_|LTR|ERV1 11699 NM_017797 55643 Hs.465543 NM_017797 ENSG00000133243 BTBD2 - BTB domain containing 2 protein-coding 106.429-3 chr14 77372444 77372673 + 0.714286 NA intron (NM_001346133, intron 1 of 5) intron (NM_001346133, intron 1 of 5) 1351 NM_001346134 283578 Hs.26403 NM_213601 ENSG00000100580 TMED8 FAM15B transmembrane p24 trafficking protein family member 8 protein-coding 109.286-3 chr2 108861074 108861257 + 0.714286 NA intron (NM_001351557, intron 11 of 12) L1PA17|LINE|L1 74394 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 97.4286-4 chr3 130973655 130973898 + 0.714286 NA intron (NM_001001485, intron 17 of 27) intron (NM_001001485, intron 17 of 27) 53078 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 151.714-2 chr2 28557546 28557923 + 0.714286 NA intron (NM_001170585, intron 17 of 56) intron (NM_001170585, intron 17 of 56) -8623 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 101.071-6 chr8 63530906 63531091 + 0.714286 NA Intergenic Intergenic 65149 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 123.429-3 chr2 114976166 114976399 + 0.714286 NA intron (NM_001321910, intron 2 of 26) HAL1b|LINE|L1 -88291 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 175.714-7 chr6 51183917 51184270 + 0.714286 NA Intergenic L1MA8|LINE|L1 365222 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 170.143 chr2 171201852 171202222 + 0.714286 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) 29256 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 109-5 chr2 179110953 179111194 + 0.714286 NA intron (NM_178123, intron 17 of 17) intron (NM_178123, intron 17 of 17) -60936 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 153.429-2 chr2 15092172 15092455 + 0.714286 NA Intergenic Intergenic 459596 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 136.071-9 chr5 40812245 40812509 + 0.714286 NA Intergenic MLT1A0|LTR|ERVL-MaLR -14182 NM_206907 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 163.786 chr17 76084448 76084773 + 0.714286 NA intron (NM_001145298, intron 15 of 18) intron (NM_001145298, intron 15 of 18) 5428 NM_180990 353174 Hs.714919 NM_180990 ENSG00000186919 ZACN L2|LGICZ|LGICZ1|ZAC|ZAC1 zinc activated ion channel protein-coding 215.214 chr22 41301509 41302074 + 0.714286 NA intron (NM_017590, intron 1 of 22) CpG 266 NM_017590 23264 Hs.592188 NM_017590 ENSG00000100403 ZC3H7B ROXAN1|RoXaN zinc finger CCCH-type containing 7B protein-coding 117.286-2 chr2 166215843 166216114 + 0.714286 NA intron (NM_001365536, intron 24 of 26) L1MA8|LINE|L1 -66817 NM_001353949 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 165.429-4 chr2 81576143 81576516 + 0.714286 NA Intergenic L2b|LINE|L2 -109383 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 122.357 chr14 35028040 35028538 + 0.714286 NA intron (NM_003136, intron 15 of 15) intron (NM_003136, intron 15 of 15) -16618 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 204.143 chr6 151204284 151204701 + 0.714286 NA intron (NR_125868, intron 1 of 2) MLT1A|LTR|ERVL-MaLR 23965 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 182.071 chr3 161814667 161815144 + 0.714286 NA Intergenic Tigger17a|DNA|TcMar-Tigger 318097 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 152.143-2 chr20 55897214 55897695 + 0.714286 NA Intergenic Tigger1|DNA|TcMar-Tigger 108065 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 116.429-4 chr2 133127063 133127309 + 0.714286 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -139009 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 119.286-5 chr18 6632653 6632952 + 0.714286 NA Intergenic L1MEc|LINE|L1 -96914 NM_001366230 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 195.571-2 chr8 122793635 122793998 + 0.714286 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 12161 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 152-6 chr4 47568307 47568617 + 0.714286 NA intron (NM_020453, intron 15 of 22) MIRb|SINE|MIR 83187 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 144.214 chr2 35487837 35488343 + 0.714286 NA Intergenic L1MDa|LINE|L1 16685 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 120.714-9 chrX 42606210 42606418 + 0.714286 NA Intergenic Intergenic 171849 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 122.714-8 chr6 17693944 17694304 + 0.714286 NA intron (NM_005124, intron 1 of 21) L2a|LINE|L2 -12006 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 196.429-2 chr7 55113898 55114522 + 0.714286 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 4371 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 237.857 chr7 46988086 46988664 + 0.714286 NA Intergenic L1MC4|LINE|L1 -291253 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 132.5-4 chr9 100133067 100133502 + 0.714286 NA intron (NR_134606, intron 3 of 16) L1ME3Cz|LINE|L1 34041 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 136.286-7 chr3 115964799 115964996 + 0.714286 NA intron (NM_001318915, intron 3 of 8) L1ME3E|LINE|L1 -59771 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 125.929-2 chr10 32580896 32581219 + 0.714286 NA intron (NM_001321115, intron 17 of 43) intron (NM_001321115, intron 17 of 43) 134917 NR_109826 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 131.428 chr7 117953005 117953348 + 0.714286 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -79735 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 141-4 chr19 38550399 38550685 + 0.714286 NA intron (NM_001042723, intron 88 of 104) AluJo|SINE|Alu -45805 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 98.2143-2 chr15 83024177 83024367 + 0.714286 NA intron (NM_025238, intron 5 of 7) L1M5|LINE|L1 -12633 NM_001160113 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 119.571-5 chr3 58680644 58680970 + 0.714286 NA Intergenic Intergenic -14033 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 115.357-2 chr12 43425887 43426100 + 0.714286 NA intron (NM_025003, intron 27 of 38) intron (NM_025003, intron 27 of 38) 126210 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 111.071-4 chr16 85050188 85050438 + 0.714286 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) -12899 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 109.714-9 chr5 80689631 80689822 + 0.714286 NA intron (NM_002439, intron 8 of 23) L1MC1|LINE|L1 -34743 NM_000791 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 188.429 chr3 186224348 186224618 + 0.714286 NA intron (NM_001346, intron 20 of 24) L3|LINE|CR1 -115394 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 127.5-8 chr7 48815124 48815578 + 0.714286 NA Intergenic Intergenic -109196 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 144.357 chr16 82075734 82076051 + 0.714286 NA intron (NM_002153, intron 3 of 4) L1MA3|LINE|L1 40639 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 141.643 chr14 67792132 67792330 + 0.714286 NA intron (NM_015346, intron 14 of 41) intron (NM_015346, intron 14 of 41) 24359 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 117-4 chr15 91174406 91174687 + 0.714286 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 72750 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 134-4 chr11 86592744 86593065 + 0.714286 NA intron (NM_001014811, intron 1 of 13) MIRb|SINE|MIR 79294 NR_147831 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 178.643 chr8 88888822 88889317 + 0.714286 NA Intergenic Intergenic -561586 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 114.143-4 chr4 164390182 164390403 + 0.714286 NA Intergenic Intergenic -7037 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 164.571-2 chr10 89332083 89332618 + 0.714286 NA promoter-TSS (NM_001031683) promoter-TSS (NM_001031683) -179 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 102-10 chr9 38147799 38148178 + 0.714286 NA Intergenic L1ME2|LINE|L1 -78761 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 135-5 chr15 63128928 63129129 + 0.714286 NA intron (NM_001288585, intron 4 of 4) AluSx1|SINE|Alu 7167 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 118.357 chr10 13114915 13115266 + 0.642857 NA intron (NM_001008213, intron 6 of 15) (AT)n|Simple_repeat|Simple_repeat 14927 NM_001008212 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 110.571-5 chr18 25428411 25428755 + 0.642857 NA Intergenic MER58D|DNA|hAT-Charlie -76417 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 158.5-2 chr18 64285638 64286083 + 0.642857 NA intron (NR_033881, intron 3 of 9) intron (NR_033881, intron 3 of 9) -25805 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 101.357-10 chr7 66304835 66305134 + 0.642857 NA intron (NM_003596, intron 3 of 5) AluJr|SINE|Alu 95424 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 198.214 chr2 181932522 181932986 + 0.642857 NA Intergenic Intergenic -21487 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 141.429-3 chr7 92336263 92336655 + 0.642857 NA intron (NM_019004, intron 5 of 19) L1MEf|LINE|L1 -90359 NM_001350679 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 178.286-7 chr9 32874656 32875071 + 0.642857 NA Intergenic Intergenic 91323 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 136.857-3 chr2 9589703 9590100 + 0.642857 NA intron (NM_006826, intron 3 of 5) intron (NM_006826, intron 3 of 5) -34071 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 149.857-5 chr4 44510911 44511207 + 0.642857 NA Intergenic Intergenic -62250 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 218.786-2 chr8 115961833 115962508 + 0.642857 NA intron (NR_046215, intron 11 of 13) intron (NR_046215, intron 11 of 13) -293195 NM_014112 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 102.857-2 chr1 175476693 175477046 + 0.642857 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 266726 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 167.571 chr8 116258351 116258642 + 0.642857 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 66563 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 104.714-4 chr2 61530353 61530754 + 0.642857 NA intron (NM_003400, intron 2 of 24) intron (NM_003400, intron 2 of 24) 7803 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 99.4286-7 chr5 27854986 27855317 + 0.642857 NA Intergenic AluJo|SINE|Alu 382859 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 101-5 chr18 3167769 3168176 + 0.642857 NA intron (NM_019856, intron 9 of 36) intron (NM_019856, intron 9 of 36) 51996 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 128.571-8 chr6 38779360 38779614 + 0.642857 NA intron (NM_001371, intron 13 of 91) intron (NM_001371, intron 13 of 91) 64176 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 105.5-3 chr2 122262511 122262681 + 0.642857 NA Intergenic Intergenic 506945 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 186.571 chr12 75576279 75576686 + 0.642857 NA Intergenic AluSc5|SINE|Alu -64873 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 115.857-7 chr5 51916587 51916860 + 0.642857 NA Intergenic L1M5|LINE|L1 -91308 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 160.786 chr10 105515219 105515655 + 0.642857 NA Intergenic Intergenic 304896 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 101.714-10 chr8 70673193 70673436 + 0.642857 NA intron (NM_001287259, intron 1 of 5) intron (NM_001287259, intron 1 of 5) 3975 NM_001287260 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 144.929-3 chr5 106436731 106436984 + 0.642857 NA Intergenic L1ME3B|LINE|L1 574157 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 184.286 chr1 76734316 76734750 + 0.642857 NA Intergenic L1MB1|LINE|L1 44734 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 104.357-9 chr4 63086542 63086797 + 0.642857 NA Intergenic Intergenic -924904 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 139.357-3 chr7 99885893 99886316 + 0.642857 NA Intergenic L1MC3|LINE|L1 -9071 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 112.857-12 chr6 108067150 108067394 + 0.642857 NA intron (NM_014028, intron 1 of 5) L2c|LINE|L2 7469 NM_014028 28962 Hs.226780 NM_014028 ENSG00000081087 OSTM1 GIPN|GL|HSPC019|OPTB5 osteoclastogenesis associated transmembrane protein 1 protein-coding 122.929-6 chr8 122631517 122631893 + 0.642857 NA Intergenic MLT1I|LTR|ERVL-MaLR 62401 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 137.143-5 chr2 41399502 41399786 + 0.642857 NA Intergenic Intergenic -477911 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 143.928 chr15 63353804 63354138 + 0.642857 NA intron (NR_135511, intron 2 of 9) intron (NR_135511, intron 2 of 9) 27875 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 118-5 chr22 26464022 26464279 + 0.642857 NA exon (NM_001349898, exon 12 of 15) exon (NM_001349898, exon 12 of 15) 15338 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 207.143 chr8 82066362 82066924 + 0.642857 NA Intergenic Intergenic -224357 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 184.071-2 chr15 70897673 70898051 + 0.642857 NA intron (NM_001363732, intron 4 of 15) intron (NM_001363732, intron 4 of 15) 5419 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 139.072-2 chr8 121251516 121252061 + 0.642857 NA Intergenic L2c|LINE|L2 -387558 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 110.286-6 chr20 14932090 14932271 + 0.642857 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -2662 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 127.143-9 chr7 109547173 109547474 + 0.642857 NA Intergenic AluJo|SINE|Alu 412890 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 131.643 chr10 4890297 4890545 + 0.642857 NA intron (NR_026743, intron 3 of 10) intron (NR_026743, intron 3 of 10) 25852 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 130.928 chr3 168285965 168286288 + 0.642857 NA intron (NR_021485, intron 1 of 15) L3b|LINE|CR1 36604 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 126.857-11 chr22 39892573 39892919 + 0.642857 NA intron (NM_152512, intron 1 of 6) intron (NM_152512, intron 1 of 6) 1014 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 121.214-5 chr7 37066119 37066420 + 0.642857 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 68473 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 114.286-2 chr11 39837557 39837824 + 0.642857 NA Intergenic Intergenic 455440 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 96.5 chr10 76041938 76042301 + 0.642857 NA intron (NM_001305581, intron 3 of 6) intron (NM_001305581, intron 3 of 6) 259358 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 101.786-3 chr10 3452882 3453070 + 0.642857 NA intron (NR_155743, intron 3 of 4) intron (NR_155743, intron 3 of 4) 49862 NR_155743 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 149.786-7 chr7 31608672 31609082 + 0.642857 NA intron (NM_194300, intron 8 of 12) L1M4|LINE|L1 55875 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 135.071-4 chr5 95783962 95784510 + 0.642857 NA intron (NM_014899, intron 10 of 11) intron (NM_014899, intron 10 of 11) 38490 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 117.786-2 chr13 84568307 84568555 + 0.642857 NA intron (NR_046871, intron 6 of 6) intron (NR_046871, intron 6 of 6) -215223 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 131.143 chr1 202321757 202322073 + 0.642857 NA Intergenic Charlie19a|DNA|hAT-Charlie 20021 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 124.5-5 chr7 45226721 45227023 + 0.642857 NA Intergenic Intergenic 69081 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 127.143-6 chr5 174955000 174955440 + 0.642857 NA intron (NR_046113, intron 2 of 2) L1MB3|LINE|L1 40511 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 134.286-2 chr14 55838013 55838524 + 0.642857 NA Intergenic Intergenic -41594 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 135.5-4 chr15 80685081 80685368 + 0.642857 NA Intergenic Intergenic -10086 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 149.786-2 chr11 103413668 103413981 + 0.642857 NA intron (NM_001377, intron 84 of 88) intron (NM_001377, intron 84 of 88) 304398 NM_001377 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 99.2857-2 chr16 81216648 81216894 + 0.642857 NA intron (NM_001076780, intron 1 of 17) AluSx3|SINE|Alu 3623 NM_001076780 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 165.286-2 chr7 122478764 122479301 + 0.642857 NA intron (NM_001167940, intron 12 of 29) intron (NM_001167940, intron 12 of 29) -174282 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 107.357-9 chr2 18125160 18125508 + 0.642857 NA Intergenic Intergenic 246667 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 137.286-3 chr22 30351285 30351633 + 0.642857 NA intron (NM_005877, intron 2 of 15) intron (NM_005877, intron 2 of 15) -5165 NM_001318335 550631 Hs.505597 NM_001017437 ENSG00000187860 CCDC157 - coiled-coil domain containing 157 protein-coding 180 chr10 31175766 31176195 + 0.642857 NA Intergenic L1MEc|LINE|L1 -11903 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 98.9285 chr20 18031655 18031810 + 0.642857 NA intron (NM_001303461, intron 3 of 3) intron (NM_001303461, intron 3 of 3) 26184 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 124.857-7 chr8 119313330 119313757 + 0.642857 NA Intergenic L1MA8|LINE|L1 -11628 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 129.643 chr1 79290335 79290628 + 0.642857 NA Intergenic MIRb|SINE|MIR -283751 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 144.214-2 chr5 64681267 64681657 + 0.642857 NA Intergenic MER97a|DNA|hAT-Tip100 -9041 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 102.714-8 chr2 134849139 134849388 + 0.642857 NA intron (NM_001307983, intron 3 of 9) intron (NM_001307983, intron 3 of 9) -8557 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 121.429 chr17 75760854 75761505 + 0.642857 NA intron (NM_000154, intron 5 of 7) AluSg|SINE|Alu 4013 NM_000154 2584 Hs.407966 NM_000154 ENSG00000108479 GALK1 GALK|GK1|HEL-S-19 galactokinase 1 protein-coding 102.286-9 chr5 39152245 39152450 + 0.642857 NA intron (NM_001243093, intron 3 of 18) intron (NM_001243093, intron 3 of 18) 67216 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 142.857-4 chr7 46403493 46403867 + 0.642857 NA Intergenic Intergenic 293442 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 125.143-8 chr3 157731910 157732145 + 0.642857 NA Intergenic Intergenic 188683 NM_001243729 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 147.143-6 chr9 27960208 27960586 + 0.642857 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -386531 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 124.5-7 chr8 99402498 99403245 + 0.642857 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 133859 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 103.929-10 chr7 8980356 8980646 + 0.642857 NA Intergenic Intergenic 546892 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 126.214-5 chr2 107752172 107752394 + 0.642857 NA Intergenic Intergenic -1829 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 141.786 chr1 193111596 193111973 + 0.642857 NA Intergenic AluJo|SINE|Alu -5670 NM_016066 51022 Hs.458283 NM_016066 ENSG00000023572 GLRX2 CGI-133|GRX2 glutaredoxin 2 protein-coding 140.143-3 chr5 156748326 156748648 + 0.642857 NA intron (NM_001128209, intron 6 of 7) L1ME3E|LINE|L1 -101808 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 134.857-8 chr5 144237722 144238071 + 0.642857 NA intron (NM_001370487, intron 2 of 2) MIRc|SINE|MIR 32505 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 112.071-7 chr6 121750800 121751101 + 0.642857 NA Intergenic L1PA11|LINE|L1 315304 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 152.786 chr10 90993999 90994414 + 0.642857 NA Intergenic Intergenic -38960 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 194.5 chr2 98113876 98114414 + 0.642857 NA intron (NR_144297, intron 2 of 18) L1MEf|LINE|L1 26978 NR_144297 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 145.786-2 chr2 133521127 133521467 + 0.642857 NA intron (NM_207481, intron 2 of 17) intron (NM_207481, intron 2 of 17) 47166 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 163.286 chr1 110088818 110089173 + 0.642857 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) 6307 NR_126382 104355139 Hs.628193 NR_126382 ENSG00000258673 LINC01397 - long intergenic non-protein coding RNA 1397 ncRNA 109.643-4 chr22 35993723 35994013 + 0.642857 NA intron (NM_001082578, intron 1 of 13) AluSx1|SINE|Alu -32238 NM_001349990 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 159.643-3 chr3 188623657 188623971 + 0.642857 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -55148 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 218.786 chr6 49396285 49396874 + 0.642857 NA Intergenic L1PB1|LINE|L1 66674 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 105.214 chr10 94879350 94879634 + 0.642857 NA Intergenic L1PBa|LINE|L1 -59166 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 134.857-4 chr2 30499912 30500400 + 0.642857 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 52910 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 141.786-4 chr7 2454317 2454661 + 0.642857 NA Intergenic L1M4|LINE|L1 21894 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 121.143-7 chr8 37959157 37959541 + 0.642857 NA Intergenic MLT1C|LTR|ERVL-MaLR 7250 NM_000025 155 Hs.2549 NM_000025 ENSG00000188778 ADRB3 BETA3AR adrenoceptor beta 3 protein-coding 145.429-4 chr7 32165416 32165768 + 0.642857 NA intron (NM_001322059, intron 3 of 17) THE1D|LTR|ERVL-MaLR -94156 NM_001322055 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 97.4999-4 chr8 83260817 83261037 + 0.642857 NA Intergenic Intergenic -142831 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 139.214-3 chr5 174907235 174907481 + 0.642857 NA Intergenic L1PA10|LINE|L1 88373 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 113.714-2 chr11 42708327 42708638 + 0.642857 NA Intergenic Intergenic -454792 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 111.357-7 chr20 14544269 14544475 + 0.642857 NA intron (NM_001351663, intron 4 of 17) MIRb|SINE|MIR -10012 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 100.071-7 chr4 113054021 113054185 + 0.642857 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) 4450 NM_001148 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 135.286-4 chr8 130872591 130872942 + 0.642857 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 168143 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 153.357-2 chr2 185788710 185789119 + 0.642857 NA exon (NM_173651, exon 16 of 23) exon (NM_173651, exon 16 of 23) 11236 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 113.857-12 chr9 96227317 96227815 + 0.642857 NA Intergenic L1ME2|LINE|L1 -18897 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 146.5 chr12 51726565 51726935 + 0.642857 NA intron (NM_001369788, intron 12 of 25) intron (NM_001369788, intron 12 of 25) 105167 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 108.357-2 chr11 11041158 11041443 + 0.642857 NA Intergenic L1MC5|LINE|L1 183083 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 108.857-9 chr8 75130849 75131050 + 0.642857 NA Intergenic THE1D-int|LTR|ERVL-MaLR 130794 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 131.357-2 chr9 36263345 36263689 + 0.642857 NA intron (NM_001128227, intron 1 of 11) L3|LINE|CR1 -5069 NM_005476 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 105.429-6 chr2 102090788 102091029 + 0.642857 NA intron (NM_001320978, intron 1 of 11) L1ME3A|LINE|L1 -13696 NM_001320986 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 109.571-7 chr9 27688117 27688394 + 0.642857 NA Intergenic MER49|LTR|ERV1 -114389 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 138.357-7 chr5 145796386 145796719 + 0.642857 NA intron (NM_205846, intron 4 of 6) intron (NM_205846, intron 4 of 6) 38790 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 156.214 chr14 69956883 69957593 + 0.642857 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -20895 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 175.214-4 chr2 129308271 129308688 + 0.642857 NA Intergenic Intergenic -34588 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 111.286-9 chr5 76093082 76093294 + 0.642857 NA intron (NM_014979, intron 1 of 12) L1ME3A|LINE|L1 9805 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 140.714-8 chr8 135059852 135060134 + 0.642857 NA Intergenic Intergenic -174138 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 125-9 chr3 69672218 69672547 + 0.642857 NA Intergenic Intergenic -67082 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 134.214 chr1 73056513 73056747 + 0.642857 NA Intergenic L1PA6|LINE|L1 -249540 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 103.714-19 chr7 10310383 10310643 + 0.642857 NA Intergenic Intergenic -392163 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 101.786-5 chr2 38896718 38897049 + 0.642857 NA Intergenic L1ME3G|LINE|L1 20921 NM_001145450 729967 Hs.729207 NM_194270 ENSG00000188010 MORN2 BLOCK27|MOPT MORN repeat containing 2 protein-coding 128.571-6 chr20 23996130 23996357 + 0.642857 NA Intergenic Intergenic -7464 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 133.429-2 chr1 229527851 229528100 + 0.642857 NA intron (NM_012089, intron 8 of 12) intron (NM_012089, intron 8 of 12) 19545 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 171.286-3 chr4 180026565 180026990 + 0.642857 NA Intergenic Intergenic 1132372 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 116.357-3 chr5 106633620 106633965 + 0.642857 NA Intergenic Intergenic 377222 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 171.214 chr10 80368379 80368991 + 0.642857 NA TTS (NM_001270042) TTS (NM_001270042) 11904 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 120.357-4 chr5 10612766 10612972 + 0.642857 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 48799 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 131.929-3 chr4 135250665 135250929 + 0.642857 NA Intergenic Intergenic -127238 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 120.643-4 chr20 43081851 43082066 + 0.642857 NA intron (NM_133170, intron 1 of 31) L1MEi|LINE|L1 107948 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 157.286-2 chr2 53215891 53216309 + 0.642857 NA Intergenic L1PA8|LINE|L1 -513485 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 129.857-7 chr5 155890604 155890953 + 0.642857 NA Intergenic Intergenic -435979 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 172-4 chr7 6472410 6473054 + 0.642857 NA intron (NM_001100603, intron 2 of 3) intron (NM_001100603, intron 2 of 3) 11420 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 103.714-11 chr21 27108702 27108877 + 0.642857 NA Intergenic Intergenic -141701 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 97.7143-2 chr14 20517820 20518079 + 0.642857 NA Intergenic LTR16A1|LTR|ERVL 7477 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 141.929 chr15 101710680 101711219 + 0.642857 NA intron (NM_152334, intron 5 of 18) intron (NM_152334, intron 5 of 18) 13524 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 143.786-4 chr5 13669367 13669663 + 0.642857 NA Intergenic L1M4a2|LINE|L1 274965 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 113.714-6 chr19 28556824 28557129 + 0.642857 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -49712 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 122.071 chr2 73339277 73339617 + 0.642857 NA Intergenic Intergenic -45899 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 164.214-2 chr21 28590686 28591027 + 0.642857 NA Intergenic Tigger4|DNA|TcMar-Tigger 51538 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 181.928 chr4 66178859 66179316 + 0.642857 NA Intergenic Intergenic -97737 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 140.571-2 chr7 87071607 87071951 + 0.642857 NA Intergenic ERVL-E-int|LTR|ERVL -12125 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 223.571 chr5 39236415 39236976 + 0.642857 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) -17132 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 98.6428-2 chr7 106387657 106387916 + 0.642857 NA Intergenic L1MA3|LINE|L1 -102803 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 144.429-4 chr5 117345309 117345738 + 0.642857 NA Intergenic Intergenic -69989 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 125.143-10 chr5 12953862 12954226 + 0.642857 NA intron (NR_147005, intron 2 of 4) L1M1|LINE|L1 78842 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 174.643-3 chr7 111570645 111571026 + 0.642857 NA Intergenic L1MA1|LINE|L1 -8318 NM_001244606 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 120.643-7 chr7 48248376 48248682 + 0.642857 NA intron (NM_152701, intron 14 of 61) intron (NM_152701, intron 14 of 61) 77071 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 105.571-4 chr22 35462034 35462306 + 0.642857 NA Intergenic L1ME4b|LINE|L1 62030 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 102.071-5 chr17 67691040 67691372 + 0.642857 NA intron (NM_181671, intron 9 of 9) intron (NM_181671, intron 9 of 9) -26627 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 158.857 chr2 233565094 233565481 + 0.642857 NA intron (NM_001365479, intron 2 of 31) intron (NM_001365479, intron 2 of 31) 286 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 125.357-7 chr8 62769159 62769466 + 0.642857 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -208549 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 154.929-3 chr4 15549719 15550199 + 0.642857 NA intron (NM_001080522, intron 18 of 37) LTR101_Mam|LTR|ERVL 80077 NM_001164720 57545 Hs.590928 NM_020785 ENSG00000048342 CC2D2A JBTS9|MKS6 coiled-coil and C2 domain containing 2A protein-coding 149.357 chr10 83382576 83382894 + 0.642857 NA Intergenic L1MC2|LINE|L1 294354 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 108.714-6 chr5 7813011 7813273 + 0.642857 NA intron (NM_020546, intron 22 of 24) intron (NM_020546, intron 22 of 24) 37991 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 167.357-4 chr7 92241334 92241784 + 0.642857 NA intron (NM_001013406, intron 3 of 16) intron (NM_001013406, intron 3 of 16) -4415 NM_019004 54467 Hs.83293 NM_019004 ENSG00000001629 ANKIB1 - ankyrin repeat and IBR domain containing 1 protein-coding 169.286-4 chr3 196468691 196469275 + 0.642857 NA 3' UTR (NM_152617, exon 6 of 6) 3' UTR (NM_152617, exon 6 of 6) 34785 NM_152617 165918 Hs.250648 NM_152617 ENSG00000163961 RNF168 hRNF168 ring finger protein 168 protein-coding 107.429-3 chr11 48662656 48663083 + 0.642857 NA Intergenic ALR/Alpha|Satellite|centr 174076 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 104.143-3 chr10 95399056 95399239 + 0.642857 NA exon (NM_024991, exon 11 of 26) exon (NM_024991, exon 11 of 26) 42033 NM_001034956 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 122.143-2 chr19 30036624 30036950 + 0.642857 NA Intergenic L1MC1|LINE|L1 94548 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 123.143-5 chr20 49153650 49153897 + 0.642857 NA intron (NM_004602, intron 4 of 13) intron (NM_004602, intron 4 of 13) 34597 NM_001322932 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 99.0714-2 chr8 75229315 75229503 + 0.642857 NA intron (NR_103849, intron 1 of 1) intron (NR_103849, intron 1 of 1) 49072 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 106.714-15 chrX 144769414 144769656 + 0.642857 NA Intergenic HAL1|LINE|L1 -477968 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 134.786-5 chr3 152889372 152889770 + 0.642857 NA Intergenic L1M2|LINE|L1 54440 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 140.071 chr6 161277713 161278193 + 0.642857 NA Intergenic Intergenic -3892 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 153.214-3 chr14 62542804 62543150 + 0.642857 NA Intergenic Intergenic -403004 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 100.857-4 chr1 238246956 238247112 + 0.642857 NA Intergenic L1M2|LINE|L1 238983 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 199.071-3 chr8 68162574 68162913 + 0.642857 NA intron (NM_024870, intron 35 of 39) LTR49-int|LTR|ERV1 -167630 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 124.857-2 chr2 108992638 108992852 + 0.642857 NA Intergenic L4_A_Mam|LINE|RTE-X -3525 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 144.643 chr16 78065093 78065361 + 0.642857 NA Intergenic Tigger4b|DNA|TcMar-Tigger -34427 NM_130791 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 126.857-6 chr16 80118156 80118491 + 0.642857 NA Intergenic Intergenic 323074 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 120.857-6 chr6 88288181 88288408 + 0.642857 NA Intergenic L2a|LINE|L2 -120945 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 128.143-5 chr6 137658063 137658538 + 0.642857 NA Intergenic L3|LINE|CR1 -7346 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 105.214-15 chr8 53508436 53508658 + 0.642857 NA Intergenic Intergenic 15418 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 114-7 chr22 23525152 23525400 + 0.642857 NA Intergenic MLT1C|LTR|ERVL-MaLR -12826 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 117.143 chr1 68792699 68793028 + 0.642857 NA Intergenic Intergenic -263035 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 194.143-2 chr1 208336385 208336712 + 0.642857 NA Intergenic Intergenic -92164 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 123.214-2 chr4 42658909 42659159 + 0.642857 NA Intergenic Intergenic -1929 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 203.143-2 chr8 138537933 138538252 + 0.642857 NA Intergenic Intergenic -40362 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 170.286-4 chrM 7606 8419 + 0.642857 NA promoter-TSS (NR_162149).2 promoter-TSS (NR_162149).2 -498 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 121.786 chr20 54106657 54106851 + 0.642857 NA Intergenic Intergenic -35989 NM_003657 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 120.571-9 chr8 142986125 142986548 + 0.642857 NA intron (NR_026913, intron 1 of 1) L1MEh|LINE|L1 -9492 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 97.9286-9 chr6 112350445 112350770 + 0.642857 NA 3' UTR (NM_001013734, exon 3 of 3) 3' UTR (NM_001013734, exon 3 of 3) 3277 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 140.357-2 chr19 46944373 46944788 + 0.642857 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) -75257 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 121.286-4 chr17 32398554 32399123 + 0.642857 NA Intergenic Charlie1a|DNA|hAT-Charlie -45672 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 118.071-7 chr3 163456728 163456931 + 0.642857 NA Intergenic Intergenic -153528 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 174.286-2 chr4 157666195 157666742 + 0.642857 NA Intergenic Intergenic 93978 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 164.857-4 chr7 95301342 95301638 + 0.642857 NA intron (NM_000446, intron 8 of 8) intron (NM_000446, intron 8 of 8) 23042 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 186.357-2 chr21 16375633 16375958 + 0.642857 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -43408 NR_136545 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 129.643-4 chr22 41261780 41262143 + 0.642857 NA intron (NM_001317930, intron 5 of 15) MIRb|SINE|MIR -8911 NR_106949 102466758 NR_106949 ENSG00000274552 MIR6889 hsa-mir-6889 microRNA 6889 ncRNA 167.786 chr1 12514559 12514923 + 0.642857 NA Intergenic L1ME3F|LINE|L1 7495 NR_003022 677882 Hs.658450 NR_003022 ENSG00000266079 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 101.071-2 chr2 24960098 24960286 + 0.642857 NA intron (NM_016544, intron 3 of 6) Tigger1|DNA|TcMar-Tigger 11763 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 114.357-3 chr2 49770275 49770600 + 0.642857 NA Intergenic Intergenic 203766 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 138.714-3 chr2 21743107 21743593 + 0.642857 NA Intergenic L1P4|LINE|L1 -32698 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 105.643-4 chr12 54584138 54584384 + 0.642857 NA exon (NM_006741, exon 2 of 7) exon (NM_006741, exon 2 of 7) 4398 NM_006741 5502 Hs.505662 NM_006741 ENSG00000135447 PPP1R1A I1|IPP1 protein phosphatase 1 regulatory inhibitor subunit 1A protein-coding 137.286-2 chr21 31278351 31278784 + 0.642857 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 65787 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 171.786 chr12 126514298 126514587 + 0.642857 NA Intergenic MIRb|SINE|MIR -65115 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 99.8571-8 chr6 160402157 160402449 + 0.642857 NA intron (NM_021977, intron 2 of 10) L1MC1|LINE|L1 53925 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 133 chr1 59819761 59820073 + 0.642857 NA intron (NM_015888, intron 1 of 21) intron (NM_015888, intron 1 of 21) 4968 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 154.714 chr10 55657566 55657844 + 0.642857 NA Intergenic L1M8|LINE|L1 -29763 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 125.429-4 chr3 80641523 80641816 + 0.642857 NA Intergenic Intergenic -123228 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 124.5-2 chr2 49550898 49551216 + 0.642857 NA Intergenic L1M5|LINE|L1 -396530 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 100.714-11 chr3 47180964 47181254 + 0.642857 NA intron (NR_033373, intron 2 of 6) AluJb|SINE|Alu 16739 NR_033373 285352 Hs.570631 NR_033373 KIF9-AS1 - KIF9 antisense RNA 1 ncRNA 112-4 chr14 28799611 28799876 + 0.642857 NA Intergenic Intergenic -13956 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 99.3571-4 chr5 166055276 166055520 + 0.642857 NA Intergenic Intergenic 870972 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 125.071-4 chr12 46359270 46359631 + 0.642857 NA 3' UTR (NM_018976, exon 16 of 16) 3' UTR (NM_018976, exon 16 of 16) 13323 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 192.428 chr4 47073055 47073430 + 0.642857 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 41675 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 109.286-5 chr3 146898818 146899019 + 0.642857 NA Intergenic Intergenic -23005 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 117-9 chr5 164878278 164878725 + 0.642857 NA Intergenic Intergenic 408222 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 143.5-4 chr22 35359234 35359534 + 0.642857 NA Intergenic Intergenic -21712 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 100.286-13 chr8 100395335 100395502 + 0.642857 NA Intergenic Intergenic 12655 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 152.714-2 chr2 179738439 179738844 + 0.642857 NA intron (NM_001352815, intron 1 of 8) MER5B|DNA|hAT-Charlie 7025 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 143.5-2 chr15 72232367 72232685 + 0.642857 NA promoter-TSS (NM_001206798) promoter-TSS (NM_001206798) -902 NM_001206798 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 106.286-6 chr6 46792661 46793004 + 0.642857 NA promoter-TSS (NM_005588) promoter-TSS (NM_005588) -557 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 134-3 chr1 230912030 230912417 + 0.642857 NA intron (NM_024525, intron 19 of 22) intron (NM_024525, intron 19 of 22) 37377 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 116.143-10 chr4 76557356 76557672 + 0.642857 NA intron (NM_020859, intron 2 of 10) L1MA9|LINE|L1 -16054 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 127.5-2 chr12 3241265 3241480 + 0.642857 NA intron (NM_001168320, intron 2 of 7) (TTATATA)n|Simple_repeat|Simple_repeat 124750 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 153.214-4 chr4 93585796 93586139 + 0.642857 NA intron (NM_001286838, intron 12 of 14) L2|LINE|L2 -242786 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 119.786-6 chr6 77903082 77903421 + 0.642857 NA intron (NM_001282136, intron 4 of 4) MER47A|DNA|TcMar-Tigger 250212 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 126.643-3 chr2 14692136 14692443 + 0.642857 NA Intergenic Intergenic 59572 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 142.714-6 chr5 72967821 72968346 + 0.642857 NA intron (NM_001146032, intron 1 of 24) AluY|SINE|Alu 12042 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 142.714-3 chr12 14657849 14658099 + 0.642857 NA intron (NM_004963, intron 11 of 26) L1ME3Cz|LINE|L1 38625 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 108.357-6 chr20 24222069 24222328 + 0.642857 NA intron (NR_040102, intron 3 of 3) MER57-int|LTR|ERV1 22431 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 127.857-5 chr4 59021838 59022037 + 0.642857 NA intron (NR_133942, intron 1 of 1) intron (NR_133942, intron 1 of 1) 8364 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 177.714-2 chr9 78252402 78252763 + 0.642857 NA intron (NM_001349840, intron 9 of 15) intron (NM_001349840, intron 9 of 15) 16507 NM_001330693 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 153.286-2 chr20 16986960 16987427 + 0.642857 NA Intergenic Intergenic 238840 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 136.071-8 chr4 36417582 36417836 + 0.642857 NA Intergenic Intergenic 8719 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 109.643 chr13 55751655 55751977 + 0.642857 NA Intergenic Intergenic 577362 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 152-5 chr2 221381997 221382444 + 0.642857 NA Intergenic MER58A|DNA|hAT-Charlie 190084 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 117.5-6 chr4 179516998 179517311 + 0.642857 NA Intergenic Intergenic -1609218 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 122.786-9 chr5 92591992 92592504 + 0.642857 NA Intergenic Intergenic 979095 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 99-2 chr14 49419735 49419902 + 0.642857 NA Intergenic L1ME4b|LINE|L1 166562 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 124.357-9 chr8 98967076 98967628 + 0.642857 NA Intergenic Intergenic 22910 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 205.5 chr21 29197072 29197674 + 0.642857 NA intron (NR_027072, intron 1 of 1) LTR1B|LTR|ERV1 3879 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 130.072 chr6 145190498 145190783 + 0.642857 NA Intergenic MER31-int|LTR|ERV1 496237 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 123.429-6 chr7 32547496 32547851 + 0.642857 NA intron (NM_015060, intron 3 of 15) (CAATAGA)n|Simple_repeat|Simple_repeat 52184 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 112.429-11 chr8 122812712 122812886 + 0.642857 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 31144 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 152.214 chr6 116571199 116571560 + 0.642857 NA promoter-TSS (NM_016104) promoter-TSS (NM_016104) -125 NM_015952 51389 Hs.532164 NM_015952 ENSG00000111832 RWDD1 CGI-24|PTD013 RWD domain containing 1 protein-coding 98.1429-4 chr2 126468726 126469011 + 0.642857 NA Intergenic Intergenic -187067 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 129.571-4 chr19 15632278 15632763 + 0.642857 NA Intergenic L1MB5|LINE|L1 -8377 NM_001199208 4051 Hs.106242 NM_000896 ENSG00000186529 CYP4F3 CPF3|CYP4F|CYPIVF3|LTB4H cytochrome P450 family 4 subfamily F member 3 protein-coding 177.214 chr10 49508636 49509184 + 0.642857 NA intron (NM_001346440, intron 5 of 20) intron (NM_001346440, intron 5 of 20) 15371 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 104.143 chr1 108772818 108773069 + 0.642857 NA intron (NM_007269, intron 7 of 18) intron (NM_007269, intron 7 of 18) 26269 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 136.5-5 chr3 96744766 96745068 + 0.642857 NA Intergenic Intergenic -69677 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 122.786-7 chr4 32269498 32269811 + 0.642857 NA Intergenic Intergenic -81384 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 120.071-3 chr6 52932908 52933212 + 0.642857 NA Intergenic Intergenic -23362 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 124-6 chr14 83794944 83795243 + 0.642857 NA Intergenic Intergenic 1152461 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 99.8571-3 chr10 82509980 82510218 + 0.642857 NA intron (NR_163253, intron 3 of 10) L2c|LINE|L2 -277179 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 141.143-4 chr6 138835751 138836151 + 0.642857 NA intron (NM_001077706, intron 4 of 21) L1MC4|LINE|L1 39840 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 152.357-2 chr2 196034420 196034983 + 0.642857 NA intron (NM_018897, intron 5 of 64) L1ME1|LINE|L1 34136 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 105.214-5 chr14 41122124 41122354 + 0.642857 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 167528 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 126.643-2 chr14 71292754 71292968 + 0.642857 NA Intergenic Intergenic -27615 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 130.143-5 chr3 41886224 41886482 + 0.642857 NA intron (NR_136342, intron 15 of 34) L2a|LINE|L2 75750 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 134.143 chr1 225824869 225825095 + 0.642857 NA promoter-TSS (NM_000120) promoter-TSS (NM_000120) -372 NM_000120 2052 Hs.89649 NM_000120 ENSG00000143819 EPHX1 EPHX|EPOX|HYL1|MEH epoxide hydrolase 1 protein-coding 158.571 chr10 71810188 71810527 + 0.642857 NA intron (NM_001171934, intron 14 of 21) intron (NM_001171934, intron 14 of 21) -1526 NM_001171936 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 192-2 chr4 38789236 38789618 + 0.642857 NA Intergenic Intergenic -6437 NM_001017388 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 167.143-3 chr3 125419089 125419442 + 0.642857 NA Intergenic MER57B1|LTR|ERV1 -43911 NM_001348431 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 118.071-6 chr3 71207715 71208007 + 0.642857 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) 37216 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 101.714-7 chr6 153387931 153388191 + 0.642857 NA Intergenic L1MEf|LINE|L1 -256779 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 102.214-4 chr14 21460864 21461065 + 0.642857 NA non-coding (NR_028074, exon 8 of 8) non-coding (NR_028074, exon 8 of 8) -4841 NM_001170629 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 133.857-3 chr2 82789479 82789716 + 0.642857 NA Intergenic Intergenic -67206 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 97.2143-2 chr4 38743965 38744214 + 0.642857 NA Intergenic HAL1|LINE|L1 38901 NM_001195107 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 109.5-8 chr8 83846593 83847109 + 0.642857 NA Intergenic Intergenic -335936 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 146-2 chr20 47754575 47754957 + 0.642857 NA intron (NM_198596, intron 2 of 20) intron (NM_198596, intron 2 of 20) 31298 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 110.857-11 chr6 136693145 136693468 + 0.642857 NA intron (NM_005923, intron 7 of 29) L1ME3Cz|LINE|L1 64192 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 110.643-3 chrX 80387423 80387681 + 0.642857 NA intron (NM_001170574, intron 3 of 4) L1M1|LINE|L1 -32895 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 120.143-11 chr5 167413321 167413538 + 0.642857 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -160230 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 156.643-2 chr14 63035444 63035712 + 0.642857 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 9880 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 108.929-4 chr3 152161109 152161358 + 0.642857 NA intron (NR_136178, intron 2 of 2) intron (NR_136178, intron 2 of 2) 44196 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 112.929 chr10 78957867 78958110 + 0.642857 NA intron (NR_024429, intron 6 of 7) intron (NR_024429, intron 6 of 7) 109460 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 127.071-4 chr6 44168946 44169227 + 0.642857 NA intron (NM_007058, intron 2 of 22) AluJr|SINE|Alu 10266 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 123.5-5 chr8 122689348 122689724 + 0.642857 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 4570 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 115.357-6 chr3 75972559 75973006 + 0.642857 NA Intergenic MER5A|DNA|hAT-Charlie -187233 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 123-10 chr22 44211122 44211395 + 0.642857 NA Intergenic Intergenic 30333 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 114.643-2 chr15 96058801 96059133 + 0.642857 NA Intergenic AluJb|SINE|Alu 68874 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 102.214-5 chr14 77520122 77520460 + 0.642857 NA intron (NM_004863, intron 10 of 11) intron (NM_004863, intron 10 of 11) -21475 NM_199296 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 192.857-2 chr5 164753893 164754287 + 0.642857 NA Intergenic MIR|SINE|MIR 283811 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 121-6 chr2 10650160 10650485 + 0.642857 NA intron (NR_048552, intron 11 of 19) AluJr4|SINE|Alu 39653 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 182.929 chr9 113130815 113131259 + 0.642857 NA Intergenic Intergenic 18141 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 107.857-2 chr4 36150702 36150999 + 0.642857 NA intron (NR_146894, intron 16 of 32) intron (NR_146894, intron 16 of 32) 93089 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 99.6428 chr12 28467705 28467972 + 0.642857 NA intron (NM_001352082, intron 12 of 13) L1MA2|LINE|L1 -277100 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 127.714-7 chr19 44793174 44793544 + 0.642857 NA intron (NM_012116, intron 7 of 10) intron (NM_012116, intron 7 of 10) 15469 NM_012116 23624 Hs.466907 NM_012116 ENSG00000142273 CBLC CBL-3|CBL-SL|RNF57 Cbl proto-oncogene C protein-coding 120.643 chr1 218288744 218288953 + 0.642857 NA intron (NM_016052, intron 1 of 4) intron (NM_016052, intron 1 of 4) 3555 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 116.857-8 chr8 92617196 92617490 + 0.642857 NA intron (NR_125827, intron 3 of 4) L2b|LINE|L2 38151 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 162.714 chr1 32237900 32238207 + 0.642857 NA intron (NR_026850, intron 3 of 6) AluSx1|SINE|Alu 3657 NR_026850 339483 Hs.471067 NR_026850 MTMR9LP MTMR9L myotubularin related protein 9 like, pseudogene pseudo 99.6428-2 chr14 51448023 51448280 + 0.642857 NA Intergenic L1MEd|LINE|L1 -40977 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 143.571-4 chr7 122879448 122879817 + 0.642857 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 6828 NM_001363392 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 111-2 chr2 31063975 31064198 + 0.642857 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 65554 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 134.214-2 chr11 117637780 117638028 + 0.642857 NA intron (NM_020693, intron 3 of 32) L3|LINE|CR1 159312 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 119.429 chr14 33679433 33679662 + 0.642857 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -29390 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 132.357 chr17 72080434 72080664 + 0.642857 NA non-coding (NR_103737, exon 4 of 4) non-coding (NR_103737, exon 4 of 4) 8216 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 153.857-3 chr14 90920132 90920649 + 0.642857 NA intron (NM_001322236, intron 5 of 15) intron (NM_001322236, intron 5 of 15) -103960 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 130.071-5 chr22 33187966 33188259 + 0.642857 NA Intergenic L1MA8|LINE|L1 79583 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 106.5-6 chr2 8162460 8162625 + 0.642857 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 165877 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 109.786 chr10 60306414 60306777 + 0.642857 NA intron (NM_001204403, intron 2 of 43) L1PB2|LINE|L1 83280 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 129.643-7 chr7 144064326 144064726 + 0.642857 NA Intergenic Intergenic -9694 NM_001004488 392138 Hs.553787 NM_001004488 ENSG00000221933 OR2A25 OR2A24P|OR2A25P|OR2A27 olfactory receptor family 2 subfamily A member 25 protein-coding 173.857-4 chr5 61837272 61837756 + 0.642857 NA Intergenic MER33|DNA|hAT-Charlie -101816 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 136.857-5 chr7 46551107 46551389 + 0.642857 NA Intergenic L1MA9|LINE|L1 145874 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 103.071-11 chr8 134267178 134267397 + 0.642857 NA Intergenic Intergenic -330784 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 108.071 chr11 39248439 39248735 + 0.642857 NA Intergenic Intergenic 599729 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 149.643 chr17 74537570 74538076 + 0.642857 NA Intergenic FLAM_A|SINE|Alu -6348 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 123.071 chr14 54647837 54648195 + 0.642857 NA intron (NM_015589, intron 1 of 11) MER3|DNA|hAT-Charlie 80404 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 122.786-10 chr8 80772049 80772516 + 0.642857 NA intron (NM_001033723, intron 2 of 8) L1MD1|LINE|L1 102186 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 147.929-3 chr7 126636191 126636551 + 0.642857 NA intron (NM_001371085, intron 7 of 10) MER2|DNA|TcMar-Tigger 421813 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 150.071-3 chr9 10664737 10665032 + 0.642857 NA Intergenic Intergenic 51678 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 140.571-3 chr7 93847767 93848061 + 0.642857 NA Intergenic Intergenic 42839 NM_001271004 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 100.071-10 chr8 133413235 133413396 + 0.642857 NA Intergenic L2c|LINE|L2 -116011 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 118.714 chr1 31746606 31746834 + 0.642857 NA intron (NM_001294335, intron 4 of 32) intron (NM_001294335, intron 4 of 32) 12015 NR_036216 100423028 NR_036216 ENSG00000266580 MIR4254 - microRNA 4254 ncRNA 104.857-6 chr5 175088985 175089289 + 0.642857 NA Intergenic Intergenic -93406 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 179.429-2 chr15 60215589 60215974 + 0.642857 NA Intergenic Intergenic 182205 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 118.571 chr11 112444761 112445043 + 0.642857 NA Intergenic L1MEc|LINE|L1 -37330 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 157.643 chr12 17408851 17409184 + 0.642857 NA Intergenic L1MA8|LINE|L1 180061 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 120.429-2 chr1 54052455 54052663 + 0.642857 NA intron (NM_001305051, intron 1 of 7) intron (NM_001305051, intron 1 of 7) 645 NM_004872 9528 Hs.118947 NM_004872 ENSG00000116209 TMEM59 C1orf8|DCF1|HSPC001|PRO195|UNQ169 transmembrane protein 59 protein-coding 131.5-3 chr4 17288061 17288408 + 0.642857 NA Intergenic Intergenic 32648 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 104.786-13 chrX 75201957 75202152 + 0.642857 NA intron (NM_001363821, intron 3 of 9) L1MCa|LINE|L1 45685 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 165.928 chr16 75120965 75121423 + 0.642857 NA Intergenic AluYe5|SINE|Alu -4422 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 122.357-7 chr9 75509423 75509648 + 0.642857 NA Intergenic Intergenic -381109 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 108.643 chr12 29100418 29100621 + 0.642857 NA Intergenic MIRb|SINE|MIR -48759 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 208.286-3 chr5 6332609 6333303 + 0.642857 NA intron (NR_028351, intron 1 of 1) MER20|DNA|hAT-Charlie 4336 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 181.786 chr18 9934457 9934810 + 0.642857 NA intron (NM_194434, intron 2 of 5) intron (NM_194434, intron 2 of 5) 20617 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 147.786-3 chr6 151218971 151219447 + 0.642857 NA intron (NR_125868, intron 1 of 2) MER34A|LTR|ERV1 9248 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 117.214 chr10 103744962 103745181 + 0.642857 NA intron (NM_014631, intron 3 of 13) MLT1K|LTR|ERVL-MaLR -1708 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 165.714-2 chr8 114748744 114749110 + 0.642857 NA Intergenic Intergenic 919086 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 123.429-2 chr12 126803401 126803667 + 0.642857 NA Intergenic Intergenic -31272 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 123-14 chr4 129298895 129299093 + 0.642857 NA Intergenic Intergenic 202842 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 136.286-11 chr8 120040575 120040852 + 0.642857 NA intron (NM_022783, intron 8 of 8) L3|LINE|CR1 -84389 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 124.714-5 chr5 33736724 33737277 + 0.642857 NA intron (NM_001324512, intron 3 of 21) intron (NM_001324512, intron 3 of 21) 154990 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 111.857-12 chr3 192959218 192959592 + 0.642857 NA Intergenic Intergenic -41549 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 178.429-2 chr12 12756146 12756472 + 0.642857 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -8340 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 112.929-3 chr17 58516000 58516220 + 0.642857 NA intron (NM_004687, intron 2 of 18) intron (NM_004687, intron 2 of 18) 1770 NM_004687 9110 Hs.514373 NM_004687 ENSG00000108389 MTMR4 FYVE-DSP2|ZFYVE11 myotubularin related protein 4 protein-coding 157.643-2 chr4 59453478 59453903 + 0.642857 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 440117 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 164.786 chr22 26748037 26748417 + 0.642857 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 75384 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 105-14 chr5 129195112 129195339 + 0.642857 NA Intergenic Intergenic 97537 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 108.143 chr10 63917039 63917362 + 0.642857 NA Intergenic Intergenic -395310 NM_001318154 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 127.929-2 chr14 74823374 74823632 + 0.642857 NA intron (NM_019589, intron 17 of 20) intron (NM_019589, intron 17 of 20) 40331 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 166 chr3 31996273 31996722 + 0.642857 NA Intergenic Intergenic -14647 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 123.286-2 chr1 216267121 216267382 + 0.642857 NA intron (NM_206933, intron 11 of 71) L2-3_Crp|LINE|L2 156145 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 144-7 chr5 43618654 43618923 + 0.642857 NA intron (NM_012343, intron 4 of 21) MIR|SINE|MIR -15558 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 121.143-4 chr4 30543858 30544161 + 0.642857 NA Intergenic Intergenic -176360 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 158.643-3 chr21 20380395 20380677 + 0.642857 NA Intergenic L1MC1|LINE|L1 -121851 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 116.786-3 chr13 49689322 49689647 + 0.642857 NA intron (NR_103802, intron 1 of 4) AluSg|SINE|Alu 2002 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 118.714-7 chr2 42476403 42476784 + 0.642857 NA intron (NM_172344, intron 1 of 1) AluSz6|SINE|Alu 17389 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 105.786-2 chr11 70253873 70254105 + 0.642857 NA Intergenic Intergenic -16701 NM_003626 8500 Hs.530749 NM_003626 ENSG00000131626 PPFIA1 LIP.1|LIP1|LIPRIN PTPRF interacting protein alpha 1 protein-coding 105.429-11 chr5 167206078 167206394 + 0.642857 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -37835 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 103.929-9 chr21 25027552 25027738 + 0.642857 NA intron (NR_046198, intron 2 of 3) ERVL-B4-int|LTR|ERVL 187095 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 132.357-2 chr19 39855119 39855569 + 0.642857 NA Intergenic L2-3_Crp|LINE|L2 -8965 NM_001436 2091 Hs.299002 NM_001436 ENSG00000105202 FBL FIB|FLRN|Nop1|RNU3IP1 fibrillarin protein-coding 133.071 chr14 59090378 59090728 + 0.642857 NA Intergenic AluJr|SINE|Alu -98114 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 216.929 chr20 2117446 2117896 + 0.642857 NA intron (NM_080836, intron 3 of 3) AluSx1|SINE|Alu 15844 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 121-7 chr2 178289990 178290354 + 0.642857 NA intron (NM_001201480, intron 2 of 25) L1MC5a|LINE|L1 -30070 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 103.214-6 chr15 68265366 68265678 + 0.642857 NA Intergenic L1ME3|LINE|L1 -12223 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 129.214 chr1 36421923 36422217 + 0.642857 NA intron (NM_001330493, intron 8 of 10) intron (NM_001330493, intron 8 of 10) -3492 NR_145725 109616970 NR_145725 ENSG00000201448 SNORA63C - small nucleolar RNA, H/ACA box 63C snoRNA 112.786-5 chr18 6850859 6851189 + 0.642857 NA intron (NM_001010000, intron 2 of 16) intron (NM_001010000, intron 2 of 16) 16539 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 107.929-2 chr15 41745388 41745607 + 0.642857 NA intron (NM_001164273, intron 15 of 23) MER113|DNA|hAT-Charlie -28987 NM_001265611 23005 Hs.513661 NM_014994 ENSG00000137802 MAPKBP1 JNKBP-1|JNKBP1|NPHP20 mitogen-activated protein kinase binding protein 1 protein-coding 112.929-2 chr12 116190381 116190736 + 0.642857 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -41904 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 114.214-6 chr21 28822591 28822792 + 0.642857 NA Intergenic Intergenic 62676 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 105-17 chr7 77626876 77627229 + 0.642857 NA exon (NM_002835, exon 13 of 18) exon (NM_002835, exon 13 of 18) 69213 NR_134254 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 121.857-2 chr5 22758524 22758839 + 0.642857 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 94663 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 152.572-3 chr7 8625241 8625568 + 0.642857 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 191795 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 98.0714 chr10 124007976 124008161 + 0.642857 NA 3' UTR (NM_001270764, exon 8 of 8) 3' UTR (NM_001270764, exon 8 of 8) 84338 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 163.357-3 chr3 123275038 123275512 + 0.642857 NA Intergenic L4_B_Mam|LINE|RTE-X 73332 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 168.571-2 chr6 102957470 102958065 + 0.642857 NA Intergenic L2a|LINE|L2 1558782 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 122.357-4 chr4 128283013 128283343 + 0.642857 NA intron (NM_006320, intron 1 of 2) intron (NM_006320, intron 1 of 2) 4635 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 110.643-2 chr5 166042113 166042425 + 0.642857 NA Intergenic Intergenic 884101 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 109.714-6 chr2 18430235 18430454 + 0.642857 NA Intergenic Intergenic 130309 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 153.5-2 chr11 100957195 100957681 + 0.642857 NA intron (NM_001367945, intron 14 of 25) MIRb|SINE|MIR 23164 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 127.857 chr10 20845193 20845623 + 0.642857 NA intron (NM_006393, intron 11 of 27) intron (NM_006393, intron 11 of 27) 52194 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 113.143-10 chr5 104386663 104387050 + 0.642857 NA Intergenic Intergenic -712618 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 145.286-3 chr11 9799903 9800384 + 0.642857 NA intron (NM_030962, intron 32 of 39) AluSz|SINE|Alu -38999 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 149.929-2 chr3 107986563 107986956 + 0.642857 NA Intergenic Intergenic 103554 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 98.2143-3 chr17 64386451 64386655 + 0.642857 NA intron (NM_000442, intron 2 of 15) intron (NM_000442, intron 2 of 15) 4307 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 151.214-2 chr22 43353420 43353739 + 0.642857 NA Intergenic L1MB4|LINE|L1 -10207 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 161.429-3 chr4 20472226 20472619 + 0.642857 NA intron (NM_001289135, intron 5 of 35) intron (NM_001289135, intron 5 of 35) -55853 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 159.357 chr11 100713459 100713812 + 0.642857 NA intron (NM_001367945, intron 1 of 25) intron (NM_001367945, intron 1 of 25) -25680 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 123.286-10 chr8 93358455 93358783 + 0.642857 NA intron (NR_033858, intron 10 of 10) intron (NR_033858, intron 10 of 10) -191769 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 136.071-2 chr10 94496324 94496604 + 0.642857 NA intron (NM_015188, intron 4 of 12) intron (NM_015188, intron 4 of 12) -49303 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 137.286-5 chr8 123011084 123011385 + 0.642857 NA Intergenic Intergenic 14538 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 147.286 chr1 150042731 150043034 + 0.642857 NA Intergenic Intergenic -24500 NM_001279353 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 106.286-8 chr9 33053192 33053413 + 0.642857 NA intron (NM_018225, intron 9 of 11) intron (NM_018225, intron 9 of 11) 23372 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 208.286-4 chr9 130445666 130446227 + 0.642857 NA intron (NM_054012, intron 1 of 14) intron (NM_054012, intron 1 of 14) 985 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 122.143-6 chr6 126582843 126583093 + 0.642857 NA Intergenic L2b|LINE|L2 98337 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 125.786 chr2 21087917 21088278 + 0.642857 NA Intergenic Intergenic -35889 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 144-2 chr10 58768259 58768668 + 0.642857 NA intron (NM_001080512, intron 3 of 20) L1M3c|LINE|L1 53448 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 114-9 chr8 121306256 121306536 + 0.642857 NA Intergenic Intergenic -332950 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 113.929-2 chr14 44089583 44090002 + 0.642857 NA Intergenic L1PA16|LINE|L1 417491 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 172.928 chr7 45905322 45905820 + 0.642857 NA Intergenic L1MB8|LINE|L1 15701 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 141.214 chr8 117372633 117373047 + 0.642857 NA Intergenic Intergenic -147873 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 139.857-4 chr4 13826355 13827022 + 0.642857 NA intron (NR_121681, intron 2 of 3) L2a|LINE|L2 171509 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 99.4286-4 chr11 27827700 27827945 + 0.642857 NA Intergenic L2a|LINE|L2 -105792 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 175.357 chr1 26028224 26028513 + 0.642857 NA intron (NM_004455, intron 1 of 10) intron (NM_004455, intron 1 of 10) 6593 NM_004455 2134 Hs.150956 NM_004455 ENSG00000158008 EXTL1 EXTL exostosin like glycosyltransferase 1 protein-coding 166.286-6 chr6 66534295 66534704 + 0.642857 NA Intergenic Intergenic 746620 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 115.929-3 chr11 131598242 131598674 + 0.642857 NA intron (NM_001352003, intron 1 of 8) intron (NM_001352003, intron 1 of 8) -57591 NR_110140 101929653 Hs.559159 NR_110140 ENSG00000237654 LOC101929653 - uncharacterized LOC101929653 ncRNA 171.214-2 chr12 15914884 15915266 + 0.642857 NA intron (NM_015954, intron 1 of 8) L2c|LINE|L2 3743 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 151.357-4 chr7 43039854 43040343 + 0.642857 NA Intergenic Intergenic -72549 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 106.071-7 chr2 70037513 70037782 + 0.642857 NA intron (NR_033872, intron 6 of 10) L1ME3G|LINE|L1 49368 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 174.786 chr8 114040449 114040816 + 0.642857 NA Intergenic L1MA4A|LINE|L1 -603693 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 104.571-8 chr17 30062199 30062399 + 0.642857 NA intron (NM_198529, intron 14 of 22) L1MA5|LINE|L1 -54508 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 136.357-3 chr12 74170631 74170909 + 0.642857 NA intron (NR_038300, intron 4 of 6) intron (NR_038300, intron 4 of 6) 121861 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 98.3571-4 chr14 62097160 62097356 + 0.642857 NA intron (NM_001367661, intron 8 of 8) intron (NM_001367661, intron 8 of 8) -20099 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 110.286 chr10 15831466 15831761 + 0.642857 NA intron (NM_024948, intron 8 of 14) intron (NM_024948, intron 8 of 14) 28894 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 142.714 chr10 114412033 114412316 + 0.642857 NA Intergenic Intergenic -7396 NM_032550 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 111.714-10 chr8 127872926 127873166 + 0.642857 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 75677 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 107.357-4 chr12 66357822 66358048 + 0.642857 NA intron (NM_001366722, intron 23 of 24) AluSz6|SINE|Alu 55390 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 148.714-3 chr5 126039325 126039622 + 0.642857 NA Intergenic Intergenic -140104 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 177.214-2 chr4 13600515 13600914 + 0.642857 NA exon (NM_148894, exon 10 of 26) exon (NM_148894, exon 10 of 26) 27011 NM_148894 259282 Hs.744935 NM_148894 ENSG00000038219 BOD1L1 BOD1L|FAM44A biorientation of chromosomes in cell division 1 like 1 protein-coding 133.429-3 chr2 200944854 200945095 + 0.642857 NA intron (NR_033915, intron 5 of 16) MER58A|DNA|hAT-Charlie 18686 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 142.286-2 chr17 59735627 59735886 + 0.642857 NA intron (NM_001329400, intron 3 of 9) intron (NM_001329400, intron 3 of 9) 28102 NM_001329395 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 130.428-2 chr6 34976242 34976575 + 0.642857 NA intron (NM_015245, intron 3 of 23) intron (NM_015245, intron 3 of 23) 87153 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 160.5-4 chr5 113054031 113054495 + 0.642857 NA intron (NM_001085377, intron 14 of 18) intron (NM_001085377, intron 14 of 18) 77465 NR_038352 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 164.643-2 chr5 131717435 131717801 + 0.642857 NA intron (NM_133372, intron 5 of 17) intron (NM_133372, intron 5 of 17) 79399 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 117.286 chr14 33712756 33713055 + 0.642857 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 3968 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 125.071-6 chr5 11470308 11470556 + 0.642857 NA intron (NM_001288715, intron 2 of 20) AluSp|SINE|Alu 118485 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 114.857-2 chr6 13550862 13551073 + 0.642857 NA Intergenic HAL1|LINE|L1 -23562 NM_001193267 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 219.5 chr8 144807466 144808001 + 0.642857 NA exon (NM_213605, exon 5 of 5) exon (NM_213605, exon 5 of 5) 8857 NR_134285 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 120.643-5 chr22 48734935 48735191 + 0.642857 NA intron (NM_001082967, intron 3 of 3) MIR|SINE|MIR -45232 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 122.071-4 chr9 75361549 75361904 + 0.642857 NA Intergenic Intergenic 273212 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 127-4 chr8 79898022 79898457 + 0.642857 NA Intergenic Intergenic -26502 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 102.143-5 chr14 73720999 73721268 + 0.642857 NA intron (NM_001367710, intron 11 of 12) MIR|SINE|MIR -6749 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 196.071-2 chr8 112554605 112555171 + 0.642857 NA intron (NM_001363185, intron 23 of 66) intron (NM_001363185, intron 23 of 66) -88605 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 156.286-3 chr12 6852107 6852374 + 0.642857 NA promoter-TSS (NM_031299) promoter-TSS (NM_031299) 90 NM_003481 8078 Hs.631661 NM_003481 ENSG00000111667 USP5 ISOT ubiquitin specific peptidase 5 protein-coding 102.071-7 chr2 166639308 166639546 + 0.642857 NA Intergenic MER5B|DNA|hAT-Charlie -152456 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 113-6 chr5 61843682 61843899 + 0.642857 NA Intergenic L1MC1|LINE|L1 -108092 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 107.357-11 chr3 180785505 180785791 + 0.642857 NA intron (NR_109986, intron 3 of 13) intron (NR_109986, intron 3 of 13) 84530 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 133-3 chr2 236932061 236932445 + 0.642857 NA Intergenic Intergenic 123914 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 165.214-4 chr8 88349892 88350388 + 0.642857 NA Intergenic L1PA11|LINE|L1 -22657 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 158.357-4 chr4 65966528 65966940 + 0.642857 NA Intergenic OldhAT1|DNA|hAT-Ac -296239 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 96.8571 chr1 197841738 197841922 + 0.642857 NA Intergenic Intergenic -60800 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 97.7857 chr1 200574102 200574345 + 0.642857 NA intron (NM_014875, intron 22 of 29) L2c|LINE|L2 44615 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 100.214-4 chr2 50155177 50155571 + 0.642857 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -181171 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 142.643-2 chr20 31947042 31947263 + 0.642857 NA intron (NM_030815, intron 3 of 4) intron (NM_030815, intron 3 of 4) 4894 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 158.5-5 chr8 26155627 26156165 + 0.642857 NA Intergenic LTR16|LTR|ERVL -110483 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 117.929 chr14 37499137 37499417 + 0.642857 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 95972 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 110.071-4 chr5 150550282 150550606 + 0.642857 NA intron (NM_001301063, intron 12 of 13) intron (NM_001301063, intron 12 of 13) 42313 NM_001543 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 105.643 chr1 38410303 38410550 + 0.642857 NA Intergenic L1ME2|LINE|L1 -64770 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 149.357-4 chr7 410578 410984 + 0.642857 NA Intergenic Intergenic 31356 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 128.571 chr1 56350136 56350445 + 0.642857 NA Intergenic L1ME1|LINE|L1 -64673 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 130.286-3 chr5 38561283 38561634 + 0.642857 NA intron (NR_103554, intron 1 of 8) MIR|SINE|MIR -3897 NR_037423 100500824 NR_037423 ENSG00000265304 MIR3650 - microRNA 3650 ncRNA 151.571 chr1 43073607 43074013 + 0.642857 NA Intergenic Intergenic -74094 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 178.5-3 chr7 48027240 48027726 + 0.642857 NA intron (NM_001030019, intron 1 of 9) intron (NM_001030019, intron 1 of 9) 1624 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 111.429-11 chr6 55691775 55692131 + 0.642857 NA Intergenic L1M5|LINE|L1 -112739 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 168.643-3 chr2 74843322 74843771 + 0.642857 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 10891 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 96.7857-4 chr10 62945421 62945662 + 0.642857 NA Intergenic Intergenic -126374 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 129.786-6 chr8 126967160 126967497 + 0.642857 NA Intergenic Intergenic -45826 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 127.857-3 chr15 38169301 38169726 + 0.642857 NA Intergenic Intergenic -83323 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 152.071-2 chr13 103833169 103833632 + 0.642857 NA Intergenic THE1C-int|LTR|ERVL-MaLR 408200 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 97.9286-5 chr14 30913175 30913453 + 0.642857 NA intron (NM_001083893, intron 10 of 17) intron (NM_001083893, intron 10 of 17) -23506 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 106.929-3 chr3 177897514 177897746 + 0.642857 NA non-coding (NR_110826, exon 3 of 3) non-coding (NR_110826, exon 3 of 3) 80765 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 109.357 chr4 96884843 96885143 + 0.642857 NA Intergenic Intergenic -481933 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 121.5 chr1 214950768 214951010 + 0.642857 NA Intergenic Intergenic -54653 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 170.714-2 chr2 150434212 150434651 + 0.642857 NA Intergenic Intergenic 53264 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 148.143-4 chr4 67276716 67277291 + 0.642857 NA Intergenic HERV9NC-int|LTR|ERV1 144997 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 98.1428-5 chr7 66121044 66121196 + 0.642857 NA intron (NM_001040648, intron 1 of 2) AluSq2|SINE|Alu 6273 NM_014478 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9|RPC9 CGRP receptor component protein-coding 104.071 chr13 75497588 75497803 + 0.642857 NA Intergenic AluJr4|SINE|Alu -15526 NM_014832 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 128.357-4 chr8 137759766 137760138 + 0.642857 NA Intergenic Intergenic 323593 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 129.286-5 chr15 94909790 94910247 + 0.642857 NA Intergenic L1PA16|LINE|L1 54655 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 125.929-3 chr14 54577958 54578428 + 0.642857 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 10581 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 102.929-9 chr6 143811977 143812185 + 0.642857 NA intron (NM_001100165, intron 11 of 11) intron (NM_001100165, intron 11 of 11) -31192 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 164.5-2 chr6 35930132 35930491 + 0.642857 NA Intergenic Charlie2a|DNA|hAT-Charlie -9131 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 171.143 chr10 122862354 122862665 + 0.642857 NA intron (NM_152644, intron 1 of 3) L1ME4a|LINE|L1 -16652 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding 103-5 chr17 32185546 32185715 + 0.642857 NA intron (NM_001033566, intron 8 of 19) AluJb|SINE|Alu -34059 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 131.786-8 chr8 28901830 28902294 + 0.642857 NA intron (NM_024567, intron 2 of 10) intron (NM_024567, intron 2 of 10) 10748 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 170.429 chr11 112457614 112458100 + 0.642857 NA Intergenic L1ME4a|LINE|L1 -24375 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 122-6 chr17 9791172 9791517 + 0.642857 NA 5' UTR (NM_001105571, exon 1 of 6) 5' UTR (NM_001105571, exon 1 of 6) 248 NM_001105571 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 128.5 chr16 57791569 57791869 + 0.642857 NA intron (NM_001318715, intron 2 of 19) intron (NM_001318715, intron 2 of 19) 6298 NM_001130099 3801 Hs.23131 NM_005550 ENSG00000140859 KIFC3 - kinesin family member C3 protein-coding 105.857-6 chr15 93276526 93276690 + 0.642857 NA Intergenic Intergenic 70542 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 203.786 chr5 110320479 110320864 + 0.642857 NA Intergenic Intergenic 193244 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 102.857 chr1 119922185 119922440 + 0.642857 NA exon (NM_024408, exon 28 of 34) exon (NM_024408, exon 28 of 34) -25797 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 126-3 chr11 91008001 91008228 + 0.642857 NA Intergenic Intergenic -138912 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 132.429-4 chr8 116479259 116479639 + 0.642857 NA Intergenic Intergenic -154390 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 111.357-4 chr14 53747464 53747722 + 0.642857 NA Intergenic Intergenic 200891 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 212.214 chr3 36165225 36165894 + 0.642857 NA Intergenic (GTACATT)n|Simple_repeat|Simple_repeat -214928 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 103.214-2 chr1 196383454 196383965 + 0.642857 NA intron (NM_001287820, intron 13 of 26) intron (NM_001287820, intron 13 of 26) 198772 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 142 chr10 69300235 69300875 + 0.642857 NA intron (NM_033497, intron 4 of 20) intron (NM_033497, intron 4 of 20) -15299 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 128.214-4 chr18 52792828 52793027 + 0.642857 NA intron (NM_005215, intron 2 of 28) HUERS-P3b-int|LTR|ERV1 -444174 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 112.571-4 chr11 33661368 33661613 + 0.642857 NA intron (NM_012194, intron 20 of 20) MIRb|SINE|MIR 39250 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 206.214 chr11 109627560 109628134 + 0.642857 NA Intergenic Intergenic 205657 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 151.5-2 chr12 69265907 69266215 + 0.642857 NA intron (NM_007007, intron 9 of 9) A-rich|Low_complexity|Low_complexity 7157 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 139.857-2 chr14 79822220 79822665 + 0.642857 NA intron (NM_138970, intron 5 of 5) Charlie18a|DNA|hAT-Charlie -388977 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 180.929 chr4 56854462 56854822 + 0.642857 NA Intergenic Intergenic -32773 NR_073418 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 126.643-4 chr2 173072723 173073113 + 0.642857 NA Intergenic Intergenic -2928 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 133.929-4 chr4 131089974 131090392 + 0.642857 NA Intergenic Intergenic -674655 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 126.857 chr1 15703181 15703538 + 0.642857 NA intron (NM_015164, intron 1 of 19) intron (NM_015164, intron 1 of 19) 19039 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 201.643-2 chr3 98930716 98931322 + 0.642857 NA Intergenic L1PA10|LINE|L1 -29324 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 131.786-3 chr19 34873312 34873584 + 0.642857 NA Intergenic Intergenic 25495 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 104.429-2 chr2 33978962 33979201 + 0.642857 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -88145 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 140.786-3 chr4 11034536 11035122 + 0.642857 NA Intergenic Intergenic -333998 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 105.429-9 chr4 65949539 65949768 + 0.642857 NA Intergenic Intergenic -279158 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 134.857-6 chr2 64920883 64921137 + 0.642857 NA intron (NR_036586, intron 1 of 2) L1ME1|LINE|L1 11437 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 153.286-3 chr3 147177439 147177788 + 0.642857 NA Intergenic MIR|SINE|MIR 214817 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 134.357-2 chr8 109916503 109916871 + 0.642857 NA Intergenic Intergenic 59084 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 97.4286-3 chr21 29279545 29279762 + 0.642857 NA intron (NR_027072, intron 1 of 1) L1ME3|LINE|L1 -19269 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 106.857-3 chr2 20307166 20307445 + 0.642857 NA intron (NM_001282790, intron 6 of 18) intron (NM_001282790, intron 6 of 18) 20081 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 96.8571-6 chr8 119587654 119587880 + 0.642857 NA intron (NM_001330600, intron 13 of 25) intron (NM_001330600, intron 13 of 25) 5241 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 161.143-5 chr6 151469623 151469939 + 0.642857 NA 3' UTR (NM_001286562, exon 4 of 4) 3' UTR (NM_001286562, exon 4 of 4) 17315 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 115.5-3 chr4 41452129 41452449 + 0.642857 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) -85868 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 147.214-3 chr6 76662522 76662903 + 0.642857 NA Intergenic Intergenic -69089 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 116.286-4 chr22 36651596 36651822 + 0.642857 NA intron (NM_006078, intron 1 of 3) L2a|LINE|L2 51149 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 132-11 chr9 32245228 32245573 + 0.642857 NA Intergenic Intergenic -139203 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 114-5 chr15 64470616 64470924 + 0.642857 NA Intergenic AluSg|SINE|Alu -28650 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 226.786 chr4 82687852 82688548 + 0.642857 NA intron (NM_001037582, intron 2 of 4) intron (NM_001037582, intron 2 of 4) 65230 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 135.357-3 chr20 7715116 7715541 + 0.642857 NA Intergenic Intergenic 225130 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 99.2143-4 chr3 82131290 82131506 + 0.642857 NA intron (NR_147146, intron 1 of 8) BLACKJACK|DNA|hAT-Blackjack 145256 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 129.286-8 chr22 35381327 35381567 + 0.642857 NA intron (NM_002133, intron 1 of 4) intron (NM_002133, intron 1 of 4) 351 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 103.214-7 chr18 8617657 8617885 + 0.642857 NA intron (NM_001025300, intron 1 of 5) MIR|SINE|MIR 8326 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 149.571-4 chrX 99004918 99005427 + 0.642857 NA Intergenic THE1B|LTR|ERVL-MaLR 1405101 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 101.143-2 chr10 20903977 20904257 + 0.642857 NA intron (NM_001173484, intron 4 of 6) MER44A|DNA|TcMar-Tigger -6515 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 113.857-5 chr2 139654973 139655151 + 0.642857 NA Intergenic AluSx1|SINE|Alu 757738 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 172.357 chr9 24521156 24521626 + 0.642857 NA Intergenic Intergenic 24285 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 219.857 chr7 10469690 10470123 + 0.642857 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -232770 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 153.286-4 chr4 99610580 99611013 + 0.642857 NA intron (NM_001300785, intron 12 of 17) intron (NM_001300785, intron 12 of 17) 43883 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 107.643 chr10 112396597 112396933 + 0.642857 NA intron (NM_203379, intron 2 of 20) intron (NM_203379, intron 2 of 20) 20567 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long chain family member 5 protein-coding 142.714-7 chr8 63035654 63035983 + 0.642857 NA intron (NM_003878, intron 1 of 8) intron (NM_003878, intron 1 of 8) 2988 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 124.857-8 chr9 29673068 29673336 + 0.642857 NA Intergenic MamGypsy2-I|LTR|Gypsy -459601 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 119-3 chr19 17522372 17522616 + 0.642857 NA promoter-TSS (NM_173544) promoter-TSS (NM_173544) -807 NM_001098524 199786 Hs.434133 NM_173544 ENSG00000167483 NIBAN3 BCNP1|FAM129C niban apoptosis regulator 3 protein-coding 156.5 chr13 71510489 71510871 + 0.642857 NA intron (NM_004392, intron 2 of 6) L1ME3Cz|LINE|L1 356512 NM_080760 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 133.286-10 chr5 141008054 141008492 + 0.642857 NA intron (NM_018911, intron 3 of 3) L2b|LINE|L2 41506 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 179.357 chr1 82643688 82644079 + 0.642857 NA Intergenic Intergenic -259300 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 135.214-7 chr5 170914336 170914749 + 0.642857 NA intron (NM_022897, intron 8 of 27) intron (NM_022897, intron 8 of 27) 52524 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 102.214-6 chr17 60403635 60403866 + 0.642857 NA Intergenic Intergenic -11617 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 105.357-3 chr13 107205268 107205582 + 0.642857 NA intron (NM_001080396, intron 2 of 2) intron (NM_001080396, intron 2 of 2) 115538 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 154.5-3 chr3 106342844 106343216 + 0.642857 NA Intergenic Intergenic -473629 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 143.214-6 chr7 86423522 86423794 + 0.642857 NA Intergenic Intergenic -220251 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 174.5 chr13 105879262 105879791 + 0.642857 NA Intergenic Intergenic 172696 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 108.857-5 chr2 190719220 190719596 + 0.642857 NA Intergenic Intergenic 60250 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 103.071-4 chr17 53935247 53935473 + 0.642857 NA Intergenic L1MCc|LINE|L1 112433 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 102.286 chr1 40020103 40020524 + 0.642857 NA Intergenic Intergenic -19752 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 125.571-7 chr17 47962498 47962739 + 0.642857 NA Intergenic AluSx|SINE|Alu -4735 NM_024320 79170 Hs.368260 NM_024320 ENSG00000167183 PRR15L ATAD4 proline rich 15 like protein-coding 119.571-3 chr12 16087093 16087408 + 0.642857 NA Intergenic Intergenic 175918 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 111.429-5 chr18 3617650 3617869 + 0.642857 NA intron (NM_001242761, intron 7 of 11) AluSq2|SINE|Alu 14022 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 137.286-6 chr9 79995978 79996267 + 0.642857 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 21099 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 147.714 chr5 119268470 119268786 + 0.642857 NA promoter-TSS (NM_001077654) promoter-TSS (NM_001077654) -131 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 144.143-6 chr8 133881379 133881790 + 0.642857 NA Intergenic MIR3|SINE|MIR -4912 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 96.9286-4 chr3 181209233 181209745 + 0.642857 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -22248 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 164.571-7 chr6 41916206 41916541 + 0.642857 NA intron (NM_001305456, intron 2 of 4) AluSp|SINE|Alu 4570 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 151.5-4 chr3 31411602 31411961 + 0.642857 NA Intergenic Intergenic -121144 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 97.5 chr1 159509967 159510184 + 0.642857 NA Intergenic Intergenic 25932 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 106.429-4 chr18 10521539 10521793 + 0.642857 NA Intergenic Intergenic -4361 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 171.857 chr18 42599757 42600128 + 0.642857 NA intron (NR_046174, intron 7 of 9) L1MCa|LINE|L1 413274 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 177.786 chr16 19517469 19517876 + 0.642857 NA intron (NR_136689, intron 1 of 5) intron (NR_136689, intron 1 of 5) 4426 NM_001324066 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 158.643 chr1 109956090 109956676 + 0.642857 NA Intergenic L1ME4b|LINE|L1 -28382 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 195.357-4 chr6 9289572 9290071 + 0.642857 NA Intergenic LTR12C|LTR|ERV1 637612 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 114.286-5 chr2 111142280 111142561 + 0.642857 NA intron (NM_001204113, intron 4 of 5) intron (NM_001204113, intron 4 of 5) 21506 NM_001204113 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 194.786 chr4 41690015 41690410 + 0.642857 NA intron (NM_001330786, intron 21 of 22) L2b|LINE|L2 58758 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 166.5 chr1 100135857 100136429 + 0.642857 NA intron (NM_019083, intron 1 of 10) Tigger3a|DNA|TcMar-Tigger 2993 NM_019083 54482 Hs.729095 NM_019083 ENSG00000122435 TRMT13 CCDC76 tRNA methyltransferase 13 homolog protein-coding 145.286-6 chr16 78740091 78740620 + 0.642857 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 640701 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 100.929-6 chr21 28333577 28333815 + 0.642857 NA Intergenic Intergenic -105029 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 100.857-2 chr1 175856600 175856932 + 0.642857 NA Intergenic Intergenic -20577 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 155.357-2 chr14 22536214 22536558 + 0.642857 NA Intergenic Intergenic 20676 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 183.214 chr8 124457044 124457606 + 0.642857 NA Intergenic Intergenic 6505 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 141.643-3 chr8 137611694 137611962 + 0.642857 NA Intergenic Intergenic -198240 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 114.571-8 chr2 101443584 101443907 + 0.642857 NA intron (NM_001367509, intron 4 of 13) L1MDb|LINE|L1 31367 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 166.286-2 chr4 31087391 31087836 + 0.642857 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -83531 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 147.214 chr1 119940269 119940662 + 0.642857 NA intron (NM_001200001, intron 19 of 21) intron (NM_001200001, intron 19 of 21) -43950 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 135-7 chr17 83155014 83155468 + 0.642857 NA Intergenic Intergenic -71656 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 123.286-8 chr3 19471723 19472075 + 0.642857 NA intron (NM_144633, intron 11 of 15) intron (NM_144633, intron 11 of 15) -156968 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 109.786-3 chr2 163075740 163076196 + 0.642857 NA Intergenic Intergenic -237201 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 110.571-11 chr8 123033063 123033378 + 0.642857 NA intron (NM_024295, intron 1 of 7) intron (NM_024295, intron 1 of 7) -7448 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 101.643-3 chr10 28591032 28591201 + 0.642857 NA intron (NM_100486, intron 6 of 12) intron (NM_100486, intron 6 of 12) 57998 NM_016628 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 169.071 chr22 22108509 22108858 + 0.642857 NA Intergenic AluSg|SINE|Alu -64749 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 96.8571-4 chr2 58711046 58711217 + 0.642857 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 190378 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 112.429-8 chr4 69958289 69958484 + 0.642857 NA intron (NM_001891, intron 4 of 6) intron (NM_001891, intron 4 of 6) 2625 NM_001891 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 124.286 chr1 114993493 114993717 + 0.642857 NA intron (NR_104211, intron 31 of 32) MIR|SINE|MIR -36219 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 116.786-9 chr9 29016849 29017239 + 0.642857 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -128089 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 110.071-2 chr16 74931025 74931329 + 0.642857 NA intron (NM_001324172, intron 8 of 13) LTR37-int|LTR|ERV1 53946 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 179.357-2 chr14 40840703 40841233 + 0.642857 NA Intergenic Intergenic -113743 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 153.643-2 chr12 43458249 43458845 + 0.642857 NA intron (NM_025003, intron 11 of 38) L2a|LINE|L2 93656 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 146.857 chr16 59745797 59746120 + 0.642857 NA Intergenic Intergenic 9233 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 151.643-2 chr17 82718328 82718563 + 0.642857 NA non-coding (NR_046408, exon 2 of 7) non-coding (NR_046408, exon 2 of 7) 1739 NM_024619 79672 Hs.31431 NM_024619 ENSG00000141560 FN3KRP FN3KL fructosamine 3 kinase related protein protein-coding 154.571-3 chr5 31032213 31032543 + 0.642857 NA Intergenic Intergenic -161308 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 142.643 chr20 17173373 17173930 + 0.642857 NA Intergenic Intergenic -52456 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 140.357-3 chr6 65615968 65616326 + 0.642857 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -36343 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 123.643-5 chr9 34065361 34065715 + 0.642857 NA Intergenic Intergenic -16339 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 127.429-5 chr18 9253044 9253431 + 0.642857 NA intron (NM_001204056, intron 7 of 11) L1MA4|LINE|L1 -81536 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 106.357-5 chr2 126563702 126563938 + 0.642857 NA Intergenic L1MB5|LINE|L1 -92115 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 125.143-12 chrX 133517636 133518023 + 0.642857 NA Intergenic L1MB4|LINE|L1 -102340 NM_001448 2239 Hs.58367 NM_001448 ENSG00000076716 GPC4 K-glypican glypican 4 protein-coding 101.571-7 chr18 24116862 24117130 + 0.642857 NA intron (NM_001135993, intron 7 of 13) AluJb|SINE|Alu 3669 NM_001292030 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 134.643-2 chr1 175056389 175056649 + 0.642857 NA Intergenic Intergenic -11314 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 102.714-10 chr5 23027811 23028323 + 0.642857 NA Intergenic Intergenic -174723 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 120.643-6 chr4 72915370 72915680 + 0.642857 NA Intergenic Intergenic 154191 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 127.929-4 chr4 5415354 5415567 + 0.642857 NA intron (NM_001345969, intron 5 of 10) intron (NM_001345969, intron 5 of 10) -109109 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 102.929-3 chr15 56286685 56286871 + 0.642857 NA Intergenic Intergenic -41696 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 100.286-4 chr11 113262396 113262644 + 0.642857 NA intron (NM_181351, intron 16 of 18) intron (NM_181351, intron 16 of 18) 11381 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 168.143 chr17 53462441 53462886 + 0.642857 NA Intergenic Intergenic -360264 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 97.5714 chr1 76998718 76998879 + 0.642857 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) -61345 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 115.571-2 chr10 75746920 75747259 + 0.642857 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 34634 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 138.357-5 chr20 20046284 20046782 + 0.642857 NA intron (NM_016652, intron 6 of 14) Tigger17a|DNA|TcMar-Tigger 5959 NM_001278628 51340 Hs.171342 NM_016652 ENSG00000101343 CRNKL1 CLF|CRN|Clf1|HCRN|MSTP021|SYF3 crooked neck pre-mRNA splicing factor 1 protein-coding 112-8 chr4 85180567 85180872 + 0.642857 NA Intergenic Intergenic 213235 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 154-2 chr2 102713350 102713853 + 0.642857 NA Intergenic AluSx|SINE|Alu 23287 NM_001322081 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 154.429 chr19 39793058 39793354 + 0.642857 NA Intergenic Intergenic 16612 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 166.714-3 chr7 47492261 47492674 + 0.642857 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -27664 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 121.643 chr2 4682135 4682656 + 0.642857 NA Intergenic Intergenic -26173 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 127.357 chr10 17483655 17484010 + 0.642857 NA Intergenic MER96B|DNA|hAT-Tip100 -29237 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 109.929-6 chr6 54739181 54739581 + 0.642857 NA Intergenic L1MD1|LINE|L1 -107390 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 183.643-3 chr7 50081498 50081927 + 0.642857 NA intron (NM_007009, intron 3 of 7) intron (NM_007009, intron 3 of 7) 11534 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 155.857-4 chr3 94529265 94529764 + 0.642857 NA Intergenic L1ME4a|LINE|L1 -408749 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 216.143 chr5 149245706 149246166 + 0.642857 NA intron (NM_001370418, intron 11 of 18) AluJo|SINE|Alu -25902 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 105.143-11 chr2 158890456 158890709 + 0.642857 NA Intergenic Intergenic -78052 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 132.143-2 chr1 205918221 205918725 + 0.642857 NA intron (NM_052934, intron 19 of 20) intron (NM_052934, intron 19 of 20) -16440 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 183.643 chr20 46023564 46023902 + 0.642857 NA intron (NM_001134771, intron 1 of 25) L2b|LINE|L2 -1660 NR_147699 109729184 Hs.675276 NR_147699 ENSG00000204044 SLC12A5-AS1 - SLC12A5 and MMP9 antisense RNA 1 ncRNA 125.143-9 chr4 101097567 101097914 + 0.642857 NA intron (NM_001130691, intron 5 of 12) intron (NM_001130691, intron 5 of 12) 143132 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 129.214-4 chr3 7968341 7968717 + 0.642857 NA intron (NR_110131, intron 2 of 3) intron (NR_110131, intron 2 of 3) 47778 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 130.286-2 chr2 145291443 145291791 + 0.642857 NA Intergenic Intergenic 623650 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 105.786-7 chr4 30577769 30578004 + 0.642857 NA Intergenic Intergenic -142483 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 97.9285 chr10 100667237 100667512 + 0.642857 NA Intergenic MER33|DNA|hAT-Charlie -68022 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 154.286-2 chr2 173619192 173619572 + 0.642857 NA Intergenic Intergenic 264510 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 120.214-12 chr7 143274644 143275066 + 0.642857 NA intron (NR_133932, intron 2 of 2) Tigger3a|DNA|TcMar-Tigger -10044 NM_001242773 135932 Hs.17558 NM_153345 ENSG00000178826 TMEM139 - transmembrane protein 139 protein-coding 134.571-7 chr18 69841844 69842258 + 0.642857 NA 3' UTR (NM_152721, exon 8 of 8) 3' UTR (NM_152721, exon 8 of 8) 105822 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 190.929-4 chr7 32049071 32049463 + 0.642857 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 21140 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 102.071-4 chr15 89507430 89507749 + 0.642857 NA intron (NR_027074, intron 2 of 2) Tigger2|DNA|TcMar-Tigger -11006 NR_110261 51458 Hs.459284 NM_016321 ENSG00000140519 RHCG C15orf6|PDRC2|RHGK|SLC42A3 Rh family C glycoprotein protein-coding 115.857-8 chr7 11730143 11730405 + 0.642857 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 101924 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 173.571 chr2 114735408 114735709 + 0.642857 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 97990 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 134.571-8 chr20 17757530 17757874 + 0.642857 NA Intergenic MLT1G|LTR|ERVL-MaLR 57754 NM_001014977 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 129.5-2 chr11 99655024 99655405 + 0.642857 NA intron (NM_175566, intron 1 of 21) LTR26D|LTR|ERV1 99069 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 242.143 chr2 155171350 155171740 + 0.642857 NA Intergenic Intergenic 472850 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 111.214 chr1 89825658 89825920 + 0.642857 NA intron (NM_018103, intron 1 of 2) CR1_Mam|LINE|CR1 3850 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 146.571-5 chr3 1557140 1557563 + 0.642857 NA Intergenic Intergenic 464327 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 189.571 chr11 124674918 124675323 + 0.642857 NA intron (NM_017425, intron 1 of 4) intron (NM_017425, intron 1 of 4) 1183 NM_001199922 54414 Hs.10056 NM_018978 ENSG00000110013 SIAE AIS6|CSE-C|CSEC|LSE|YSG2 sialic acid acetylesterase protein-coding 156.357 chr8 105996593 105997015 + 0.642857 NA intron (NR_125797, intron 1 of 4) LTR12|LTR|ERV1 63699 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 120.143-4 chr10 43342948 43343372 + 0.642857 NA Intergenic Intergenic -28476 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 105.5 chr15 85804631 85805206 + 0.642857 NA Intergenic Intergenic -9993 NM_022480 64410 Hs.498371 NM_022480 ENSG00000183655 KLHL25 ENC-2|ENC2 kelch like family member 25 protein-coding 134.714 chr16 70416929 70417263 + 0.642857 NA intron (NM_006927, intron 1 of 6) MIRb|SINE|MIR 22004 NM_006927 6483 Hs.368611 NM_006927 ENSG00000157350 ST3GAL2 Gal-NAc6S|SIAT4B|ST3GALII|ST3GalA.2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 112.857-8 chr22 40893120 40893323 + 0.642857 NA intron (NM_022098, intron 4 of 9) intron (NM_022098, intron 4 of 9) -31108 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 132.571-6 chr2 44531671 44532043 + 0.642857 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 169910 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 153.857-5 chr4 176332803 176333279 + 0.642857 NA TTS (NM_021928) TTS (NM_021928) 13075 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 259.5 chr4 49148927 49149875 + 0.642857 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162759 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 152.143-3 chr7 40666536 40667167 + 0.642857 NA intron (NM_001193312, intron 11 of 12) L2|LINE|L2 313088 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 156.857 chr11 90205081 90205410 + 0.642857 NA intron (NM_012124, intron 8 of 10) intron (NM_012124, intron 8 of 10) 17804 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 160.571-3 chr5 968600 968959 + 0.642857 NA Intergenic L1ME1|LINE|L1 28561 NR_104615 100506688 Hs.532063 NM_001242737 ENSG00000215246 LOC100506688 - uncharacterized LOC100506688 ncRNA 189.214-3 chr8 38356391 38356951 + 0.642857 NA intron (NM_023034, intron 1 of 23) intron (NM_023034, intron 1 of 23) 25600 NM_023034 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 121.286-6 chr20 21477000 21477294 + 0.642857 NA Intergenic L1MEi|LINE|L1 36917 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 148.143 chr11 20080779 20081118 + 0.642857 NA intron (NM_182964, intron 25 of 37) intron (NM_182964, intron 25 of 37) -31645 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 176.429-5 chr8 26243976 26244299 + 0.642857 NA Intergenic Intergenic -47371 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 105-10 chr2 14704549 14704763 + 0.642857 NA Intergenic Intergenic 71939 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 136.643 chr14 19919164 19919406 + 0.642857 NA Intergenic Intergenic -1322 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 135.071-2 chr2 24349494 24349922 + 0.642857 NA intron (NM_001348182, intron 1 of 38) intron (NM_001348182, intron 1 of 38) 10828 NM_001348184 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 263.357 chr22 27639542 27640047 + 0.642857 NA Intergenic Intergenic 161962 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 133.714-4 chr14 65573389 65573660 + 0.642857 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 102422 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 137.143-2 chr10 21078831 21079090 + 0.642857 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -95030 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 146.857-7 chr8 63448384 63448814 + 0.642857 NA Intergenic Intergenic -17250 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 165.071-2 chr5 31957624 31958087 + 0.642857 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -21696 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 145.857-3 chr5 27923913 27924483 + 0.642857 NA Intergenic Intergenic 363467 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 153.357 chr1 194813283 194813611 + 0.642857 NA Intergenic Intergenic 1275268 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 135-3 chr10 119820398 119820761 + 0.642857 NA intron (NM_001243194, intron 1 of 5) intron (NM_001243194, intron 1 of 5) 1322 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 285 chr5 144882215 144882748 + 0.642857 NA Intergenic Intergenic 677090 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 102.214-2 chr10 112757916 112758138 + 0.642857 NA intron (NM_001365713, intron 8 of 8) L1ME4a|LINE|L1 -65469 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 141.357-3 chr8 118324248 118324520 + 0.642857 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -212565 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 189.214 chr15 49828842 49829337 + 0.642857 NA Intergenic Intergenic 208041 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 118.714-5 chr14 49650245 49650435 + 0.642857 NA exon (NM_001197330, exon 16 of 18) exon (NM_001197330, exon 16 of 18) -15110 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 108.071-5 chr7 11647993 11648336 + 0.642857 NA intron (NM_015204, intron 1 of 26) ERVL-E-int|LTR|ERVL 184034 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 97.7857-3 chr2 238113162 238113468 + 0.642857 NA intron (NM_194312, intron 4 of 8) L1MEg|LINE|L1 12975 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 158.929-2 chr13 63510604 63510851 + 0.642857 NA Intergenic Intergenic -182633 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 199.071-2 chr2 14727685 14728132 + 0.642857 NA Intergenic Intergenic 95191 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 215.143 chr4 125387342 125387993 + 0.642857 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 71255 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 104.357-4 chr12 125065148 125065348 + 0.642857 NA promoter-TSS (NM_001319840) promoter-TSS (NM_001319840) -187 NM_023928 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 179.143-3 chr4 30363053 30363500 + 0.642857 NA Intergenic MIRb|SINE|MIR -357093 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 103.5-2 chr10 85404340 85404660 + 0.642857 NA Intergenic Intergenic 28272 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 115.714-7 chr17 64494450 64494815 + 0.642857 NA intron (NM_007215, intron 1 of 7) L1MC4|LINE|L1 2422 NM_007215 11232 Hs.437009 NM_007215 ENSG00000256525 POLG2 HP55|MTPOLB|PEOA4|POLB|POLG-BETA|POLGB DNA polymerase gamma 2, accessory subunit protein-coding 162-3 chr5 15181391 15181694 + 0.642857 NA Intergenic MIRc|SINE|MIR 85018 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 110.5-3 chr14 63800004 63800222 + 0.642857 NA Intergenic Intergenic -52852 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 122.714 chr11 120031811 120032275 + 0.642857 NA Intergenic Intergenic 96810 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 145.429-3 chr4 65723049 65723301 + 0.642857 NA Intergenic Intergenic -52680 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 106.429-9 chr6 138318406 138318727 + 0.642857 NA intron (NM_020340, intron 27 of 33) L1ME4a|LINE|L1 -59077 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 109.286 chr14 31772232 31772507 + 0.642857 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 57800 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 119-5 chr5 52808766 52809115 + 0.642857 NA intron (NM_181501, intron 1 of 28) intron (NM_181501, intron 1 of 28) 21024 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 113.857-13 chr9 99058657 99058865 + 0.642857 NA intron (NM_001855, intron 35 of 41) MIRc|SINE|MIR -46352 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 100.286-14 chr9 120689442 120689680 + 0.642857 NA intron (NM_001080497, intron 1 of 5) L2c|LINE|L2 24909 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 96.5714-9 chr9 84251977 84252157 + 0.642857 NA Intergenic Intergenic 88691 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 191.357 chr15 75943221 75943700 + 0.642857 NA TTS (NR_037623) TTS (NR_037623) 39582 NR_037623 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 114.429-7 chr4 97122012 97122466 + 0.642857 NA Intergenic Intergenic -244687 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 97.2857-3 chr18 4014976 4015166 + 0.642857 NA intron (NM_001242761, intron 2 of 11) L4_B_Mam|LINE|RTE-X 52718 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 123.857-2 chr16 75148663 75148954 + 0.642857 NA promoter-TSS (NM_001318475) promoter-TSS (NM_001318475) -243 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 109.5-7 chr5 3278535 3278878 + 0.642857 NA Intergenic Intergenic 100871 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 185.5 chr17 63006354 63007177 + 0.642857 NA intron (NM_025185, intron 1 of 25) L1ME2z|LINE|L1 40530 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 99.4286-3 chr1 162990742 162991110 + 0.642857 NA Intergenic Intergenic -77680 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 144.857-4 chr3 123802807 123803167 + 0.642857 NA intron (NM_001321309, intron 3 of 32) intron (NM_001321309, intron 3 of 32) 81345 NM_053025 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 126.5-6 chr4 36091697 36091996 + 0.642857 NA intron (NR_146894, intron 28 of 32) (ATACAA)n|Simple_repeat|Simple_repeat 152093 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 151.429-2 chr3 4760387 4760773 + 0.642857 NA intron (NM_001168272, intron 43 of 60) MLT1D|LTR|ERVL-MaLR -8990 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 141.857-5 chr4 100745231 100745515 + 0.642857 NA Intergenic MER3|DNA|hAT-Charlie -70260 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 134.143-3 chr3 42414329 42414756 + 0.642857 NA Intergenic AluJb|SINE|Alu -3932 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 145.357-5 chr4 5606389 5606807 + 0.642857 NA intron (NM_147127, intron 16 of 21) L1MEc|LINE|L1 81442 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 151.571-2 chr12 49513425 49513698 + 0.642857 NA intron (NR_120663, intron 10 of 14) intron (NR_120663, intron 10 of 14) -25469 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 139.286-7 chr22 34987589 34987840 + 0.642857 NA intron (NR_138042, intron 1 of 4) L2a|LINE|L2 10202 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 128.5-2 chr7 4372238 4372516 + 0.642857 NA Intergenic Charlie21a|DNA|hAT-Charlie -237540 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 110.143-11 chr6 138277278 138277487 + 0.642857 NA intron (NM_020340, intron 12 of 33) L1MB4|LINE|L1 -58892 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 173.714 chr14 37475519 37475946 + 0.642857 NA intron (NM_138731, intron 12 of 13) L1MC2|LINE|L1 119517 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 115.357-4 chr2 76369120 76369446 + 0.642857 NA Intergenic Intergenic -616682 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 105.929-8 chr7 23143792 23144036 + 0.642857 NA non-coding (NR_033328, exon 7 of 12) non-coding (NR_033328, exon 7 of 12) 37253 NM_018846 55975 Hs.654817 NM_018846 ENSG00000122550 KLHL7 CISS3|KLHL6|SBBI26 kelch like family member 7 protein-coding 148.643-3 chr17 69994971 69995403 + 0.642857 NA Intergenic MSTA|LTR|ERVL-MaLR 33480 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 125.857-4 chr7 52004866 52005363 + 0.642857 NA Intergenic Intergenic -611858 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 148.286-4 chr22 35045129 35045464 + 0.642857 NA Intergenic Intergenic -20862 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 148.929-2 chr2 98200394 98200849 + 0.642857 NA intron (NR_144297, intron 12 of 18) L1MC4a|LINE|L1 51088 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 196.071 chr8 51426197 51426597 + 0.642857 NA intron (NM_144651, intron 13 of 22) intron (NM_144651, intron 13 of 22) 383048 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 205.214 chr15 96463612 96464059 + 0.642857 NA Intergenic Intergenic 130070 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 140.429-7 chr2 216388140 216388391 + 0.642857 NA Intergenic Intergenic -15782 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 120.143-9 chr2 64763093 64763366 + 0.642857 NA Intergenic Intergenic 100402 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 115.786-4 chr5 143655586 143655803 + 0.642857 NA Intergenic L1ME4b|LINE|L1 -24166 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 135-4 chr15 35244042 35244337 + 0.642857 NA Intergenic Intergenic 6863 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 147.357 chr9 36262582 36262931 + 0.642857 NA intron (NM_001128227, intron 1 of 11) L3|LINE|CR1 -4308 NM_005476 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 173.786-4 chr4 78970502 78971022 + 0.642857 NA promoter-TSS (NR_038342) promoter-TSS (NR_038342) -986 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 271.714 chr3 72755247 72755858 + 0.642857 NA intron (NM_018130, intron 10 of 10) intron (NM_018130, intron 10 of 10) -91303 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 106.143-9 chr5 130798016 130798205 + 0.642857 NA Intergenic Intergenic 367146 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 105.214-2 chr10 108822036 108822352 + 0.642857 NA Intergenic Intergenic -752901 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 145.643-3 chr7 10226477 10226849 + 0.642857 NA Intergenic FLAM_C|SINE|Alu -476013 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 110.857-6 chr2 67528137 67528429 + 0.642857 NA Intergenic L1MC1|LINE|L1 130950 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 136-3 chr4 68043328 68043762 + 0.642857 NA Intergenic Intergenic -9963 NR_046116 550113 Hs.130270 NR_046116 LOC550113 - uncharacterized LOC550113 ncRNA 113.643 chr1 195047082 195047388 + 0.642857 NA Intergenic Intergenic 1041480 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 125.357-2 chr2 25338874 25339292 + 0.642857 NA intron (NR_135490, intron 1 of 23) intron (NR_135490, intron 1 of 23) 2832 NM_022552 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 109.143-8 chr5 38460154 38460345 + 0.642857 NA intron (NM_182801, intron 4 of 5) intron (NM_182801, intron 4 of 5) 14703 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 174.143 chr10 95848762 95849094 + 0.642857 NA intron (NM_001098175, intron 7 of 9) intron (NM_001098175, intron 7 of 9) -59037 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 107.429 chr1 170873033 170873275 + 0.642857 NA Intergenic L1ME2z|LINE|L1 -62317 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 150.857-2 chr14 59076239 59076546 + 0.642857 NA Intergenic L1ME4b|LINE|L1 -112275 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 102.143 chr1 42444335 42444767 + 0.642857 NA intron (NM_001146192, intron 2 of 6) MIRc|SINE|MIR 11471 NM_032257 84217 Hs.294009 NM_032257 ENSG00000066185 ZMYND12 - zinc finger MYND-type containing 12 protein-coding 130.143-4 chr2 224921773 224922037 + 0.642857 NA intron (NM_001290263, intron 2 of 55) AluSp|SINE|Alu 25144 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 147.929-2 chr2 122702094 122702631 + 0.642857 NA Intergenic Intergenic 371119 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 156.929 chr2 45528059 45528425 + 0.642857 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 83025 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 191.143-2 chr3 123695478 123695929 + 0.642857 NA intron (NM_001321309, intron 17 of 32) intron (NM_001321309, intron 17 of 32) 6059 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 137-2 chr10 104431212 104431517 + 0.642857 NA intron (NM_001008723, intron 15 of 17) L2c|LINE|L2 48911 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 117.929-4 chr8 91309276 91309486 + 0.642857 NA intron (NM_134266, intron 4 of 18) L1MC3|LINE|L1 60062 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 102.071-8 chr3 27576530 27576744 + 0.642857 NA Intergenic Intergenic -92253 NM_001321105 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 100.5-6 chr8 14130684 14130956 + 0.642857 NA intron (NM_001322880, intron 4 of 6) LTR9D|LTR|ERV1 501130 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 140.714-3 chr18 2446237 2446595 + 0.642857 NA Intergenic MER4D1|LTR|ERV1 125089 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 101.071-7 chr9 101673129 101673385 + 0.642857 NA intron (NM_133445, intron 2 of 8) intron (NM_133445, intron 2 of 8) 65323 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 183.643-2 chr6 28169487 28170077 + 0.642857 NA TTS (NR_103448) TTS (NR_103448) 8021 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 188.714-2 chr13 45502753 45503259 + 0.642857 NA intron (NM_031431, intron 13 of 22) intron (NM_031431, intron 13 of 22) 38067 NM_031431 83548 Hs.507948 NM_031431 ENSG00000136152 COG3 SEC34 component of oligomeric golgi complex 3 protein-coding 116.786-7 chr5 88135678 88135883 + 0.642857 NA Intergenic Intergenic 133065 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 154-3 chr2 203486134 203486502 + 0.642857 NA intron (NM_001329728, intron 4 of 15) HAL1|LINE|L1 48983 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 113.071-3 chr2 232054560 232054829 + 0.642857 NA intron (NR_046477, intron 5 of 18) L1ME3A|LINE|L1 92981 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 157.357 chr18 13920541 13920962 + 0.642857 NA Intergenic L2c|LINE|L2 -5044 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 202.929 chr10 59823626 59824054 + 0.642857 NA intron (NM_005436, intron 3 of 8) Charlie11|DNA|hAT-Charlie -70385 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 105.214-13 chr7 18539280 18539559 + 0.642857 NA intron (NM_001204147, intron 1 of 9) L1MD3|LINE|L1 30149 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 188.857-2 chr15 94003216 94003707 + 0.642857 NA intron (NR_120320, intron 2 of 8) (AT)n|Simple_repeat|Simple_repeat 102760 NR_120322 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 102.643-5 chr2 210099303 210099543 + 0.642857 NA intron (NM_001307976, intron 4 of 13) intron (NM_001307976, intron 4 of 13) 69501 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 111.929-4 chr4 85255698 85255872 + 0.642857 NA Intergenic L1MB1|LINE|L1 -219365 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 126.428-2 chr9 37346485 37346725 + 0.642857 NA intron (NR_110317, intron 5 of 7) AluSz6|SINE|Alu -76091 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 136.786 chr1 48407808 48408103 + 0.642857 NA intron (NM_019073, intron 5 of 12) intron (NM_019073, intron 5 of 12) 64249 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 190.071 chr3 177589450 177590010 + 0.642857 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 147809 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 144.929 chr10 48757113 48757569 + 0.642857 NA intron (NM_020945, intron 12 of 61) L1ME1|LINE|L1 71878 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 96.4285 chr10 101480291 101480484 + 0.642857 NA intron (NM_001256856, intron 3 of 13) MLT1A0|LTR|ERVL-MaLR 107870 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 132.071 chr18 5626097 5626337 + 0.642857 NA intron (NM_001281535, intron 1 of 21) intron (NM_001281535, intron 1 of 21) 2774 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 189.214-2 chr20 51209680 51209980 + 0.642857 NA Intergenic Intergenic -186723 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 124.5-6 chr8 74837761 74838075 + 0.642857 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 13384 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 205.786-3 chr6 62858389 62858971 + 0.642857 NA Intergenic SATR1|Satellite|Satellite 461297 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 129.714-3 chr19 27938405 27938750 + 0.642857 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -144637 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 116.143-4 chr2 189007161 189007544 + 0.642857 NA intron (NM_000090, intron 44 of 50) intron (NM_000090, intron 44 of 50) 11722 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 242.643-2 chr6 162113228 162113945 + 0.642857 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -613546 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 174.643 chr7 8272491 8272867 + 0.642857 NA intron (NR_125740, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat -10067 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 155.786-3 chr5 73050646 73051015 + 0.642857 NA intron (NM_001146032, intron 10 of 24) L1MC5|LINE|L1 -69745 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 125.071-5 chr17 63807352 63807644 + 0.642857 NA intron (NM_203499, intron 8 of 17) intron (NM_203499, intron 8 of 17) -19933 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 178.286-2 chr5 121062161 121062655 + 0.642857 NA Intergenic L1MEf|LINE|L1 -260142 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 148 chr14 64871417 64871768 + 0.642857 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 8315 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 99.8572-3 chr20 24473213 24473475 + 0.642857 NA intron (NR_147606, intron 1 of 4) intron (NR_147606, intron 1 of 4) 3383 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 107.429-6 chr22 30877322 30877551 + 0.642857 NA intron (NM_001282741, intron 2 of 12) intron (NM_001282741, intron 2 of 12) -4245 NM_001282742 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 149.929 chr2 62746572 62747027 + 0.642857 NA intron (NM_001142615, intron 2 of 22) MIRc|SINE|MIR 39902 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 198.143 chr1 91322915 91323535 + 0.642857 NA intron (NM_001017975, intron 21 of 38) intron (NM_001017975, intron 21 of 38) 81612 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 105.857-2 chr1 106426975 106427170 + 0.642857 NA Intergenic (TATATATACG)n|Simple_repeat|Simple_repeat -391167 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 263.928 chr12 29447530 29448161 + 0.642857 NA intron (NM_001353179, intron 22 of 25) intron (NM_001353179, intron 22 of 25) 51848 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 118.714-8 chr3 8641805 8642067 + 0.642857 NA intron (NM_001256749, intron 1 of 11) intron (NM_001256749, intron 1 of 11) 2862 NM_001256748 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog protein-coding 106.643 chr1 41220002 41220412 + 0.642857 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 22099 NM_001172218 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 103.429-9 chr5 146174448 146174696 + 0.642857 NA intron (NM_001317965, intron 1 of 30) (AT)n|Simple_repeat|Simple_repeat 8078 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 180.071 chr1 240398971 240399340 + 0.642857 NA intron (NM_020066, intron 15 of 17) intron (NM_020066, intron 15 of 17) 213000 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 161.214 chr1 240901698 240902068 + 0.642857 NA intron (NM_001282773, intron 4 of 15) L1MEd|LINE|L1 -230389 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 179.143-2 chr2 57663196 57663544 + 0.642857 NA Intergenic Intergenic -244281 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 181.714-3 chrX 79735836 79736202 + 0.642857 NA Intergenic L1M1|LINE|L1 -278734 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 122.571-5 chr4 144751134 144751418 + 0.642857 NA Intergenic L1MC1|LINE|L1 105120 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 115.286-6 chr4 32543698 32543899 + 0.642857 NA Intergenic THE1D-int|LTR|ERVL-MaLR 192760 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 106.5-2 chr15 66351315 66351508 + 0.642857 NA intron (NM_001289986, intron 3 of 6) intron (NM_001289986, intron 3 of 6) -4069 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 97.7143-8 chr3 168504995 168505181 + 0.642857 NA intron (NR_021485, intron 3 of 15) Tigger1|DNA|TcMar-Tigger -46766 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 191.929 chr13 27954934 27955415 + 0.642857 NA non-coding (NR_135254, exon 1 of 1) non-coding (NR_135254, exon 1 of 1) 1648 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 148.286-3 chr2 179881674 179882103 + 0.642857 NA Intergenic Intergenic -20276 NM_152520 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 116.786-8 chr5 98965718 98965975 + 0.642857 NA intron (NR_151718, intron 1 of 3) L1MB1|LINE|L1 -36132 NR_157078 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 102.643-8 chr4 6028586 6028796 + 0.642857 NA intron (NM_001099433, intron 20 of 20) L3|LINE|CR1 -10145 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 139.857-5 chr4 169719602 169719927 + 0.642857 NA intron (NM_173872, intron 13 of 13) intron (NM_173872, intron 13 of 13) 38180 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 133.643-6 chr5 30279207 30279494 + 0.642857 NA Intergenic Intergenic 398790 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 191.5 chr11 76540096 76540489 + 0.642857 NA intron (NM_001300942, intron 18 of 21) intron (NM_001300942, intron 18 of 21) 95267 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 136.714-10 chr8 141816936 141817275 + 0.642857 NA Intergenic Intergenic -30792 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 146.143 chr12 28403233 28403732 + 0.642857 NA intron (NM_001352082, intron 9 of 13) MLT1A0|LTR|ERVL-MaLR -212744 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 134.786 chr13 88445486 88445788 + 0.642857 NA Intergenic Intergenic -95192 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 113.786-4 chr2 81861756 81861964 + 0.642857 NA Intergenic L2c|LINE|L2 -394914 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 118.071-5 chr22 27371127 27371386 + 0.642857 NA Intergenic Intergenic 60605 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 121.071-4 chr20 53410896 53411182 + 0.642857 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -141731 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 100.5-7 chr8 129271865 129272228 + 0.642857 NA Intergenic Intergenic -30806 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 114.143-2 chr15 73262805 73263077 + 0.642857 NA intron (NM_002499, intron 15 of 28) L1ME1|LINE|L1 -36969 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 124.286-7 chr3 33639660 33639874 + 0.642857 NA intron (NM_015097, intron 8 of 38) intron (NM_015097, intron 8 of 38) 19912 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 114.857-4 chr9 27777572 27777908 + 0.642857 NA Intergenic Intergenic -203874 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 101.714-2 chr14 40571780 40572138 + 0.642857 NA Intergenic L1ME3|LINE|L1 -382752 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 151.857 chr11 101738367 101738763 + 0.642857 NA Intergenic Intergenic -154558 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 105.643-7 chr2 34464683 34464978 + 0.642857 NA Intergenic Intergenic -212727 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 125.143-4 chr12 15374343 15374732 + 0.642857 NA intron (NM_030667, intron 1 of 26) L1MB7|LINE|L1 52029 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 103.714-14 chr3 122396478 122396689 + 0.642857 NA intron (NM_014367, intron 1 of 4) L1MB7|LINE|L1 12401 NM_014367 26355 Hs.584881 NM_014367 ENSG00000114023 FAM162A C3orf28|E2IG5|HGTD-P family with sequence similarity 162 member A protein-coding 193.143 chr17 50860962 50861372 + 0.642857 NA Intergenic Intergenic 5187 NM_001243885 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 111.643-8 chr6 91043449 91043639 + 0.642857 NA Intergenic Intergenic -456472 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 175.929-2 chr4 24823400 24823704 + 0.642857 NA intron (NM_001130726, intron 9 of 11) intron (NM_001130726, intron 9 of 11) 27979 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 119.071-3 chr3 173636 173837 + 0.642857 NA Intergenic Intergenic -22860 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 106.786-5 chr3 187723946 187724146 + 0.642857 NA intron (NM_001706, intron 9 of 9) intron (NM_001706, intron 9 of 9) 10861 NM_001134738 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 112.214-2 chr2 99679894 99680206 + 0.642857 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -190033 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 205.214-2 chr2 184499506 184499953 + 0.642857 NA Intergenic Intergenic -98800 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 218.857-2 chr6 62104921 62105333 + 0.642857 NA intron (NR_146874, intron 2 of 13) L1ME1|LINE|L1 181098 NR_146871 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 167.143-4 chr5 101576073 101576488 + 0.642857 NA Intergenic Intergenic -672998 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 111.428-4 chr3 36313431 36313760 + 0.642857 NA Intergenic Intergenic -66892 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 114.429-5 chr13 50700280 50700615 + 0.642857 NA Intergenic Intergenic -107408 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 133.286-3 chr14 64050200 64050452 + 0.642857 NA intron (NM_015180, intron 47 of 114) MLT1A0|LTR|ERVL-MaLR 44799 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 127.071-3 chr5 45930607 45930896 + 0.642857 NA Intergenic ALR/Alpha|Satellite|centr -234371 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 108.5-7 chr8 77818625 77818802 + 0.642857 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 368016 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 132.214-3 chr14 71557224 71557450 + 0.642857 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -28961 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 137.429-6 chr8 104909557 104909924 + 0.642857 NA Intergenic Intergenic -320716 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 163.429-3 chr7 31701032 31701366 + 0.642857 NA intron (NM_001145123, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 13984 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 160-2 chr6 95226291 95226678 + 0.642857 NA Intergenic Intergenic 350967 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 219.214-2 chr4 141571589 141572016 + 0.642857 NA Intergenic Intergenic -64781 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 126.5-4 chr17 65333886 65334148 + 0.642857 NA Intergenic Intergenic -123524 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 124.714-8 chr8 75920902 75921258 + 0.642857 NA Intergenic Intergenic 381112 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 110.143 chr1 25157241 25157458 + 0.642857 NA Intergenic L1ME3E|LINE|L1 75153 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 144-8 chr5 116144329 116144723 + 0.642857 NA intron (NM_001308080, intron 5 of 6) MIR|SINE|MIR 59064 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 156.857-3 chr14 40159377 40159780 + 0.642857 NA Intergenic L1MA3|LINE|L1 -727078 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 173.143 chr4 42066851 42067121 + 0.642857 NA intron (NM_006345, intron 13 of 17) intron (NM_006345, intron 13 of 17) 76456 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 127.357-2 chr14 26258347 26258716 + 0.642857 NA Intergenic Intergenic 294899 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 200.143 chr1 196610768 196611323 + 0.642857 NA Intergenic Intergenic -2605 NR_146057 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 103.071-2 chr10 111843649 111843924 + 0.642857 NA Intergenic L1ME4a|LINE|L1 339979 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 233.571 chr1 111999273 111999740 + 0.642857 NA TTS (NR_145438) TTS (NR_145438) 8970 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 138.357-3 chr14 50351888 50352183 + 0.642857 NA intron (NM_001282236, intron 3 of 8) HAL1|LINE|L1 39711 NM_001003803 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 177.857-5 chr3 63369242 63369753 + 0.642857 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -73815 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 112.786 chr1 114265181 114265454 + 0.642857 NA Intergenic ERVL-E-int|LTR|ERVL -111448 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 196.929 chr14 54741389 54741874 + 0.642857 NA intron (NM_015589, intron 3 of 11) intron (NM_015589, intron 3 of 11) -13202 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 111-5 chr3 71928637 71928857 + 0.642857 NA Intergenic Intergenic -143599 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 105.286-5 chr8 134039830 134040110 + 0.642857 NA Intergenic L1ME3A|LINE|L1 153474 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 158.5-4 chr7 6256871 6257370 + 0.642857 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 15504 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 200.214 chr12 26906815 26907436 + 0.642857 NA intron (NM_018164, intron 15 of 16) MER68B|LTR|ERVL 30856 NM_018164 55726 Hs.505077 NM_018164 ENSG00000064102 INTS13 ASUN|C12orf11|GCT1|Mat89Bb|NET48|SPATA30 integrator complex subunit 13 protein-coding 101.143 chr1 165488246 165488671 + 0.642857 NA intron (NR_026744, intron 5 of 6) MER5B|DNA|hAT-Charlie -43103 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 102.214-8 chr2 35026526 35026784 + 0.642857 NA Intergenic L1MEc|LINE|L1 349098 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 173.071-2 chr13 37624311 37624733 + 0.642857 NA Intergenic Intergenic -25678 NM_001135935 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 158.357 chr1 85353089 85353458 + 0.642857 NA intron (NM_001134445, intron 3 of 6) intron (NM_001134445, intron 3 of 6) 51233 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 100.071-5 chr3 95217993 95218166 + 0.642857 NA Intergenic MER4A1|LTR|ERV1 279816 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 110.357-3 chr20 20735775 20736141 + 0.642857 NA Intergenic L1ME4c|LINE|L1 -23314 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 149.143-3 chr14 31598160 31598685 + 0.642857 NA intron (NM_001201573, intron 1 of 8) intron (NM_001201573, intron 1 of 8) 20506 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 129.071 chr3 39723795 39724084 + 0.642857 NA Intergenic Intergenic -84975 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 154.071 chr2 96436884 96437266 + 0.642857 NA Intergenic LTR8A|LTR|ERV1 68282 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 138-5 chr2 152980952 152981344 + 0.642857 NA Intergenic LTR56|LTR|ERV1 262511 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 135.786-4 chr2 170106819 170107215 + 0.642857 NA Intergenic Intergenic -71130 NM_001083615 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 137.714 chr10 92058635 92058906 + 0.642857 NA intron (NM_001178137, intron 9 of 9) L1MA1|LINE|L1 135000 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 125.5-3 chr4 56557128 56557488 + 0.642857 NA intron (NM_001256475, intron 3 of 8) intron (NM_001256475, intron 3 of 8) 26702 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 100.5-5 chr6 36167566 36167769 + 0.642857 NA Intergenic L2c|LINE|L2 -29077 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 96.4285-5 chr2 55499442 55499829 + 0.642857 NA Intergenic Intergenic -19960 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 189.643 chr13 38459835 38460211 + 0.642857 NA Intergenic Intergenic -107701 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 106.5-11 chr8 137128899 137129195 + 0.642857 NA Intergenic Intergenic 284541 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 136.714 chr1 1849675 1849952 + 0.642857 NA intron (NM_001282538, intron 1 of 9) L1MEg|LINE|L1 41274 NM_002074 2782 Hs.430425 NM_002074 ENSG00000078369 GNB1 MRD42 G protein subunit beta 1 protein-coding 125.071 chr1 10799525 10799779 + 0.642857 NA Intergenic Intergenic -3006 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 195.214 chr14 50565867 50566375 + 0.642857 NA intron (NM_015915, intron 1 of 13) AluSx1|SINE|Alu 6096 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 156.214-2 chr2 48712860 48713192 + 0.642857 NA intron (NM_000233, intron 7 of 10) intron (NM_000233, intron 7 of 10) 42698 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 149.857-3 chr18 69581419 69581844 + 0.642857 NA intron (NM_152721, intron 2 of 7) intron (NM_152721, intron 2 of 7) 111700 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 137.857-2 chr2 155220605 155220856 + 0.642857 NA Intergenic L1MA2|LINE|L1 522035 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 111.357-8 chr3 26116455 26116796 + 0.642857 NA Intergenic L1MB3|LINE|L1 -242930 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 171-3 chr9 38427324 38427831 + 0.642857 NA Intergenic Intergenic -3123 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 127.214 chr10 76579099 76579372 + 0.642857 NA Intergenic Intergenic -308809 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 152.143-6 chr8 124799155 124799416 + 0.642857 NA Intergenic MIRb|SINE|MIR -22700 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 168.428 chr17 42403558 42404058 + 0.642857 NA 3' UTR (NM_012232, exon 2 of 2) 3' UTR (NM_012232, exon 2 of 2) -15313 NM_139276 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 114.643-7 chr5 7985962 7986284 + 0.642857 NA Intergenic L1MEg|LINE|L1 116975 NR_157178 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 100.143-5 chr18 73909596 73909785 + 0.642857 NA Intergenic L2b|LINE|L2 238144 NM_152676 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 106.5-4 chr17 60364325 60364517 + 0.642857 NA intron (NM_032582, intron 1 of 33) AluSz6|SINE|Alu 27712 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 111.643-4 chr17 58913221 58913465 + 0.642857 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 157474 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 103.929-6 chr11 84739681 84740009 + 0.642857 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -18903 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 236 chr5 17280449 17281033 + 0.642857 NA Intergenic AluSx|SINE|Alu 63110 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 151.357 chr11 34816666 34816936 + 0.642857 NA Intergenic HAL1M8|LINE|L1 -99329 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 153.286-5 chr5 181222734 181223167 + 0.642857 NA promoter-TSS (NR_045218) promoter-TSS (NR_045218) -317 NR_039781 100616342 NR_039781 ENSG00000264732 MIR4638 mir-4638 microRNA 4638 ncRNA 153.929-2 chr8 124481995 124482432 + 0.642857 NA intron (NM_007218, intron 1 of 1) intron (NM_007218, intron 1 of 1) 7446 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 124.286-10 chr4 112289462 112289726 + 0.642857 NA Intergenic Intergenic -3690 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 121.5-2 chr10 52054603 52054957 + 0.642857 NA intron (NM_001098512, intron 6 of 17) intron (NM_001098512, intron 6 of 17) 259348 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 138.929 chr18 4672293 4672593 + 0.642857 NA Intergenic L1PA15|LINE|L1 -217136 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 136.5-6 chr6 38537397 38537823 + 0.642857 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 56014 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 101.143-12 chr5 128952501 128952673 + 0.642857 NA Intergenic Intergenic -12540 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 104.714-3 chr19 38682674 38682966 + 0.642857 NA intron (NM_001322033, intron 1 of 20).2 intron (NM_001322033, intron 1 of 20).2 35171 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 177.857-4 chr2 142212860 142213231 + 0.642857 NA Intergenic Intergenic -81344 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 96.7143-2 chr10 59069379 59069661 + 0.642857 NA Intergenic Intergenic 70002 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 118.5-5 chr20 18964427 18964673 + 0.642857 NA Intergenic L1MC3|LINE|L1 -134347 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 123-13 chr4 64949996 64950316 + 0.642857 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 54344 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 172.071-3 chrX 19544962 19545323 + 0.642857 NA intron (NM_001353894, intron 14 of 16) intron (NM_001353894, intron 14 of 16) -29881 NM_001001671 389840 Hs.713701 NM_001001671 ENSG00000180815 MAP3K15 ASK3|bA723P2.3 mitogen-activated protein kinase kinase kinase 15 protein-coding 137.357-2 chr12 121239394 121240012 + 0.642857 NA 3' UTR (NM_001270485, exon 17 of 17) 3' UTR (NM_001270485, exon 17 of 17) 29574 NR_046372 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 122.714-9 chr6 156628739 156629004 + 0.642857 NA Intergenic Tigger3b|DNA|TcMar-Tigger -148984 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 237.357 chr7 119147352 119147802 + 0.642857 NA Intergenic Intergenic 759798 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 100.429-2 chr16 5432255 5432446 + 0.642857 NA Intergenic Intergenic 183900 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 142.929 chr2 38035600 38035976 + 0.642857 NA intron (NR_102712, intron 1 of 3) intron (NR_102712, intron 1 of 3) 553 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 186.643 chr16 81782186 81782531 + 0.642857 NA intron (NM_002661, intron 1 of 32) intron (NM_002661, intron 1 of 32) 3067 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 117.786-5 chr8 10970258 10970530 + 0.642857 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 64908 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 138.571-2 chr11 84691499 84692021 + 0.642857 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 29182 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 125.643-2 chr7 92808400 92808739 + 0.642857 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 25390 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 98.3571-9 chr4 128998539 128998786 + 0.642857 NA intron (NM_144643, intron 7 of 20) intron (NM_144643, intron 7 of 20) 94877 NM_001300898 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 116.357-6 chr6 56927165 56927402 + 0.642857 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 27547 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 119.071-5 chr6 57048366 57048574 + 0.642857 NA intron (NM_001286274, intron 2 of 2) intron (NM_001286274, intron 2 of 2) 1723 NM_001286276 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 138.786-2 chr3 82411517 82411807 + 0.642857 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 425520 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 118.071-3 chr13 38046446 38046740 + 0.642857 NA Intergenic L1PA15|LINE|L1 96639 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 182.571 chr2 24722083 24722487 + 0.642857 NA intron (NM_001362950, intron 14 of 23) intron (NM_001362950, intron 14 of 23) -70830 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 105.571-5 chr22 40436732 40437069 + 0.642857 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 26540 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 137.929-4 chr5 173513400 173513950 + 0.642857 NA Intergenic Intergenic -65959 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 119.286-8 chr5 128219507 128219811 + 0.642857 NA Intergenic Intergenic 135893 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 99.2143 chr11 68593972 68594270 + 0.642857 NA intron (NR_147971, intron 19 of 24) L1MEc|LINE|L1 -90423 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 109.929 chr10 84827677 84827993 + 0.642857 NA Intergenic MIR|SINE|MIR 371070 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 102.214-3 chr11 91614387 91614720 + 0.642857 NA Intergenic Intergenic -610481 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 194.143 chr1 97080530 97081000 + 0.642857 NA intron (NM_000110, intron 22 of 22) intron (NM_000110, intron 22 of 22) -15158 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 192.143 chr10 88995627 88996018 + 0.642857 NA intron (NR_135314, intron 1 of 8) AluSz|SINE|Alu -2847 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 162.429-2 chr18 45933107 45933378 + 0.642857 NA intron (NM_020964, intron 11 of 43) intron (NM_020964, intron 11 of 43) 34087 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 136-2 chr2 82527887 82528232 + 0.642857 NA Intergenic Intergenic -328744 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 113.143-11 chr8 89481501 89481802 + 0.642857 NA Intergenic Intergenic 276060 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 119.357-4 chr20 14314021 14314411 + 0.642857 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 23396 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 145.286-2 chr10 87977329 87977783 + 0.642857 NA Intergenic Intergenic 113931 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 116.143 chr1 23188636 23188887 + 0.642857 NA Intergenic FAM|SINE|Alu 5968 NM_000864 3352 Hs.121482 NM_000864 ENSG00000179546 HTR1D 5-HT1D|HT1DA|HTR1DA|HTRL|RDC4 5-hydroxytryptamine receptor 1D protein-coding 166.857-4 chr6 137053588 137054036 + 0.642857 NA Intergenic Intergenic -8632 NM_014432 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 157.929-4 chr22 27759644 27760038 + 0.642857 NA intron (NM_002430, intron 1 of 1) MIR3|SINE|MIR 41915 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 167.357-2 chr21 10688413 10688926 + 0.642857 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 167155 NM_199260 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 121.214-6 chr8 135287520 135287770 + 0.642857 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 53514 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 105.143-13 chr6 137829915 137830237 + 0.642857 NA intron (NR_049793, intron 3 of 3) L2|LINE|L2 -37183 NM_001270508 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 155.857-3 chr3 58662026 58662422 + 0.642857 NA intron (NM_138805, intron 1 of 9) intron (NM_138805, intron 1 of 9) 4550 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 126.571 chr18 3386839 3387058 + 0.642857 NA Intergenic AluSz6|SINE|Alu -24979 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 187.857-2 chr3 67801091 67801383 + 0.642857 NA intron (NR_109992, intron 3 of 6) L1PB4|LINE|L1 146540 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 98.1428-4 chr7 6566988 6567284 + 0.642857 NA Intergenic AluJr|SINE|Alu -10298 NM_001134388 55146 Hs.5268 NM_018106 ENSG00000136247 ZDHHC4 ZNF374 zinc finger DHHC-type containing 4 protein-coding 100.643 chr16 80260649 80260814 + 0.642857 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -280003 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 158.286-2 chr17 61227122 61227455 + 0.642857 NA intron (NM_001330413, intron 23 of 25) Charlie4z|DNA|hAT-Charlie 140416 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 111.214-2 chr13 46261925 46262223 + 0.642857 NA intron (NM_001282460, intron 8 of 9) intron (NM_001282460, intron 8 of 9) 35770 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 102.143-11 chr7 111380343 111380700 + 0.642857 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 181770 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 126.5 chr12 6150009 6150309 + 0.642857 NA Intergenic MLT1F|LTR|ERVL-MaLR -25484 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 101.143-14 chr6 44361783 44361990 + 0.642857 NA exon (NM_145026, exon 5 of 9) exon (NM_145026, exon 5 of 9) 19226 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 108.357 chr10 62801331 62801594 + 0.642857 NA Intergenic Intergenic -3258 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 138.357-8 chr8 61686740 61687080 + 0.642857 NA intron (NM_001164755, intron 1 of 12) intron (NM_001164755, intron 1 of 12) 2901 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 145.357-3 chr17 75139177 75139418 + 0.642857 NA intron (NM_001002032, intron 3 of 3) intron (NM_001002032, intron 3 of 3) -7502 NM_001252377 30833 Hs.67201 NM_014595 ENSG00000125458 NT5C DNT|DNT1|HEL74|P5N2|PN-I|PN-II|UMPH2|cdN|dNT-1 5', 3'-nucleotidase, cytosolic protein-coding 141.857-2 chr12 12945178 12945581 + 0.642857 NA intron (NM_018654, intron 1 of 2) intron (NM_018654, intron 1 of 2) 5005 NM_018654 55507 Hs.644599 NM_018654 ENSG00000111291 GPRC5D - G protein-coupled receptor class C group 5 member D protein-coding 109.357-2 chr8 128130719 128130977 + 0.642857 NA Intergenic L1M4a1|LINE|L1 -19268 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 101.357-9 chr22 26064541 26064807 + 0.642857 NA Intergenic Intergenic -104788 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 136.786-3 chr20 59217556 59218046 + 0.642857 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 26781 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 112.786-8 chr4 134501197 134501372 + 0.642857 NA intron (NR_147155, intron 3 of 3) L1ME1|LINE|L1 77416 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 111.429-10 chr6 25480982 25481465 + 0.642857 NA intron (NM_001173977, intron 11 of 36) MER103C|DNA|hAT-Charlie -170992 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 120.429 chr1 4914468 4914833 + 0.642857 NA Intergenic Intergenic 260041 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 148.5-2 chr2 228713674 228714056 + 0.571429 NA Intergenic L1ME2z|LINE|L1 -102470 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 129.714-5 chr3 6418637 6418913 + 0.571429 NA Intergenic Intergenic 386674 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 134-11 chrX 95689955 95690392 + 0.571429 NA Intergenic Intergenic -626947 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 102.071-3 chr11 125923435 125923751 + 0.571429 NA 3' UTR (NM_001330438, exon 12 of 12) 3' UTR (NM_001330438, exon 12 of 12) 19085 NM_013264 29118 Hs.420263 NM_013264 ENSG00000109832 DDX25 GRTH DEAD-box helicase 25 protein-coding 123.929 chr14 65946899 65947158 + 0.571429 NA Intergenic Intergenic 475926 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 108.571-5 chr3 96431402 96431765 + 0.571429 NA Intergenic MER21-int|LTR|ERVL 71619 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 120.714-7 chr7 30270281 30270612 + 0.571429 NA intron (NR_136267, intron 1 of 3) intron (NR_136267, intron 1 of 3) -14151 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 127.714 chr11 106991767 106992162 + 0.571429 NA intron (NM_001256424, intron 1 of 8) MIR|SINE|MIR 26512 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 131.429 chr1 58864561 58864949 + 0.571429 NA intron (NR_108106, intron 1 of 1) MIRc|SINE|MIR 79604 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 160 chr5 25964337 25964777 + 0.571429 NA Intergenic MER65-int|LTR|ERV1 773604 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 156.357-2 chr8 125569148 125569553 + 0.571429 NA Intergenic Intergenic 137141 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 109.429-3 chr22 45585906 45586192 + 0.571429 NA intron (NM_006486, intron 16 of 16) intron (NM_006486, intron 16 of 16) 19598 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 98.4286-4 chr2 45374604 45374815 + 0.571429 NA Intergenic MER2|DNA|TcMar-Tigger -119768 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 113.429-4 chr8 30122707 30123092 + 0.571429 NA intron (NM_001128208, intron 3 of 3) MLT1G1|LTR|ERVL-MaLR 21766 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 118.714-3 chr12 8968451 8968782 + 0.571429 NA intron (NR_137427, intron 1 of 2) L1MEc|LINE|L1 18572 NR_137426 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 236.286-3 chr5 10394273 10394816 + 0.571429 NA intron (NM_001270660, intron 7 of 24) intron (NM_001270660, intron 7 of 24) -7820 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 120.714 chr11 120158260 120158780 + 0.571429 NA Intergenic L1MEc|LINE|L1 -10457 NR_159965 107984399 Hs.638417 NR_159965 LOC107984399 - uncharacterized LOC107984399 ncRNA 163.072 chr20 51704366 51704815 + 0.571429 NA intron (NM_006045, intron 4 of 27) AluSp|SINE|Alu 63800 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 111.714-3 chr11 15646190 15646449 + 0.571429 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 2434 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 107.214-2 chr22 24782983 24783294 + 0.571429 NA Intergenic L1M4|LINE|L1 -8418 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 165.428 chr2 122452172 122452667 + 0.571429 NA Intergenic L1PA16|LINE|L1 621062 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 105.714-7 chr2 77944210 77944462 + 0.571429 NA intron (NR_110288, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 10690 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 140.714 chr1 234702618 234702926 + 0.571429 NA Intergenic Intergenic -21270 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 165.714 chr10 126768194 126768608 + 0.571429 NA Intergenic Intergenic -97891 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 110.071 chr10 110121607 110122057 + 0.571429 NA intron (NM_001320591, intron 9 of 15) intron (NM_001320591, intron 9 of 15) -85773 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 97.643 chr1 223728389 223728685 + 0.571429 NA intron (NM_001146068, intron 2 of 20) MLT1G3|LTR|ERVL-MaLR 15998 NM_001748 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 171.286 chr11 27296998 27297368 + 0.571429 NA Intergenic MSTC|LTR|ERVL-MaLR 66032 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 96.7857-6 chr4 59103334 59103613 + 0.571429 NA Intergenic Intergenic 89900 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 149.429 chr10 73649012 73649355 + 0.571429 NA intron (NM_001114133, intron 3 of 3) intron (NM_001114133, intron 3 of 3) 1857 NM_024875 79933 Hs.645273 NM_024875 ENSG00000166317 SYNPO2L - synaptopodin 2 like protein-coding 141.143-3 chr5 175188678 175189163 + 0.571429 NA Intergenic AluJo|SINE|Alu -193189 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 163.286-2 chr2 103184664 103185050 + 0.571429 NA Intergenic L1MDa|LINE|L1 -200428 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 168.857-3 chr16 74142438 74143209 + 0.571429 NA Intergenic Intergenic 72698 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 126.286-3 chr2 233495750 233496090 + 0.571429 NA intron (NM_001365479, intron 24 of 31) L1ME4b|LINE|L1 69653 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 129.572-2 chr6 154438366 154438764 + 0.571429 NA intron (NM_001368116, intron 4 of 12) MIRb|SINE|MIR -4492 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 105 chr1 66068714 66069205 + 0.571429 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -18241 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 143.214-4 chr17 57800205 57800567 + 0.571429 NA Intergenic Intergenic 49658 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 99.8572-7 chr8 136076500 136076707 + 0.571429 NA Intergenic LTR28B|LTR|ERV1 -454195 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 114.714-7 chr8 136510671 136510895 + 0.571429 NA Intergenic Intergenic -20015 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 99.1429 chr1 99515744 99515917 + 0.571429 NA Intergenic Intergenic -28026 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 112.5-7 chr5 118302756 118303088 + 0.571429 NA Intergenic L1ME1|LINE|L1 20348 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 131.571 chr10 30575767 30576140 + 0.571429 NA Intergenic Intergenic 53800 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 127.429-6 chr19 36874592 36874934 + 0.571429 NA intron (NM_001242476, intron 3 of 3) AluSp|SINE|Alu 23112 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 111.714-8 chr20 48770102 48770313 + 0.571429 NA intron (NM_020820, intron 1 of 39) MER5A|DNA|hAT-Charlie 57792 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 134.857-10 chr8 82030441 82030713 + 0.571429 NA Intergenic L1MA9|LINE|L1 -188291 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 109.143-11 chr8 103328419 103328666 + 0.571429 NA intron (NM_003506, intron 5 of 6) intron (NM_003506, intron 5 of 6) 19564 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 181.429 chr1 36641043 36641400 + 0.571429 NA Intergenic AluSz|SINE|Alu -157907 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 102.429-7 chr9 79756715 79756912 + 0.571429 NA Intergenic L1MA7|LINE|L1 -67717 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 164.857-3 chr5 89938945 89939387 + 0.571429 NA Intergenic Intergenic 77554 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 218.143-2 chr6 166287792 166288284 + 0.571429 NA Intergenic L1MC4a|LINE|L1 20354 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 130.857-8 chr8 139599309 139599625 + 0.571429 NA Intergenic LTR33|LTR|ERVL 103656 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 105.429-5 chr16 79989614 79989875 + 0.571429 NA Intergenic Intergenic 194495 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 138.714-5 chr7 19409292 19409591 + 0.571429 NA Intergenic L1PA15|LINE|L1 -264020 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 213.571-3 chr8 66673467 66674161 + 0.571429 NA intron (NR_161217, intron 1 of 1) L2a|LINE|L2 6218 NM_001204173 100533105 NM_001204173 ENSG00000104205 C8orf44-SGK3 - C8orf44-SGK3 readthrough protein-coding 100.857-7 chr12 3756670 3756910 + 0.571429 NA Intergenic Intergenic -3681 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 202.286 chr4 40233396 40234068 + 0.571429 NA intron (NM_001278360, intron 2 of 3) MER58B|DNA|hAT-Charlie 36701 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 104.429-8 chr7 98075217 98075469 + 0.571429 NA Intergenic MLT1J|LTR|ERVL-MaLR -31519 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 125-7 chr2 224682508 224682809 + 0.571429 NA Intergenic Intergenic -97261 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 109.786-5 chr5 8397524 8397827 + 0.571429 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 59889 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 181.714 chr10 33701893 33702268 + 0.571429 NA Intergenic Intergenic 70600 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 183.857-3 chr3 20443222 20443641 + 0.571429 NA Intergenic L1MA2|LINE|L1 100963 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 181.286-3 chr8 17939865 17940461 + 0.571429 NA intron (NM_001352651, intron 6 of 38) intron (NM_001352651, intron 6 of 38) 17175 NM_001352642 5108 Hs.491148 NM_006197 ENSG00000078674 PCM1 PTC4|RET/PCM-1 pericentriolar material 1 protein-coding 115.714-4 chr14 51301219 51301577 + 0.571429 NA Intergenic LTR33|LTR|ERVL 26987 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 99.5715 chr10 16056919 16057221 + 0.571429 NA Intergenic Intergenic -196537 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 117.071-5 chr5 23102650 23103235 + 0.571429 NA Intergenic AluSx3|SINE|Alu -249598 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 101.143-5 chr13 113848018 113848352 + 0.571429 NA intron (NM_000820, intron 2 of 14) intron (NM_000820, intron 2 of 14) 15891 NM_000820 2621 Hs.646346 NM_000820 ENSG00000183087 GAS6 AXLLG|AXSF growth arrest specific 6 protein-coding 101.714-6 chr2 160345146 160345545 + 0.571429 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) 62537 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 109-3 chr14 69426403 69426636 + 0.571429 NA intron (NM_001330185, intron 2 of 5) MER21A|LTR|ERVL 27827 NM_001252148 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 106.714 chr1 62416449 62416761 + 0.571429 NA Intergenic L1ME3F|LINE|L1 -19699 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 148.929 chr1 24445586 24445882 + 0.571429 NA intron (NM_001322857, intron 5 of 11) intron (NM_001322857, intron 5 of 11) 29709 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 130.714-5 chr19 5241854 5242314 + 0.571429 NA intron (NM_002850, intron 11 of 37) AluSq|SINE|Alu 98728 NM_130855 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 138.857 chr1 188448413 188448852 + 0.571429 NA Intergenic Intergenic 1005004 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 141.429-4 chr7 106262479 106262813 + 0.571429 NA intron (NM_005746, intron 7 of 10) MIRb|SINE|MIR 22337 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 116.072 chr3 96109108 96109442 + 0.571429 NA Intergenic Intergenic -250689 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 115.714-13 chr5 55697359 55697747 + 0.571429 NA intron (NM_001349385, intron 3 of 14) L2a|LINE|L2 -4500 NM_001258287 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 126.857-12 chr4 22301002 22301283 + 0.571429 NA Intergenic L2|LINE|L2 38524 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 133-6 chr5 40976960 40977402 + 0.571429 NA intron (NM_000587, intron 16 of 17) intron (NM_000587, intron 16 of 17) 67684 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 116.5-2 chr5 155423282 155423527 + 0.571429 NA Intergenic Intergenic 409649 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 119.786-7 chr6 133686912 133687552 + 0.571429 NA intron (NR_109982, intron 4 of 8) L1MEg|LINE|L1 -133915 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 97.5001 chr16 1452781 1452995 + 0.571429 NA exon (NM_001114331, exon 14 of 24) exon (NM_001114331, exon 14 of 24) -8399 NM_001143980 645811 Hs.355232 NM_001143980 ENSG00000197599 CCDC154 C16orf29 coiled-coil domain containing 154 protein-coding 151.357-2 chr12 19811682 19812097 + 0.571429 NA Intergenic Intergenic -202796 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 103.929-11 chr9 106542874 106543055 + 0.571429 NA Intergenic MLT2B2|LTR|ERVL -57964 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 123.857-7 chr8 39056054 39056368 + 0.571429 NA intron (NR_027638, intron 14 of 20) intron (NR_027638, intron 14 of 20) -37526 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 174.143-5 chr5 78744056 78744361 + 0.571429 NA Intergenic L1MEg|LINE|L1 -95436 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 127.5-6 chr5 67901446 67901869 + 0.571429 NA Intergenic Intergenic 108444 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 100.214-6 chr7 33678179 33678425 + 0.571429 NA Intergenic Intergenic -226613 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 101.571-13 chr5 129786280 129786561 + 0.571429 NA Intergenic L1M1|LINE|L1 38326 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 106.429-7 chr3 146298069 146298481 + 0.571429 NA Intergenic Intergenic -47096 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 161.572 chr14 44803068 44803514 + 0.571429 NA Intergenic Intergenic -4165 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 123.143-8 chr5 63268485 63268790 + 0.571429 NA Intergenic Tigger1|DNA|TcMar-Tigger 689818 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 169.714-3 chr7 31193152 31193491 + 0.571429 NA Intergenic Intergenic 140860 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 152.857 chr12 4590775 4591134 + 0.571429 NA intron (NR_104115, intron 2 of 5) intron (NR_104115, intron 2 of 5) 876 NR_104115 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 110.072 chr8 136852464 136852694 + 0.571429 NA intron (NR_147196, intron 4 of 5) MIRc|SINE|MIR 321781 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 107.714-4 chr17 76198471 76198730 + 0.571429 NA intron (NM_052916, intron 2 of 18) intron (NM_052916, intron 2 of 18) 41893 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 119.143-8 chr4 152455692 152455929 + 0.571429 NA intron (NM_001349798, intron 2 of 13) MLT1D|LTR|ERVL-MaLR 33606 NR_036092 100422896 NR_036092 ENSG00000264678 MIR3140 mir-3140 microRNA 3140 ncRNA 140.786 chr14 55207833 55208463 + 0.571429 NA Intergenic MamGypLTR1c|LTR|Gypsy -16563 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 113.714 chr10 103969720 103970070 + 0.571429 NA intron (NM_001304743, intron 1 of 17) intron (NM_001304743, intron 1 of 17) 2755 NM_014720 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 229.571 chr3 82558667 82559246 + 0.571429 NA Intergenic Intergenic 572814 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 207 chr4 140230009 140230603 + 0.571429 NA Intergenic LTR50|LTR|ERVL -27002 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 128.428-2 chr1 225998728 225999126 + 0.571429 NA intron (NM_152608, intron 1 of 6) intron (NM_152608, intron 1 of 6) 416 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 99.4285-2 chr2 79025417 79025735 + 0.571429 NA promoter-TSS (NM_001270040) promoter-TSS (NM_001270040) -126 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 98.3572 chr11 93070713 93070998 + 0.571429 NA Intergenic Intergenic 101232 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 238.571 chr16 77430895 77431648 + 0.571429 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 3763 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 120.786 chr11 25022604 25022922 + 0.571429 NA intron (NM_001009909, intron 9 of 11) L1PA5|LINE|L1 525710 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 96.6429 chr10 52265354 52265655 + 0.571429 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 48624 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 150.429 chr10 28129855 28130250 + 0.571429 NA intron (NR_134518, intron 5 of 16) intron (NR_134518, intron 5 of 16) -56674 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 123.286-3 chr11 84355726 84356044 + 0.571429 NA intron (NM_001142699, intron 7 of 27) L2b|LINE|L2 -38546 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 154.357-2 chr8 101772094 101772470 + 0.571429 NA intron (NM_001040625, intron 4 of 6) MER103C|DNA|hAT-Charlie 18687 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 115.929-2 chr1 106352736 106353069 + 0.571429 NA Intergenic Intergenic -324649 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 137.357-3 chr18 11725771 11726147 + 0.571429 NA intron (NM_182978, intron 1 of 11) L1MC2|LINE|L1 -25513 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 97.4285 chr1 113737177 113737454 + 0.571429 NA intron (NM_001323046, intron 3 of 15) L2a|LINE|L2 21840 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 112.5-2 chr10 34879812 34880066 + 0.571429 NA Intergenic L1MC1|LINE|L1 64171 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 123.5-3 chr12 124911015 124911406 + 0.571429 NA TTS (NM_021009) TTS (NM_021009) 3440 NM_021009 7316 Hs.520348 NM_021009 ENSG00000150991 UBC HMG20 ubiquitin C protein-coding 181.714-2 chr4 76390267 76390742 + 0.571429 NA intron (NM_001042784, intron 3 of 23) L1MA2|LINE|L1 16801 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 160.571-2 chr2 183961449 183961867 + 0.571429 NA Intergenic Intergenic -417317 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 105.429-10 chr5 36133891 36134161 + 0.571429 NA intron (NM_001007527, intron 6 of 17) intron (NM_001007527, intron 6 of 17) 13962 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 98.7142-4 chr19 45261928 45262183 + 0.571429 NA intron (NM_001199867, intron 2 of 16) MIR|SINE|MIR 10784 NM_001199867 57787 Hs.34314 NM_031417 ENSG00000007047 MARK4 MARK4L|MARK4S|MARKL1|MARKL1L|PAR-1D microtubule affinity regulating kinase 4 protein-coding 143.929 chr15 69831013 69831338 + 0.571429 NA Intergenic Intergenic -4059 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 128-4 chr2 21791997 21792369 + 0.571429 NA Intergenic MIR3|SINE|MIR -81531 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 100.071-3 chr20 18550642 18550848 + 0.571429 NA intron (NM_032986, intron 16 of 19) AluJr|SINE|Alu -16675 NM_001348957 388789 Hs.349092 NM_001348957 ENSG00000232388 SMIM26 LINC00493 small integral membrane protein 26 protein-coding 137.072 chr5 134375008 134375271 + 0.571429 NA intron (NM_003337, intron 2 of 5) intron (NM_003337, intron 2 of 5) 3570 NM_003337 7320 Hs.612096 NM_003337 ENSG00000119048 UBE2B E2-17kDa|HHR6B|HR6B|RAD6B|UBC2 ubiquitin conjugating enzyme E2 B protein-coding 110.143-5 chr11 116049267 116049722 + 0.571429 NA Intergenic Intergenic -289294 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 125.929-6 chr5 93405722 93406119 + 0.571429 NA Intergenic Intergenic 165423 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 119.214-4 chr8 142508411 142508704 + 0.571429 NA intron (NM_001702, intron 17 of 30) intron (NM_001702, intron 17 of 30) 58908 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 290.643 chr14 64933038 64933776 + 0.571429 NA 3' UTR (NM_145165, exon 4 of 4) 3' UTR (NM_145165, exon 4 of 4) 9338 NR_046320 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 124.072 chr21 32702482 32702795 + 0.571429 NA intron (NM_203446, intron 2 of 32) intron (NM_203446, intron 2 of 32) 25283 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 101.286-3 chr16 9443505 9443900 + 0.571429 NA intron (NR_126397, intron 2 of 3) AluSx3|SINE|Alu 1283 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 172.429-2 chr16 12193576 12194066 + 0.571429 NA intron (NM_032167, intron 13 of 20) L1MD|LINE|L1 217087 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 99.7144 chr9 104921641 104921815 + 0.571429 NA intron (NM_005502, intron 1 of 49) intron (NM_005502, intron 1 of 49) 6427 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 127.429-10 chr22 49459215 49459465 + 0.571429 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 84126 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 103.143-13 chr8 84331648 84331875 + 0.571429 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -83723 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 111.286-4 chr22 24149525 24149760 + 0.571429 NA intron (NM_012295, intron 29 of 36) intron (NM_012295, intron 29 of 36) -31845 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 98.6429-5 chr7 29114040 29114334 + 0.571429 NA intron (NM_001371256, intron 6 of 16) MER63A|DNA|hAT-Blackjack -10846 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 116.857-4 chr13 32621741 32622143 + 0.571429 NA intron (NM_015032, intron 1 of 34) L1ME3A|LINE|L1 35490 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 175.714-2 chr13 112589438 112589894 + 0.571429 NA Intergenic ERV24_Prim-int|LTR|ERV1 -1481 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 188.714 chr1 42634348 42634942 + 0.571429 NA intron (NM_001080850, intron 11 of 16) intron (NM_001080850, intron 11 of 16) -23778 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 152.5-4 chrX 77763103 77763562 + 0.571429 NA intron (NM_000489, intron 1 of 34) AluSq2|SINE|Alu 22884 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 137.857-4 chr6 68651252 68651800 + 0.571429 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 16244 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 127.143 chr11 65256930 65257271 + 0.571429 NA Intergenic AluSq4|SINE|Alu -4862 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 150.929-3 chr12 42609776 42610095 + 0.571429 NA Intergenic AluJb|SINE|Alu -20189 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 137.143-9 chr8 100588401 100588769 + 0.571429 NA intron (NM_152628, intron 11 of 13) MER58A|DNA|hAT-Charlie -28826 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 140 chr11 78441546 78441978 + 0.571429 NA intron (NM_024678, intron 12 of 13) intron (NM_024678, intron 12 of 13) -11926 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 149.357-6 chr8 99124189 99124623 + 0.571429 NA intron (NM_017890, intron 8 of 61) L1MB4|LINE|L1 111140 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 181.429-3 chr1 83539079 83539454 + 0.571429 NA Intergenic L1MC1|LINE|L1 93212 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 117.714-3 chr2 75702180 75702529 + 0.571429 NA exon (NM_003203, exon 3 of 17) exon (NM_003203, exon 3 of 17) 8561 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 121.786-3 chr22 34575267 34575868 + 0.571429 NA Intergenic LTR42|LTR|ERVL 422349 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 108.643-9 chr9 24958259 24958573 + 0.571429 NA Intergenic Intergenic -412519 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 104-6 chrX 36504555 36504786 + 0.571429 NA Intergenic Intergenic -64378 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 185.143 chr1 194210945 194211521 + 0.571429 NA Intergenic L1ME1|LINE|L1 906488 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 133.214-4 chr6 146368644 146369094 + 0.571429 NA intron (NM_001278065, intron 6 of 9) L1MA4|LINE|L1 -174964 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 123.214-6 chr8 144447635 144448091 + 0.571429 NA Intergenic Intergenic -3423 NM_013432 4796 Hs.675285 NM_013432 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku like, DNA repair protein protein-coding 150-5 chr9 134125041 134125385 + 0.571429 NA Intergenic MIRb|SINE|MIR -10869 NM_017588 11091 Hs.397638 NM_017588 ENSG00000196363 WDR5 BIG-3|CFAP89|SWD3 WD repeat domain 5 protein-coding 135.286-3 chr5 167410545 167410834 + 0.571429 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -162970 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 136.571-3 chr3 78731306 78731723 + 0.571429 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 287945 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 137.071-2 chr21 30698752 30699154 + 0.571429 NA Intergenic THE1B|LTR|ERVL-MaLR 19824 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 154.5-4 chr5 19741739 19742084 + 0.571429 NA intron (NM_001349559, intron 4 of 12) MER20|DNA|hAT-Charlie 144361 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 135.714-2 chr14 45435412 45435910 + 0.571429 NA Intergenic AluJo|SINE|Alu -182459 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 127.143-5 chr4 144944211 144944494 + 0.571429 NA Intergenic Intergenic 153030 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 111.429-3 chr15 76506615 76506965 + 0.571429 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -79857 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 98.5001-3 chr8 134888650 134888954 + 0.571429 NA Intergenic L1MB7|LINE|L1 38867 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 135.571-2 chr6 41006997 41007287 + 0.571429 NA intron (NR_110873, intron 1 of 5) AluSq2|SINE|Alu 16138 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 108 chr1 56884952 56885266 + 0.571429 NA intron (NM_000562, intron 6 of 10) L2c|LINE|L2 30339 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 109.643-2 chr14 58020013 58020415 + 0.571429 NA intron (NM_001001872, intron 5 of 7) MIRb|SINE|MIR 131999 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 148.143-2 chr11 87833996 87834472 + 0.571429 NA Intergenic MLT1E2|LTR|ERVL-MaLR -114823 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 97.3572 chr2 13848972 13849174 + 0.571429 NA Intergenic Intergenic 551885 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 121.286-2 chr12 14463604 14463850 + 0.571429 NA intron (NM_181352, intron 9 of 14) L2c|LINE|L2 78446 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 146.357 chr10 107989194 107989575 + 0.571429 NA intron (NR_125760, intron 4 of 4) L1M5|LINE|L1 79909 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 105.143-4 chr12 12857117 12857412 + 0.571429 NA Intergenic L1ME4b|LINE|L1 -18213 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 104.429-5 chr6 56598151 56598508 + 0.571429 NA intron (NM_001144770, intron 38 of 94) intron (NM_001144770, intron 38 of 94) 44560 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 168.072 chr10 89188597 89189050 + 0.571429 NA Intergenic MLT1A|LTR|ERVL-MaLR 18494 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 152 chr10 35270865 35271277 + 0.571429 NA intron (NM_181698, intron 3 of 11) L1MCa|LINE|L1 24046 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 99.4287 chr4 115783937 115784185 + 0.571429 NA Intergenic Intergenic -515664 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 112-5 chr14 63675015 63675346 + 0.571429 NA Intergenic Intergenic -33309 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 113.072-2 chr8 145037096 145037376 + 0.571429 NA Intergenic L1MC4|LINE|L1 -15231 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 167.428-2 chr20 50523109 50523674 + 0.571429 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 13008 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 96.6429-2 chr12 90185496 90185855 + 0.571429 NA Intergenic HAL1|LINE|L1 -107643 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 114.571 chr1 69127165 69127426 + 0.571429 NA intron (NR_146608, intron 3 of 4) L2a|LINE|L2 71397 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 123.714-4 chr4 62282047 62282405 + 0.571429 NA Intergenic Intergenic -120461 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 112.357 chr2 144649242 144649511 + 0.571429 NA Intergenic Intergenic -18591 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 134.572 chr14 69988444 69988861 + 0.571429 NA intron (NM_001034852, intron 5 of 11) L1MB7|LINE|L1 10519 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 166.786 chr2 159875347 159875731 + 0.571429 NA exon (NM_001198759, exon 12 of 39) exon (NM_001198759, exon 12 of 39) 29217 NM_001198759 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 129.286-3 chr14 50447223 50447621 + 0.571429 NA exon (NM_006575, exon 16 of 32) exon (NM_006575, exon 16 of 32) -50124 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 184.071-3 chr17 59160480 59161107 + 0.571429 NA intron (NM_018304, intron 1 of 9) AluJo|SINE|Alu 5047 NM_018304 55771 Hs.631750 NM_018304 ENSG00000068489 PRR11 - proline rich 11 protein-coding 115-6 chr8 32907213 32907452 + 0.571429 NA Intergenic Intergenic 185497 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 112-9 chr4 164760954 164761328 + 0.571429 NA intron (NM_001352885, intron 1 of 2) intron (NM_001352885, intron 1 of 2) 7010 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 131.429-2 chr10 22948819 22949105 + 0.571429 NA intron (NM_001282745, intron 3 of 18) L1MEc|LINE|L1 20909 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 108-14 chr4 156480 156723 + 0.571429 NA intron (NR_110527, intron 3 of 4) L1MB2|LINE|L1 28480 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 107.214-4 chr7 69606732 69607018 + 0.571429 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 8400 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 129.143 chr10 16978214 16978659 + 0.571429 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) 151381 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 132.786-4 chr5 35368862 35369135 + 0.571429 NA Intergenic Intergenic -138511 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 114.143-3 chr20 3727534 3727909 + 0.571429 NA Intergenic MLT1J|LTR|ERVL-MaLR -4964 NM_052970 116835 Hs.516854 NM_052970 ENSG00000132622 HSPA12B C20orf60 heat shock protein family A (Hsp70) member 12B protein-coding 101.214-9 chr6 50672762 50672981 + 0.571429 NA Intergenic Intergenic -40673 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 105.357-2 chr10 60423368 60423899 + 0.571429 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -33758 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 101.143-15 chr6 53943953 53944168 + 0.571429 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 14078 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 162.428-2 chr6 37458649 37459124 + 0.571429 NA intron (NM_015050, intron 9 of 23) intron (NM_015050, intron 9 of 23) 25665 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 96.6429-3 chr16 7929481 7929711 + 0.571429 NA Intergenic MSTB2|LTR|ERVL-MaLR 596751 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 186.429 chr1 199106628 199107018 + 0.571429 NA Intergenic L1PREC2|LINE|L1 -41775 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 97.0001-3 chr7 20253295 20253545 + 0.571429 NA Intergenic L1MA9|LINE|L1 35843 NR_134568 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 157.143 chr10 49478116 49478632 + 0.571429 NA exon (NM_000124, exon 11 of 21) exon (NM_000124, exon 11 of 21) 45907 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 108.571-3 chr2 168319318 168319660 + 0.571429 NA Intergenic MER58C|DNA|hAT-Charlie -71894 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 120.571 chr1 166091789 166092090 + 0.571429 NA intron (NR_163271, intron 1 of 2) MIRc|SINE|MIR 62859 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 129.286-10 chr5 110745788 110746262 + 0.571429 NA intron (NM_138773, intron 3 of 7) intron (NM_138773, intron 3 of 7) 7018 NM_001303249 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 96.8572-2 chr1 81516827 81517401 + 0.571429 NA intron (NR_125943, intron 1 of 3) intron (NR_125943, intron 1 of 3) 40588 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 130.857-3 chr21 30576548 30576906 + 0.571429 NA Intergenic Intergenic 13670 NM_001164434 100288287 Hs.580880 NM_001164434 ENSG00000206106 KRTAP22-2 KAP22.2 keratin associated protein 22-2 protein-coding 135.429-4 chr5 16625079 16625606 + 0.571429 NA intron (NR_109946, intron 2 of 3) LTR105_Mam|LTR|ERVL -8284 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 113.071-5 chr22 26071594 26072006 + 0.571429 NA Intergenic MER68B|LTR|ERVL -97662 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 131.5-5 chr8 122250990 122251619 + 0.571429 NA Intergenic Intergenic 317340 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 139.214 chr1 88777547 88777924 + 0.571429 NA intron (NM_006256, intron 6 of 21) MER4B|LTR|ERV1 -92531 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 104.214-7 chr6 98958090 98958287 + 0.571429 NA Intergenic Intergenic -10182 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 166.857-3 chr4 72487608 72488164 + 0.571429 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 81335 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 186.929 chr10 109281462 109281909 + 0.571429 NA Intergenic Tigger3c|DNA|TcMar-Tigger 641561 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 155.572 chr1 216724679 216725055 + 0.571429 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -1395 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 102.072 chr14 65216835 65217037 + 0.571429 NA intron (NR_103769, intron 3 of 3) intron (NR_103769, intron 3 of 3) 5411 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 121.143-5 chr5 171072163 171072620 + 0.571429 NA intron (NM_022897, intron 14 of 27) MLT1D|LTR|ERVL-MaLR 210373 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 139.143-5 chr4 71802875 71803279 + 0.571429 NA intron (NM_001204306, intron 1 of 13) intron (NM_001204306, intron 1 of 13) 964 NM_001204307 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 108.143-10 chr4 60485864 60486182 + 0.571429 NA Intergenic L1MCb|LINE|L1 -436596 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 102.286-2 chr14 47450881 47451130 + 0.571429 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -107759 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 98-6 chr8 118259217 118259425 + 0.571429 NA intron (NM_001101676, intron 4 of 4) MER20|DNA|hAT-Charlie -147502 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 109.643-6 chr6 138054000 138054203 + 0.571429 NA Intergenic L1PB1|LINE|L1 53318 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 217.714 chr15 26485555 26486032 + 0.571429 NA Intergenic L1MC3|LINE|L1 143297 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 155.357-6 chr7 123160969 123161240 + 0.571429 NA intron (NM_001324400, intron 7 of 17) L1MEd|LINE|L1 38865 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 159.572 chr15 82159235 82159625 + 0.571429 NA intron (NM_001040610, intron 14 of 17) Charlie7|DNA|hAT-Charlie 70836 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 162.857 chr18 4110183 4110645 + 0.571429 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 148061 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 115.643-2 chr20 36133960 36134227 + 0.571429 NA intron (NM_001258330, intron 3 of 20) intron (NM_001258330, intron 3 of 20) -20647 NM_012156 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 153.714 chr12 127693077 127693388 + 0.571429 NA Intergenic L1MEc|LINE|L1 -37644 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 97.7142-8 chr8 74858198 74858506 + 0.571429 NA Intergenic Charlie7|DNA|hAT-Charlie 33818 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 249.429 chr18 10958967 10959591 + 0.571429 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) 189483 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 155.643 chr2 182639644 182640076 + 0.571429 NA Intergenic L1M7|LINE|L1 -76397 NR_073366 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 103.714-22 chr8 86934434 86934661 + 0.571429 NA intron (NM_173538, intron 3 of 10) L1M5|LINE|L1 68132 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 128.643-5 chr8 113241965 113242263 + 0.571429 NA intron (NM_001363185, intron 3 of 66) A-rich|Low_complexity|Low_complexity 135038 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 151.143-2 chr22 43128638 43128918 + 0.571429 NA intron (NM_001197, intron 4 of 4) intron (NM_001197, intron 4 of 4) 14619 NR_046423 27349 Hs.349111 NM_014507 ENSG00000100294 MCAT FASN2C|MCT|MCT1|MT|NET62|fabD malonyl-CoA-acyl carrier protein transacylase protein-coding 159.5-2 chr14 64033700 64034466 + 0.571429 NA intron (NM_015180, intron 45 of 114) intron (NM_015180, intron 45 of 114) 61042 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 120.214-6 chr2 227092868 227093353 + 0.571429 NA intron (NM_000092, intron 20 of 47) LTR8A|LTR|ERV1 71449 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 130.214-3 chr17 72145064 72145511 + 0.571429 NA Intergenic Intergenic 24267 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 108.357-3 chr11 31208008 31208381 + 0.571429 NA intron (NM_001367979, intron 9 of 38) L2a|LINE|L2 161545 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 141.714 chr13 58109148 58109543 + 0.571429 NA Intergenic Intergenic -56482 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 155.714-5 chr5 35512575 35513050 + 0.571429 NA Intergenic (TCTG)n|Simple_repeat|Simple_repeat -105051 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 137.571 chr12 126506254 126506626 + 0.571429 NA Intergenic L1PA8|LINE|L1 -57113 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 117-7 chr20 50261596 50261993 + 0.571429 NA Intergenic Intergenic -5692 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 107.714-3 chr14 66547208 66547447 + 0.571429 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 39920 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 102.929-10 chr7 14587501 14587753 + 0.571429 NA intron (NM_001350717, intron 16 of 24) Tigger1|DNA|TcMar-Tigger 253823 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 133-7 chr5 164899927 164900389 + 0.571429 NA Intergenic AluSx|SINE|Alu 429879 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 156.143-2 chr17 76334873 76335311 + 0.571429 NA intron (NM_001330503, intron 2 of 8) intron (NM_001330503, intron 2 of 8) 18824 NM_001330503 5635 Hs.77498 NM_002766 ENSG00000161542 PRPSAP1 PAP39 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding 121.714-6 chr5 103745774 103746007 + 0.571429 NA Intergenic Intergenic -183101 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 106.143-6 chr2 119974540 119974888 + 0.571429 NA intron (NM_002830, intron 26 of 26) L1MC5|LINE|L1 -38363 NR_138472 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 104.429-11 chr8 136866478 136866905 + 0.571429 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 335893 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 104.572 chr14 85665422 85665744 + 0.571429 NA Intergenic Tigger14a|DNA|TcMar-Tigger 132234 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 99.0715-2 chr8 89506112 89506491 + 0.571429 NA Intergenic L1ME3B|LINE|L1 251410 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 101.643-7 chr4 85482198 85482433 + 0.571429 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 7165 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 110.429-7 chr8 128372416 128372637 + 0.571429 NA Intergenic MLT1B|LTR|ERVL-MaLR 192153 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 104.143-11 chr5 78189974 78190326 + 0.571429 NA intron (NM_003664, intron 7 of 26) intron (NM_003664, intron 7 of 26) 104548 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 111.786-6 chr4 52520160 52520509 + 0.571429 NA Intergenic Intergenic 136205 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 133.929-2 chr2 235291771 235292304 + 0.571429 NA Intergenic L1MC4a|LINE|L1 -202006 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 100.571-10 chr7 40855841 40856037 + 0.571429 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 124000 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 105-20 chrX 58228007 58228312 + 0.571429 NA Intergenic HSAT4|Satellite|centr -317526 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 179.143 chr12 120340457 120340882 + 0.571429 NA TTS (NM_002442) TTS (NM_002442) -12890 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 107.429-2 chr1 238968098 238968528 + 0.571429 NA Intergenic Intergenic -418255 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 99.5001-2 chr2 116575039 116575410 + 0.571429 NA Intergenic L1MA1|LINE|L1 1231409 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 114-4 chr12 539739 540060 + 0.571429 NA intron (NM_173593, intron 3 of 19) AluJr|SINE|Alu 46587 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 143-3 chr3 188162939 188163408 + 0.571429 NA intron (NM_001167672, intron 1 of 9) intron (NM_001167672, intron 1 of 9) -9085 NR_036497 339929 Hs.596639 NR_036497 ENSG00000270959 LPP-AS2 MYCLo-5|MYCLo-6 LPP antisense RNA 2 ncRNA 144.286 chr1 44116977 44117312 + 0.571429 NA Intergenic 7SLRNA|srpRNA|srpRNA -1677 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 97.7858-3 chr4 60490558 60490740 + 0.571429 NA Intergenic Intergenic -431970 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 171.429-2 chr22 27281166 27281501 + 0.571429 NA Intergenic Intergenic -29318 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 127.429-7 chr20 51414191 51414686 + 0.571429 NA intron (NM_012340, intron 9 of 10) AluSx|SINE|Alu 38539 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 159.429-5 chr4 101083344 101083714 + 0.571429 NA intron (NM_001130691, intron 6 of 12) intron (NM_001130691, intron 6 of 12) 157343 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 112.5-6 chr5 52350929 52351303 + 0.571429 NA Intergenic L1MB1|LINE|L1 343085 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 107.5 chr1 221573011 221573358 + 0.571429 NA Intergenic Intergenic 163716 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 111.857-15 chr6 119474338 119474658 + 0.571429 NA intron (NR_046100, intron 1 of 5) L1ME3A|LINE|L1 16804 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 110.714 chr1 60244922 60245186 + 0.571429 NA Intergenic Intergenic -171284 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 117.214-4 chr21 15206194 15206600 + 0.571429 NA Intergenic Intergenic -141397 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 116.643-5 chr5 27487507 27487852 + 0.571429 NA intron (NR_038848, intron 3 of 4) intron (NR_038848, intron 3 of 4) 15387 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 115.928-2 chr8 103868058 103868473 + 0.571429 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 49045 NM_001348499 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 112.714-3 chr15 68553131 68553499 + 0.571429 NA intron (NM_001324014, intron 2 of 12) MLT1D|LTR|ERVL-MaLR -25678 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 139.929-2 chr17 62211243 62211655 + 0.571429 NA Intergenic AluSq2|SINE|Alu 64206 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 104.857-4 chr2 111714388 111714616 + 0.571429 NA Intergenic Intergenic 56632 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 153.857 chr1 185542310 185542816 + 0.571429 NA Intergenic Intergenic 85925 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 113.357-4 chr3 152189251 152189613 + 0.571429 NA intron (NR_136178, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 15997 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 112.714-13 chr9 32182835 32183221 + 0.571429 NA Intergenic L2a|LINE|L2 -201575 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 108-3 chr10 96479776 96479998 + 0.571429 NA intron (NM_012465, intron 2 of 20) L2c|LINE|L2 34039 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 140.714-4 chr2 165296870 165297275 + 0.571429 NA exon (NM_001371247, exon 3 of 27) exon (NM_001371247, exon 3 of 27) 3017 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 106 chr10 96691802 96692101 + 0.571429 NA intron (NM_152309, intron 2 of 16) Tigger18a|DNA|TcMar-Tigger 28563 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 178-2 chr15 33650652 33651004 + 0.571429 NA intron (NM_001243996, intron 31 of 102) MER8|DNA|TcMar-Tigger -317669 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 99.5714 chr17 65243220 65243428 + 0.571429 NA Intergenic AluSx|SINE|Alu 105954 NM_001081955 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 116.214-2 chr11 62156528 62156767 + 0.571429 NA Intergenic AluSx4|SINE|Alu 32636 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 116-3 chr3 40555399 40555728 + 0.571429 NA Intergenic MER41-int|LTR|ERV1 30603 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 169-3 chr8 23902967 23903372 + 0.571429 NA Intergenic Intergenic -48363 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 115.572 chr9 122778155 122778450 + 0.571429 NA Intergenic Intergenic -10631 NM_001001923 392391 Hs.534761 NM_001001923 ENSG00000148215 OR5C1 OR5C2P|OR9-31|OR9-F olfactory receptor family 5 subfamily C member 1 protein-coding 132.571-3 chr14 39443566 39443901 + 0.571429 NA Intergenic L2a|LINE|L2 -11233 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 163.714-4 chr8 62812194 62812698 + 0.571429 NA intron (NM_001304533, intron 4 of 6) L1MD1|LINE|L1 -165415 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 142.714-2 chr11 127180988 127181441 + 0.571429 NA Intergenic LTR40b|LTR|ERVL -89856 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 105.286-2 chr2 144387294 144388001 + 0.571429 NA 3' UTR (NM_014795, exon 10 of 10) 3' UTR (NM_014795, exon 10 of 10) -54578 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 147.572 chr8 70157132 70157739 + 0.571429 NA intron (NM_001321711, intron 10 of 21) intron (NM_001321711, intron 10 of 21) -86183 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 128.286-5 chr7 10940180 10940567 + 0.571429 NA promoter-TSS (NM_002489) promoter-TSS (NM_002489) -220 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 148.5-4 chr3 7494559 7495170 + 0.571429 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 40420 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 110-4 chrX 88276617 88276937 + 0.571429 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat -470448 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 118.714-10 chr7 9646951 9647604 + 0.571429 NA Intergenic Intergenic 13007 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 136.857-4 chr3 125528525 125528967 + 0.571429 NA TTS (NM_022776) TTS (NM_022776) -8544 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 114.286-3 chr12 61227973 61228207 + 0.571429 NA Intergenic L1ME1|LINE|L1 964749 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 122.071-2 chr2 112623553 112623940 + 0.571429 NA Intergenic AluSx1|SINE|Alu 20434 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 160.5-2 chr2 198436286 198436694 + 0.571429 NA Intergenic Intergenic -61393 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 105.714-9 chr4 61560875 61561196 + 0.571429 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 358863 NM_001371342 96.7143-3 chr15 92789228 92789510 + 0.571429 NA Intergenic MSTA|LTR|ERVL-MaLR -6115 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 117.214-3 chr18 71380212 71380475 + 0.571429 NA Intergenic L1ME1|LINE|L1 198613 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 178.571-3 chr5 115986612 115987003 + 0.571429 NA intron (NM_173800, intron 3 of 19) intron (NM_173800, intron 3 of 19) 24332 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 101.571-6 chr17 77849328 77849651 + 0.571429 NA Intergenic L1MA4|LINE|L1 34598 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 224.429 chr8 122071598 122072109 + 0.571429 NA Intergenic Intergenic -430413 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 106.214 chr18 60037411 60037714 + 0.571429 NA Intergenic Intergenic 137566 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 127.928 chr4 133033769 133034261 + 0.571429 NA Intergenic L1MA3|LINE|L1 115101 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 142.571-2 chr20 56199521 56199860 + 0.571429 NA Intergenic L2a|LINE|L2 -49042 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 125.572 chr5 164805378 164805629 + 0.571429 NA Intergenic Intergenic 335224 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 97.1429-4 chr8 28862489 28862895 + 0.571429 NA intron (NM_001145159, intron 1 of 15) L1ME4c|LINE|L1 27223 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 97.0715 chr5 75721264 75721433 + 0.571429 NA intron (NR_149046, intron 2 of 2) MLT1H|LTR|ERVL-MaLR -3911 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 125-6 chr2 48500136 48500386 + 0.571429 NA intron (NM_001193475, intron 16 of 19) L1MC4|LINE|L1 -29664 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 104.643-2 chr12 66256862 66257060 + 0.571429 NA Intergenic ERVL-E-int|LTR|ERVL 5879 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 199.714-2 chr11 11598259 11598670 + 0.571429 NA intron (NM_001363464, intron 1 of 9) MLT1D|LTR|ERVL-MaLR 23541 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 110.286-7 chr5 130304407 130304685 + 0.571429 NA Intergenic L1MEc|LINE|L1 400081 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 126-5 chr14 46628877 46629202 + 0.571429 NA Intergenic Intergenic 22742 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 157.929-3 chr13 25564263 25564912 + 0.571429 NA intron (NM_016529, intron 16 of 36) intron (NM_016529, intron 16 of 36) 95813 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 126.857-4 chr12 90964222 90964626 + 0.571429 NA intron (NM_004950, intron 6 of 6) intron (NM_004950, intron 6 of 6) -9248 NM_152638 196477 Hs.128574 NM_152638 ENSG00000197651 CCER1 C12orf12 coiled-coil glutamate rich protein 1 protein-coding 109.143-3 chr1 209083444 209083922 + 0.571429 NA Intergenic Intergenic 111229 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 117.5-8 chrX 48697959 48698263 + 0.571429 NA intron (NM_003173, intron 1 of 5) MER46C|DNA|TcMar-Tigger 1377 NM_003173 6839 Hs.522639 NM_003173 ENSG00000101945 SUV39H1 H3-K9-HMTase 1|KMT1A|MG44|SUV39H suppressor of variegation 3-9 homolog 1 protein-coding 137.429-5 chr6 10823948 10824375 + 0.571429 NA intron (NR_134935, intron 2 of 14) intron (NR_134935, intron 2 of 14) 6716 NM_005906 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 174.571-2 chr4 36634264 36634725 + 0.571429 NA intron (NR_149124, intron 1 of 4) L1MA9|LINE|L1 7406 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 98.9286-4 chr5 23071401 23071752 + 0.571429 NA Intergenic Intergenic -218232 NM_001364106 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 147.714-2 chr8 92653053 92653311 + 0.571429 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 2312 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 122.572 chr4 149902718 149903145 + 0.571429 NA Intergenic Intergenic -87088 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 123-6 chr13 29447327 29447683 + 0.571429 NA intron (NM_015233, intron 2 of 8) MER95|LTR|ERV1 18845 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 105.286 chr2 38653706 38653914 + 0.571429 NA Intergenic MER21C|LTR|ERVL -12304 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 134.143-7 chr8 122898243 122898566 + 0.571429 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 116749 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 126.072 chr6 51616885 51617227 + 0.571429 NA 3' UTR (NM_138694, exon 67 of 67) 3' UTR (NM_138694, exon 67 of 67) -4814 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 102.286-10 chr6 61986026 61986298 + 0.571429 NA intron (NR_146874, intron 3 of 13) MIR|SINE|MIR 300063 NR_146871 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 141.714-8 chr8 114222774 114223077 + 0.571429 NA Intergenic Intergenic -785986 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 103.429 chr10 50463475 50463730 + 0.571429 NA intron (NM_147156, intron 4 of 10) L1MB2|LINE|L1 160354 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 120.429-9 chr5 57978395 57978673 + 0.571429 NA Intergenic MIRb|SINE|MIR -79372 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 120.429-8 chr4 161580071 161580422 + 0.571429 NA intron (NM_001128428, intron 8 of 14) intron (NM_001128428, intron 8 of 14) -442487 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 103.5 chr1 75006171 75006421 + 0.571429 NA Intergenic MER21C|LTR|ERVL -122138 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 99.4285-4 chr6 82683311 82683583 + 0.571429 NA Intergenic MIRb|SINE|MIR 319203 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 101.5-3 chr15 68323817 68324076 + 0.571429 NA intron (NM_001004439, intron 18 of 29) intron (NM_001004439, intron 18 of 29) 46201 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 119.786-5 chr2 84640004 84640307 + 0.571429 NA intron (NM_001370, intron 31 of 76) LTR86A1|LTR|ERVL 123700 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 165.214-2 chr17 61041003 61041380 + 0.571429 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 326513 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 133.286-9 chr22 27924415 27924751 + 0.571429 NA non-coding (NR_026962, exon 3 of 3) non-coding (NR_026962, exon 3 of 3) -3971 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 164.571-3 chr17 50489064 50489507 + 0.571429 NA Intergenic MLT1I|LTR|ERVL-MaLR 10425 NM_018346 55316 Hs.8033 NM_018346 ENSG00000136444 RSAD1 HemW radical S-adenosyl methionine domain containing 1 protein-coding 106.428-2 chr5 78576658 78577039 + 0.571429 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 71924 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 206.571-3 chr8 84899875 84900359 + 0.571429 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 194190 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 154.714-3 chr22 19584630 19585014 + 0.571429 NA Intergenic MER66A|LTR|ERV1 -17983 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 102.714 chr10 66921261 66921543 + 0.571429 NA intron (NR_111911, intron 3 of 6) L2a|LINE|L2 -4634 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 115.357 chr1 164380186 164380415 + 0.571429 NA Intergenic L2|LINE|L2 -179060 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 117-10 chr8 120249244 120249469 + 0.571429 NA intron (NM_021110, intron 21 of 47) intron (NM_021110, intron 21 of 47) 124254 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 192 chr3 107952848 107953332 + 0.571429 NA Intergenic L1ME3G|LINE|L1 69885 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 106.143-3 chr17 72668289 72668509 + 0.571429 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -27927 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 130.5 chr1 100696999 100697322 + 0.571429 NA Intergenic L1M1|LINE|L1 -22480 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 112.571 chr1 71354893 71355127 + 0.571429 NA Intergenic L1MC5a|LINE|L1 273686 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 117.571-4 chr16 13190311 13190558 + 0.571429 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 288836 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 121.143-6 chr6 12579073 12579429 + 0.571429 NA Intergenic Intergenic 6153 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 182.857 chr3 102945504 102946011 + 0.571429 NA Intergenic L1MC5a|LINE|L1 510742 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 141 chr1 197877341 197877612 + 0.571429 NA Intergenic L1MB3|LINE|L1 -25154 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 103.571-5 chr17 71210947 71211243 + 0.571429 NA Intergenic Intergenic -8916 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 143.857-2 chr4 44291846 44292122 + 0.571429 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 156825 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 210-2 chr7 29903148 29903515 + 0.571429 NA intron (NM_001080529, intron 7 of 8) L1ME4c|LINE|L1 86470 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 134.857-7 chr4 29523499 29523855 + 0.571429 NA Intergenic Intergenic 309385 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 118.929-2 chr14 104316982 104317351 + 0.571429 NA Intergenic Intergenic 93582 NR_146613 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 131.286-2 chr16 86130892 86131510 + 0.571429 NA Intergenic Tigger1|DNA|TcMar-Tigger -64980 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 133.714-12 chr8 126947705 126948148 + 0.571429 NA Intergenic Intergenic -65228 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 112.714-7 chr2 170428860 170429271 + 0.571429 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -78122 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 117.714-4 chr2 109056726 109057077 + 0.571429 NA Intergenic Intergenic -67681 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 162.571-2 chr10 32893488 32893905 + 0.571429 NA Intergenic Intergenic 7776 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 124.857-4 chr4 58416523 58416958 + 0.571429 NA Intergenic MIR3|SINE|MIR 119588 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 186.143 chr5 148751126 148751603 + 0.571429 NA Intergenic Charlie29a|DNA|hAT-Charlie -75229 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 129.143-9 chr9 134718974 134719309 + 0.571429 NA intron (NM_001278074, intron 4 of 65) intron (NM_001278074, intron 4 of 65) -66298 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 159.5-4 chr8 115707834 115708325 + 0.571429 NA Intergenic L1ME3B|LINE|L1 -39104 NM_014112 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 166.5-2 chr2 85622925 85623371 + 0.571429 NA intron (NM_001256727, intron 3 of 12) intron (NM_001256727, intron 3 of 12) 6962 NM_001256726 10713 Hs.654745 NM_006590 ENSG00000168883 USP39 65K|CGI-21|HSPC332|SAD1|SNRNP65 ubiquitin specific peptidase 39 protein-coding 142.143-3 chr22 22217878 22218336 + 0.571429 NA Intergenic L1PA16|LINE|L1 -26679 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 130.5-2 chr15 74049643 74050120 + 0.571429 NA Intergenic Intergenic 32669 NM_001038640 342096 Hs.546408 NM_001038640 ENSG00000159289 GOLGA6A GLP|GOLGA6 golgin A6 family member A protein-coding 104.429-6 chr6 163437634 163437921 + 0.571429 NA intron (NM_206853, intron 1 of 6) intron (NM_206853, intron 1 of 6) 23059 NM_206853 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 104-5 chr19 50735409 50735695 + 0.571429 NA Intergenic Kanga1b|DNA|TcMar-Tc2 12188 NM_002975 6320 Hs.512680 NM_002975 ENSG00000105472 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain containing 11A protein-coding 139.714 chr1 19830124 19830608 + 0.571429 NA Intergenic AluSx|SINE|Alu -15083 NM_019062 54546 Hs.124835 NM_019062 ENSG00000178828 RNF186 - ring finger protein 186 protein-coding 138.714 chr16 34592989 34593563 + 0.571429 NA Intergenic Intergenic -211796 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 127.143-4 chr3 185813772 185814324 + 0.571429 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 7083 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 188.571-2 chr8 58481361 58481808 + 0.571429 NA Intergenic L2b|LINE|L2 18579 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 129.428-3 chr8 135443981 135444387 + 0.571429 NA Intergenic Intergenic -13272 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 133.714-8 chr4 6878365 6878605 + 0.571429 NA intron (NM_001100590, intron 8 of 8) HERVL-int|LTR|ERVL -30959 NM_001113361 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 100.857 chr1 89686494 89686804 + 0.571429 NA intron (NM_032270, intron 2 of 2) intron (NM_032270, intron 2 of 2) 53529 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 140.857-2 chr5 79992235 79992636 + 0.571429 NA intron (NM_001306213, intron 1 of 22) intron (NM_001306213, intron 1 of 22) 1139 NM_001306213 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 118.571-5 chr4 100388492 100388708 + 0.571429 NA Intergenic Intergenic 6647 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 102.857-3 chr10 102710659 102710991 + 0.571429 NA intron (NM_004311, intron 1 of 5) intron (NM_004311, intron 1 of 5) 3572 NM_004311 403 Hs.182215 NM_004311 ENSG00000138175 ARL3 ARFL3|JBTS35|RP83 ADP ribosylation factor like GTPase 3 protein-coding 133.857-2 chr2 24068193 24068624 + 0.571429 NA exon (NM_016047, exon 3 of 4) exon (NM_016047, exon 3 of 4) 7918 NM_016047 51639 Hs.177861 NM_016047 ENSG00000115128 SF3B6 CGI-110|HSPC175|Ht006|P14|SAP14|SAP14a|SF3B14|SF3B14a splicing factor 3b subunit 6 protein-coding 143.286-3 chr12 53507777 53508197 + 0.571429 NA promoter-TSS (NM_001320296) promoter-TSS (NM_001320296) -503 NM_003717 8620 Hs.733076 NM_003717 ENSG00000139574 NPFF FMRFAL neuropeptide FF-amide peptide precursor protein-coding 110.571-12 chr9 133612198 133612456 + 0.571429 NA Intergenic Intergenic -24036 NM_000787 1621 Hs.591890 NM_000787 ENSG00000123454 DBH DBM|ORTHYP1 dopamine beta-hydroxylase protein-coding 135-10 chr4 31964828 31965122 + 0.571429 NA Intergenic Intergenic -32404 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 162.357-2 chr8 63692393 63692868 + 0.571429 NA Intergenic Intergenic -76800 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 139.143-2 chr12 40679820 40680188 + 0.571429 NA Intergenic AluSx|SINE|Alu -12435 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 110.5-9 chr21 16829725 16830270 + 0.571429 NA Intergenic Intergenic 239760 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 161.786-4 chr5 8156102 8156514 + 0.571429 NA Intergenic Intergenic 287160 NR_157178 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 111.214-3 chr14 59985537 59985943 + 0.571429 NA intron (NR_075071, intron 17 of 32) intron (NR_075071, intron 17 of 32) 66027 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 119.786-8 chr7 8758000 8758277 + 0.571429 NA Intergenic Intergenic 324529 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 165.429 chr1 80428002 80428453 + 0.571429 NA Intergenic L4_A_Mam|LINE|RTE-X -107528 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 108-9 chr2 114285720 114286015 + 0.571429 NA Intergenic L3|LINE|CR1 -156774 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 135.214-4 chr2 63565633 63566013 + 0.571429 NA intron (NR_148705, intron 1 of 16) L2a|LINE|L2 22654 NR_148705 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 172.286-3 chr4 30368179 30368754 + 0.571429 NA Intergenic Intergenic -351903 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 168-3 chr7 18332952 18333349 + 0.571429 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 43058 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 117.714-5 chr3 129303904 129304174 + 0.571429 NA intron (NM_001370344, intron 6 of 6) AluJo|SINE|Alu -12232 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 155.143-3 chr22 28942664 28943088 + 0.571429 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 25487 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 169 chr14 27267864 27268287 + 0.571429 NA Intergenic L1ME3C|LINE|L1 -344513 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 147.143-2 chr12 1855728 1856132 + 0.571429 NA intron (NM_172364, intron 22 of 37).2 intron (NM_172364, intron 22 of 37).2 35365 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 148-2 chr15 36312819 36313206 + 0.571429 NA Intergenic Intergenic -266614 NM_001321757 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 102.786-4 chr16 59863535 59863806 + 0.571429 NA intron (NR_110917, intron 1 of 3) MER41A|LTR|ERV1 8317 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 97.2857-4 chr3 197108846 197109187 + 0.571429 NA intron (NM_001366216, intron 12 of 23) L1M4|LINE|L1 74856 NM_001366222 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 137-3 chr7 18946327 18946881 + 0.571429 NA intron (NM_058176, intron 22 of 22) L1M5|LINE|L1 171032 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 164.571 chr1 211980706 211981248 + 0.571429 NA intron (NM_015434, intron 10 of 19) intron (NM_015434, intron 10 of 19) -54576 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 131.857-4 chr18 42885770 42886018 + 0.571429 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 229791 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 98.643-2 chr12 42649710 42650046 + 0.571429 NA intron (NR_135027, intron 2 of 4) intron (NR_135027, intron 2 of 4) 3295 NR_135026 105369738 Hs.569161 NR_135026 ENSG00000257164 LINC02451 - long intergenic non-protein coding RNA 2451 ncRNA 122.786-8 chr4 88268785 88269094 + 0.571429 NA intron (NM_152542, intron 3 of 6) intron (NM_152542, intron 3 of 6) 15622 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 144-6 chr3 117085411 117085813 + 0.571429 NA Intergenic Intergenic 164181 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 107.5-2 chr20 4888456 4888708 + 0.571429 NA intron (NM_005116, intron 6 of 16) intron (NM_005116, intron 6 of 16) -64974 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 108.5 chr2 236323404 236323763 + 0.571429 NA TTS (NM_024726) TTS (NM_024726) -59238 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 100.857-6 chr11 126281603 126281865 + 0.571429 NA Intergenic U13|snRNA|snRNA -1353 NM_001318777 114609 Hs.537126 NM_052887 ENSG00000150455 TIRAP BACTS1|Mal|MyD88-2|wyatt TIR domain containing adaptor protein protein-coding 124.286-5 chr17 62656774 62657180 + 0.571429 NA intron (NM_006039, intron 1 of 29) intron (NM_006039, intron 1 of 29) 29307 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 163.428 chr1 44370505 44370981 + 0.571429 NA Intergenic AluJr|SINE|Alu -15464 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 126.714-4 chr22 42682629 42682921 + 0.571429 NA Intergenic LTR50|LTR|ERVL -33383 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 145.429-2 chr22 25973462 25973882 + 0.571429 NA intron (NM_001318245, intron 39 of 43) MER3|DNA|hAT-Charlie -195790 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 216.357 chr12 6047653 6048341 + 0.571429 NA intron (NM_000552, intron 16 of 51) L1ME3E|LINE|L1 -7814 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 145 chr17 57850138 57850654 + 0.571429 NA promoter-TSS (NM_016070) promoter-TSS (NM_016070) -352 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 146.429-3 chr22 28332173 28332672 + 0.571429 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -127447 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 98.8571-6 chr8 105602339 105602581 + 0.571429 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 282917 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 132.857-3 chr4 85796603 85797020 + 0.571429 NA intron (NM_001346093, intron 1 of 6) LTR41|LTR|ERVL 18013 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 140-4 chr2 111901169 111901603 + 0.571429 NA intron (NM_006343, intron 1 of 18) intron (NM_006343, intron 1 of 18) 2779 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 136.786-2 chr1 151089138 151089559 + 0.571429 NA intron (NM_001323907, intron 3 of 7) intron (NM_001323907, intron 3 of 7) 18587 NM_001323910 126626 Hs.15671 NM_144618 ENSG00000143458 GABPB2 GABPB-2 GA binding protein transcription factor subunit beta 2 protein-coding 138.429-6 chr5 38254248 38254554 + 0.571429 NA Intergenic Intergenic -4158 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 108-15 chr4 30306111 30306374 + 0.571429 NA Intergenic Intergenic -414127 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 182.572-2 chr2 121461396 121461912 + 0.571429 NA intron (NM_015282, intron 10 of 38) intron (NM_015282, intron 10 of 38) -69226 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 134.357-4 chr9 89904759 89905217 + 0.571429 NA Intergenic L1ME3G|LINE|L1 -64428 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 108.286-5 chr10 30231433 30231806 + 0.571429 NA non-coding (NR_120653, exon 3 of 3) non-coding (NR_120653, exon 3 of 3) 19767 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 107.143-18 chr7 77197026 77197643 + 0.571429 NA intron (NM_006682, intron 1 of 1) MIRb|SINE|MIR 2485 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 98.7858-6 chr7 114106603 114106893 + 0.571429 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 20421 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 125.714-3 chr2 224336222 224336465 + 0.571429 NA Intergenic Intergenic 65651 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 133.357-2 chr17 64223493 64223840 + 0.571429 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 7068 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 164.643 chr13 100487164 100487596 + 0.571429 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) -6365 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 132-9 chr7 7260443 7260786 + 0.571429 NA intron (NR_108073, intron 2 of 3) intron (NR_108073, intron 2 of 3) 5460 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 106.072-2 chr2 145800810 145801082 + 0.571429 NA Intergenic Intergenic -786111 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 176.714-2 chr14 71649291 71649704 + 0.571429 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 63199 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 145.714-5 chr4 28613210 28613614 + 0.571429 NA Intergenic Intergenic -206170 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 136.071-4 chr14 47334216 47334482 + 0.571429 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 8897 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 113.714-3 chr12 72692710 72693098 + 0.571429 NA Intergenic Intergenic -419395 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 102.857-8 chr4 33931897 33932166 + 0.571429 NA intron (NR_125902, intron 4 of 4) intron (NR_125902, intron 4 of 4) 107862 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 138-6 chr8 125221373 125221801 + 0.571429 NA intron (NM_001349486, intron 5 of 7) Tigger4b|DNA|TcMar-Tigger 129727 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 115.429-9 chr8 134134218 134134665 + 0.571429 NA Intergenic Intergenic 247945 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 170.286-2 chr13 42783596 42784158 + 0.571429 NA intron (NM_182508, intron 1 of 3) intron (NM_182508, intron 1 of 3) 2293 NM_001318932 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 143.143-5 chr8 130182912 130183267 + 0.571429 NA intron (NM_001362925, intron 7 of 29) HAL1ME|LINE|L1 -98321 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 118.429-2 chr3 61515208 61515612 + 0.571429 NA Intergenic Intergenic -46161 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 97.7143-6 chr18 2988996 2989354 + 0.571429 NA intron (NM_014646, intron 1 of 19) MIRb|SINE|MIR 22772 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 154.714-2 chr18 3808193 3808819 + 0.571429 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 36852 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 183.929 chr22 19813739 19814447 + 0.571429 NA intron (NM_053004, intron 4 of 7) L1MD3|LINE|L1 40781 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 175.714-3 chr15 69191379 69191715 + 0.571429 NA intron (NM_001324093, intron 2 of 5) MER68|LTR|ERVL 30912 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 100-4 chr21 20908964 20909166 + 0.571429 NA Intergenic MIRb|SINE|MIR -89344 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 97.1429 chr15 44580275 44580504 + 0.571429 NA intron (NM_025137, intron 30 of 39) Tigger3c|DNA|TcMar-Tigger 43242 NM_003758 8669 Hs.404056 NM_003758 ENSG00000104131 EIF3J EIF3S1|eIF3-alpha|eIF3-p35 eukaryotic translation initiation factor 3 subunit J protein-coding 103.143-6 chr15 60494264 60494668 + 0.571429 NA 3' UTR (NM_002943, exon 11 of 11) 3' UTR (NM_002943, exon 11 of 11) 15288 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 107.143-4 chr12 97733466 97733699 + 0.571429 NA intron (NR_077240, intron 1 of 2) intron (NR_077240, intron 1 of 2) 20016 NR_077241 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 107.143-6 chr14 68526238 68526565 + 0.571429 NA intron (NM_001321818, intron 10 of 10) Tigger3c|DNA|TcMar-Tigger 102386 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 143.143-6 chr9 2909011 2909389 + 0.571429 NA Intergenic Intergenic -65105 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 141.571 chr14 61981244 61981645 + 0.571429 NA intron (NM_001367657, intron 3 of 6) L1MC5a|LINE|L1 53749 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 108.5-6 chr7 90753483 90753961 + 0.571429 NA intron (NM_012395, intron 3 of 13) L1PA16|LINE|L1 43906 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 129.429-3 chr7 71282245 71282700 + 0.571429 NA intron (NM_022479, intron 1 of 10) L2a|LINE|L2 -25202 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 114.143 chr15 61197498 61197747 + 0.571429 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 31680 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 124.428 chr2 196487337 196487616 + 0.571429 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 105507 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 108.857-7 chr6 50410324 50410666 + 0.571429 NA Intergenic Intergenic -303049 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 104.143-8 chr2 188373436 188373736 + 0.571429 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 76094 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 161.143 chr1 19976058 19976441 + 0.571429 NA intron (NM_001161727, intron 5 of 5) MLT1L|LTR|ERVL-MaLR 3410 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 129.286 chr10 60497101 60497718 + 0.571429 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 75547 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 126.857-15 chr8 130260160 130260425 + 0.571429 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 36241 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 174.429-2 chr16 76586732 76587099 + 0.571429 NA Intergenic Intergenic -48083 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 119-4 chr3 133017960 133018301 + 0.571429 NA Intergenic MER6A|DNA|TcMar-Tigger -20158 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 128.857-5 chr4 150920783 150921135 + 0.571429 NA intron (NM_001367550, intron 5 of 56) intron (NM_001367550, intron 5 of 56) 94308 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 104.786-5 chr15 85975635 85976086 + 0.571429 NA Intergenic L1ME5|LINE|L1 -103760 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 111.714-6 chr2 30418532 30418920 + 0.571429 NA Intergenic L1MA8|LINE|L1 -28520 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 176.786 chr11 101890111 101890622 + 0.571429 NA TTS (NM_178127) TTS (NM_178127) -24644 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 140.286-3 chr7 66338252 66338625 + 0.571429 NA intron (NM_003596, intron 3 of 5) L1M1|LINE|L1 61970 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 101.5-2 chr12 120909942 120910155 + 0.571429 NA Intergenic L1MC2|LINE|L1 5353 NR_131215 105500240 Hs.742757 NR_131215 XLOC_009911 - uncharacterized LOC105500240 ncRNA 119.714 chr1 66019982 66020368 + 0.571429 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 27559 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 132.857-5 chr5 45374287 45374585 + 0.571429 NA intron (NM_021072, intron 4 of 7) L1PREC2|LINE|L1 321944 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 146.786-5 chr21 41786634 41786972 + 0.571429 NA Intergenic Intergenic -19751 NM_020639 54101 Hs.517310 NM_020639 ENSG00000183421 RIPK4 ANKK2|ANKRD3|CHANDS|DIK|NKRD3|PKK|PPS2|RIP4 receptor interacting serine/threonine kinase 4 protein-coding 120.143-7 chr13 106197080 106197406 + 0.571429 NA Intergenic Intergenic -179321 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 100.714-8 chr2 137392362 137392670 + 0.571429 NA intron (NM_001316349, intron 12 of 27) L1MA4A|LINE|L1 535416 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 129.143-6 chr4 59449055 59449432 + 0.571429 NA Intergenic Intergenic 435670 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 113.357-7 chr5 139556190 139556642 + 0.571429 NA Intergenic AluSz6|SINE|Alu -4750 NM_181838 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 175 chr12 42503350 42503747 + 0.571429 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -19538 NM_001144882 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 167.786-3 chr3 36125799 36126114 + 0.571429 NA Intergenic L1M1|LINE|L1 -254531 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 114.214-4 chr2 64048929 64049128 + 0.571429 NA Intergenic Intergenic -29600 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 129.072 chr15 41930522 41930958 + 0.571429 NA intron (NM_139265, intron 3 of 5) intron (NM_139265, intron 3 of 5) 9323 NR_120332 101928363 Hs.680195 NR_120332 EHD4-AS1 - EHD4 antisense RNA 1 ncRNA 112.5-5 chr20 4505456 4505652 + 0.571429 NA Intergenic MLT1J2|LTR|ERVL-MaLR -180902 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 158.357-5 chr5 42886038 42886520 + 0.571429 NA Intergenic L2a|LINE|L2 -74203 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 195.072 chr6 121457964 121458335 + 0.571429 NA Intergenic Intergenic 22503 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 116.786-5 chr19 28549450 28549663 + 0.571429 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -57132 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 111-6 chr3 99634040 99634341 + 0.571429 NA Intergenic Intergenic -4404 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 132.786 chr1 147472159 147472610 + 0.571429 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 45491 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 105.286-3 chr5 22376425 22376662 + 0.571429 NA intron (NM_001364104, intron 2 of 13) AluJb|SINE|Alu -162693 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 122.786-4 chr2 4780721 4781028 + 0.571429 NA Intergenic FAM|SINE|Alu -124652 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 163.357 chr10 107174620 107174990 + 0.571429 NA Intergenic L1ME3|LINE|L1 -10099 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 190.571 chr17 60055842 60056315 + 0.571429 NA intron (NM_022070, intron 13 of 19) intron (NM_022070, intron 13 of 19) -12973 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 114.714-2 chr20 50492625 50492908 + 0.571429 NA Intergenic AluSq|SINE|Alu -17555 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 103-3 chr13 64806973 64807210 + 0.571429 NA Intergenic Intergenic -731080 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 136.286-8 chr3 121494033 121494271 + 0.571429 NA intron (NM_199420, intron 14 of 29) intron (NM_199420, intron 14 of 29) 51836 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 193.786 chr8 123009665 123010220 + 0.571429 NA Intergenic L2b|LINE|L2 15830 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 110.786-4 chr6 51500262 51500608 + 0.571429 NA Intergenic Intergenic -121435 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 109-8 chr3 166005274 166005857 + 0.571429 NA Intergenic LTR56|LTR|ERV1 -168142 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 213.929 chr11 106628327 106628988 + 0.571429 NA Intergenic L1ME2z|LINE|L1 377250 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 107.214 chr17 57167918 57168316 + 0.571429 NA Intergenic L1MC1|LINE|L1 72628 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 124.286-8 chr4 23373744 23374305 + 0.571429 NA Intergenic Intergenic 507268 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 105.429-12 chr6 8323508 8323814 + 0.571429 NA Intergenic Intergenic 111884 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 132.143 chr1 101367642 101368068 + 0.571429 NA intron (NR_126402, intron 4 of 4) intron (NR_126402, intron 4 of 4) 44018 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 149.572 chr20 52961704 52962212 + 0.571429 NA Intergenic Intergenic -10400 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 108.857-8 chr6 117714452 117714728 + 0.571429 NA Intergenic Intergenic 39121 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 133.429-5 chr7 41519325 41519586 + 0.571429 NA Intergenic AluJo|SINE|Alu -174464 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 155.786-2 chr17 49894007 49894513 + 0.571429 NA Intergenic AluJr|SINE|Alu -46243 NM_001077505 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 114.786-5 chr4 32121302 32121662 + 0.571429 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -99060 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 128.857-2 chr18 5995687 5996063 + 0.571429 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -99921 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 108.286-2 chr1 22918451 22918833 + 0.571429 NA 3' UTR (NM_001309193, exon 17 of 17) 3' UTR (NM_001309193, exon 17 of 17) 54224 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 206.929 chr11 84477110 84477477 + 0.571429 NA intron (NM_001142699, intron 7 of 27) AluSp|SINE|Alu -159954 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 110.786-3 chr4 33124843 33125115 + 0.571429 NA Intergenic Intergenic 773941 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 108.429-2 chr3 192772045 192772407 + 0.571429 NA Intergenic Intergenic -44685 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 106-3 chr2 57955512 57955782 + 0.571429 NA intron (NM_001288838, intron 1 of 15) L1PA10|LINE|L1 47996 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 128.214-3 chr15 69492432 69492796 + 0.571429 NA Intergenic L1ME3Cz|LINE|L1 39796 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 102.571-2 chr16 53264507 53264798 + 0.571429 NA intron (NM_001352157, intron 19 of 37) L2a|LINE|L2 56201 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 97.2856 chr4 68005790 68006080 + 0.571429 NA Intergenic AluSc|SINE|Alu -8496 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 150.571 chr4 154596418 154596802 + 0.571429 NA Intergenic Intergenic -5868 NM_021871 2243 Hs.351593 NM_000508 ENSG00000171560 FGA Fib2 fibrinogen alpha chain protein-coding 98.4287 chr4 113800066 113800294 + 0.571429 NA Intergenic MSTD|LTR|ERVL-MaLR -38253 NM_172115 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 114.5-3 chr9 74761096 74761358 + 0.571429 NA intron (NM_017662, intron 27 of 38) L1M4|LINE|L1 126120 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 135.643 chr7 31020230 31020542 + 0.571429 NA Intergenic Intergenic -31922 NM_001199636 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 118.286-5 chr5 42490352 42490603 + 0.571429 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -57566 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 167.072 chr4 41824612 41824961 + 0.571429 NA Intergenic MLT1J|LTR|ERVL-MaLR 57825 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 98.8572-4 chr5 24675023 24675375 + 0.571429 NA Intergenic Intergenic -30221 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 178.071 chr1 185208679 185209024 + 0.571429 NA intron (NM_017673, intron 13 of 18) MER65D|LTR|ERV1 51684 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 130 chr11 23180317 23180647 + 0.571429 NA Intergenic Intergenic 238708 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 148-5 chr2 6769693 6770032 + 0.571429 NA intron (NR_038369, intron 1 of 5) (GT)n|Simple_repeat|Simple_repeat 449 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 103.429-4 chr11 130303870 130304138 + 0.571429 NA intron (NR_163265, intron 1 of 7) intron (NR_163265, intron 1 of 7) 10708 NM_001301099 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 192.571-2 chr21 24809865 24810586 + 0.571429 NA Intergenic Intergenic -30325 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 157.572 chr2 174230110 174230515 + 0.571429 NA intron (NM_001011708, intron 1 of 9) L1MC5|LINE|L1 18220 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 128.429 chr1 219470753 219471347 + 0.571429 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 86274 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 105.643-17 chr8 130465155 130465502 + 0.571429 NA Intergenic MER45A|DNA|hAT-Tip100 -21654 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 186.429-2 chr8 19884081 19884464 + 0.571429 NA Intergenic L3|LINE|CR1 -54981 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 98.6429-6 chr9 35513661 35514115 + 0.571429 NA intron (NM_001330740, intron 1 of 10) L1ME4b|LINE|L1 23777 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 233.5 chr8 98909408 98910329 + 0.571429 NA intron (NM_001256312, intron 1 of 12) L1MB8|LINE|L1 32742 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 123.571-2 chr5 71879834 71880073 + 0.571429 NA Intergenic AluSz6|SINE|Alu 160678 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 144.786 chr1 109209573 109209926 + 0.571429 NA Intergenic L2c|LINE|L2 -4144 NM_001330669 6301 Hs.531176 NM_006513 ENSG00000031698 SARS NEDMAS|SERRS|SERS seryl-tRNA synthetase protein-coding 142.286-5 chr5 96512250 96512593 + 0.571429 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -79173 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 173.857-2 chr12 45040648 45041215 + 0.571429 NA intron (NM_001004329, intron 1 of 3) intron (NM_001004329, intron 1 of 3) 10168 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 153.429 chr14 75739115 75739486 + 0.571429 NA intron (NM_015072, intron 15 of 31) intron (NM_015072, intron 15 of 31) 78054 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 158-3 chr22 34737696 34738054 + 0.571429 NA Intergenic MLT1B|LTR|ERVL-MaLR 260041 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 97.8572-2 chr14 20341929 20342196 + 0.571429 NA Intergenic L1M5|LINE|L1 1349 NR_002312 85495 Hs.613102 NR_002312 ENSG00000277209 RPPH1 H1RNA|RPPH1-1 ribonuclease P RNA component H1 ncRNA 165.929 chr2 177214660 177215131 + 0.571429 NA intron (NM_194247, intron 1 of 10) intron (NM_194247, intron 1 of 10) 2101 NR_138470 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 155.714 chr14 71282487 71283003 + 0.571429 NA Intergenic L3|LINE|CR1 -37731 NM_001354287 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 117.143-5 chr17 62568997 62569423 + 0.571429 NA intron (NM_001284363, intron 9 of 19) AluSx|SINE|Alu -58460 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 103.714-6 chr14 60838173 60838466 + 0.571429 NA intron (NM_002431, intron 6 of 7) AluJo|SINE|Alu 103558 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 104.357-3 chr12 115680924 115681160 + 0.571429 NA Intergenic MLT1I|LTR|ERVL-MaLR 467612 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 106.286-4 chr3 194064735 194065120 + 0.571429 NA intron (NR_136181, intron 1 of 3) intron (NR_136181, intron 1 of 3) 4602 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 99.4286 chr1 42410190 42410432 + 0.571429 NA intron (NM_173642, intron 4 of 4) L2b|LINE|L2 29519 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 124.429-2 chr16 85171356 85171704 + 0.571429 NA Intergenic Intergenic 34380 NR_033984 400548 Hs.592054 NR_033984 ENSG00000278214 LINC02139 - long intergenic non-protein coding RNA 2139 ncRNA 201.857-3 chr6 154183109 154183633 + 0.571429 NA intron (NM_015553, intron 10 of 11) L1M5|LINE|L1 93609 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 115.143-2 chr14 39977868 39978164 + 0.571429 NA Intergenic Intergenic -545516 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 101.5-9 chr6 140706995 140707179 + 0.571429 NA Intergenic Tigger1|DNA|TcMar-Tigger 23273 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 143.428 chr7 3600129 3600444 + 0.571429 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 299034 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 132.072-2 chr22 41468653 41469027 + 0.571429 NA promoter-TSS (NM_001098) promoter-TSS (NM_001098) -148 NM_032758 84844 Hs.474980 NM_032758 ENSG00000100410 PHF5A INI|Rds3|SAP14b|SF3B7|SF3b14b|bK223H9.2 PHD finger protein 5A protein-coding 103.714-12 chr22 26771490 26771843 + 0.571429 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) -88545 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 143.429-3 chr10 64197529 64197881 + 0.571429 NA Intergenic Intergenic -627823 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 112.929-6 chr3 25225833 25226095 + 0.571429 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -114838 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 105.857-5 chr12 25223226 25223472 + 0.571429 NA intron (NM_001369786, intron 4 of 5) intron (NM_001369786, intron 4 of 5) 27580 NM_001369787 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 115.429-3 chr11 115808410 115808932 + 0.571429 NA Intergenic LTR8|LTR|ERV1 -48471 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 115-5 chr5 115715215 115715484 + 0.571429 NA Intergenic L2c|LINE|L2 -42697 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 162.357 chr6 107452066 107452476 + 0.571429 NA intron (NM_020381, intron 1 of 7) AluSx1|SINE|Alu 7293 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 132-8 chr6 57037392 57037742 + 0.571429 NA Intergenic AluSc|SINE|Alu -8965 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 146.571-3 chr2 31061370 31061868 + 0.571429 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 68021 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 105.071-2 chr10 100766915 100767189 + 0.571429 NA intron (NM_003988, intron 3 of 10) intron (NM_003988, intron 3 of 10) 21341 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 96.9286-3 chr2 213179431 213179742 + 0.571429 NA Intergenic Intergenic -11876 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 143.286-2 chr11 93711277 93711675 + 0.571429 NA intron (NM_033395, intron 18 of 29) L1MA3|LINE|L1 -10038 NR_002569 619383 Hs.660668 NR_002569 ENSG00000254911 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 123.5-4 chr2 14694210 14694479 + 0.571429 NA Intergenic Intergenic 61627 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 119.428-2 chr20 56981746 56982122 + 0.571429 NA Intergenic AluSx|SINE|Alu -231762 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 134.572-3 chr19 10735966 10736395 + 0.571429 NA intron (NM_001005362, intron 1 of 19) AluSx1|SINE|Alu 17776 NR_030368 693223 NR_030368 ENSG00000207972 MIR638 MIRN638|hsa-mir-638 microRNA 638 ncRNA 134.143-4 chr4 35161918 35162256 + 0.571429 NA Intergenic Intergenic -892340 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 128.571-9 chr6 122685722 122686023 + 0.571429 NA intron (NM_181795, intron 3 of 4) L1MA2|LINE|L1 33143 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 120.571-8 chr8 127710683 127710949 + 0.571429 NA intron (NR_117102, intron 2 of 3) intron (NR_117102, intron 2 of 3) 23151 NR_117101 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 156.857-5 chr4 52274749 52275291 + 0.571429 NA Intergenic L1PREC2|LINE|L1 223716 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 129.643-3 chr16 61438471 61438808 + 0.571429 NA Intergenic Intergenic -382873 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 111.214-6 chr3 17078360 17078832 + 0.571429 NA intron (NM_015184, intron 5 of 5) intron (NM_015184, intron 5 of 5) 145400 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 102.643-4 chr2 80814321 80814674 + 0.571429 NA Intergenic Intergenic 501118 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 154.357 chr13 96512073 96512589 + 0.571429 NA intron (NM_153456, intron 1 of 1) L1M5|LINE|L1 85102 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 136.071-10 chr8 74383478 74383813 + 0.571429 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 33242 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 99.0001 chr1 16927401 16927652 + 0.571429 NA intron (NM_014675, intron 3 of 36) intron (NM_014675, intron 3 of 36) 5595 NM_014675 9696 Hs.309403 NM_014675 ENSG00000058453 CROCC ROLT|TAX1BP2 ciliary rootlet coiled-coil, rootletin protein-coding 219.072 chr12 29496163 29496671 + 0.571429 NA intron (NM_001353179, intron 2 of 25) intron (NM_001353179, intron 2 of 25) 3276 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 123.714-3 chr3 58231491 58231773 + 0.571429 NA Intergenic L3|LINE|CR1 -5870 NM_020676 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 97.8571-5 chr17 35017327 35017607 + 0.571429 NA intron (NR_037714, intron 5 of 6) intron (NR_037714, intron 5 of 6) 36955 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 100.714-4 chr13 73778897 73779248 + 0.571429 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 214828 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 154.072 chr2 214064810 214065229 + 0.571429 NA intron (NR_047660, intron 12 of 14) MIR|SINE|MIR 306952 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 102.786-2 chr12 4282840 4283172 + 0.571429 NA intron (NM_001759, intron 3 of 4) intron (NM_001759, intron 3 of 4) -6822 NR_125790 103752584 Hs.577711 NR_125790 ENSG00000255920 CCND2-AS1 CCND2-AS2 CCND2 antisense RNA 1 ncRNA 101.286-8 chr6 45011763 45012060 + 0.571429 NA intron (NM_001261823, intron 4 of 9) L1MB8|LINE|L1 185859 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 112.286-5 chr17 43090854 43091309 + 0.571429 NA intron (NM_007299, intron 10 of 21) intron (NM_007299, intron 10 of 21) 33034 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 97.5715 chr1 73316723 73317015 + 0.571429 NA intron (NR_110676, intron 3 of 3) intron (NR_110676, intron 3 of 3) 10699 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 149.714-2 chr12 120815523 120816025 + 0.571429 NA intron (NM_139015, intron 1 of 10) AluSx1|SINE|Alu 88584 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 155-5 chr3 190446886 190447392 + 0.571429 NA intron (NM_207316, intron 2 of 4) intron (NM_207316, intron 2 of 4) 2737 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 106.143-10 chr6 39660470 39660766 + 0.571429 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 64790 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 125 chr1 65774324 65774652 + 0.571429 NA Intergenic L1ME4b|LINE|L1 -18022 NM_001037341 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 159.428 chr12 14055365 14055859 + 0.571429 NA Intergenic Intergenic -75256 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 117.857-4 chr10 17277639 17277948 + 0.571429 NA Intergenic Intergenic -47808 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 138.429-5 chr3 141167127 141167516 + 0.571429 NA Intergenic L1ME1|LINE|L1 -64504 NM_001282728 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 109.286-4 chr3 88792900 88793288 + 0.571429 NA Intergenic L1MA2|LINE|L1 -314527 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 138.571-3 chr13 67393106 67393512 + 0.571429 NA Intergenic Intergenic 20922 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 103.572 chr3 165321524 165321732 + 0.571429 NA intron (NR_125764, intron 1 of 5) L1MA3|LINE|L1 114668 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 139.5-3 chr4 10413667 10414060 + 0.571429 NA Intergenic Intergenic 43563 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 118.429-5 chr7 75758044 75758430 + 0.571429 NA Intergenic MER1B|DNA|hAT-Charlie -19296 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 144.857-5 chr8 80484257 80484544 + 0.571429 NA Intergenic Intergenic -1193 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 115.429-5 chr3 159079508 159079844 + 0.571429 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 10357 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 141.5-2 chr2 95220544 95221008 + 0.571429 NA Intergenic Intergenic -53673 NM_001321070 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 120.214-3 chr10 54505397 54505786 + 0.571429 NA intron (NR_134503, intron 1 of 5) L1PA7|LINE|L1 19361 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 128.5-3 chr7 24293968 24294400 + 0.571429 NA Intergenic Intergenic 9994 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 126.929-2 chr16 2261687 2262066 + 0.571429 NA intron (NM_006711, intron 6 of 7) PABL_A|LTR|ERV1 5461 NM_001286625 10921 Hs.355643 NM_006711 ENSG00000205937 RNPS1 E5.1 RNA binding protein with serine rich domain 1 protein-coding 104.286-3 chr14 57527177 57527429 + 0.571429 NA Intergenic L1PB1|LINE|L1 -33446 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 128.429-2 chr14 52547124 52547512 + 0.571429 NA intron (NM_001160047, intron 1 of 20) intron (NM_001160047, intron 1 of 20) 5187 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 128.143-7 chr9 38451210 38451541 + 0.571429 NA Intergenic L1MA6|LINE|L1 -26921 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 135.214-3 chr11 66624125 66624515 + 0.571429 NA exon (NM_006328, exon 2 of 3) exon (NM_006328, exon 2 of 3) 7690 NM_001198836 10432 Hs.533712 NM_006328 ENSG00000239306 RBM14 COAA|PSP2|SIP|SYTIP1|TMEM137 RNA binding motif protein 14 protein-coding 127.643 chr15 77249115 77249480 + 0.571429 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) -23893 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 121-9 chr7 11838614 11839236 + 0.571429 NA Intergenic L1M1|LINE|L1 -6727 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 153.643 chr10 114010038 114010616 + 0.571429 NA Intergenic L1ME4a|LINE|L1 -33539 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 111.143-4 chr2 165220164 165220515 + 0.571429 NA Intergenic Intergenic -16289 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 132.571 chr11 98783994 98784282 + 0.571429 NA Intergenic Intergenic -236811 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 152.143-5 chr7 111369275 111369602 + 0.571429 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 192853 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 177.143-2 chr5 33552632 33553037 + 0.571429 NA intron (NM_001324512, intron 18 of 21) L1PA13|LINE|L1 112058 NR_047677 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 120.286 chr16 59847703 59848077 + 0.571429 NA Intergenic Intergenic -7463 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 160.071-2 chr8 81511531 81511831 + 0.571429 NA Intergenic L1ME1|LINE|L1 19709 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 124.214-2 chr14 39425247 39425541 + 0.571429 NA intron (NM_203301, intron 1 of 3) intron (NM_203301, intron 1 of 3) 7106 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 103.5-3 chr11 21763139 21763719 + 0.571429 NA Intergenic Intergenic -429656 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 110.857-9 chr2 179448877 179449310 + 0.571429 NA intron (NR_148054, intron 5 of 8) intron (NR_148054, intron 5 of 8) 113495 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 131.929-2 chr20 43648483 43648888 + 0.571429 NA Intergenic AluSz|SINE|Alu -18334 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 140.214-3 chr3 167562548 167562847 + 0.571429 NA intron (NM_001348951, intron 8 of 18) MIR|SINE|MIR -88565 NM_006217 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 100.714-10 chr21 14390784 14391032 + 0.571429 NA Intergenic L1MEg|LINE|L1 -7762 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 121.071-6 chr7 39478305 39478615 + 0.571429 NA Intergenic L1PA7|LINE|L1 -72114 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 113.286-6 chr17 74140746 74141108 + 0.571429 NA Intergenic AluSx|SINE|Alu -62751 NM_000999 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 129.929-4 chr9 107982589 107982880 + 0.571429 NA Intergenic Intergenic -492965 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 196.572 chr4 149218309 149218754 + 0.571429 NA intron (NR_125887, intron 9 of 12) L1PA14|LINE|L1 64236 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 136.714-4 chr12 88902942 88903305 + 0.571429 NA Intergenic Intergenic 116569 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 107.857-3 chr5 161783461 161783855 + 0.571429 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -63533 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 109.714-3 chr10 26025767 26026097 + 0.571429 NA intron (NM_017433, intron 9 of 34) intron (NM_017433, intron 9 of 34) 91703 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 158.571-5 chr8 98682128 98682637 + 0.571429 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 143289 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 130.214-2 chr11 64869335 64869722 + 0.571429 NA intron (NM_006795, intron 2 of 4) MIRb|SINE|MIR 9081 NR_162101 113218486 NR_162101 MIR10392 - microRNA 10392 ncRNA 134.786-9 chr8 96276138 96276559 + 0.571429 NA intron (NM_001290225, intron 2 of 10) intron (NM_001290225, intron 2 of 10) 14446 NM_001290225 9791 Hs.292579 NM_014754 ENSG00000156471 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 105.214-11 chr3 28432156 28432767 + 0.571429 NA intron (NM_001040432, intron 3 of 9) intron (NM_001040432, intron 3 of 9) 83312 NM_001324170 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 158-2 chr2 212651189 212651738 + 0.571429 NA Intergenic Charlie21a|DNA|hAT-Charlie -112661 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 121.572 chr12 63148250 63148682 + 0.571429 NA intron (NM_000706, intron 1 of 1) intron (NM_000706, intron 1 of 1) 4344 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 158.143-2 chr3 180178813 180179266 + 0.571429 NA Intergenic Intergenic -142102 NM_001349399 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 117.143-6 chr18 14085120 14085386 + 0.571429 NA intron (NR_033354, intron 1 of 5) intron (NR_033354, intron 1 of 5) 47182 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 170.857 chr1 28436420 28437240 + 0.571429 NA intron (NM_001350160, intron 3 of 14) intron (NM_001350160, intron 3 of 14) -1320 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 141.714-2 chr13 73626511 73626915 + 0.571429 NA Intergenic AluY|SINE|Alu 62469 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 123.143-6 chr3 35494858 35495199 + 0.571429 NA Intergenic AluJr|SINE|Alu -101005 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 146.571-2 chr14 64275173 64275562 + 0.571429 NA intron (NR_073497, intron 1 of 6) L1MA3|LINE|L1 7708 NM_001214902 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 107.714-17 chr8 127778137 127778370 + 0.571429 NA Intergenic L1MC5|LINE|L1 -16280 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 127.429 chr10 72776983 72777634 + 0.571429 NA intron (NR_073062, intron 3 of 9) L1MA4|LINE|L1 56279 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 102.286-11 chr7 27575516 27575754 + 0.571429 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -40339 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 155.357-3 chr14 51169271 51169782 + 0.571429 NA Intergenic Intergenic -70721 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 104.643-7 chr8 106982814 106983123 + 0.571429 NA Intergenic Intergenic -212724 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 98.8572-3 chr19 10212984 10213368 + 0.571429 NA Intergenic L1MC4|LINE|L1 -17237 NR_036206 100422925 NR_036206 ENSG00000264266 MIR4322 - microRNA 4322 ncRNA 143.929-3 chr8 46484881 46485225 + 0.571429 NA Intergenic HERVK3-int|LTR|ERVK 132590 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 140.286 chr4 108165195 108165695 + 0.571429 NA intron (NM_001130713, intron 1 of 10) intron (NM_001130713, intron 1 of 10) 1352 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 116 chr10 116428371 116428714 + 0.571429 NA intron (NM_001011709, intron 1 of 11) intron (NM_001011709, intron 1 of 11) 695 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 110.143-3 chr1 164438791 164439257 + 0.571429 NA Intergenic HAL1|LINE|L1 -120336 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 119.714-6 chr2 71758709 71758982 + 0.571429 NA Intergenic L1MD|LINE|L1 292146 NM_001130986 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 122.571-7 chr7 8470149 8470511 + 0.571429 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 36721 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 128.571-2 chr1 115365983 115366450 + 0.571429 NA non-coding (NR_157569, exon 2 of 2) non-coding (NR_157569, exon 2 of 2) -27980 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 120.214-11 chr7 83098409 83098740 + 0.571429 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 64310 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 129.857-5 chr4 147058997 147059444 + 0.571429 NA Intergenic MLT1A1|LTR|ERVL-MaLR -113334 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 144.571 chr16 9818808 9819218 + 0.571429 NA intron (NM_001134408, intron 10 of 13) L1ME4b|LINE|L1 363054 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 113.428-4 chrX 62932051 62932416 + 0.571429 NA Intergenic MER41-int|LTR|ERV1 419099 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 103.143-7 chr16 27975589 27975922 + 0.571429 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) -87598 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 118.929-5 chr5 34051836 34052165 + 0.571429 NA intron (NR_146599, intron 7 of 11) AluSx1|SINE|Alu -8787 NM_030945 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 156.072 chr1 225377774 225378341 + 0.571429 NA intron (NM_001367479, intron 79 of 85) MamRep1151|LTR?|LTR? 49981 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 115.5-2 chr20 35274277 35274552 + 0.571429 NA exon (NM_006690, exon 9 of 9) exon (NM_006690, exon 9 of 9) 3708 NR_149148 101410538 Hs.356273 NM_001355003 ENSG00000126005 MMP24OS MMP24-AS1 MMP24 opposite strand protein-coding 100.072 chr1 12604129 12604489 + 0.571429 NA intron (NM_004753, intron 1 of 5) intron (NM_004753, intron 1 of 5) -7696 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 97.5001-2 chr2 43472250 43472493 + 0.571429 NA intron (NM_001083953, intron 26 of 37) Tigger16a|DNA|TcMar-Tigger 123603 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 126.857-13 chr7 139919359 139919796 + 0.571429 NA intron (NM_001314028, intron 4 of 12) intron (NM_001314028, intron 4 of 12) 90313 NM_001166253 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 103.714-3 chr1 217805062 217805364 + 0.571429 NA intron (NM_138796, intron 9 of 10) L1MA9|LINE|L1 -20093 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 99.8571-4 chr13 77597992 77598264 + 0.571429 NA intron (NM_003843, intron 12 of 31) AluJo|SINE|Alu 8423 NR_126412 104355296 Hs.667682 NR_126412 ENSG00000224347 SCEL-AS1 - SCEL antisense RNA 1 ncRNA 146.429 chr15 69977829 69978226 + 0.571429 NA Intergenic L1ME3G|LINE|L1 101441 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 102.714-7 chr2 106741073 106741295 + 0.571429 NA Intergenic MER44B|DNA|TcMar-Tigger 144844 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 127.214-3 chr22 28588898 28589164 + 0.571429 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 90834 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 132.072 chr2 135788562 135789009 + 0.571429 NA intron (NM_002299, intron 16 of 16) Tigger4b|DNA|TcMar-Tigger -31406 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 117 chr1 185976776 185977105 + 0.571429 NA intron (NM_031935, intron 15 of 106) intron (NM_031935, intron 15 of 106) 242549 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 100.429-7 chr3 185927058 185927413 + 0.571429 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 10779 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 100.714-16 chr6 88687156 88687407 + 0.571429 NA intron (NM_001286428, intron 11 of 13) L1MC4a|LINE|L1 -147912 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 137.143-3 chr10 43695461 43695908 + 0.571429 NA Intergenic Intergenic -46803 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 156.571 chr14 71103944 71104396 + 0.571429 NA intron (NM_014982, intron 32 of 35) intron (NM_014982, intron 32 of 35) 196711 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 104.143-15 chr9 92339877 92340308 + 0.571429 NA intron (NM_001286969, intron 2 of 6) intron (NM_001286969, intron 2 of 6) 14139 NM_001012267 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 112.714-8 chr3 153325449 153325734 + 0.571429 NA Intergenic L1PA15|LINE|L1 -158904 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 105.214-17 chr9 74149123 74149387 + 0.571429 NA Intergenic 7SK|RNA|RNA -222276 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 97.1429-6 chr9 90373852 90374080 + 0.571429 NA intron (NR_109795, intron 2 of 2) L1M4b|LINE|L1 59523 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 160.429-3 chr22 34851504 34851809 + 0.571429 NA intron (NR_138042, intron 3 of 4) L1MD2|LINE|L1 146260 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 97.5001-3 chr8 60325270 60325495 + 0.571429 NA Intergenic Intergenic -43982 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 121.429-3 chr20 31951013 31951362 + 0.571429 NA intron (NM_030815, intron 1 of 4) L2|LINE|L2 859 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 103-7 chr22 47670594 47670915 + 0.571429 NA intron (NR_122046, intron 2 of 8) intron (NR_122046, intron 2 of 8) 39080 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 118.143-3 chr12 3164053 3164320 + 0.571429 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 86807 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 126.857-7 chr17 28090122 28090429 + 0.571429 NA intron (NM_016231, intron 1 of 10) L1MEc|LINE|L1 47598 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 101.714-3 chr14 86591228 86591633 + 0.571429 NA Intergenic L1PA4|LINE|L1 -314348 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 103.357 chr10 49520863 49521147 + 0.571429 NA intron (NM_001277058, intron 5 of 5) intron (NM_001277058, intron 5 of 5) 3276 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 113.643-2 chr15 52846261 52846642 + 0.571429 NA Intergenic L2b|LINE|L2 -56115 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 111.143-3 chr2 105638884 105639182 + 0.571429 NA Intergenic Tigger13a|DNA|TcMar-Tigger -28474 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 141.286 chr14 20920830 20921261 + 0.571429 NA TTS (NR_033909) TTS (NR_033909) 1704 NR_033909 643332 Hs.730362 NR_033909 ECRP - ribonuclease A family member 2 pseudogene pseudo 122-4 chr13 108976252 108976626 + 0.571429 NA intron (NM_015011, intron 20 of 34) intron (NM_015011, intron 20 of 34) 190864 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 109.072 chr4 97119667 97119966 + 0.571429 NA Intergenic Intergenic -247110 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 182.714 chr4 76061917 76062415 + 0.571429 NA intron (NM_001130017, intron 1 of 9) intron (NM_001130017, intron 1 of 9) -12529 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 113.429-2 chr4 44260221 44260524 + 0.571429 NA intron (NM_198353, intron 1 of 1) L2a|LINE|L2 188437 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 188.572 chr17 76208168 76208690 + 0.571429 NA intron (NM_052916, intron 2 of 18) MIR|SINE|MIR 32064 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 108.714-4 chr2 124291336 124291564 + 0.571429 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 266163 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 101.429-3 chr8 101688495 101688753 + 0.571429 NA 3' UTR (NM_032041, exon 4 of 4) 3' UTR (NM_032041, exon 4 of 4) 102345 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 97.4286 chr10 63236234 63236514 + 0.571429 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 32849 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 143.714-5 chrX 39845859 39846166 + 0.571429 NA Intergenic MER3|DNA|hAT-Charlie 8451 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 210.072 chr4 30265722 30266158 + 0.571429 NA Intergenic Intergenic -454429 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 176.286 chr6 63252067 63252402 + 0.571429 NA Intergenic (AATATAA)n|Simple_repeat|Simple_repeat 67743 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 122 chr1 232412045 232412351 + 0.571429 NA intron (NM_020808, intron 17 of 20) intron (NM_020808, intron 17 of 20) 103410 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 154.571 chr17 57439249 57439667 + 0.571429 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 84139 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 144-5 chr2 140311878 140312450 + 0.571429 NA intron (NM_018557, intron 83 of 90) intron (NM_018557, intron 83 of 90) 274521 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 130.286 chr17 59339253 59339733 + 0.571429 NA intron (NM_001005404, intron 1 of 4) intron (NM_001005404, intron 1 of 4) 7838 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 104.857-2 chr1 242680098 242680354 + 0.571429 NA Intergenic LTR39|LTR|ERV1 -155529 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 108.786-2 chr12 119067775 119068050 + 0.571429 NA intron (NM_194286, intron 1 of 12) MIRb|SINE|MIR 86371 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 150.5-2 chr1 219184129 219184402 + 0.571429 NA intron (NM_001350629, intron 3 of 5) L1MEf|LINE|L1 9296 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 137.571-2 chr8 103904250 103904633 + 0.571429 NA intron (NM_001282881, intron 2 of 20) L1MD2|LINE|L1 85221 NM_001348499 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 178.428 chr14 81596248 81596641 + 0.571429 NA Intergenic Intergenic 26617 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 137.143-8 chr5 81558247 81558613 + 0.571429 NA intron (NM_012446, intron 4 of 16) MLT1A|LTR|ERVL-MaLR -164296 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 138.357-2 chr13 75597693 75598066 + 0.571429 NA intron (NM_006002, intron 7 of 8) intron (NM_006002, intron 7 of 8) -22555 NM_005358 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 121.143-2 chr19 18410830 18411092 + 0.571429 NA Intergenic L2b|LINE|L2 -8437 NM_001009998 170463 Hs.515259 NM_032627 ENSG00000130511 SSBP4 - single stranded DNA binding protein 4 protein-coding 130.857-7 chr6 95074302 95074663 + 0.571429 NA Intergenic FLAM_A|SINE|Alu 502969 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 130.286-4 chr5 64057480 64057809 + 0.571429 NA Intergenic Intergenic -95352 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 117.071 chr12 115746192 115746752 + 0.571429 NA Intergenic Intergenic 402182 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 103.857-6 chr20 55890709 55891024 + 0.571429 NA Intergenic Intergenic 114653 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 118.857-2 chr2 162972859 162973117 + 0.571429 NA Intergenic Intergenic -134221 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 143.072 chr5 11431446 11431726 + 0.571429 NA intron (NM_001288715, intron 2 of 20) MLT1H1|LTR|ERVL-MaLR 157331 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 166.571-2 chr7 15934739 15935245 + 0.571429 NA Intergenic Intergenic 246614 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 203.071 chr1 171247762 171248462 + 0.571429 NA promoter-TSS (NM_001282693) promoter-TSS (NM_001282693) -359 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 100.429-8 chr5 56568298 56568724 + 0.571429 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 37745 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 114.143-9 chr8 125774204 125774443 + 0.571429 NA Intergenic Intergenic 176874 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 101.428-3 chr3 154043663 154043999 + 0.571429 NA intron (NR_037901, intron 2 of 3) L1MEd|LINE|L1 -77172 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 113.857-4 chr2 17697189 17697553 + 0.571429 NA intron (NM_024624, intron 20 of 26) L1MEf|LINE|L1 56439 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 113.5 chr18 8619428 8619686 + 0.571429 NA intron (NM_001025300, intron 1 of 5) intron (NM_001025300, intron 1 of 5) 10112 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 134-10 chr7 51821274 51821589 + 0.571429 NA Intergenic MLT1F2|LTR|ERVL-MaLR -428175 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 209.857-2 chrX 141458398 141459144 + 0.571429 NA Intergenic Intergenic -44078 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 126.286-2 chr15 69896377 69896857 + 0.571429 NA Intergenic MIRb|SINE|MIR 61383 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 106-7 chr22 40529200 40529463 + 0.571429 NA intron (NM_020831, intron 3 of 14) AluSx1|SINE|Alu 4496 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 107.714 chr1 154958467 154958896 + 0.571429 NA 3' UTR (NM_138300, exon 3 of 3) 3' UTR (NM_138300, exon 3 of 3) -2582 NM_001317734 57326 Hs.505806 NM_020524 ENSG00000163346 PBXIP1 HPIP PBX homeobox interacting protein 1 protein-coding 116.929-5 chr6 143844362 143844602 + 0.571429 NA intron (NM_001329953, intron 1 of 10) intron (NM_001329953, intron 1 of 10) 1144 NM_032860 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 106.571-2 chr10 112336991 112337274 + 0.571429 NA intron (NR_028134, intron 9 of 18) MIR|SINE|MIR 19463 NR_028134 390003 Hs.534691 NR_028134 ENSG00000243316 GUCY2GP GUCY2G guanylate cyclase 2G, pseudogene pseudo 108-12 chr3 57210287 57210646 + 0.571429 NA Intergenic Intergenic -10488 NM_003865 8820 Hs.171980 NM_003865 ENSG00000163666 HESX1 ANF|CPHD5|RPX HESX homeobox 1 protein-coding 117.214-5 chr5 137574809 137575096 + 0.571429 NA Intergenic Intergenic 72697 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 113.143-2 chr11 17242429 17242745 + 0.571429 NA Intergenic Intergenic -34127 NM_001352661 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 222.714 chr18 4675299 4675709 + 0.571429 NA Intergenic Intergenic -220197 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 105.786-8 chr8 84525121 84525417 + 0.571429 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 109785 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 136.143-6 chr8 78602215 78602636 + 0.571429 NA 3' UTR (NM_006823, exon 4 of 4) 3' UTR (NM_006823, exon 4 of 4) -43922 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 215.214-2 chr4 89498570 89499019 + 0.571429 NA Intergenic MIRc|SINE|MIR -190994 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 112.572 chr3 131428942 131429201 + 0.571429 NA Intergenic LTR16C|LTR|ERVL 47297 NR_033268 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 108.429-3 chr4 7170924 7171274 + 0.571429 NA Intergenic Intergenic -21439 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 119.571-8 chr9 75465801 75466094 + 0.571429 NA Intergenic Intergenic 377433 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 101.429 chr1 58399278 58399575 + 0.571429 NA Intergenic Intergenic 147300 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 131.429-4 chr13 41606283 41606633 + 0.571429 NA intron (NM_015058, intron 39 of 44) intron (NM_015058, intron 39 of 44) -38063 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 112.214-4 chr3 42928004 42928205 + 0.571429 NA Intergenic Intergenic -8238 NM_001205272 100506243 Hs.720172 NM_015673 ENSG00000240747 KRBOX1 - KRAB box domain containing 1 protein-coding 160.429-2 chr17 13463289 13463726 + 0.571429 NA Intergenic MER63A|DNA|hAT-Blackjack 80139 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 106.5-7 chr20 60589016 60589216 + 0.571429 NA Intergenic Intergenic 24554 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 116.071-4 chr8 120621225 120621771 + 0.571429 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -139755 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 105.929-5 chr2 135911079 135911379 + 0.571429 NA intron (NM_001293312, intron 13 of 14) intron (NM_001293312, intron 13 of 14) -34786 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 100-2 chr10 91411195 91411485 + 0.571429 NA intron (NM_182765, intron 1 of 20) intron (NM_182765, intron 1 of 20) 1055 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 188.786 chr1 164723085 164723488 + 0.571429 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 51355 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 115.286-5 chr2 224018977 224019288 + 0.571429 NA intron (NM_006216, intron 1 of 8) MER44A|DNA|TcMar-Tigger 12346 NR_073116 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 112.714-5 chr2 17729446 17729916 + 0.571429 NA intron (NM_024624, intron 6 of 26) intron (NM_024624, intron 6 of 26) 24129 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 138.143-2 chr2 63037638 63037997 + 0.571429 NA intron (NM_001142615, intron 20 of 22) intron (NM_001142615, intron 20 of 22) 9894 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 175.714-6 chr3 90276052 90276412 + 0.571429 NA Intergenic ALR/Alpha|Satellite|centr 1168611 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 147.429 chr11 33521508 33521868 + 0.571429 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 145580 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 139-2 chr14 88985827 88986311 + 0.571429 NA Intergenic Intergenic 161418 NR_159362 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 110.286-9 chr9 27948767 27949106 + 0.571429 NA exon (NM_001258282, exon 7 of 7) exon (NM_001258282, exon 7 of 7) -375070 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 152.5 chr12 96043388 96043822 + 0.571429 NA promoter-TSS (NM_001256643) promoter-TSS (NM_001256643) -85 NM_001256644 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 103.429-2 chr10 97245789 97246025 + 0.571429 NA intron (NM_032900, intron 7 of 11) intron (NM_032900, intron 7 of 11) 24750 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 147.143 chr11 100021262 100021571 + 0.571429 NA intron (NM_001243270, intron 8 of 23) L1MD|LINE|L1 465271 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 137.571-3 chrX 113377081 113377452 + 0.571429 NA intron (NR_110399, intron 3 of 3) intron (NR_110399, intron 3 of 3) 334539 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 118.071-4 chr2 16780717 16781208 + 0.571429 NA Intergenic Intergenic -115128 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 169.286 chr10 62993538 62994205 + 0.571429 NA Intergenic Charlie8|DNA|hAT-Charlie -139376 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 177.857-6 chr3 105350479 105350863 + 0.571429 NA Intergenic L3|LINE|CR1 -16042 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 131.786-2 chr14 52447779 52448163 + 0.571429 NA intron (NM_001160047, intron 18 of 20) L1MA3|LINE|L1 104534 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 171.357 chr10 21311435 21311912 + 0.571429 NA Intergenic AluJo|SINE|Alu 61277 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 130.429-5 chr5 10171926 10172435 + 0.571429 NA Intergenic Intergenic 77708 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 172-2 chr15 65804773 65805279 + 0.571429 NA Intergenic Intergenic -12733 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 133.714-7 chr21 30607794 30608326 + 0.571429 NA Intergenic AluSz|SINE|Alu 5844 NM_181602 337966 Hs.194301 NM_181602 ENSG00000184724 KRTAP6-1 C21orf103|KAP6.1 keratin associated protein 6-1 protein-coding 108.143-11 chr5 40492065 40492297 + 0.571429 NA Intergenic Intergenic -187734 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 108.714-5 chr3 33180095 33180418 + 0.571429 NA intron (NM_015551, intron 3 of 4) Tigger3b|DNA|TcMar-Tigger 38554 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 113.072 chr11 69313461 69313685 + 0.571429 NA Intergenic Intergenic 19418 NM_001293294 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 111.143-6 chr3 57812384 57812779 + 0.571429 NA intron (NM_001304420, intron 1 of 21) L1MB3|LINE|L1 55325 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 171 chr11 19703125 19703689 + 0.571429 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -9430 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 174.571 chr1 168908344 168908821 + 0.571429 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 121641 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 107.714-5 chr2 9328905 9329120 + 0.571429 NA intron (NM_003887, intron 7 of 27) L2b|LINE|L2 93579 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 115.428-3 chr7 47300237 47300638 + 0.571429 NA intron (NM_022748, intron 23 of 30) intron (NM_022748, intron 23 of 30) 164366 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 184 chr12 14076724 14077144 + 0.571429 NA Intergenic Tigger3b|DNA|TcMar-Tigger -96578 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 152.714 chr2 146155873 146156242 + 0.571429 NA Intergenic MLT1B|LTR|ERVL-MaLR -431000 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 140.428 chr12 91400605 91401203 + 0.571429 NA Intergenic Intergenic -218087 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 141.714-3 chr18 8249544 8250021 + 0.571429 NA intron (NM_001105244, intron 17 of 32) intron (NM_001105244, intron 17 of 32) 117252 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 122.571 chr10 51613777 51614113 + 0.571429 NA intron (NM_001098512, intron 3 of 17) L1MA4A|LINE|L1 85650 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 97.5715-4 chr9 95356374 95356570 + 0.571429 NA Intergenic Intergenic -38763 NM_000136 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 112.5-4 chr2 28210888 28211302 + 0.571429 NA intron (NM_199193, intron 8 of 13) Tigger19a|DNA|TcMar-Tigger -4134 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 125-11 chr8 22007733 22008127 + 0.571429 NA Intergenic Intergenic -16204 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 99.2144-3 chr7 40918492 40918835 + 0.571429 NA Intergenic Intergenic 61276 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 115.5 chr11 67688207 67688472 + 0.571429 NA Intergenic Intergenic -7115 NM_001031615 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 143-2 chr2 36369489 36369932 + 0.571429 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 13932 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 149.429-2 chr5 37964863 37965142 + 0.571429 NA Intergenic LTR82A|LTR|ERVL 16511 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 119.571 chr1 17421211 17421713 + 0.571429 NA intron (NM_001136204, intron 5 of 11).2 AluSc|SINE|Alu 17074 NM_001136204 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 159.643-2 chr20 15465608 15466043 + 0.571429 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 268985 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 127.786-4 chr6 54283884 54284259 + 0.571429 NA Intergenic L3|LINE|CR1 -24370 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 151.929 chr11 61792625 61792983 + 0.571429 NA promoter-TSS (NM_004111) promoter-TSS (NM_004111) -107 NM_004111 2237 Hs.409065 NM_004111 ENSG00000168496 FEN1 FEN-1|MF1|RAD2 flap structure-specific endonuclease 1 protein-coding 184.143-3 chr7 114155231 114155730 + 0.571429 NA intron (NR_033766, intron 1 of 19) MER4D1|LTR|ERV1 69153 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 154.786 chr4 33574788 33575346 + 0.571429 NA Intergenic L1PA14|LINE|L1 464826 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 129.857-9 chr9 99372293 99372727 + 0.571429 NA intron (NR_102271, intron 2 of 5) MIRc|SINE|MIR 2747 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 101.643-10 chr8 99706328 99706505 + 0.571429 NA intron (NM_017890, intron 36 of 61) intron (NM_017890, intron 36 of 61) -169555 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 194.571 chr20 14887953 14888485 + 0.571429 NA non-coding (NR_037841, exon 2 of 3) non-coding (NR_037841, exon 2 of 3) 41299 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 105.143-18 chrX 20169314 20169608 + 0.571429 NA exon (NM_004586, exon 16 of 22) exon (NM_004586, exon 16 of 22) -27623 NM_001412 1964 Hs.522590 NM_001412 ENSG00000173674 EIF1AX EIF1A|EIF1AP1|EIF4C|eIF-1A|eIF-4C eukaryotic translation initiation factor 1A X-linked protein-coding 106.286 chr10 35908634 35908884 + 0.571429 NA Intergenic Intergenic 130457 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 98.2857 chr10 58111146 58111344 + 0.571429 NA Intergenic Intergenic 156649 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 122.429-2 chr9 122191813 122192190 + 0.571429 NA intron (NM_001286828, intron 3 of 3) intron (NM_001286828, intron 3 of 3) 29739 NM_001242335 26468 Hs.103137 NM_014368 ENSG00000106852 LHX6 LHX6.1 LIM homeobox 6 protein-coding 116.429-7 chr6 44891083 44891440 + 0.571429 NA intron (NM_181356, intron 12 of 12) L1MB4|LINE|L1 306509 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 111.571-6 chr8 135753442 135753928 + 0.571429 NA Intergenic Arthur1|DNA|hAT-Tip100 296229 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 115.714-8 chr17 73847810 73848118 + 0.571429 NA Intergenic Intergenic -19427 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 106.643-3 chr2 151732384 151732645 + 0.571429 NA intron (NM_001271208, intron 3 of 182) intron (NM_001271208, intron 3 of 182) 1962 NM_004543 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 119.572 chr1 80530375 80530649 + 0.571429 NA Intergenic Intergenic -5243 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 103.072 chr3 40550276 40550478 + 0.571429 NA Intergenic L1MC4|LINE|L1 25417 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 115.143-4 chr5 8690960 8691363 + 0.571429 NA Intergenic Intergenic -148571 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 103.714-15 chr3 126469837 126470086 + 0.571429 NA intron (NR_104249, intron 4 of 8) MIRc|SINE|MIR 5930 NM_025112 79364 Hs.440049 NM_025112 ENSG00000070476 ZXDC ZXDL ZXD family zinc finger C protein-coding 112.857-3 chr15 62606590 62606933 + 0.571429 NA Intergenic MIRb|SINE|MIR 38420 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 97.2143 chr14 55466281 55466599 + 0.571429 NA Intergenic MLT1N2-int|LTR|ERVL-MaLR -25895 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 147.429-2 chr11 86424327 86424695 + 0.571429 NA Intergenic Intergenic 49624 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 112.286-16 chr5 99807093 99807420 + 0.571429 NA Intergenic Intergenic 273266 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 116.929-4 chr6 47202088 47202457 + 0.571429 NA Intergenic Intergenic 107633 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 121.214-3 chr3 129754742 129755173 + 0.571429 NA intron (NM_001349271, intron 2 of 4) AluSx1|SINE|Alu -30844 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 113.143-4 chr17 66500957 66501201 + 0.571429 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -84225 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 96.4285-3 chr17 72814055 72814413 + 0.571429 NA intron (NM_001352692, intron 6 of 9) MER3|DNA|hAT-Charlie -173762 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 96.7857-10 chr8 100528488 100528750 + 0.571429 NA intron (NM_001270377, intron 3 of 4) intron (NM_001270377, intron 3 of 4) 31140 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 107.429-5 chr15 61473606 61473933 + 0.571429 NA Intergenic G-rich|Low_complexity|Low_complexity -244467 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 146 chr12 18994630 18995011 + 0.571429 NA Intergenic AluJr|SINE|Alu -134913 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 96.3572 chr11 91125361 91125694 + 0.571429 NA Intergenic L1MA7|LINE|L1 -256325 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 161.572-2 chr3 104880699 104881297 + 0.571429 NA Intergenic Intergenic -485715 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 132.786-2 chr14 52375130 52375379 + 0.571429 NA Intergenic L1PB1|LINE|L1 60942 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 146.429-2 chr2 107384409 107384771 + 0.571429 NA Intergenic Intergenic -35065 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 177.072 chrX 152539789 152540242 + 0.571429 NA Intergenic Intergenic -88700 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 153.428 chr12 2570337 2570672 + 0.571429 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 101716 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 114.357-5 chr6 132053685 132054019 + 0.571429 NA Intergenic Intergenic 61411 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 125.286-5 chr7 4235051 4235345 + 0.571429 NA intron (NM_001079653, intron 15 of 19) AluSz|SINE|Alu -100361 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 120.714-2 chr14 19871510 19871764 + 0.571429 NA Intergenic Intergenic -2464 NM_001348266 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 104.571-4 chr1 205743316 205743619 + 0.571429 NA intron (NM_022731, intron 1 of 6) (AATCACT)n|Simple_repeat|Simple_repeat 6715 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 109.143-12 chr8 134809264 134809634 + 0.571429 NA Intergenic Intergenic -4504 NR_029599 407033 NR_029599 ENSG00000199153 MIR30D MIRN30D|mir-30d microRNA 30d ncRNA 107-4 chr12 18577529 18577956 + 0.571429 NA intron (NM_001288774, intron 29 of 32) intron (NM_001288774, intron 29 of 32) 159767 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 163.072-2 chr9 74477023 74477519 + 0.571429 NA intron (NR_125791, intron 4 of 4) intron (NR_125791, intron 4 of 4) -20064 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 122.714-10 chr7 78943793 78944394 + 0.571429 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -64895 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 113.571-5 chr6 51790280 51790822 + 0.571429 NA intron (NM_138694, intron 53 of 66) intron (NM_138694, intron 53 of 66) 168681 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 105.429-13 chr9 28801355 28801625 + 0.571429 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 62216 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 155.857 chr10 123633654 123634115 + 0.571429 NA Intergenic Intergenic -32471 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 139.714-4 chr3 154494199 154494663 + 0.571429 NA Intergenic Intergenic -64241 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 109.5-2 chr10 31770598 31770918 + 0.571429 NA Intergenic L1ME4a|LINE|L1 138168 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 111.429-13 chr8 121019778 121020091 + 0.571429 NA Intergenic Intergenic -207888 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 111.786-3 chr17 72038799 72039100 + 0.571429 NA non-coding (NR_110124, exon 3 of 3) non-coding (NR_110124, exon 3 of 3) 8295 NR_110124 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 139.572 chr2 19128280 19128609 + 0.571429 NA Intergenic Intergenic -101473 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 107.357-13 chr5 138036297 138036626 + 0.571429 NA non-coding (NR_037900, exon 2 of 2) non-coding (NR_037900, exon 2 of 2) -3348 NM_001101801 51306 Hs.567453 NM_016603 ENSG00000031003 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13 member B protein-coding 111.286-8 chr4 56245709 56245951 + 0.571429 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 75635 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 110.286-3 chr16 47997718 47998018 + 0.571429 NA Intergenic Intergenic 32179 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 104.786-2 chr10 118203938 118204263 + 0.571429 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) 138224 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 119.357-2 chr12 11709478 11709988 + 0.571429 NA intron (NM_001987, intron 1 of 7) MLT2D|LTR|ERVL 59879 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 132.714-4 chr4 35729618 35729927 + 0.571429 NA Intergenic Intergenic 514167 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 107.571-6 chrX 84954542 84954891 + 0.571429 NA Intergenic MER4B-int|LTR|ERV1 20565 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 101.857-9 chr4 155661986 155662255 + 0.571429 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -4590 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 157.286-3 chr5 27251442 27251842 + 0.571429 NA Intergenic Intergenic -213056 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 110.857-5 chr17 53659781 53660044 + 0.571429 NA Intergenic Intergenic -163015 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 108.571-2 chr14 84949898 84950137 + 0.571429 NA Intergenic Intergenic -321915 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 164.5 chr11 79517821 79518431 + 0.571429 NA Intergenic MIRb|SINE|MIR -77096 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 212.143-2 chr18 64263617 64264496 + 0.571429 NA intron (NR_033881, intron 3 of 9) intron (NR_033881, intron 3 of 9) -4001 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 182.643 chr1 210045137 210045907 + 0.571429 NA intron (NM_153262, intron 4 of 7) intron (NM_153262, intron 4 of 7) 107305 NM_153262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 103.786-4 chr15 70607750 70607990 + 0.571429 NA Intergenic L2|LINE|L2 -7677 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 140.428-3 chr7 11116250 11116779 + 0.571429 NA intron (NR_033436, intron 16 of 16) L1MC4|LINE|L1 142642 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 139.286-8 chr8 124791368 124791745 + 0.571429 NA Intergenic MER1A|DNA|hAT-Charlie -30429 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 99.3572 chr1 68527400 68527701 + 0.571429 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -30468 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 192.857-3 chr8 113896192 113896788 + 0.571429 NA Intergenic Tigger2a|DNA|TcMar-Tigger -459551 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 162.786 chr1 159210701 159211121 + 0.571429 NA Intergenic L2a|LINE|L2 6036 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 109.286-6 chr9 85509767 85510136 + 0.571429 NA Intergenic Intergenic 232078 NM_015239 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 113.429-3 chr6 131193357 131193612 + 0.571429 NA intron (NM_016377, intron 5 of 7) L1M1|LINE|L1 -56920 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 129.286-6 chr16 57623593 57623942 + 0.571429 NA intron (NM_001370441, intron 1 of 13) intron (NM_001370441, intron 1 of 13) 3721 NM_005682 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 139.429-5 chr3 143949603 143949954 + 0.571429 NA Intergenic Intergenic -22020 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 98.2858 chr3 119508147 119508467 + 0.571429 NA intron (NM_016589, intron 4 of 6) L1MCa|LINE|L1 9760 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 124.714-9 chr8 134876475 134876837 + 0.571429 NA intron (NR_125427, intron 1 of 2) MLT1H|LTR|ERVL-MaLR 26721 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 109.857-7 chr7 68776508 68776727 + 0.571429 NA Intergenic MER34D|LTR|ERV1 756364 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 116.571-11 chr6 45143381 45143654 + 0.571429 NA intron (NM_001350325, intron 2 of 10) L1PB2|LINE|L1 54253 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 107.143-19 chr8 135810082 135810388 + 0.571429 NA Intergenic Intergenic 352779 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 159.286 chr12 16575492 16575889 + 0.571429 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 29689 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 104.143-13 chr5 152545643 152546009 + 0.571429 NA Intergenic Intergenic -140547 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 107.714-14 chr6 145258968 145259227 + 0.571429 NA Intergenic Intergenic 427780 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 108.857-4 chr2 82047491 82047714 + 0.571429 NA Intergenic L1PA8|LINE|L1 -580656 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 104.357-2 chr12 7177002 7177313 + 0.571429 NA Intergenic L1MC1|LINE|L1 -11528 NM_001351124 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 173.714-3 chr5 165620630 165621178 + 0.571429 NA Intergenic Intergenic 1150625 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 129.5-5 chr6 143268943 143269249 + 0.571429 NA intron (NM_001366354, intron 3 of 4) LTR16A|LTR|ERVL 104314 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 190.572 chr2 132429380 132429775 + 0.571429 NA intron (NM_001508, intron 1 of 1) MLT1N2|LTR|ERVL-MaLR -4134 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 172.071-2 chr22 46504975 46505822 + 0.571429 NA intron (NM_014246, intron 1 of 34) AluJo|SINE|Alu 32222 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 96.6429-4 chr21 29658733 29659203 + 0.571429 NA intron (NM_000830, intron 4 of 16) L4_A_Mam|LINE|RTE-X 62928 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 109-2 chr13 103074323 103074653 + 0.571429 NA Intergenic L1MEg|LINE|L1 -8071 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 105.572-3 chr3 184408557 184408836 + 0.571429 NA intron (NR_161198, intron 1 of 2) intron (NR_161198, intron 1 of 2) 7159 NR_161198 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 113.571-4 chr4 15317867 15318185 + 0.571429 NA intron (NR_125911, intron 1 of 5) L1MC4a|LINE|L1 -21962 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 111.857-4 chr14 84601729 84602273 + 0.571429 NA Intergenic Intergenic -669931 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 100.857-10 chr18 32195584 32195842 + 0.571429 NA intron (NM_005925, intron 5 of 14) intron (NM_005925, intron 5 of 14) 5674 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 133.714 chr1 58328161 58328453 + 0.571429 NA Intergenic Intergenic -77760 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 117.714 chr1 52401501 52401887 + 0.571429 NA intron (NM_001190818, intron 2 of 16) intron (NM_001190818, intron 2 of 16) 2729 NM_004153 4998 Hs.17908 NM_004153 ENSG00000085840 ORC1 HSORC1|ORC1L|PARC1 origin recognition complex subunit 1 protein-coding 183.714 chr1 5555067 5555508 + 0.571429 NA Intergenic MLT2B2|LTR|ERVL 307454 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 123.929-3 chr4 8826629 8826968 + 0.571429 NA Intergenic L1MC1|LINE|L1 45041 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 107-7 chr17 33871763 33872033 + 0.571429 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 284908 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 102.714-11 chr7 44506135 44506326 + 0.571429 NA Intergenic MamRep1151|LTR?|LTR? -15572 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 174.714-4 chr5 99828385 99828780 + 0.571429 NA Intergenic Intergenic 294592 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 196.286-2 chr8 109160918 109161449 + 0.571429 NA Intergenic Intergenic 74555 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 103.5-8 chr14 74042205 74042555 + 0.571429 NA intron (NM_025057, intron 5 of 11) intron (NM_025057, intron 5 of 11) 23031 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 111.786-7 chr9 18284845 18285097 + 0.571429 NA Intergenic L1ME4a|LINE|L1 -189182 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 158.857-2 chr6 48810875 48811273 + 0.571429 NA Intergenic L1MA8|LINE|L1 652179 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 112.286-17 chr5 103209451 103209699 + 0.571429 NA 3' UTR (NM_001345876, exon 29 of 29) 3' UTR (NM_001345876, exon 29 of 29) -49188 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 148.857-5 chr3 82816429 82816711 + 0.571429 NA Intergenic (TTTTATT)n|Simple_repeat|Simple_repeat 830428 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 98.0001 chr18 1688499 1688747 + 0.571429 NA Intergenic THE1D|LTR|ERVL-MaLR -328994 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 118.143-6 chr4 42781911 42782349 + 0.571429 NA Intergenic Intergenic -111136 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 104.357-10 chr5 113200776 113201097 + 0.571429 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 94002 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 116.571-8 chr5 15304024 15304308 + 0.571429 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -37606 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 185.929 chr16 74288884 74289479 + 0.571429 NA Intergenic Intergenic -7633 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 105.714-11 chr7 14306905 14307134 + 0.571429 NA intron (NM_001350717, intron 22 of 24) L2c|LINE|L2 -315594 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 100.214-2 chr10 53080423 53080652 + 0.571429 NA Intergenic L1PA16|LINE|L1 -308837 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 117.5-2 chr10 37070509 37070923 + 0.571429 NA Intergenic Intergenic -55141 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 226 chr11 85517020 85517584 + 0.571429 NA intron (NM_001142699, intron 3 of 27) L1MA3|LINE|L1 109968 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 120.429-7 chr4 153686331 153686622 + 0.571429 NA intron (NM_001318791, intron 1 of 2) L1MEd|LINE|L1 2196 NM_001318789 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 157.571-5 chr8 128533492 128533912 + 0.571429 NA intron (NR_121672, intron 2 of 7) Tigger3b|DNA|TcMar-Tigger 30977 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 121-3 chr13 19209581 19209843 + 0.571429 NA Intergenic Intergenic 27679 NR_126054 101928697 Hs.742697 NR_126054 LOC101928697 - uncharacterized LOC101928697 ncRNA 139.143-4 chr13 69402157 69402491 + 0.571429 NA Intergenic Intergenic 179978 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 101.714 chr11 101319397 101319780 + 0.571429 NA Intergenic L1M1|LINE|L1 -189775 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 140.286-2 chr6 53831756 53832084 + 0.571429 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 36915 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 114.143-8 chr8 123691843 123692132 + 0.571429 NA intron (NM_001003954, intron 9 of 11) L5|LINE|RTE-X -38186 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 149.572-2 chr8 135931744 135932104 + 0.571429 NA Intergenic Intergenic 474468 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 102-5 chr22 38491852 38492147 + 0.571429 NA intron (NM_006386, intron 11 of 12) intron (NM_006386, intron 11 of 12) 14312 NM_006386 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 196.429 chr2 208405369 208405853 + 0.571429 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) -1219 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 105.643-18 chrX 100367253 100367619 + 0.571429 NA intron (NM_020766, intron 2 of 4) MLT1A1|LTR|ERVL-MaLR 42837 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 119.929-2 chr17 2899426 2899715 + 0.571429 NA intron (NM_001330058, intron 2 of 24) AluSx3|SINE|Alu 66325 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 123.143-2 chr10 66238584 66239182 + 0.571429 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 667458 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 140.429-6 chr2 60635463 60635762 + 0.571429 NA Intergenic L2c|LINE|L2 -81958 NM_138559 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 126.143-6 chr9 1213446 1213719 + 0.571429 NA Intergenic Intergenic 162095 NM_001370532 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 131.857-9 chr8 135808039 135808316 + 0.571429 NA Intergenic Intergenic 350721 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 139.429 chr10 73214261 73214617 + 0.571429 NA intron (NM_173348, intron 7 of 13) L1P4|LINE|L1 32816 NM_015190 23234 Hs.408577 NM_015190 ENSG00000213551 DNAJC9 HDJC9|JDD1|SB73 DnaJ heat shock protein family (Hsp40) member C9 protein-coding 103.857-3 chr11 98062427 98062695 + 0.571429 NA Intergenic Intergenic -958388 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 145.571-2 chr20 46370779 46371299 + 0.571429 NA intron (NM_133171, intron 19 of 21) MIR|SINE|MIR -6581 NM_001281458 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 182.072 chr17 61752941 61753430 + 0.571429 NA intron (NM_032043, intron 14 of 19) MSTC|LTR|ERVL-MaLR 110374 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 119.429-3 chr18 7556105 7556718 + 0.571429 NA Intergenic Intergenic -10905 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 154.857-2 chr17 70247029 70247527 + 0.571429 NA Intergenic L1MEd|LINE|L1 77743 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 130.429-2 chr1 245749624 245749919 + 0.571429 NA intron (NM_022743, intron 11 of 11) intron (NM_022743, intron 11 of 11) -515254 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 128-2 chr14 65354005 65354369 + 0.571429 NA Intergenic Intergenic -19004 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 97.2857 chr11 101325506 101325714 + 0.571429 NA Intergenic MamGypLTR1c|LTR|Gypsy 194295 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 103.214-14 chr8 120557806 120558064 + 0.571429 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 112516 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 126.857-8 chr2 17526402 17526779 + 0.571429 NA intron (NM_001321233, intron 1 of 6) intron (NM_001321233, intron 1 of 6) 3824 NM_001321233 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 112.571-3 chr11 30556306 30556667 + 0.571429 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 24007 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 116.714-3 chr14 34005215 34005545 + 0.571429 NA Intergenic Intergenic -54306 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 164.857-2 chr19 46844543 46845010 + 0.571429 NA intron (NM_001301078, intron 2 of 4) AluJb|SINE|Alu 5538 NM_001301076 1175 Hs.119591 NM_004069 ENSG00000042753 AP2S1 AP17|CLAPS2|FBH3|FBHOk|HHC3 adaptor related protein complex 2 subunit sigma 1 protein-coding 107.572 chr19 46693036 46693498 + 0.571429 NA intron (NM_016457, intron 10 of 17) L2b|LINE|L2 16087 NR_036157 100422913 NR_036157 ENSG00000211513 MIR320E mir-320e microRNA 320e ncRNA 129.286-7 chr17 54977005 54977341 + 0.571429 NA intron (NM_178509, intron 1 of 17) intron (NM_178509, intron 1 of 17) -8388 NM_001162861 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 131.286-4 chr6 166954178 166954837 + 0.571429 NA intron (NM_003730, intron 1 of 8) intron (NM_003730, intron 1 of 8) 2043 NM_003730 8635 Hs.529989 NM_003730 ENSG00000026297 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 132.571-8 chr2 139167499 139167992 + 0.571429 NA Intergenic Intergenic 270421 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 97.4286-6 chr9 102186076 102186333 + 0.571429 NA Intergenic Intergenic -333433 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 104.929-3 chr10 44563986 44564241 + 0.571429 NA Intergenic Intergenic -179016 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 97.1429-3 chr18 5505187 5505383 + 0.571429 NA intron (NM_001330557, intron 1 of 21) L2|LINE|L2 35271 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 190.929-3 chr6 84041982 84042448 + 0.571429 NA intron (NM_001346544, intron 1 of 3) THE1C|LTR|ERVL-MaLR 8096 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 151.214 chr17 53169507 53169890 + 0.571429 NA Intergenic Intergenic 184193 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 129.857-3 chr2 137954950 137955272 + 0.571429 NA Intergenic Intergenic -9362 NM_001024075 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 103.286 chr10 29345693 29345946 + 0.571429 NA Intergenic Intergenic 56749 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 124-11 chrX 46902097 46902481 + 0.571429 NA Intergenic Intergenic -2585 NR_046101 724087 Hs.679235 NR_046101 ENSG00000204904 LINC01545 CXorf31 long intergenic non-protein coding RNA 1545 ncRNA 155.929-2 chr8 108337664 108338043 + 0.571429 NA Intergenic Intergenic -89136 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 145.143-3 chr2 222025349 222025821 + 0.571429 NA Intergenic Intergenic -272562 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 116.571-5 chr15 42225319 42225635 + 0.571429 NA intron (NM_015497, intron 15 of 19) intron (NM_015497, intron 15 of 19) -17173 NM_001301138 23339 Hs.88025 NM_015289 ENSG00000166887 VPS39 TLP|VAM6|hVam6p VPS39 subunit of HOPS complex protein-coding 159.143 chr14 41586381 41586872 + 0.571429 NA Intergenic Intergenic -20230 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 139.429-7 chr4 61358646 61359111 + 0.571429 NA intron (NM_001371342, intron 1 of 20) L2a|LINE|L2 156706 NM_001371342 106-9 chr5 169909997 169910398 + 0.571429 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 70298 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 145-2 chr2 168359788 168360172 + 0.571429 NA Intergenic Intergenic -96292 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 102.214-10 chr3 44660954 44661132 + 0.571429 NA TTS (NM_003420) TTS (NM_003420) 12311 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 126.286-7 chr8 132507720 132508086 + 0.571429 NA Intergenic Intergenic -26808 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 124.714-7 chr6 28267556 28267838 + 0.571429 NA intron (NM_001287421, intron 1 of 3) L2a|LINE|L2 338 NM_001287421 7741 Hs.157883 NM_007151 ENSG00000197062 ZSCAN26 SRE-ZBP|SREZBP|ZNF187 zinc finger and SCAN domain containing 26 protein-coding 132.286-5 chr22 28176987 28177298 + 0.571429 NA intron (NM_001145418, intron 5 of 22) L1MC2|LINE|L1 -256530 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 158.357-2 chr13 79095879 79096349 + 0.571429 NA Intergenic Intergenic -256064 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 198.286-2 chr18 52345455 52346046 + 0.571429 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 5553 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 159.857 chr10 63327134 63327484 + 0.571429 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 45739 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 134-6 chr16 6359463 6359764 + 0.571429 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 339910 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 113.143-12 chr8 144486257 144486552 + 0.571429 NA intron (NM_032902, intron 2 of 12) L1MD2|LINE|L1 8053 NM_001329444 84988 Hs.521937 NM_032902 ENSG00000160972 PPP1R16A MYPT3 protein phosphatase 1 regulatory subunit 16A protein-coding 103.571-3 chr13 91300205 91300581 + 0.571429 NA Intergenic MER1A|DNA|hAT-Charlie -47427 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 125-4 chr14 63994494 63994932 + 0.571429 NA intron (NM_015180, intron 22 of 114) L1MC3|LINE|L1 100412 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 178.429 chr11 108213891 108214239 + 0.571429 NA intron (NM_001321307, intron 1 of 17) AluJr4|SINE|Alu 8573 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 101.143-9 chr3 14278600 14278944 + 0.571429 NA Intergenic Intergenic 73796 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 153.143-2 chr3 111290609 111290926 + 0.571429 NA Intergenic L1PB1|LINE|L1 218951 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 134-2 chr1 103897436 103897815 + 0.571429 NA Intergenic MamRep1151|LTR?|LTR? 147784 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 159.429-3 chr21 45884687 45885088 + 0.571429 NA intron (NM_001348242, intron 5 of 17) L1MDa|LINE|L1 34926 NM_020528 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 114.143-6 chr7 53317606 53317836 + 0.571429 NA Intergenic Intergenic 282088 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 112.857-7 chr21 24363392 24363982 + 0.571429 NA Intergenic AluSx1|SINE|Alu -42310 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 101.143-16 chr6 55268720 55268926 + 0.571429 NA intron (NM_001526, intron 5 of 7) AluYe5|SINE|Alu -58646 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 178.857 chr2 71070907 71071446 + 0.571429 NA intron (NM_001365466, intron 3 of 9) MIRb|SINE|MIR 2528 NM_017567 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 114.929 chr2 17790567 17790884 + 0.571429 NA Intergenic Intergenic -25735 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 116.571-13 chr8 83750047 83750512 + 0.571429 NA Intergenic L1PB4|LINE|L1 346521 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 126.286-5 chr5 143847189 143847499 + 0.571429 NA Intergenic MLT1A|LTR|ERVL-MaLR 35183 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 126.286 chr1 68441496 68441899 + 0.571429 NA intron (NM_000329, intron 5 of 13) MIRb|SINE|MIR 8257 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 111.429 chr10 22981336 22981590 + 0.571429 NA exon (NM_001282747, exon 6 of 16) exon (NM_001282747, exon 6 of 16) 53410 NM_001282746 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 151.857-2 chr6 126578449 126578779 + 0.571429 NA Intergenic Intergenic 93983 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 150.857 chr10 27882264 27882706 + 0.571429 NA intron (NM_001290021, intron 10 of 13) L1M4|LINE|L1 99386 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 114.357-6 chr9 96295207 96295457 + 0.571429 NA intron (NM_000197, intron 2 of 10) (TTTGTT)n|Simple_repeat|Simple_repeat 6844 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 162.929-3 chr4 130596635 130597156 + 0.571429 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 220534 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 155.714-4 chr4 20904348 20904861 + 0.571429 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -21894 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 96.8572 chr1 79148199 79148409 + 0.571429 NA Intergenic Intergenic -141574 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 134.429-3 chr5 91632599 91633045 + 0.571429 NA Intergenic Intergenic -249505 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 112-10 chr5 31051305 31051638 + 0.571429 NA Intergenic Intergenic -142215 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 120.286-3 chr4 30377113 30377445 + 0.571429 NA Intergenic Intergenic -343090 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 133.214 chr12 50532623 50533012 + 0.571429 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 27832 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 213.928 chr8 62771039 62771584 + 0.571429 NA intron (NM_001304533, intron 4 of 6) L1M4a1|LINE|L1 -206550 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 149.214-3 chr20 11035473 11035965 + 0.571429 NA Intergenic Intergenic 9175 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 110-2 chr7 11251063 11251274 + 0.571429 NA Intergenic Intergenic 277296 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 110.429-3 chr14 44586343 44586869 + 0.571429 NA Intergenic AluSx1|SINE|Alu 79197 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 102.214-7 chr18 983377 983694 + 0.571429 NA Intergenic L2b|LINE|L2 -55542 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 99.1429-2 chr3 150278724 150278959 + 0.571429 NA intron (NR_110186, intron 2 of 3) intron (NR_110186, intron 2 of 3) 40141 NR_110167 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 113.5-6 chr9 119191931 119192392 + 0.571429 NA intron (NM_014618, intron 7 of 7) L1MA9|LINE|L1 177274 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 130.214-4 chr21 29808677 29809287 + 0.571429 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 60807 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 228.786 chr4 119183345 119184015 + 0.571429 NA intron (NM_016599, intron 5 of 5) L2a|LINE|L2 -28947 NM_019050 54532 Hs.431081 NM_019050 ENSG00000145390 USP53 - ubiquitin specific peptidase 53 protein-coding 176.429 chr11 54892083 54892513 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 185466 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 128.929-7 chr7 111766683 111767486 + 0.5 NA exon (NM_014705, exon 37 of 52) exon (NM_014705, exon 37 of 52) -41421 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 119.286-6 chr21 31899399 31899926 + 0.5 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 26642 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 106.071-4 chr11 126958299 126958569 + 0.5 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 17688 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 167.143 chr2 149595744 149596560 + 0.5 NA intron (NR_110240, intron 1 of 2) MIRc|SINE|MIR -8377 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 160.357 chr20 31053433 31054005 + 0.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203945 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 96.5-5 chr8 82891600 82891983 + 0.5 NA Intergenic Intergenic -20313 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 114.643-10 chr7 7997088 7997508 + 0.5 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 28502 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 97.7143-9 chr8 80762641 80762984 + 0.5 NA intron (NM_001033723, intron 2 of 8) THE1D-int|LTR|ERVL-MaLR 111656 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 126.786-4 chr2 105094838 105095176 + 0.5 NA intron (NM_182640, intron 9 of 10) L2b|LINE|L2 7937 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 117.643-4 chr6 122728157 122728501 + 0.5 NA Intergenic Intergenic -20872 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 103.429-7 chr21 23121049 23121428 + 0.5 NA Intergenic Intergenic 41954 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 235.428 chr10 93676422 93677419 + 0.5 NA intron (NM_145246, intron 11 of 13) intron (NM_145246, intron 11 of 13) 25652 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 173.143-2 chr7 36085476 36086087 + 0.5 NA Intergenic Intergenic -9529 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 165.5-2 chr14 60541952 60542407 + 0.5 NA Intergenic L2b|LINE|L2 33033 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 119.929-5 chr2 44539986 44540426 + 0.5 NA intron (NM_024766, intron 3 of 10) L1MC4|LINE|L1 178259 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 124.857 chr14 65540709 65541185 + 0.5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 69845 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 131.929-4 chr9 137104627 137105223 + 0.5 NA intron (NR_045721, intron 9 of 13) AluSx1|SINE|Alu 9808 NM_013379 29952 Hs.37916 NM_013379 ENSG00000176978 DPP7 DPP2|DPPII|QPP dipeptidyl peptidase 7 protein-coding 136.643-3 chr9 76525227 76525740 + 0.5 NA Intergenic Intergenic 24850 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 126.929 chr11 90150595 90151120 + 0.5 NA intron (NM_001300930, intron 5 of 17) intron (NM_001300930, intron 5 of 17) 16194 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 140.429-3 chr12 23431000 23431579 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 153297 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 101 chr1 172067010 172067299 + 0.5 NA intron (NM_001278252, intron 10 of 14) intron (NM_001278252, intron 10 of 14) -71654 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 129.072-2 chr3 47438902 47439400 + 0.5 NA intron (NM_012235, intron 2 of 22) AluSz|SINE|Alu 36790 NM_012235 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 136.429-2 chr14 58809604 58810007 + 0.5 NA Intergenic L1PB4|LINE|L1 -18483 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 98.3571-10 chr5 165007401 165007700 + 0.5 NA Intergenic Intergenic 537271 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 148-3 chr17 47953985 47954610 + 0.5 NA intron (NM_024320, intron 1 of 1) intron (NM_024320, intron 1 of 1) 3586 NM_024320 79170 Hs.368260 NM_024320 ENSG00000167183 PRR15L ATAD4 proline rich 15 like protein-coding 172.143 chr4 185040438 185040980 + 0.5 NA Intergenic Intergenic -11187 NR_147059 101928877 Hs.246506 NR_147059 ENSG00000250754 LINC02436 - long intergenic non-protein coding RNA 2436 ncRNA 112.429-4 chr14 42919724 42920260 + 0.5 NA Intergenic Intergenic 1313136 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 103-4 chr15 38348774 38349201 + 0.5 NA intron (NM_152594, intron 5 of 6) L1MB7|LINE|L1 96151 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 122.929-4 chr3 133744940 133745339 + 0.5 NA intron (NM_001354703, intron 7 of 22) Charlie7|DNA|hAT-Charlie -1254 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 124.357-7 chr4 174849750 174850268 + 0.5 NA intron (NR_125900, intron 2 of 4) L1MC1|LINE|L1 18281 NR_125900 101928551 Hs.721287 NR_125900 LOC101928551 - uncharacterized LOC101928551 ncRNA 134.571-10 chr3 127282534 127282883 + 0.5 NA Intergenic Intergenic 5338 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 101.429-4 chr9 27151784 27152198 + 0.5 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 42850 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 105.643-9 chr20 8948411 8948852 + 0.5 NA Intergenic Intergenic 117446 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 137.429-2 chr12 15716434 15716905 + 0.5 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 72719 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 165.071 chr17 829895 830280 + 0.5 NA intron (NM_022463, intron 1 of 7) L1PA8|LINE|L1 34024 NM_001205319 64359 Hs.527989 NM_022463 ENSG00000167693 NXN NRX|TRG-4 nucleoredoxin protein-coding 117-5 chr17 49971698 49972132 + 0.5 NA promoter-TSS (NM_001934) promoter-TSS (NM_001934) -851 NM_001934 1748 Hs.591167 NM_001934 ENSG00000108813 DLX4 BP1|DLX7|DLX8|DLX9|OFC15 distal-less homeobox 4 protein-coding 140.429-5 chr17 70188238 70188635 + 0.5 NA Intergenic LTR26|LTR|ERV1 18901 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 119-7 chr9 94072581 94072953 + 0.5 NA intron (NM_177995, intron 2 of 9) L1MC4|LINE|L1 -11662 NM_152422 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 96.3571-2 chr12 14450773 14450992 + 0.5 NA intron (NM_181352, intron 6 of 14) AluSz6|SINE|Alu 65601 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 169.429 chr10 79074841 79075365 + 0.5 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 6137 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 110.929-4 chr7 112259287 112259666 + 0.5 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 52781 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 109.5 chr1 154852441 154852674 + 0.5 NA intron (NM_001204087, intron 1 of 8) Charlie5|DNA|hAT-Charlie 7319 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 97.6428-5 chr9 69933962 69934198 + 0.5 NA Intergenic LTR10G|LTR|ERV1 -109501 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 122.357-2 chr15 57543404 57543769 + 0.5 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -48318 NM_001018090 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 138.643-4 chr20 22776900 22777394 + 0.5 NA Intergenic Intergenic -91803 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 111.286-5 chr22 26340559 26340876 + 0.5 NA intron (NM_001184776, intron 10 of 14) intron (NM_001184776, intron 10 of 14) -88543 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 130.214-5 chr8 86618804 86619228 + 0.5 NA intron (NM_019098, intron 13 of 17) intron (NM_019098, intron 13 of 17) 104581 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 139.143-6 chr4 77573952 77574400 + 0.5 NA intron (NM_006419, intron 1 of 4) MER41-int|LTR|ERV1 62423 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 97.8571 chr11 99528964 99529167 + 0.5 NA intron (NM_001243271, intron 2 of 20) AluSp|SINE|Alu -27080 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 124.143-3 chr4 136883317 136883686 + 0.5 NA intron (NR_149105, intron 3 of 3) AluSx|SINE|Alu -310255 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 144.714 chr15 72321845 72322243 + 0.5 NA Intergenic AluSx1|SINE|Alu -1887 NM_052840 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 109.143-7 chr5 5821097 5821620 + 0.5 NA Intergenic Intergenic 398681 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 128.143-3 chr3 133572918 133573352 + 0.5 NA promoter-TSS (NM_017548) promoter-TSS (NM_017548) -551 NM_001282762 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 97-5 chrX 84616714 84617120 + 0.5 NA Intergenic Intergenic -114464 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 121.357-2 chr13 49355487 49355850 + 0.5 NA intron (NM_001079670, intron 6 of 10) L1MC5a|LINE|L1 45874 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 124.928-2 chr3 138905268 138905688 + 0.5 NA Intergenic AluSx1|SINE|Alu 38542 NR_121649 103344930 Hs.195033 NR_121649 ENSG00000244578 LINC01391 - long intergenic non-protein coding RNA 1391 ncRNA 97.0714-4 chr2 78258838 78259083 + 0.5 NA intron (NR_110288, intron 1 of 3) L2a|LINE|L2 31771 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 116.143-3 chr14 61960813 61961210 + 0.5 NA intron (NM_001367663, intron 1 of 7) L1PA15|LINE|L1 33316 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 105.643-5 chr16 79938062 79938429 + 0.5 NA Intergenic Intergenic 142996 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 124.357-3 chr18 6809679 6810051 + 0.5 NA intron (NM_001366230, intron 1 of 17) L2a|LINE|L2 -24620 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 105.643-15 chr5 114096483 114096902 + 0.5 NA Intergenic Intergenic -265378 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 112.571-10 chr7 55128910 55129193 + 0.5 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 19212 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 110.429-4 chr16 63811143 63811363 + 0.5 NA Intergenic Intergenic 1310810 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 158.143-3 chr9 24900242 24900719 + 0.5 NA Intergenic Intergenic -354583 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 107.357 chr10 90053139 90053468 + 0.5 NA Intergenic Intergenic -95930 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 104 chr1 190376125 190376451 + 0.5 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 99722 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 150.714-3 chr2 75774740 75775180 + 0.5 NA Intergenic Intergenic -64045 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 135.143 chr2 115673204 115673562 + 0.5 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 329568 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 112.857-6 chr2 127904094 127904628 + 0.5 NA Intergenic AluJr|SINE|Alu -18421 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 110.286-4 chr2 167016221 167016569 + 0.5 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 124560 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 102.286-4 chr19 46050896 46051219 + 0.5 NA intron (NR_163177, intron 2 of 5) L1PBa|LINE|L1 -10041 NM_001002923 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 97.8571-3 chr12 33764350 33764579 + 0.5 NA Intergenic L1PB2|LINE|L1 -258032 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 99.8572 chr11 114500870 114501200 + 0.5 NA Intergenic Intergenic 58846 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 132-2 chr11 77000525 77000965 + 0.5 NA intron (NM_001300953, intron 6 of 9) L1MDa|LINE|L1 -33653 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 134.786-4 chr2 69217302 69217916 + 0.5 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 113927 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 96.7143-5 chr8 138961726 138961953 + 0.5 NA Intergenic MER4A1_|LTR|ERV1 -47798 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 190.714-2 chr7 11418275 11418992 + 0.5 NA intron (NM_015204, intron 15 of 26) intron (NM_015204, intron 15 of 26) 413565 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 184.071 chr12 107776739 107777293 + 0.5 NA TTS (NM_203436) TTS (NM_203436) 2631 NM_203436 121549 Hs.149910 NM_203436 ENSG00000187855 ASCL4 HASH4|bHLHa44 achaete-scute family bHLH transcription factor 4 protein-coding 114.357 chr11 13133819 13134279 + 0.5 NA Intergenic Intergenic 124733 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 105.857-10 chr5 45236290 45236822 + 0.5 NA Intergenic L1PA15|LINE|L1 427609 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 116.714-5 chr14 81732635 81733094 + 0.5 NA Intergenic L2c|LINE|L2 10274 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 158.5-3 chr2 98832500 98833142 + 0.5 NA intron (NM_207362, intron 4 of 9) intron (NM_207362, intron 4 of 9) -60923 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 107.357-6 chr14 63671673 63672001 + 0.5 NA Intergenic Intergenic -29966 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 122.857-11 chr8 136659974 136660343 + 0.5 NA intron (NR_147196, intron 2 of 5) L1MD1|LINE|L1 129360 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 107.357-2 chr10 90586193 90586704 + 0.5 NA Intergenic Intergenic -45643 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 131.857-3 chr16 74281127 74281405 + 0.5 NA Intergenic AluSx|SINE|Alu -15548 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 128.143 chr16 77394149 77394710 + 0.5 NA intron (NM_199355, intron 3 of 22) MIRb|SINE|MIR 40605 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 122.428 chr14 94481601 94481953 + 0.5 NA Intergenic MIR3|SINE|MIR -5580 NM_175739 327657 Hs.317970 NM_175739 ENSG00000170054 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin family A member 9 protein-coding 110.214 chr12 51485669 51486125 + 0.5 NA exon (NM_001258401, exon 17 of 25) exon (NM_001258401, exon 17 of 25) 60780 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 96.4286-4 chrX 152665877 152666276 + 0.5 NA Intergenic L1MDa|LINE|L1 28181 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 128.643-3 chr2 128402853 128403111 + 0.5 NA Intergenic Intergenic -84114 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 108.786-5 chr3 140152135 140152450 + 0.5 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 217107 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 98.9999-2 chr19 38775483 38775782 + 0.5 NA Intergenic Intergenic -2115 NM_002307 3963 Hs.702546 NM_002307 ENSG00000205076 LGALS7 GAL7|LGALS7A galectin 7 protein-coding 130.071 chr1 12687923 12688235 + 0.5 NA Intergenic L1ME4c|LINE|L1 -28031 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 176.143 chr10 32920255 32920811 + 0.5 NA intron (NM_002211, intron 9 of 15) intron (NM_002211, intron 9 of 15) 15025 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 129.571 chr1 188431215 188431527 + 0.5 NA Intergenic AluJr|SINE|Alu 987743 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 121.5-4 chr14 50660677 50660957 + 0.5 NA intron (NM_021818, intron 2 of 4) L1MA4A|LINE|L1 7489 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 124.214-4 chr8 62602776 62603100 + 0.5 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) 354084 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 109.786-4 chr4 128938030 128938437 + 0.5 NA intron (NM_144643, intron 17 of 20) intron (NM_144643, intron 17 of 20) 126389 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 110.857-12 chr6 165329763 165330374 + 0.5 NA 3' UTR (NM_001130690, exon 22 of 22) 3' UTR (NM_001130690, exon 22 of 22) -20463 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 121.714-5 chr5 73049537 73049875 + 0.5 NA intron (NM_001146032, intron 10 of 24) intron (NM_001146032, intron 10 of 24) -70869 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 122.286-9 chr8 100704649 100704893 + 0.5 NA intron (NM_002568, intron 13 of 14) MIR|SINE|MIR -1747 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 100.429-9 chr7 135688718 135689032 + 0.5 NA intron (NM_001318192, intron 13 of 15) AluJo|SINE|Alu 26361 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 144.786-5 chr5 45385719 45386165 + 0.5 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 310438 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 190.429 chr10 120619310 120620087 + 0.5 NA Intergenic HSMAR1|DNA|TcMar-Mariner 21749 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 97.5714-4 chr6 156272440 156272764 + 0.5 NA Intergenic Intergenic -106148 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 161.429-2 chr3 114978396 114978785 + 0.5 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -77965 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 135.929-3 chr20 55766283 55766883 + 0.5 NA Intergenic L1MA8|LINE|L1 238936 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 107.571-2 chr15 70216253 70216577 + 0.5 NA Intergenic Intergenic -118498 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 155.286 chr12 34507229 34507562 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 484899 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 97.4286-5 chr6 83033267 83033654 + 0.5 NA intron (NR_146807, intron 5 of 10) MSTA|LTR|ERVL-MaLR 32381 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 103.429-12 chr8 89425967 89426544 + 0.5 NA Intergenic Intergenic 331456 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 161.357-2 chr1 195269903 195270387 + 0.5 NA Intergenic LTR40a|LTR|ERVL 818570 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 98.8571-3 chr3 191997908 191998188 + 0.5 NA Intergenic Intergenic -240582 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 149-3 chr7 101030530 101030904 + 0.5 NA intron (NM_001040105, intron 1 of 12) AluJo|SINE|Alu 10636 NR_133665 140453 Hs.271819 NM_001004430 ENSG00000169876 MUC17 MUC-17|MUC-3|MUC3 mucin 17, cell surface associated protein-coding 100.357-2 chr16 83502729 83502990 + 0.5 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) -5487 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 103.214-4 chr11 67302200 67302507 + 0.5 NA 3' UTR (NM_001347901, exon 16 of 16) 3' UTR (NM_001347901, exon 16 of 16) -1177 NM_017857 54961 Hs.29173 NM_017857 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 119.214-3 chr3 115920996 115921599 + 0.5 NA intron (NM_001318915, intron 3 of 8) L1MB1|LINE|L1 -16171 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 120.929 chr18 23030695 23031090 + 0.5 NA Intergenic Intergenic 97016 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 179.714-2 chr8 129116799 129117393 + 0.5 NA Intergenic Intergenic 124144 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 118.643-3 chr5 93636647 93637009 + 0.5 NA intron (NM_032042, intron 10 of 10) L1M5|LINE|L1 -16040 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 119.714-11 chr5 155731929 155732270 + 0.5 NA Intergenic Intergenic -594658 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 111.357-6 chr2 122230921 122231346 + 0.5 NA Intergenic MIRc|SINE|MIR 475482 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 109.143 chr1 105804998 105805292 + 0.5 NA Intergenic Intergenic -186210 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 105.214-7 chr14 103065004 103065233 + 0.5 NA Intergenic AluSz6|SINE|Alu -7569 NM_006035 9578 Hs.654634 NM_006035 ENSG00000198752 CDC42BPB MRCKB CDC42 binding protein kinase beta protein-coding 168.857-2 chr13 97359470 97359895 + 0.5 NA intron (NM_207304, intron 6 of 6) intron (NM_207304, intron 6 of 6) -74487 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 116-5 chr5 14742010 14742610 + 0.5 NA intron (NM_054027, intron 7 of 11) intron (NM_054027, intron 7 of 11) 29616 NR_046285 100130744 Hs.660550 NR_046285 LOC100130744 - uncharacterized LOC100130744 ncRNA 116.786-4 chr16 61289430 61289800 + 0.5 NA Intergenic Intergenic -233849 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 109.143-9 chr7 48804994 48805369 + 0.5 NA Intergenic Intergenic -119366 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 157.214 chr8 81610483 81610910 + 0.5 NA intron (NR_146081, intron 7 of 7) intron (NR_146081, intron 7 of 7) 20581 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 127.929 chr1 184956338 184956683 + 0.5 NA intron (NM_052966, intron 1 of 13) Charlie4a|DNA|hAT-Charlie 17998 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 98.3571-2 chr10 91510059 91510266 + 0.5 NA intron (NM_182765, intron 20 of 20) intron (NM_182765, intron 20 of 20) 99877 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 122.5-5 chr5 159814047 159814597 + 0.5 NA intron (NR_109891, intron 2 of 2) MLT1A0-int|LTR|ERVL-MaLR 57062 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 159.214-3 chr19 44957255 44957825 + 0.5 NA intron (NM_001294, intron 1 of 13) intron (NM_001294, intron 1 of 13) 2160 NM_001294 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - CLPTM1 regulator of GABA type A receptor forward trafficking protein-coding 103.143 chr1 2826932 2827166 + 0.5 NA Intergenic Intergenic -26181 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 105.428-2 chr2 206727016 206727427 + 0.5 NA Intergenic Intergenic -8825 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 103.357-5 chr4 120858203 120858533 + 0.5 NA intron (NM_001300824, intron 2 of 13) intron (NM_001300824, intron 2 of 13) 64498 NM_001300823 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 109.214-5 chr3 116468847 116469432 + 0.5 NA Intergenic Intergenic -23652 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 96.9286 chr13 104901027 104901412 + 0.5 NA Intergenic Intergenic -564648 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 160.714-4 chr17 70214621 70215336 + 0.5 NA Intergenic Intergenic 45443 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 126.071 chr1 67265269 67265712 + 0.5 NA Intergenic L1ME3G|LINE|L1 -41874 NM_001319233 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 165.429-5 chr2 171420403 171420825 + 0.5 NA intron (NM_001321157, intron 1 of 10) L1MEd|LINE|L1 13376 NM_001321160 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 137.071 chr15 77621694 77622085 + 0.5 NA intron (NM_001301195, intron 3 of 3) intron (NM_001301195, intron 3 of 3) 11023 NM_032808 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 115.786 chr1 66764868 66765286 + 0.5 NA intron (NM_152665, intron 2 of 4) L2a|LINE|L2 12618 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 99.8572-4 chr20 49474954 49475207 + 0.5 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 7588 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 100.929-3 chr17 64128700 64129003 + 0.5 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 1293 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 135.071 chr11 111438309 111438791 + 0.5 NA Intergenic Intergenic -20364 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 102.071-11 chr8 101900083 101900459 + 0.5 NA intron (NM_001040624, intron 4 of 7) L1MD2|LINE|L1 -84161 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 117.714-6 chr5 90584371 90584774 + 0.5 NA intron (NR_003149, intron 1 of 89) MLT1G1|LTR|ERVL-MaLR 25775 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 150.071-2 chr20 6546751 6547263 + 0.5 NA Intergenic THE1A|LTR|ERVL-MaLR 120275 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 102.643-2 chr11 71767770 71768024 + 0.5 NA Intergenic LTR5_Hs|LTR|ERVK -19614 NM_152563 55199 Hs.567527 NM_018172 ENSG00000158483 FAM86C1 FAM86C family with sequence similarity 86 member C1 protein-coding 103.714-21 chr8 60507786 60508186 + 0.5 NA Intergenic AluSz|SINE|Alu -8924 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 176.429-4 chr7 46463499 46463931 + 0.5 NA Intergenic HUERS-P3-int|LTR|ERV1 233407 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 98.1429-7 chrX 56539206 56539402 + 0.5 NA Intergenic AluSc|SINE|Alu -24289 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 143-6 chr5 126271905 126272309 + 0.5 NA TTS (NR_105039) TTS (NR_105039) 13068 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 119.214-2 chr10 51796140 51796461 + 0.5 NA intron (NM_001098512, intron 3 of 17) MER33|DNA|hAT-Charlie -96705 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 107.071 chr7 2202704 2203031 + 0.5 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) 30078 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 115.071-5 chr4 71884735 71885063 + 0.5 NA Intergenic L2b|LINE|L2 -79379 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 149.214-4 chr22 45188442 45188808 + 0.5 NA TTS (NM_007172) TTS (NM_007172) 2987 NR_146602 105373064 NR_146602 LOC105373064 - uncharacterized LOC105373064 ncRNA 106.5-5 chr18 11552935 11553299 + 0.5 NA Intergenic Intergenic -56441 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 104.714-6 chr3 4779940 4780379 + 0.5 NA intron (NM_001168272, intron 48 of 60) MIRb|SINE|MIR -28569 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 105.214-4 chr12 57577143 57577378 + 0.5 NA intron (NM_004984, intron 20 of 28) L1ME4a|LINE|L1 -13932 NM_001146259 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 100.786-3 chr10 28038957 28039299 + 0.5 NA Intergenic L1PB1|LINE|L1 34250 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 143.643-2 chr19 29993056 29993573 + 0.5 NA intron (NM_001252641, intron 4 of 10) intron (NM_001252641, intron 4 of 10) 51075 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 142.643-5 chr9 116042850 116043172 + 0.5 NA Intergenic Intergenic -110780 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 165-4 chr6 24035977 24036368 + 0.5 NA Intergenic L1MA7|LINE|L1 -90043 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 132.071-3 chr4 122658792 122659156 + 0.5 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -37908 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 122.643 chr11 124494789 124495086 + 0.5 NA Intergenic L1MEf|LINE|L1 48717 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 129.429 chr22 25915506 25915851 + 0.5 NA intron (NM_001318245, intron 33 of 43) L1ME3Cz|LINE|L1 173490 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 102.286-12 chr8 102053237 102053627 + 0.5 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 69000 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 97.0714-3 chr2 28388266 28388478 + 0.5 NA intron (NR_103831, intron 1 of 1) LTR33|LTR|ERVL -4486 NM_005253 2355 Hs.220971 NM_005253 ENSG00000075426 FOSL2 FRA2 FOS like 2, AP-1 transcription factor subunit protein-coding 125.214-3 chr2 55768396 55768725 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -74716 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 98.6429 chr17 58949020 58949274 + 0.5 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 157733 NM_015294 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 98.3571 chr1 195291065 195291421 + 0.5 NA Intergenic Intergenic 797472 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 138.143-3 chr20 31700605 31700920 + 0.5 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -20745 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 99.7143-4 chr9 75358878 75359200 + 0.5 NA Intergenic LTR16A1|LTR|ERVL 270525 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 224.643 chr11 58377226 58378009 + 0.5 NA Intergenic L1MA5|LINE|L1 -18548 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 104.643-6 chr8 68641691 68642129 + 0.5 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -310419 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 114.643-4 chr20 53319606 53320052 + 0.5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 134546 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 106.143-2 chr16 14171291 14171552 + 0.5 NA intron (NM_001308142, intron 3 of 16) AluYc|SINE|Alu -15265 NM_001365414 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 108.929-7 chr8 80109287 80109549 + 0.5 NA intron (NM_001025253, intron 1 of 7) AluSq10|SINE|Alu -28587 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 112.429-2 chr10 85839325 85839612 + 0.5 NA intron (NM_017551, intron 8 of 15) L1PA13|LINE|L1 261737 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 96.8572-6 chr5 130069074 130069445 + 0.5 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 164794 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 134.286-3 chr19 28635063 28635340 + 0.5 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 28513 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 103.571-2 chr11 5341088 5341306 + 0.5 NA non-coding (NR_038321, exon 5 of 5) non-coding (NR_038321, exon 5 of 5) -10311 NM_001004750 390058 Hs.553730 NM_001004750 ENSG00000176239 OR51B6 HOR5'Beta6 olfactory receptor family 51 subfamily B member 6 protein-coding 103.714-18 chr5 32690728 32691075 + 0.5 NA promoter-TSS (NM_001364458) promoter-TSS (NM_001364458) 29 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 151.571-4 chr8 121654984 121655334 + 0.5 NA Intergenic L1MDa|LINE|L1 -13719 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 105.714-3 chr11 55928873 55929141 + 0.5 NA Intergenic L1MB7|LINE|L1 7393 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 98.2857-5 chr5 59897517 59898112 + 0.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -4088 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 119.143-6 chr2 158481493 158481946 + 0.5 NA intron (NM_001005476, intron 1 of 20) L1MB7|LINE|L1 24767 NM_001304969 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 187.143 chr10 61406211 61406823 + 0.5 NA TTS (NM_178505) TTS (NM_178505) -46122 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 126.786-2 chr19 28797004 28797468 + 0.5 NA Intergenic Intergenic -69542 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 117.571-8 chr20 45554770 45555236 + 0.5 NA intron (NM_130896, intron 4 of 5) MIRb|SINE|MIR -7602 NM_001302861 57119 Hs.121084 NM_020398 ENSG00000101448 EPPIN CT71|CT72|SPINLW1|WAP7|WFDC7|dJ461P17.2 epididymal peptidase inhibitor protein-coding 129.286-4 chr15 69975584 69975932 + 0.5 NA Intergenic Intergenic 103710 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 107.143-20 chr8 137723742 137724257 + 0.5 NA Intergenic L1MB7|LINE|L1 -310411 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 97.4999-2 chr17 35356482 35356870 + 0.5 NA intron (NM_001104588, intron 5 of 6) L1ME4b|LINE|L1 16945 NM_001104587 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 127.214-5 chr8 137493349 137493711 + 0.5 NA Intergenic Intergenic -79942 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 143-4 chr4 47067331 47067644 + 0.5 NA intron (NM_000812, intron 3 of 8) Tigger1|DNA|TcMar-Tigger 35920 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 109.929-8 chr9 89519620 89519839 + 0.5 NA Intergenic L1M4|LINE|L1 -21756 NM_001371194 138.286-2 chr7 139230836 139231265 + 0.5 NA promoter-TSS (NM_173569) promoter-TSS (NM_173569) -187 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 99.4286-6 chr12 77300341 77300592 + 0.5 NA Intergenic Intergenic -234897 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 117.714-7 chr5 105169754 105170177 + 0.5 NA Intergenic Intergenic 70491 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 102.714-3 chr12 120086949 120087195 + 0.5 NA intron (NM_001367886, intron 8 of 9) CpG 29681 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 142.571-3 chr6 94571059 94571563 + 0.5 NA Intergenic Intergenic 853008 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 142.857-3 chr20 31879936 31880459 + 0.5 NA intron (NR_160277, intron 1 of 12) intron (NR_160277, intron 1 of 12) 380 NM_001367620 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 127.714-10 chr5 42170677 42171106 + 0.5 NA intron (NR_104635, intron 1 of 3) intron (NR_104635, intron 1 of 3) 4454 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 132.571-11 chr7 73612903 73613216 + 0.5 NA intron (NM_032951, intron 2 of 16) intron (NM_032951, intron 2 of 16) 11463 NM_032953 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 136.143-2 chr14 66886372 66886729 + 0.5 NA intron (NM_001024218, intron 5 of 21) L1M4c|LINE|L1 -302890 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 128.143-2 chr19 39417071 39417617 + 0.5 NA intron (NM_022835, intron 7 of 18) AluSq2|SINE|Alu 3565 NM_001351694 64857 Hs.631574 NM_022835 ENSG00000090924 PLEKHG2 ARHGEF42|CLG|CTB-60E11.4|LDAMD pleckstrin homology and RhoGEF domain containing G2 protein-coding 100.571-11 chr9 118852342 118852828 + 0.5 NA Intergenic L1MEc|LINE|L1 172914 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 126.214 chr1 242474646 242474972 + 0.5 NA intron (NM_001320272, intron 2 of 10) L2c|LINE|L2 -25327 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 131.571-2 chr12 43226640 43227047 + 0.5 NA Intergenic L2a|LINE|L2 71528 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 107.571-5 chr9 26886858 26887169 + 0.5 NA intron (NM_001167575, intron 2 of 5) AluSg|SINE|Alu 5789 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 97.5714-2 chr17 80031755 80032144 + 0.5 NA intron (NM_019020, intron 1 of 11) intron (NM_019020, intron 1 of 11) 3923 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 119.071-4 chr5 124079300 124079793 + 0.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 358974 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 101-2 chr10 70794725 70795000 + 0.5 NA Intergenic MER84-int|LTR|ERV1 -9443 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 111.143 chr12 79056235 79056536 + 0.5 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 10693 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 132.571-7 chr2 46700118 46700481 + 0.5 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 1004 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 171.286-2 chr12 46702161 46702637 + 0.5 NA Intergenic Intergenic 123598 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 174.143-4 chr15 63235301 63235940 + 0.5 NA intron (NM_016530, intron 1 of 7) L1ME3C|LINE|L1 -41930 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 100.429-6 chr3 109867525 109867742 + 0.5 NA Intergenic L1MCa|LINE|L1 264805 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 129.214-3 chr17 47463845 47464167 + 0.5 NA intron (NR_033934, intron 4 of 5) AluSg|SINE|Alu 28614 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 105.071-3 chr12 102720707 102721217 + 0.5 NA Intergenic Intergenic 103437 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 103.5-5 chr12 46718974 46719284 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 106868 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 141.571-4 chr8 138137463 138137818 + 0.5 NA intron (NM_015912, intron 18 of 19) intron (NM_015912, intron 18 of 19) -54095 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 154.643 chr6 135055775 135056118 + 0.5 NA Intergenic Intergenic -1124 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 107.214-3 chr3 18120719 18121158 + 0.5 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 158386 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 117-2 chr1 239662503 239662868 + 0.5 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 33612 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 126.429-6 chr8 112527065 112527504 + 0.5 NA intron (NM_001363185, intron 25 of 66) L1MEc|LINE|L1 -116209 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 131.214-3 chr8 144078718 144079057 + 0.5 NA promoter-TSS (NR_106906) promoter-TSS (NR_106906) 215 NM_019037 54512 Hs.632041 NM_019037 ENSG00000178896 EXOSC4 RRP41|RRP41A|Rrp41p|SKI6|Ski6p|hRrp41p|p12A exosome component 4 protein-coding 119.857 chr1 204321794 204322242 + 0.5 NA intron (NM_014935, intron 1 of 22) MIR|SINE|MIR 37911 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 113.857-9 chr6 73868698 73869103 + 0.5 NA Intergenic L1MC4|LINE|L1 172697 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 98.5714 chr11 88491768 88492209 + 0.5 NA Intergenic Intergenic -12588 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 177.929 chr7 31881102 31881813 + 0.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 188950 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 134.5 chr10 76888083 76888523 + 0.5 NA intron (NR_120655, intron 1 of 3) MER5A|DNA|hAT-Charlie 259 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 155.429-3 chr21 32232173 32232801 + 0.5 NA Intergenic L1M3|LINE|L1 46562 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 128.214-7 chr3 16915072 16915358 + 0.5 NA intron (NM_001144382, intron 1 of 5).2 intron (NM_001144382, intron 1 of 5).2 -17875 NM_015184 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 134.071-3 chr9 70315104 70315491 + 0.5 NA intron (NM_015110, intron 12 of 24) intron (NM_015110, intron 12 of 24) 56319 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 120.071-5 chr8 84625974 84626328 + 0.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -79776 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 133.571-2 chr12 83878966 83879348 + 0.5 NA Intergenic Intergenic 1033642 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 150.286-3 chr7 54783822 54784140 + 0.5 NA intron (NR_110040, intron 2 of 2) L1MC4a|LINE|L1 24668 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 134.571-5 chr14 45706405 45706792 + 0.5 NA intron (NR_146547, intron 1 of 1) intron (NR_146547, intron 1 of 1) 9004 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 112.214-5 chr6 152405320 152405579 + 0.5 NA intron (NM_182961, intron 45 of 145) MER63B|DNA|hAT-Blackjack 24919 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 99.2857 chr11 105752866 105753189 + 0.5 NA exon (NM_001112812, exon 3 of 10) exon (NM_001112812, exon 3 of 10) 142321 NM_001112812 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 155.714-2 chr17 59248061 59248424 + 0.5 NA intron (NM_182569, intron 3 of 9) AluJb|SINE|Alu 27731 NM_001165994 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 100.357 chr13 39452936 39453227 + 0.5 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 150112 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 98.7143-5 chr7 48065412 48065685 + 0.5 NA Intergenic L1MC4|LINE|L1 -23055 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 180.357 chrX 79181013 79181482 + 0.5 NA Intergenic MER21C|LTR|ERVL 10275 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 104.786-12 chr6 124431716 124432012 + 0.5 NA intron (NM_153355, intron 3 of 5) (ACA)n|Simple_repeat|Simple_repeat 148859 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 107.786 chr10 17025307 17025643 + 0.5 NA intron (NM_001081, intron 27 of 66) MIR|SINE|MIR 104342 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 155.071 chr8 87127150 87127744 + 0.5 NA intron (NM_173538, intron 4 of 10) L1ME1|LINE|L1 261032 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 188.428 chr10 63358173 63358763 + 0.5 NA intron (NM_001322258, intron 2 of 24) Alu|SINE|Alu 14580 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 137.857-5 chr7 93132804 93133311 + 0.5 NA exon (NM_001303497, exon 6 of 6) exon (NM_001303497, exon 6 of 6) -15034 NM_001193307 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 139.071 chr1 23104913 23105402 + 0.5 NA intron (NM_001142546, intron 2 of 3) L2|LINE|L2 60852 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 101.143-3 chr12 5558546 5558885 + 0.5 NA Intergenic Intergenic 64583 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 106.5-8 chr7 1274175 1274395 + 0.5 NA Intergenic Intergenic 41413 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 113.143-5 chr18 1334152 1334475 + 0.5 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 25316 NR_023926 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 109.786-6 chr6 157302529 157303005 + 0.5 NA intron (NM_018452, intron 3 of 3) intron (NM_018452, intron 3 of 3) 21492 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 102.714-5 chr14 51395102 51395463 + 0.5 NA intron (NR_146549, intron 1 of 3) MIR3|SINE|MIR 1853 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 100.714-6 chr15 79687601 79687824 + 0.5 NA Intergenic Intergenic 209285 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 149.786-8 chr9 84868215 84868743 + 0.5 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 162578 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 117.357-6 chrX 95475161 95475510 + 0.5 NA Intergenic Intergenic -412109 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 136.357-5 chr5 31322900 31323486 + 0.5 NA exon (NM_004932, exon 12 of 12) exon (NM_004932, exon 12 of 12) 129507 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 104.572-2 chr5 119529745 119530201 + 0.5 NA exon (NM_001292028, exon 21 of 24) exon (NM_001292028, exon 21 of 24) 77476 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 103.429-10 chr7 20276461 20276811 + 0.5 NA Intergenic L1MA4|LINE|L1 -20072 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 128.857-4 chr3 77094482 77094944 + 0.5 NA intron (NM_001290039, intron 1 of 26) L1MB8|LINE|L1 -3299 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 112.429-10 chr8 41470012 41470236 + 0.5 NA Intergenic Tigger5|DNA|TcMar-Tigger -20272 NM_001362979 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 115.143-3 chr17 60457379 60457877 + 0.5 NA intron (NM_006380, intron 9 of 12) AluJo|SINE|Alu 35139 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 113.571-2 chr1 225870777 225871216 + 0.5 NA intron (NM_014698, intron 6 of 24) intron (NM_014698, intron 6 of 24) 11384 NM_014698 9725 Hs.119387 NM_014698 ENSG00000196187 TMEM63A KIAA0792 transmembrane protein 63A protein-coding 109 chr13 81760685 81761057 + 0.5 NA Intergenic AluSc8|SINE|Alu -533888 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 113-3 chr15 94113188 94113498 + 0.5 NA Intergenic L1M2|LINE|L1 -5405 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 129.857-8 chr7 8680899 8681283 + 0.5 NA intron (NM_152745, intron 2 of 2) MIR3|SINE|MIR 247482 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 99.3572-4 chr3 178268960 178269324 + 0.5 NA Intergenic L2b|LINE|L2 -150059 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 124.929-3 chr2 236771070 236771486 + 0.5 NA Intergenic L1MA9|LINE|L1 201453 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 125.571-2 chr1 31443605 31444047 + 0.5 NA Intergenic MER77B|LTR|ERVL 30013 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 123.071-2 chr3 88833716 88834102 + 0.5 NA Intergenic Intergenic -273712 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 128.857-3 chr22 33445824 33446296 + 0.5 NA intron (NM_133642, intron 6 of 14) MER21C|LTR|ERVL -9391 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 124.786-2 chr4 183596659 183597241 + 0.5 NA Intergenic Intergenic 62235 NM_152682 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 149.357-5 chr8 80818050 80818606 + 0.5 NA intron (NM_001033723, intron 2 of 8) (AT)n|Simple_repeat|Simple_repeat 56140 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 99.9286-4 chr6 157843187 157843787 + 0.5 NA intron (NM_016224, intron 1 of 17) Tigger2a|DNA|TcMar-Tigger 20241 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 109-11 chr8 59451545 59451837 + 0.5 NA Intergenic Intergenic 332481 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 116.286-3 chr19 48618678 48619173 + 0.5 NA promoter-TSS (NM_001204159) promoter-TSS (NM_001204159) 253 NM_001270490 6141 Hs.515517 NM_000979 ENSG00000063177 RPL18 DBA18|L18 ribosomal protein L18 protein-coding 145.5 chr2 41636011 41636466 + 0.5 NA Intergenic Intergenic -241317 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 143.357-3 chr21 26249418 26250032 + 0.5 NA Intergenic L1M7|LINE|L1 -78597 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 128-3 chr2 20394177 20394612 + 0.5 NA Intergenic Intergenic -42141 NM_001352920 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 105.071 chr10 25294388 25294760 + 0.5 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -118298 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 106.786-4 chr2 64813233 64813682 + 0.5 NA Intergenic L1ME3A|LINE|L1 50174 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 116.286-6 chr8 140553834 140554272 + 0.5 NA intron (NM_001164623, intron 10 of 17) intron (NM_001164623, intron 10 of 17) 42057 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 99.7142-4 chr9 28578530 28578907 + 0.5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 140587 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 104.786-4 chr14 50170349 50170597 + 0.5 NA intron (NM_006939, intron 8 of 22) AluJb|SINE|Alu -53901 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 99.4286-5 chr11 77164834 77165083 + 0.5 NA intron (NM_001127180, intron 14 of 48) MIRb|SINE|MIR 36712 NM_001369365 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 119.643-2 chr3 144592580 144592886 + 0.5 NA Intergenic L3|LINE|CR1 619652 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 183.786-2 chr8 102759386 102760037 + 0.5 NA Intergenic AluSz6|SINE|Alu -47111 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 105.643-14 chr3 164914244 164914616 + 0.5 NA Intergenic LTR82B|LTR|ERVL -82950 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 101.071-4 chr3 170746132 170746464 + 0.5 NA intron (NR_135556, intron 5 of 5) LOR1a|LTR|ERV1 123897 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 150.5 chr1 218950068 218950547 + 0.5 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -31796 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 107.429-4 chr13 81452012 81452226 + 0.5 NA Intergenic L2c|LINE|L2 -225136 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 107.643-5 chr20 1471262 1471499 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -3688 NM_018839 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 119.714-15 chr8 13610500 13610739 + 0.5 NA Intergenic Intergenic -5999 NM_001348082 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 122-2 chr11 32651737 32652150 + 0.5 NA intron (NM_001008391, intron 12 of 17) intron (NM_001008391, intron 12 of 17) 68112 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 105.929-2 chr1 162278925 162279207 + 0.5 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) -63480 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 130.929-2 chr7 5542369 5542826 + 0.5 NA Intergenic AluSz6|SINE|Alu -11996 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 144.928 chr14 42933512 42933969 + 0.5 NA Intergenic Intergenic 1326884 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 106.071-9 chr8 104434582 104434805 + 0.5 NA intron (NM_001385, intron 4 of 9) L2c|LINE|L2 32362 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 125.357-4 chr4 37529334 37529998 + 0.5 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) -54567 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 154.5-2 chr21 45666159 45666634 + 0.5 NA intron (NM_001348240, intron 1 of 16) L1M4|LINE|L1 -2478 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 113.857-3 chr16 35657130 35657667 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -89154 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 99.4999 chr12 89919872 89920229 + 0.5 NA Intergenic Intergenic -27643 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 110.786 chr11 102975653 102975880 + 0.5 NA Intergenic Intergenic -20034 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 113.5-5 chr5 111064686 111064947 + 0.5 NA Intergenic Intergenic -5264 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 106.214-2 chr2 187683546 187683911 + 0.5 NA Intergenic L1M3|LINE|L1 -129223 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 96.7857-2 chr1 71604259 71604497 + 0.5 NA intron (NM_173808, intron 5 of 6) intron (NM_173808, intron 5 of 6) 232634 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 101.929 chr14 49202721 49202977 + 0.5 NA Intergenic Intergenic 383531 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 125.286-3 chr12 127951179 127951452 + 0.5 NA non-coding (NR_046392, exon 5 of 5) non-coding (NR_046392, exon 5 of 5) 32576 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 201.929 chr20 49260655 49261110 + 0.5 NA intron (NM_021035, intron 6 of 13) AluSx|SINE|Alu 17175 NM_021035 57169 Hs.371794 NM_021035 ENSG00000124201 ZNFX1 - zinc finger NFX1-type containing 1 protein-coding 123.429 chr1 45113864 45114145 + 0.5 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 92601 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 96.7857-7 chr4 89998993 89999221 + 0.5 NA Intergenic Intergenic 104253 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 129.428-2 chr11 74438417 74438715 + 0.5 NA Intergenic Intergenic 28989 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 114.286-7 chr20 51379624 51379923 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 73204 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 104.571-18 chr8 49703527 49703750 + 0.5 NA Intergenic Intergenic -191458 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 179.929 chr8 26013991 26014614 + 0.5 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 31111 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 132.857 chr1 176758337 176758801 + 0.5 NA intron (NM_020318, intron 14 of 22) intron (NM_020318, intron 14 of 22) 270876 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 177.5-2 chr5 34617961 34618494 + 0.5 NA Intergenic Intergenic -38101 NM_015577 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 156.429 chr2 104307629 104308095 + 0.5 NA Intergenic Intergenic 100470 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 137.357 chr1 91309121 91309488 + 0.5 NA intron (NM_001017975, intron 30 of 38) intron (NM_001017975, intron 30 of 38) 95533 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 109.857-4 chr5 136396824 136397333 + 0.5 NA Intergenic Intergenic -31602 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 120.357-5 chr5 82808857 82809311 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -31071 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 127.571-3 chr2 53005238 53005830 + 0.5 NA Intergenic Intergenic -302919 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 111.643 chr1 116296735 116297266 + 0.5 NA Intergenic Intergenic -76244 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 107.714-16 chr8 120913748 120914173 + 0.5 NA Intergenic Intergenic -101914 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 108.214 chr11 104033977 104034304 + 0.5 NA intron (NM_025208, intron 1 of 6) L2a|LINE|L2 -2500 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 129.286-9 chr4 62376125 62376464 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -214529 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 118.786 chr2 227102190 227102580 + 0.5 NA intron (NM_000092, intron 15 of 47) intron (NM_000092, intron 15 of 47) 62174 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 133.643-7 chr5 121574990 121575306 + 0.5 NA Intergenic Intergenic 252598 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 123.286-9 chr7 55086467 55086801 + 0.5 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -23205 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 105.071-4 chr5 15173356 15173641 + 0.5 NA Intergenic L1M1|LINE|L1 93062 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 111.929 chr11 23392602 23392895 + 0.5 NA Intergenic Intergenic 26442 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 106.143-8 chr2 191647426 191647795 + 0.5 NA Intergenic Intergenic -30462 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 110.143-4 chr1 234500771 234501127 + 0.5 NA Intergenic Intergenic -21770 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 98.8572-2 chr18 48796885 48797232 + 0.5 NA intron (NM_014772, intron 9 of 11) intron (NM_014772, intron 9 of 11) 126458 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 149.786 chr1 55903616 55904020 + 0.5 NA Intergenic L1ME1|LINE|L1 41145 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 115.643-3 chr5 95137062 95137296 + 0.5 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -55313 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 102.5 chr1 110005314 110005828 + 0.5 NA intron (NM_001242675, intron 1 of 16) intron (NM_001242675, intron 1 of 16) 1623 NM_001242675 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 125-5 chr18 75648070 75648326 + 0.5 NA Intergenic Intergenic 64205 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 108.143-3 chr12 9361090 9361345 + 0.5 NA Intergenic L1MB7|LINE|L1 -6247 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 161.143-2 chr1 181702921 181703542 + 0.5 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 219714 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 116.857-3 chr13 29822317 29822695 + 0.5 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 28111 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 120.571-6 chr6 130984091 130984547 + 0.5 NA intron (NM_001135554, intron 1 of 14) Tigger3b|DNA|TcMar-Tigger -13836 NM_001350313 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 127.071 chr2 189788138 189788434 + 0.5 NA intron (NR_110332, intron 2 of 12) intron (NR_110332, intron 2 of 12) 3836 NM_001128144 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 102.143-10 chr7 14045039 14045418 + 0.5 NA Intergenic L1PA4|LINE|L1 -53803 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 100.143-6 chr2 44160649 44160911 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -8023 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 150.714 chr10 31710281 31710674 + 0.5 NA Intergenic Intergenic 198449 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 116.714-7 chr7 109141329 109141791 + 0.5 NA Intergenic L1MA1|LINE|L1 -256973 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 117.929-3 chr3 106173698 106174176 + 0.5 NA Intergenic Intergenic -304536 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 165.143-3 chr5 57824398 57824933 + 0.5 NA Intergenic Intergenic 74497 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 98.3571-3 chr11 10256618 10256960 + 0.5 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 37418 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 101.643 chr1 170577650 170578046 + 0.5 NA Intergenic L1MA8|LINE|L1 -45239 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 110.714-3 chr11 84019242 84019756 + 0.5 NA intron (NM_001142699, intron 11 of 27) LTR85c|LTR|Gypsy? 253781 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 108.786-7 chr8 131328102 131328368 + 0.5 NA Intergenic Intergenic -287326 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 135.929-2 chr2 76187122 76187536 + 0.5 NA Intergenic Intergenic -476414 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 150-3 chr2 126404309 126404740 + 0.5 NA Intergenic Intergenic -251411 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 137.714-5 chr8 125726806 125727193 + 0.5 NA Intergenic LTR79|LTR|ERVL 224198 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 135.214-5 chr22 29763783 29764133 + 0.5 NA intron (NM_019103, intron 1 of 6) AluJr|SINE|Alu 3022 NM_019103 55954 Hs.713647 NM_019103 ENSG00000100319 ZMAT5 SNRNP20|U11/U12-20K|ZC3H19 zinc finger matrin-type 5 protein-coding 131.786-6 chr5 173092340 173092636 + 0.5 NA TTS (NM_001168393) TTS (NM_001168393) 36136 NM_001168393 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 104.643-4 chr7 6458725 6459077 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -10889 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 170.071 chr1 29076655 29077129 + 0.5 NA intron (NM_001166007, intron 13 of 17) AluJb|SINE|Alu 45609 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 122.929-2 chr2 41150770 41151031 + 0.5 NA Intergenic Intergenic -638465 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 121.929 chr10 111375016 111375297 + 0.5 NA Intergenic Intergenic 260865 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 126.5-5 chr2 80562198 80562766 + 0.5 NA intron (NM_001282599, intron 6 of 11) L1MC5|LINE|L1 249103 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 125.714 chr12 30986002 30986407 + 0.5 NA intron (NM_001370301, intron 6 of 6) intron (NM_001370301, intron 6 of 6) 59300 NM_001370301 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 114.214-5 chr2 66283184 66283658 + 0.5 NA Intergenic Intergenic 74907 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 106.714-10 chr2 75738907 75739188 + 0.5 NA Intergenic L1MA5A|LINE|L1 -28132 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 122.929-3 chr20 16882541 16882915 + 0.5 NA Intergenic L1ME4a|LINE|L1 134375 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 101.357-4 chr16 64254714 64255011 + 0.5 NA Intergenic L2c|LINE|L2 867201 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 146.429-4 chr8 118701147 118701590 + 0.5 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -79405 NM_001101676 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 111.857-14 chr5 56107638 56107979 + 0.5 NA intron (NM_024669, intron 10 of 11) MLT1J|LTR|ERVL-MaLR 112641 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 105.143-15 chr8 81564658 81565101 + 0.5 NA Intergenic L1MA3|LINE|L1 -33489 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 99.8572-6 chr8 14199489 14199874 + 0.5 NA intron (NM_139167, intron 4 of 7) MER11B|LTR|ERVK 569991 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 141.714-5 chr5 152386146 152386574 + 0.5 NA Intergenic MER63A|DNA|hAT-Blackjack 18919 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 107.143-5 chr13 28656450 28656738 + 0.5 NA Intergenic Intergenic -2536 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 106.643-5 chr4 99752069 99752362 + 0.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -64612 NM_001306151 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 121.786-2 chr21 28800074 28800434 + 0.5 NA Intergenic Intergenic 85113 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 126.714-2 chr10 26876949 26877493 + 0.5 NA Intergenic L1M4|LINE|L1 -16134 NM_001178116 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 131-3 chr2 75991954 75992375 + 0.5 NA Intergenic L1M2|LINE|L1 -281249 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 160.429 chr16 89470519 89471043 + 0.5 NA intron (NM_001256182, intron 1 of 13) AluY|SINE|Alu 19780 NM_001256183 29123 Hs.335003 NM_013275 ENSG00000167522 ANKRD11 ANCO-1|ANCO1|LZ16|T13 ankyrin repeat domain 11 protein-coding 139 chr10 79017360 79017876 + 0.5 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 49830 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 108.286 chr1 18734788 18735344 + 0.5 NA intron (NM_001135254, intron 7 of 8) intron (NM_001135254, intron 7 of 8) 104220 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 101.286-7 chr3 4457938 4458238 + 0.5 NA intron (NM_001164674, intron 1 of 7) L1MA7|LINE|L1 9181 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 106.714-11 chr4 38666832 38667313 + 0.5 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -2444 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 119.714-5 chr18 67273272 67273654 + 0.5 NA Intergenic L1PA15|LINE|L1 191879 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 209.571 chr12 16757962 16758646 + 0.5 NA Intergenic Intergenic -150090 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 96.8571-3 chr10 91942840 91943229 + 0.5 NA intron (NM_003972, intron 4 of 37) intron (NM_003972, intron 4 of 37) 19264 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 128.643-2 chr16 54199305 54199743 + 0.5 NA Intergenic Intergenic 71355 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 123.429-5 chr5 149122809 149123244 + 0.5 NA Intergenic L1P2|LINE|L1 -18421 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 150.072 chr1 114457293 114457841 + 0.5 NA intron (NM_015906, intron 4 of 19) MER21-int|LTR|ERVL 53636 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 100.929 chr1 179420476 179420720 + 0.5 NA intron (NR_073544, intron 12 of 25) L1MA4|LINE|L1 54554 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 120.429-11 chr7 38825933 38826338 + 0.5 NA intron (NM_080631, intron 4 of 27) intron (NM_080631, intron 4 of 27) 83056 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 111.214-4 chr15 96530553 96530821 + 0.5 NA Intergenic Intergenic 196922 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 116.214 chr10 61330451 61331089 + 0.5 NA Intergenic Intergenic -121869 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 146.643 chr14 57996150 57996573 + 0.5 NA Intergenic Intergenic -130269 NM_001306087 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 186.643-2 chr6 162898439 162899100 + 0.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 155392 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 125.071-7 chr7 122606505 122606944 + 0.5 NA intron (NM_001167940, intron 6 of 29) L2c|LINE|L2 92393 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 144-3 chr11 115518143 115518738 + 0.5 NA Intergenic MER21B|LTR|ERVL -14025 NM_014333 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 108-2 chr10 88914267 88914532 + 0.5 NA intron (NM_020799, intron 6 of 10) intron (NM_020799, intron 6 of 10) -18285 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 100.643-5 chr9 27153483 27153985 + 0.5 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 44593 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 120.714-3 chr14 29199813 29200188 + 0.5 NA Intergenic L2|LINE|L2 -414213 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 166.286 chr11 71385240 71385910 + 0.5 NA Intergenic LTR85c|LTR|Gypsy? 37779 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 121.357-4 chr2 83965864 83966166 + 0.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -324667 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 125.714-2 chr2 119188184 119188809 + 0.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -29745 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 106.643-7 chr8 125364438 125364676 + 0.5 NA intron (NM_001349486, intron 7 of 7) L2b|LINE|L2 -65801 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 99.9286-3 chr3 194174801 194175067 + 0.5 NA Intergenic AluJb|SINE|Alu 31373 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 126-7 chr16 52123928 52124382 + 0.5 NA Intergenic Intergenic 38874 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 125.857-3 chr4 41576649 41577102 + 0.5 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) -35834 NM_001112719 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 119.429-2 chr14 59918903 59919365 + 0.5 NA promoter-TSS (NM_001355272) promoter-TSS (NM_001355272) -579 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 142.143-2 chr17 74873122 74873705 + 0.5 NA promoter-TSS (NM_004110) promoter-TSS (NM_004110) -419 NM_001258013 2232 Hs.69745 NM_004110 ENSG00000161513 FDXR ADR|ADXR|ANOA ferredoxin reductase protein-coding 114.786 chr10 62094119 62094490 + 0.5 NA 3' UTR (NM_032199, exon 10 of 10) 3' UTR (NM_032199, exon 10 of 10) 44947 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 104.214-5 chr2 17230139 17230460 + 0.5 NA Intergenic Intergenic 288141 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 119.786-4 chr2 43378750 43379140 + 0.5 NA intron (NM_001083953, intron 29 of 37) L1MEi|LINE|L1 151734 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 98.8571-4 chr5 63672932 63673263 + 0.5 NA Intergenic L1PA16|LINE|L1 289195 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 186.571-2 chr14 53453605 53454096 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR 300496 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 100.929-2 chr11 103150439 103150750 + 0.5 NA intron (NM_001377, intron 20 of 88) L2b|LINE|L2 41168 NM_001377 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 129.786-3 chr5 1828983 1829332 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 27411 NR_104602 101929034 Hs.128032 NR_104602 ENSG00000250417 LINC02116 - long intergenic non-protein coding RNA 2116 ncRNA 133.714-5 chr2 117695682 117696176 + 0.5 NA Intergenic Intergenic -118762 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 144.428 chr5 94260724 94261378 + 0.5 NA intron (NM_001145678, intron 20 of 20) AluJr|SINE|Alu -149352 NM_001163418 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 102.643-3 chr13 58004193 58004459 + 0.5 NA Intergenic Intergenic -161501 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 153.5-3 chr12 48161410 48162028 + 0.5 NA Intergenic LTR78|LTR|ERV1 -4204 NM_001319296 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 125.929-4 chr16 68982733 68982999 + 0.5 NA intron (NM_024562, intron 15 of 17) intron (NM_024562, intron 15 of 17) -122787 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 106-4 chr2 147879534 147879877 + 0.5 NA intron (NM_001278579, intron 2 of 11) L2|LINE|L2 34676 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 111.714-2 chr10 68445025 68445326 + 0.5 NA intron (NM_001080449, intron 7 of 20) intron (NM_001080449, intron 7 of 20) 26798 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 120.143-6 chr12 24073534 24073877 + 0.5 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -122673 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 143.786-2 chr15 60263683 60264067 + 0.5 NA Intergenic Intergenic 134111 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 97.8571-7 chr8 114492115 114492392 + 0.5 NA Intergenic Intergenic -1055314 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 119.429-4 chr4 60222093 60222423 + 0.5 NA Intergenic Intergenic -700361 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 164 chr2 111647147 111647518 + 0.5 NA Intergenic L1MB4|LINE|L1 123802 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 100.214 chr10 14365726 14365989 + 0.5 NA Intergenic MIRb|SINE|MIR 17420 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 169.5-2 chrX 95387080 95387833 + 0.5 NA Intergenic L1MA1|LINE|L1 -324230 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 97.9286-4 chr11 10649226 10649437 + 0.5 NA intron (NM_001206881, intron 1 of 18) intron (NM_001206881, intron 1 of 18) 2970 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 122.214-3 chr7 52434742 52435017 + 0.5 NA Intergenic MIR|SINE|MIR -600754 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 201.571-2 chr3 105277600 105278295 + 0.5 NA Intergenic MLT2C2|LTR|ERVL -88766 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 140.572 chr1 65312373 65312928 + 0.5 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 3107 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 116.214-4 chr17 69777692 69777966 + 0.5 NA intron (NR_109972, intron 3 of 4) L1MC4a|LINE|L1 183842 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 124 chr1 80318025 80318406 + 0.5 NA Intergenic Intergenic -217540 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 104.429-9 chr7 107500236 107500588 + 0.5 NA intron (NM_181733, intron 6 of 20) L4_C_Mam|LINE|RTE-X 30355 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 98.7142-2 chr12 769111 769327 + 0.5 NA intron (NM_001184985, intron 1 of 27) AluSz6|SINE|Alu 16296 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 97.2142 chr1 52334310 52334617 + 0.5 NA intron (NM_007324, intron 13 of 17) intron (NM_007324, intron 13 of 17) 31742 NM_001330585 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 120.428-2 chr3 66146298 66146717 + 0.5 NA intron (NM_173471, intron 1 of 10) L1ME4a|LINE|L1 12897 NM_173471 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 111.714 chr1 46552423 46552854 + 0.5 NA promoter-TSS (NM_001322255) promoter-TSS (NM_001322255) -981 NM_001322255 148930 Hs.350764 NM_182516 ENSG00000162456 KNCN Kino|L5 kinocilin protein-coding 131.5-2 chr2 185393 185693 + 0.5 NA Intergenic Intergenic 70797 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 111.143-2 chr2 64831443 64831695 + 0.5 NA Intergenic Intergenic 32062 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 174.071 chr8 28254450 28255081 + 0.5 NA Intergenic Intergenic -62503 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 119.571-6 chr5 80231124 80231627 + 0.5 NA intron (NR_126061, intron 1 of 13) intron (NR_126061, intron 1 of 13) 24673 NM_001174072 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 108.643-8 chr7 43428751 43429133 + 0.5 NA intron (NM_001287059, intron 7 of 27) (ATATAC)n|Simple_repeat|Simple_repeat 93600 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 106.786 chr1 234454074 234454332 + 0.5 NA intron (NM_005646, intron 9 of 29) intron (NM_005646, intron 9 of 29) 24976 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 116.214-3 chr13 75001216 75001466 + 0.5 NA Intergenic AluSc|SINE|Alu 239040 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 97.4286-2 chr11 30057469 30057764 + 0.5 NA Intergenic Intergenic -40586 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 130.571-2 chr12 13372743 13373423 + 0.5 NA non-coding (NR_036555, exon 3 of 3) non-coding (NR_036555, exon 3 of 3) 3662 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 108.928 chr5 2309139 2309381 + 0.5 NA intron (NR_104616, intron 2 of 2) AluSx|SINE|Alu 2941 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 110.857-13 chr7 30429689 30430029 + 0.5 NA intron (NM_006092, intron 12 of 13) AluSc8|SINE|Alu 38974 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 122.071-3 chr3 133122181 133122475 + 0.5 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) -2493 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 138.143-4 chr8 65415884 65416488 + 0.5 NA Intergenic (ACAC)n|Simple_repeat|Simple_repeat 146480 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 108-13 chr3 69352490 69352861 + 0.5 NA intron (NM_015123, intron 1 of 22) intron (NM_015123, intron 1 of 22) 33413 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 111.857-9 chr19 50230980 50231425 + 0.5 NA intron (NM_024729, intron 8 of 40) (CTGCCTC)n|Simple_repeat|Simple_repeat 27574 NM_001077186 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 195.357-2 chr12 123360127 123360894 + 0.5 NA intron (NM_018183, intron 1 of 31) AluSc8|SINE|Alu 4333 NR_107039 102466877 NR_107039 ENSG00000284425 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 129.929-2 chr20 21713629 21714146 + 0.5 NA intron (NM_006192, intron 4 of 4) CpG 8223 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 116.571-3 chr14 38823976 38824401 + 0.5 NA intron (NR_039982, intron 4 of 4) MSTD|LTR|ERVL-MaLR -58408 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 114.714-4 chr5 178002005 178002234 + 0.5 NA Intergenic L1M5|LINE|L1 -5573 NR_149722 653316 Hs.652193 NM_001079527 ENSG00000204677 FAM153CP FAM153C|NY-REN-7-like family with sequence similarity 153 member C pseudo 112-12 chr8 20428427 20428982 + 0.5 NA Intergenic L2c|LINE|L2 -124741 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 103-9 chr9 69394260 69394612 + 0.5 NA Intergenic LTR82B|LTR|ERVL 65111 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 122-7 chr19 30342153 30342459 + 0.5 NA Intergenic Intergenic -30078 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 103.214-9 chr2 174168753 174168959 + 0.5 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 79676 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 124.143-2 chr22 20898552 20898871 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -18696 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 114.071 chr12 30663059 30663663 + 0.5 NA intron (NM_006390, intron 14 of 24) intron (NM_006390, intron 14 of 24) 13883 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 112.929-5 chr2 142189770 142190130 + 0.5 NA Intergenic LTR80B|LTR|ERVL -58249 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 103.929-3 chr10 30937872 30938297 + 0.5 NA intron (NM_001143771, intron 2 of 7) MER5B|DNA|hAT-Charlie 61433 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 104.786-11 chr3 151888624 151888963 + 0.5 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 15150 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 124.429-4 chr7 66654143 66654446 + 0.5 NA promoter-TSS (NM_001367741) promoter-TSS (NM_001367741) -225 NR_110037 100996437 Hs.667408 NR_110037 LOC100996437 - uncharacterized LOC100996437 ncRNA 131.643-2 chr12 127101882 127102295 + 0.5 NA Intergenic AluSc8|SINE|Alu -41691 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 139.429-6 chr4 30210305 30210722 + 0.5 NA Intergenic Intergenic -509856 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 119.786 chr11 77983846 77984371 + 0.5 NA intron (NM_033547, intron 2 of 22) L1MB3|LINE|L1 10560 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 108.857 chr10 69136413 69136790 + 0.5 NA intron (NM_001318944, intron 3 of 9) L1MC5|LINE|L1 12423 NM_001318944 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 151.929-2 chr14 61906165 61906489 + 0.5 NA intron (NM_001367661, intron 2 of 8) AluJr|SINE|Alu -21368 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 128.286-4 chr6 54400415 54400782 + 0.5 NA Intergenic L2a|LINE|L2 92157 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 99.7856-2 chr12 95091185 95091495 + 0.5 NA intron (NM_018351, intron 17 of 20) MamRep434|DNA|TcMar-Tigger -17722 NM_001127362 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 113.071-2 chr11 5326986 5327424 + 0.5 NA Intergenic Intergenic -2853 NM_033180 79345 Hs.680163 NM_033180 ENSG00000279012 OR51B2 HOR5'Beta3|OR51B1P olfactory receptor family 51 subfamily B member 2 (gene/pseudogene) protein-coding 140.714-6 chr6 39654378 39654705 + 0.5 NA intron (NM_001289020, intron 3 of 21) L2|LINE|L2 70867 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 137.429 chr11 106847302 106847660 + 0.5 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 170995 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 104.143-2 chr1 111005624 111006119 + 0.5 NA Intergenic Intergenic -41927 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 117.429-2 chr15 89532942 89533227 + 0.5 NA Intergenic Intergenic -9050 NR_027077 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 143.857-4 chr8 124448750 124449203 + 0.5 NA Intergenic MER51A|LTR|ERV1 -1844 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 123.071-3 chr4 93940056 93940537 + 0.5 NA Intergenic L1PA16|LINE|L1 111543 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 169.143 chr2 125354953 125355418 + 0.5 NA Intergenic AluSx1|SINE|Alu 762800 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 133.143-4 chr2 119893704 119894238 + 0.5 NA intron (NM_002830, intron 9 of 26) MIR|SINE|MIR -119106 NR_138472 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 98.0714-2 chr3 59176072 59176448 + 0.5 NA Intergenic L1MA3|LINE|L1 -126228 NM_001351533 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 101.071-5 chr5 121591557 121591882 + 0.5 NA Intergenic L1PA15|LINE|L1 -260163 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 101.143-13 chr5 133506979 133507306 + 0.5 NA intron (NM_015082, intron 3 of 15) AluSx|SINE|Alu -79436 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 106.143-11 chr7 141378187 141378684 + 0.5 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -172975 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 111.143-7 chr6 39670361 39670683 + 0.5 NA intron (NM_001289020, intron 3 of 21) Tigger2a|DNA|TcMar-Tigger 54886 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 113.071-7 chr5 95377584 95378038 + 0.5 NA Intergenic Intergenic -13555 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 124.357 chr15 57730474 57730975 + 0.5 NA Intergenic AluY|SINE|Alu 24010 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 111.786-2 chr16 7710624 7711064 + 0.5 NA 3' UTR (NM_001142334, exon 14 of 14) 3' UTR (NM_001142334, exon 14 of 14) 377999 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 124.143-4 chr5 24528432 24528882 + 0.5 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 116321 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 111.357 chr1 176909315 176909722 + 0.5 NA intron (NM_207108, intron 16 of 21) intron (NM_207108, intron 16 of 21) 119927 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 140.429-4 chr12 122479638 122480163 + 0.5 NA intron (NM_001350938, intron 8 of 10) intron (NM_001350938, intron 8 of 10) 21032 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 147.214-2 chr16 76074523 76074904 + 0.5 NA Intergenic AluSx1|SINE|Alu -202688 NM_001322179 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 98.1429-5 chr8 101946203 101946518 + 0.5 NA intron (NM_001040624, intron 3 of 7) L2b|LINE|L2 -38072 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 122.572-2 chr5 41502463 41502898 + 0.5 NA intron (NM_001005473, intron 1 of 2) L2|LINE|L2 7921 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 130.071-4 chr2 70850613 70851185 + 0.5 NA Intergenic Intergenic -15083 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 102.357-2 chr18 61126136 61126420 + 0.5 NA Intergenic AluSx|SINE|Alu -207152 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 110.929 chr10 61984475 61984974 + 0.5 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) -64633 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 108-7 chr14 53996816 53997173 + 0.5 NA Intergenic MIRb|SINE|MIR -40103 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 99.3571 chr14 97705231 97705615 + 0.5 NA Intergenic Intergenic -18765 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 141.714-6 chr5 154254644 154255398 + 0.5 NA intron (NM_198321, intron 1 of 11) FLAM_C|SINE|Alu 64288 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 128.714-2 chr18 63446530 63447002 + 0.5 NA Intergenic Intergenic -24290 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 121.143-3 chr3 134831885 134832220 + 0.5 NA intron (NM_004441, intron 1 of 15) MER53|DNA|hAT 36792 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 103.429-8 chr4 156625461 156625851 + 0.5 NA Intergenic Intergenic 346143 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 97.0714-7 chr4 30795504 30795923 + 0.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 75344 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 108.071-3 chr4 101260685 101261094 + 0.5 NA intron (NM_001130691, intron 1 of 12) Tigger19b|DNA|TcMar-Tigger -20017 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 97.2857-2 chr15 66769747 66770037 + 0.5 NA intron (NR_027654, intron 4 of 4) AluSx1|SINE|Alu 67656 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 134.786-2 chr14 45984036 45984502 + 0.5 NA Intergenic L1MA7|LINE|L1 -79890 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 113.857-6 chr2 167619906 167620246 + 0.5 NA Intergenic L2a|LINE|L2 -198596 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 136.714-6 chr14 96998150 96998605 + 0.5 NA Intergenic Intergenic 54798 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 103.857-7 chr4 36873469 36873913 + 0.5 NA Intergenic L2b|LINE|L2 -128088 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 108.071-4 chr5 27366007 27366242 + 0.5 NA Intergenic L1MC2|LINE|L1 -106168 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 173.857-5 chr6 74178852 74179338 + 0.5 NA intron (NR_110856, intron 1 of 3) L1PA10|LINE|L1 109644 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 125.072 chr1 246245961 246246381 + 0.5 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 171241 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 116.929-6 chr8 126102959 126103335 + 0.5 NA Intergenic Intergenic -151950 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 123.928 chr1 162479441 162479846 + 0.5 NA Intergenic L1MA3|LINE|L1 -17531 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 126.857-2 chr10 61449108 61449382 + 0.5 NA intron (NR_134508, intron 1 of 6) intron (NR_134508, intron 1 of 6) -3394 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 103.214-12 chr3 122715068 122715478 + 0.5 NA intron (NM_017554, intron 12 of 16) intron (NM_017554, intron 12 of 16) 34434 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 114.643-9 chr6 165578592 165578880 + 0.5 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 83364 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 108.286-10 chr15 96098946 96099229 + 0.5 NA intron (NR_158193, intron 6 of 7) intron (NR_158193, intron 6 of 7) 28754 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 123.214-3 chr5 98969395 98969790 + 0.5 NA intron (NR_151718, intron 1 of 3) intron (NR_151718, intron 1 of 3) -39878 NR_157078 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 113.071 chr1 247020388 247020802 + 0.5 NA intron (NR_037894, intron 1 of 6) L1PA10|LINE|L1 -12538 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 136.214 chr10 24175780 24176150 + 0.5 NA intron (NM_001098500, intron 2 of 18) LTR12C|LTR|ERV1 -32826 NM_001282768 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 120.571-4 chr5 43217920 43218344 + 0.5 NA intron (NR_072980, intron 1 of 3) AluSx1|SINE|Alu 25280 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 124-3 chr12 1032342 1032640 + 0.5 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 4743 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 156.5-2 chr14 52977425 52977835 + 0.5 NA Intergenic L1MB3|LINE|L1 -26533 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 115.071-3 chr14 69780480 69780758 + 0.5 NA intron (NM_003049, intron 2 of 4) intron (NM_003049, intron 2 of 4) -12906 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 101.5-6 chr20 10734267 10734523 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -18695 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 116.286-5 chr7 77859687 77859978 + 0.5 NA intron (NM_001366089, intron 2 of 18) AluJb|SINE|Alu 19702 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 191.857 chr14 61306379 61307032 + 0.5 NA Intergenic Intergenic -14738 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 97.2858-4 chr8 103726472 103726879 + 0.5 NA intron (NM_001348496, intron 3 of 23) L1ME2|LINE|L1 -92545 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 209.643-2 chr15 89672988 89673602 + 0.5 NA exon (NM_002666, exon 3 of 9) exon (NM_002666, exon 3 of 9) 6072 NM_002666 5346 Hs.103253 NM_002666 ENSG00000166819 PLIN1 FPLD4|PERI|PLIN perilipin 1 protein-coding 129.143-2 chr16 78250875 78251152 + 0.5 NA intron (NM_001291997, intron 4 of 7) LTR32|LTR|ERVL 151359 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 127.286-4 chr3 138236491 138236823 + 0.5 NA intron (NM_001282342, intron 5 of 19) intron (NM_001282342, intron 5 of 19) 49126 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 100.928 chr3 17564767 17565179 + 0.5 NA intron (NM_001349089, intron 1 of 20) intron (NM_001349089, intron 1 of 20) 135047 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 109.929-5 chr3 109297604 109297823 + 0.5 NA intron (NM_138815, intron 8 of 8) L1MC2|LINE|L1 18804 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 99-3 chr3 31436958 31437246 + 0.5 NA Intergenic Intergenic -95823 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 133.571-4 chr3 98708476 98708858 + 0.5 NA Intergenic LTR30|LTR|ERV1 -23569 NM_001323359 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 97.0714-2 chr1 114833999 114834379 + 0.5 NA Intergenic Intergenic -20614 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 118.071-10 chr5 137564285 137564532 + 0.5 NA Intergenic Intergenic -65082 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 130.928-2 chr5 29793645 29794105 + 0.5 NA Intergenic Intergenic -86685 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 143.429-7 chr7 17513112 17513510 + 0.5 NA intron (NR_110013, intron 1 of 3) L1M4|LINE|L1 45598 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 165 chr10 97307946 97308488 + 0.5 NA Intergenic Intergenic -11054 NM_005479 10023 Hs.126057 NM_005479 ENSG00000165879 FRAT1 - FRAT regulator of WNT signaling pathway 1 protein-coding 116.786-6 chr4 42094222 42094601 + 0.5 NA Intergenic Intergenic 58244 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 110.786-2 chr14 43161768 43162118 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 1345340 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 148.286 chr1 8808183 8808510 + 0.5 NA intron (NM_012102, intron 1 of 23) intron (NM_012102, intron 1 of 23) 9294 NM_012102 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 146.857-5 chr4 97194718 97195195 + 0.5 NA Intergenic Intergenic -171970 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 132.571-5 chr2 29031109 29031568 + 0.5 NA intron (NM_001321538, intron 13 of 18) intron (NM_001321538, intron 13 of 18) 43185 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 123.643 chr3 127176157 127176504 + 0.5 NA Intergenic Intergenic -16801 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 126.786-3 chr2 54869663 54869959 + 0.5 NA intron (NM_001039753, intron 14 of 40) intron (NM_001039753, intron 14 of 40) 140461 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 112.929-10 chr8 133745553 133746155 + 0.5 NA Intergenic Intergenic 31498 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 97.7143-3 chr14 64538260 64538579 + 0.5 NA intron (NR_110550, intron 1 of 3) intron (NR_110550, intron 1 of 3) 1949 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 138.5-4 chr3 148527351 148527723 + 0.5 NA Intergenic L1P4|LINE|L1 -170334 NM_000685 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 133-2 chr10 6159581 6160059 + 0.5 NA intron (NM_001282630, intron 1 of 14) AluJb|SINE|Alu -7558 NR_039698 100628560 NR_039698 ENSG00000283634 MIR3155B hsa-mir-3155b microRNA 3155b ncRNA 132.571-2 chr13 20734539 20735008 + 0.5 NA intron (NR_134934, intron 2 of 3) intron (NR_134934, intron 2 of 3) 31430 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 124.786 chr2 62288191 62288513 + 0.5 NA Intergenic Intergenic 72831 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 129-5 chr7 34062879 34063205 + 0.5 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 157503 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 136.357 chr11 46911745 46912154 + 0.5 NA intron (NM_002334, intron 1 of 37) AluSz|SINE|Alu 6601 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 102.286-5 chr19 50654661 50654898 + 0.5 NA intron (NM_001195076, intron 1 of 4) AluJr|SINE|Alu 5334 NM_001195076 342918 Hs.531650 NM_001195076 ENSG00000235034 C19orf81 - chromosome 19 open reading frame 81 protein-coding 96.9286-2 chr14 57320408 57320876 + 0.5 NA Intergenic Intergenic 51671 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 100.929-8 chr5 114222753 114223026 + 0.5 NA Intergenic Intergenic -139181 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 126.786-5 chr2 147836906 147837326 + 0.5 NA Intergenic L2c|LINE|L2 -7401 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 119.643-4 chr8 106967026 106967361 + 0.5 NA Intergenic L1ME3F|LINE|L1 -196949 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 116.071-3 chr21 35772070 35772458 + 0.5 NA Intergenic Intergenic 51549 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 128.143-6 chr8 74241007 74241321 + 0.5 NA intron (NM_020647, intron 4 of 5) intron (NM_020647, intron 4 of 5) 80197 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 96.7857-3 chr10 26705509 26705808 + 0.5 NA intron (NM_001321978, intron 4 of 9) AluSx|SINE|Alu 7957 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 127.857-8 chr6 90502891 90503292 + 0.5 NA Intergenic Intergenic 83981 NM_003188 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 134.571-11 chr5 4707615 4708109 + 0.5 NA Intergenic Charlie24|DNA|hAT-Charlie -65619 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 121.214-4 chr5 39752774 39753128 + 0.5 NA Intergenic Intergenic 232520 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 109.643-3 chr14 68369017 68369297 + 0.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 259630 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 133.143-2 chr1 181956194 181956590 + 0.5 NA Intergenic L1PA7|LINE|L1 105320 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 158.429-2 chr8 104061304 104061917 + 0.5 NA intron (NM_001348499, intron 19 of 23) L1ME4a|LINE|L1 -161725 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 115.429-8 chr8 96684271 96684614 + 0.5 NA intron (NM_016134, intron 1 of 7) L1MA4|LINE|L1 39200 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 139.214-2 chr5 57102543 57103026 + 0.5 NA Intergenic L1MC4|LINE|L1 -71164 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 129-2 chr15 85622822 85623319 + 0.5 NA intron (NM_001270546, intron 1 of 28) intron (NM_001270546, intron 1 of 28) 3120 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 105.5-5 chr7 131677993 131678497 + 0.5 NA Intergenic L1MEd|LINE|L1 -121617 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 106.357 chr1 231452510 231452728 + 0.5 NA Intergenic L1MA6|LINE|L1 23906 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 97.7142-3 chr2 217497360 217497569 + 0.5 NA intron (NR_026597, intron 2 of 12) MER72B|LTR|ERV1 214731 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 158.286-3 chr5 118324947 118325446 + 0.5 NA Intergenic Intergenic 42622 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 121.286-3 chr12 26484384 26484747 + 0.5 NA intron (NM_002223, intron 41 of 56) L1MC|LINE|L1 288992 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 121.643-2 chr4 30276105 30276388 + 0.5 NA Intergenic Intergenic -444123 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 143.857 chr18 9913443 9913928 + 0.5 NA promoter-TSS (NM_003574) promoter-TSS (NM_003574) -331 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 133.071-2 chr4 31125185 31125577 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -45763 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 127.929-7 chr8 115692875 115693182 + 0.5 NA Intergenic Intergenic -24053 NM_014112 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 163.643-2 chr11 111040927 111041426 + 0.5 NA Intergenic L1MA7|LINE|L1 56142 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 131.643-4 chr7 7047338 7047640 + 0.5 NA Intergenic MER106A|DNA|hAT-Charlie 19556 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 98.6428 chr7 39576812 39577079 + 0.5 NA intron (NM_001282446, intron 2 of 2) AluSq2|SINE|Alu 10541 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 97.6428-2 chr8 71143492 71143703 + 0.5 NA Intergenic L1ME1|LINE|L1 213109 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 171.571 chr5 95459707 95460262 + 0.5 NA Intergenic AluYc3|SINE|Alu 68618 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 111.428-2 chr16 72974809 72975154 + 0.5 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 73147 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 150.071 chr2 186526849 186527684 + 0.5 NA Intergenic L1MB2|LINE|L1 41006 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 154.214 chr22 36387930 36388612 + 0.5 NA promoter-TSS (NM_002473) promoter-TSS (NM_002473) -204 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 146.786-7 chr9 71560739 71561233 + 0.5 NA Intergenic AluY|SINE|Alu -114015 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 141.786-2 chr11 30728055 30728379 + 0.5 NA Intergenic Intergenic -141864 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 142.357 chr14 55927156 55927554 + 0.5 NA Intergenic Intergenic -130681 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 132.357-4 chr7 21580267 21580781 + 0.5 NA intron (NM_001277115, intron 8 of 81) MLT1A0|LTR|ERVL-MaLR 37485 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 144.214-4 chr8 79546078 79546559 + 0.5 NA Intergenic L1M1|LINE|L1 -64799 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 128.643 chr12 7018524 7018897 + 0.5 NA promoter-TSS (NM_005768) promoter-TSS (NM_005768) -234 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 136.5-2 chr15 86648815 86649201 + 0.5 NA intron (NM_152336, intron 22 of 24) L2a|LINE|L2 -283872 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 99.0714 chr5 97054127 97054455 + 0.5 NA Intergenic L1PB1|LINE|L1 88320 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 125.571-12 chr7 31266722 31267091 + 0.5 NA Intergenic L1ME3A|LINE|L1 73820 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 96.8571-5 chr5 149574685 149575012 + 0.5 NA Intergenic L2|LINE|L2 -6650 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 109.786-2 chr10 100104653 100105233 + 0.5 NA Intergenic L1MB7|LINE|L1 -23074 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 131.857-10 chr8 137937790 137938093 + 0.5 NA intron (NR_161374, intron 2 of 7) L2c|LINE|L2 145604 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 113.786-11 chr9 86892552 86892888 + 0.5 NA Intergenic Intergenic 54786 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 128.714-5 chr4 124433659 124434116 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 124547 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 113.357-6 chr5 83391682 83392039 + 0.5 NA Intergenic Intergenic -79814 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 138.643-2 chr10 61280705 61281065 + 0.5 NA Intergenic Intergenic -171754 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 160.286-3 chr13 62355829 62356484 + 0.5 NA Intergenic L1MEc|LINE|L1 32499 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 102.143-6 chr16 72714763 72715040 + 0.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -49931 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 133.428-3 chr2 150654458 150654895 + 0.5 NA Intergenic Intergenic 25779 NR_110245 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 117.357-4 chr6 37611813 37612117 + 0.5 NA Intergenic Intergenic -56543 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 96.5-4 chr6 27029758 27030019 + 0.5 NA Intergenic Intergenic -9582 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 161.143-3 chr10 20375462 20376049 + 0.5 NA Intergenic L1ME1|LINE|L1 -176215 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 116.929-3 chr2 117370706 117371278 + 0.5 NA Intergenic LTR8|LTR|ERV1 -443699 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 106.357-6 chr8 117955963 117956474 + 0.5 NA intron (NM_000127, intron 1 of 10) MIR3|SINE|MIR -35305 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 114.929-2 chr7 5523368 5523808 + 0.5 NA intron (NR_126168, intron 3 of 3) AluJr|SINE|Alu 7013 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 131.714-2 chr5 42462762 42463282 + 0.5 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 38041 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 117.357-2 chr14 85630741 85631040 + 0.5 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 97541 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 135.929 chr11 114470083 114470559 + 0.5 NA Intergenic L1ME1|LINE|L1 30854 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 103.5-7 chr14 42818163 42818601 + 0.5 NA Intergenic Intergenic 1211526 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 96.9285-3 chr8 117743460 117743926 + 0.5 NA Intergenic Intergenic 177220 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 110.429 chr1 11454683 11455083 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -24272 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 124.429 chr10 50545485 50545747 + 0.5 NA intron (NM_147156, intron 2 of 10) AluSx1|SINE|Alu 78340 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 161.214-2 chr8 27837285 27837816 + 0.5 NA intron (NM_001278945, intron 1 of 7) intron (NM_001278945, intron 1 of 7) 267 NM_001363040 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 136.071-3 chr12 41996454 41996818 + 0.5 NA Intergenic Intergenic 148238 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 129.5-3 chr4 170869515 170869962 + 0.5 NA Intergenic L2|LINE|L2 -126003 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 100.643-4 chr3 98001950 98002347 + 0.5 NA intron (NM_001105580, intron 7 of 9) intron (NM_001105580, intron 7 of 9) -29697 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 108.643-5 chr5 42369559 42369976 + 0.5 NA Intergenic Intergenic -53672 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 133.786-2 chr3 103027170 103027682 + 0.5 NA Intergenic Intergenic 496690 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 151.786-3 chr8 62672658 62673156 + 0.5 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -304954 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 124-4 chr14 23098512 23098819 + 0.5 NA TTS (NM_001354640) TTS (NM_001354640) -3051 NM_014977 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 100.857-3 chr1 190987252 190987637 + 0.5 NA Intergenic Intergenic 241054 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 103.143-3 chr11 104750433 104750822 + 0.5 NA Intergenic Intergenic -141325 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 101.5-5 chr2 191468297 191468626 + 0.5 NA Intergenic L2c|LINE|L2 -209611 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 149.071 chr1 101934685 101935061 + 0.5 NA intron (NM_058170, intron 1 of 5) L1PA14|LINE|L1 62361 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 126.5-2 chr12 62874517 62875003 + 0.5 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 60390 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 213 chr14 70789400 70789867 + 0.5 NA intron (NM_033141, intron 2 of 12) MIRb|SINE|MIR -6181 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 108.929-5 chr4 5348619 5348878 + 0.5 NA intron (NM_001306082, intron 5 of 12) L1MA4A|LINE|L1 -175821 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 111-9 chr5 97420133 97420457 + 0.5 NA Intergenic Intergenic -84401 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 112.571-6 chr15 46718147 46718513 + 0.5 NA Intergenic Intergenic -465759 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 145.643 chr14 68103594 68103927 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 280168 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 135.643-2 chr8 102547245 102547705 + 0.5 NA Intergenic Intergenic -4114 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 111.929-2 chr2 9134310 9134640 + 0.5 NA Intergenic LTR48B|LTR|ERV1 -72290 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 128.357 chr14 60288938 60289426 + 0.5 NA TTS (NM_177951) TTS (NM_177951) -34014 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 149.071-2 chr16 68111563 68111927 + 0.5 NA intron (NM_004555, intron 1 of 10) L1PA10|LINE|L1 26375 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 106.286-7 chr6 73031437 73031815 + 0.5 NA intron (NM_001160132, intron 2 of 13) intron (NM_001160132, intron 2 of 13) -63873 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 107.643-4 chr18 22858342 22858609 + 0.5 NA Intergenic Intergenic -71638 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 100.143-7 chr2 105239546 105239863 + 0.5 NA Intergenic L2c|LINE|L2 -2039 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 105.571 chr1 117730686 117731007 + 0.5 NA Intergenic L1M5|LINE|L1 124798 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 120.572 chr16 46657576 46657995 + 0.5 NA 3' UTR (NM_018206, exon 17 of 17) 3' UTR (NM_018206, exon 17 of 17) 31393 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35 retromer complex component protein-coding 104.571-9 chr18 79393866 79394243 + 0.5 NA Intergenic CpG -1876 NM_006162 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 115.857-3 chr11 43029531 43029788 + 0.5 NA Intergenic Intergenic 239710 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 100.571-7 chr3 193919107 193919565 + 0.5 NA Intergenic Intergenic 74902 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 186.286 chr4 73103401 73103996 + 0.5 NA intron (NM_032217, intron 24 of 33) Charlie2a|DNA|hAT-Charlie -33939 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 132.357-5 chr7 45416252 45416724 + 0.5 NA Intergenic Intergenic -157652 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 137.5-2 chr22 46471578 46472130 + 0.5 NA intron (NM_014246, intron 1 of 34) L1MC3|LINE|L1 65766 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 110.143-12 chr7 34447946 34448275 + 0.5 NA intron (NR_033665, intron 2 of 3) L1PA16|LINE|L1 -210108 NM_207172 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 103.786-2 chr14 29799404 29799893 + 0.5 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 127448 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 96.5714-7 chr8 62247133 62247558 + 0.5 NA Intergenic Intergenic -1509 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 105.786-6 chr21 24371591 24371821 + 0.5 NA Intergenic Intergenic -50329 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 135.714-3 chr17 71195114 71195626 + 0.5 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 6809 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 126.429-2 chr14 85577288 85577875 + 0.5 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 44232 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 126.714-6 chr5 114786571 114786891 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -13318 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 166.286-4 chr5 15902562 15903011 + 0.5 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -32396 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 132.5-2 chr10 97718397 97718855 + 0.5 NA TTS (NM_031484) TTS (NM_031484) 4896 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 162.643 chr10 89084687 89085096 + 0.5 NA Intergenic L1ME3F|LINE|L1 -21480 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 100.571-8 chr5 106277469 106277745 + 0.5 NA Intergenic Intergenic 733407 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 102.786-5 chr21 30673784 30674001 + 0.5 NA Intergenic Intergenic 31028 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 109.214-2 chr14 72351644 72351988 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -165004 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 117.071-3 chr14 73782435 73782679 + 0.5 NA intron (NM_001043318, intron 1 of 11) AluJo|SINE|Alu 4651 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 153.214-2 chr11 60909016 60909475 + 0.5 NA Intergenic LTR48|LTR|ERV1 -2660 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 151.643 chr1 190655418 190656087 + 0.5 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 30862 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 106.429-5 chr21 18839178 18839542 + 0.5 NA Intergenic L1PA16|LINE|L1 -79548 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 123.357-2 chr15 90857147 90857418 + 0.5 NA Intergenic FLAM_C|SINE|Alu -11306 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 97.3571 chr7 49291855 49292227 + 0.5 NA Intergenic MLT2A2|LTR|ERVL 367494 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 103.214-11 chr3 106954033 106954397 + 0.5 NA Intergenic L1MD1|LINE|L1 286423 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 135.071-5 chr8 26851695 26852003 + 0.5 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 13806 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 138.357-6 chr5 104550950 104551398 + 0.5 NA Intergenic L1ME4a|LINE|L1 -548300 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 109.5-6 chr3 37677149 37677514 + 0.5 NA intron (NM_002207, intron 17 of 27) intron (NM_002207, intron 17 of 27) 184449 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 187.786-2 chr8 24365000 24365628 + 0.5 NA intron (NR_125808, intron 3 of 5) intron (NR_125808, intron 3 of 5) -18971 NM_014479 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 107.643-3 chr14 52327233 52327705 + 0.5 NA 3' UTR (NM_000956, exon 2 of 2) 3' UTR (NM_000956, exon 2 of 2) 13157 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 98.0714-3 chr9 103113290 103113598 + 0.5 NA Intergenic Intergenic 118111 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 176.714 chr14 67141160 67141677 + 0.5 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -48022 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 145.428 chr8 97678000 97678454 + 0.5 NA intron (NM_001363139, intron 2 of 9) Charlie7|DNA|hAT-Charlie 34043 NM_001363136 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 102.429-2 chr15 71162077 71162588 + 0.5 NA intron (NM_024817, intron 2 of 16) L1MA6|LINE|L1 20883 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 109.071-2 chr14 71723302 71723669 + 0.5 NA intron (NM_001354286, intron 18 of 24) intron (NM_001354286, intron 18 of 24) 137187 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 97.5-2 chr10 16415732 16416024 + 0.5 NA Intergenic Intergenic -21065 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 97.7857-6 chr6 82818052 82818416 + 0.5 NA Intergenic L2|LINE|L2 247607 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 146.786-6 chr7 53466517 53466932 + 0.5 NA Intergenic Intergenic 345207 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 158.571-2 chr3 177121566 177121985 + 0.5 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 74703 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 112.286-8 chr2 4602969 4603228 + 0.5 NA Intergenic Intergenic 53124 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 139.429-4 chr21 30451506 30452028 + 0.5 NA Intergenic Intergenic 11488 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 111.857-10 chr3 20908477 20908716 + 0.5 NA Intergenic L1ME2|LINE|L1 -497130 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 174 chr2 154415690 154416229 + 0.5 NA intron (NM_052917, intron 11 of 12) intron (NM_052917, intron 11 of 12) 41479 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 156.143-9 chr8 121407278 121407787 + 0.5 NA Intergenic Intergenic -231814 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 150.286 chr7 2572984 2573363 + 0.5 NA intron (NM_001287501, intron 3 of 19) intron (NM_001287501, intron 3 of 19) 14194 NM_001287499 23288 Hs.520627 NM_152558 ENSG00000106012 IQCE 1700028P05Rik|PAPA7 IQ motif containing E protein-coding 141.857-3 chr17 35402671 35403035 + 0.5 NA Intergenic L1MDa|LINE|L1 -29232 NM_152270 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 102-6 chr3 13511805 13512107 + 0.5 NA Intergenic MER6A|DNA|TcMar-Tigger 31650 NM_001330636 79885 Hs.744132 NM_024827 ENSG00000163517 HDAC11 HD11 histone deacetylase 11 protein-coding 109.214-3 chr17 29013158 29013531 + 0.5 NA Intergenic MIRb|SINE|MIR -6904 NM_001290202 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 123.5 chr1 85897191 85897606 + 0.5 NA intron (NR_146344, intron 28 of 58) L1PA11|LINE|L1 -188965 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 134.643-3 chr12 76579887 76580272 + 0.5 NA Intergenic AluSz|SINE|Alu -20308 NM_001003712 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 112-11 chr6 137690870 137691294 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 25436 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 97.643-2 chr10 108552644 108553036 + 0.5 NA Intergenic L1MC1|LINE|L1 -483547 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 124.714-3 chr10 75642883 75643236 + 0.5 NA intron (NM_001305581, intron 2 of 6) MLT1G3|LTR|ERVL-MaLR -4450 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 103.857 chr1 115663404 115663837 + 0.5 NA intron (NM_001172412, intron 3 of 7) intron (NM_001172412, intron 3 of 7) 20991 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 140.143-2 chr5 106640724 106641189 + 0.5 NA Intergenic Intergenic 370058 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 136.714-9 chr4 133941611 133942122 + 0.5 NA Intergenic Intergenic 259923 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 106.429-11 chr8 110656209 110656614 + 0.5 NA Intergenic L1PA17|LINE|L1 371022 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 110 chr3 66711644 66711923 + 0.5 NA Intergenic AluSx|SINE|Alu 26553 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 111.643-2 chr17 47428146 47428410 + 0.5 NA intron (NM_001195192, intron 21 of 21) HAL1|LINE|L1 64342 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 97.0714-9 chr6 24194156 24194674 + 0.5 NA intron (NM_016356, intron 8 of 9) intron (NM_016356, intron 8 of 9) 68200 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 121.429-2 chr18 6991813 6992187 + 0.5 NA intron (NM_005559, intron 36 of 62) intron (NM_005559, intron 36 of 62) 37323 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 103.071-7 chr2 56511548 56511956 + 0.5 NA Intergenic Intergenic -325982 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 159.786-2 chr8 41954518 41954936 + 0.5 NA intron (NM_001305878, intron 9 of 13) MIR|SINE|MIR -57986 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 121.357 chr1 34986773 34987075 + 0.5 NA 3' UTR (NM_007167, exon 16 of 16) 3' UTR (NM_007167, exon 16 of 16) -1577 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 TMEM35B ZMYM6NB transmembrane protein 35B protein-coding 106.714-5 chr11 92229027 92229444 + 0.5 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 4201 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 167 chr4 72155215 72155606 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 116278 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 101.571-2 chr12 24307087 24307425 + 0.5 NA intron (NM_152989, intron 3 of 17) MIRb|SINE|MIR 83985 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 104.071-2 chr3 95499249 95499593 + 0.5 NA Intergenic L1MEc|LINE|L1 183772 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 100.714-5 chr14 61574319 61574633 + 0.5 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -3823 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 132.643-4 chr6 156030393 156030938 + 0.5 NA Intergenic Intergenic 83868 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 139.143-7 chr4 186346946 186347344 + 0.5 NA intron (NR_033900, intron 1 of 3) intron (NR_033900, intron 1 of 3) 80956 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 133.429 chr1 35655866 35656254 + 0.5 NA Intergenic MIR|SINE|MIR -14534 NM_002794 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 123.5-2 chr11 73471041 73471395 + 0.5 NA intron (NM_001286051, intron 1 of 5) MIRb|SINE|MIR 94550 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 119.929-4 chr2 17415616 17416002 + 0.5 NA Intergenic L1MC5a|LINE|L1 102631 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 113.357-2 chr14 56167001 56167263 + 0.5 NA intron (NM_021255, intron 1 of 5) L1MA1|LINE|L1 48721 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 96.6429-7 chr6 155815382 155815680 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR -131266 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 124.571-2 chr15 35476082 35476578 + 0.5 NA intron (NM_080650, intron 3 of 8) intron (NM_080650, intron 3 of 8) 69835 NM_001141972 89978 Hs.107196 NM_080650 ENSG00000134146 DPH6 ATPBD4 diphthamine biosynthesis 6 protein-coding 106.214-5 chr6 36137188 36137509 + 0.5 NA intron (NM_002754, intron 8 of 11) AluY|SINE|Alu 6835 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 116.643 chr1 189712963 189713361 + 0.5 NA Intergenic L1PA15|LINE|L1 762848 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 116.071 chr1 181580706 181581093 + 0.5 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 97382 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 107.214-5 chr8 130600598 130600836 + 0.5 NA Intergenic Intergenic -157043 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 107.143-12 chr22 40949076 40949444 + 0.5 NA Intergenic Intergenic -2118 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 121.5-5 chr8 54767098 54767434 + 0.5 NA Intergenic MIR|SINE|MIR 151170 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 133-8 chr6 11403061 11403519 + 0.5 NA Intergenic L2a|LINE|L2 -20942 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 99.6429-2 chr19 28935823 28936126 + 0.5 NA Intergenic MIRc|SINE|MIR -29157 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 112.286-6 chr17 55055816 55056157 + 0.5 NA intron (NM_178509, intron 12 of 17) L2a|LINE|L2 -87201 NM_001162861 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 140.214 chr1 163332824 163333328 + 0.5 NA intron (NM_145697, intron 5 of 13) L1MEc|LINE|L1 11122 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 144.429-5 chr6 68465553 68466183 + 0.5 NA Intergenic Intergenic -135969 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 101.929-3 chr6 42080902 42081158 + 0.5 NA 3' UTR (NM_138572, exon 9 of 9) 3' UTR (NM_138572, exon 9 of 9) 30506 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 112.429-9 chr7 7175052 7175695 + 0.5 NA Intergenic L1MB4|LINE|L1 -7242 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 99-4 chr6 123722454 123722705 + 0.5 NA Intergenic LTR16A1|LTR|ERVL -81267 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 112.786-2 chr14 69987182 69987614 + 0.5 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 9265 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 138.071-4 chr7 4860148 4860457 + 0.5 NA exon (NM_020144, exon 1 of 1) exon (NM_020144, exon 1 of 1) 1728 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 151.429 chr1 51270658 51270981 + 0.5 NA intron (NM_014372, intron 2 of 2) intron (NM_014372, intron 2 of 2) 27142 NM_001297666 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 119.714-14 chr7 16046020 16046370 + 0.5 NA Intergenic Intergenic -164291 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 165.857 chr11 40497960 40498614 + 0.5 NA intron (NM_020929, intron 2 of 4) MIR3|SINE|MIR -205157 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 119.5-2 chr5 132366248 132366614 + 0.5 NA promoter-TSS (NR_037500) promoter-TSS (NR_037500) -832 NR_037500 100500865 NR_037500 ENSG00000263597 MIR3936 mir-3936 microRNA 3936 ncRNA 122.214 chr1 70501664 70502103 + 0.5 NA Intergenic MER21C|LTR|ERVL 90615 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 117.429-5 chr8 129047451 129047978 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -81713 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 147.571-4 chr22 25598778 25599174 + 0.5 NA intron (NM_001362778, intron 1 of 19) L1M4|LINE|L1 34301 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 102.143-12 chr8 124174398 124174609 + 0.5 NA Intergenic AluSx1|SINE|Alu -2981 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 116.143-11 chr8 126061776 126062079 + 0.5 NA Intergenic L1M4b|LINE|L1 -110730 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 104.929-8 chr8 137109636 137109988 + 0.5 NA Intergenic Intergenic 303776 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 133-10 chr9 26486991 26487456 + 0.5 NA Intergenic L1MA1|LINE|L1 405579 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 101.643-4 chr10 108472140 108472402 + 0.5 NA Intergenic Intergenic -402978 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 120.5-2 chr2 121511976 121512588 + 0.5 NA intron (NM_015282, intron 7 of 38) intron (NM_015282, intron 7 of 38) -18598 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 107.286-7 chr6 155878063 155878326 + 0.5 NA Intergenic Intergenic -68603 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 98.4286-2 chr10 82880267 82880490 + 0.5 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -647458 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 128.714 chr18 59988249 59988579 + 0.5 NA Intergenic Intergenic 88418 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 168.643 chr10 123636493 123637130 + 0.5 NA Intergenic Intergenic -29544 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 124.571-9 chr9 91420770 91421118 + 0.5 NA intron (NM_001290000, intron 1 of 1) intron (NM_001290000, intron 1 of 1) 2888 NM_005384 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 103.643 chr11 23006638 23006969 + 0.5 NA Intergenic Intergenic -146329 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 117-6 chr2 98673333 98673616 + 0.5 NA intron (NM_012214, intron 4 of 15) intron (NM_012214, intron 4 of 15) -10001 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 102.357-3 chr2 102248964 102249306 + 0.5 NA Intergenic Intergenic 61821 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 135.786 chr10 21998196 21998654 + 0.5 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 5305 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 121.714-4 chr3 19049253 19049714 + 0.5 NA Intergenic AluY|SINE|Alu -99027 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 109-4 chr19 35985946 35986505 + 0.5 NA Intergenic Intergenic -8963 NM_001042631 644096 Hs.356460 NM_001042631 ENSG00000205138 SDHAF1 LYRM8 succinate dehydrogenase complex assembly factor 1 protein-coding 104-3 chr14 87700244 87700503 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -45079 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 155.214-4 chr8 140977692 140978027 + 0.5 NA intron (NM_001352719, intron 1 of 32) L1ME3D|LINE|L1 23145 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 105.143-12 chr5 84266763 84267087 + 0.5 NA intron (NM_001278642, intron 1 of 9) MIR|SINE|MIR 117942 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 99.2857-3 chr2 50171886 50172102 + 0.5 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 175760 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 162.643-3 chr18 3170169 3170634 + 0.5 NA intron (NM_019856, intron 8 of 36) L1MA4|LINE|L1 49567 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 147.786-4 chr8 134462672 134463009 + 0.5 NA Intergenic Intergenic -135231 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 106.643-6 chr6 53080554 53081018 + 0.5 NA intron (NM_033481, intron 5 of 12) intron (NM_033481, intron 5 of 12) 9813 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 98.5001 chr1 49811826 49812166 + 0.5 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 211958 NM_001323573 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 140.428-2 chr3 4677330 4677822 + 0.5 NA intron (NM_001168272, intron 23 of 60) L2a|LINE|L2 74014 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 135.929-5 chr8 120539805 120540099 + 0.5 NA intron (NM_021021, intron 6 of 6) MIRb|SINE|MIR 94533 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 126.786 chr14 62598524 62598894 + 0.5 NA Intergenic L1MA8|LINE|L1 446749 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 96.7857-11 chrX 18984832 18985143 + 0.5 NA promoter-TSS (NM_000292) promoter-TSS (NM_000292) -873 NM_000292 5256 Hs.54941 NM_000292 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase regulatory subunit alpha 2 protein-coding 125.143-11 chr7 111056707 111057018 + 0.5 NA intron (NM_032549, intron 3 of 5) Tigger2a|DNA|TcMar-Tigger -34144 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 108.286-8 chr11 130383786 130384117 + 0.5 NA intron (NR_148980, intron 2 of 6) intron (NR_148980, intron 2 of 6) 44658 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 119.857-4 chr4 58486303 58486594 + 0.5 NA Intergenic L1MC1|LINE|L1 49880 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 116.357-2 chr3 146704624 146704882 + 0.5 NA Intergenic Intergenic -98537 NM_001321245 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 115.286-3 chr15 47246871 47247410 + 0.5 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 63051 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 115.643-4 chr7 22611962 22612193 + 0.5 NA Intergenic L2b|LINE|L2 48740 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 125.786-3 chr2 161723527 161723864 + 0.5 NA intron (NM_001354443, intron 2 of 25) MER5B|DNA|hAT-Charlie 99279 NM_001354455 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 130.786 chr4 15291109 15291419 + 0.5 NA intron (NR_125911, intron 1 of 5) L2b|LINE|L2 -48724 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 114.214-3 chr2 39376350 39376842 + 0.5 NA intron (NM_003618, intron 2 of 33) L2b|LINE|L2 60689 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 157.428 chr10 25893666 25894270 + 0.5 NA Intergenic MIRb|SINE|MIR 39742 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 110.5-5 chr2 18793118 18793681 + 0.5 NA Intergenic Intergenic -203819 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 103.429-13 chr9 93137087 93137293 + 0.5 NA Intergenic Intergenic -2939 NM_004148 4814 Hs.494457 NM_004148 ENSG00000131669 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 156.143-3 chr18 10158489 10158913 + 0.5 NA Intergenic Intergenic 244685 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 146.929 chr2 70282288 70282836 + 0.5 NA intron (NM_001317166, intron 3 of 3) intron (NM_001317166, intron 3 of 3) 10662 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 115.429-6 chr6 97776390 97776746 + 0.5 NA Intergenic Intergenic -247963 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 112.143-8 chr6 40702584 40703139 + 0.5 NA Intergenic Intergenic -115497 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 98.2857-6 chr8 139745702 139746079 + 0.5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -42767 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 121.786-5 chr5 8493760 8494201 + 0.5 NA Intergenic Intergenic 33055 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 109.071-4 chr7 103636324 103636620 + 0.5 NA intron (NM_005045, intron 17 of 64) intron (NM_005045, intron 17 of 64) -190265 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 130.429-4 chr12 58769634 58770001 + 0.5 NA intron (NR_120452, intron 1 of 7) L1PREC2|LINE|L1 11899 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 109-6 chr3 17007111 17007420 + 0.5 NA intron (NM_015184, intron 1 of 5) AluY|SINE|Alu 74069 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 119.286-9 chr6 8230744 8231191 + 0.5 NA Intergenic AluJr4|SINE|Alu -128372 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 207.429 chr6 144860965 144861607 + 0.5 NA Intergenic MER110-int|LTR|ERV1 455631 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 116.571-9 chr5 93560004 93560309 + 0.5 NA intron (NR_109819, intron 2 of 5) MIRb|SINE|MIR 11187 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 115.5-7 chr9 127700894 127701382 + 0.5 NA Intergenic MER49|LTR|ERV1 -5850 NM_001012502 286207 Hs.652519 NM_001012502 ENSG00000160401 CFAP157 C9orf117 cilia and flagella associated protein 157 protein-coding 117.071-2 chr13 63889218 63889699 + 0.5 NA Intergenic Intergenic -45333 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 138.429-4 chr3 69730321 69730821 + 0.5 NA Intergenic Intergenic -8893 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 136.714-2 chr1 189001879 189002264 + 0.5 NA Intergenic Intergenic 1473939 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 99.3571-2 chr2 42389175 42389585 + 0.5 NA Intergenic L1ME4a|LINE|L1 -20423 NM_001319036 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 164.571-4 chr2 24916827 24917456 + 0.5 NA intron (NM_001320613, intron 2 of 21) intron (NM_001320613, intron 2 of 21) 3096 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 103.571 chr1 106131187 106131483 + 0.5 NA Intergenic Intergenic -103082 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 130.143-3 chr15 67514815 67515391 + 0.5 NA non-coding (NR_040054, exon 3 of 3) non-coding (NR_040054, exon 3 of 3) 5870 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 98.3571-5 chr17 61558961 61559260 + 0.5 NA Intergenic Intergenic 32109 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 130.143 chr1 174807399 174807914 + 0.5 NA intron (NM_001366454, intron 1 of 8) intron (NM_001366454, intron 1 of 8) 7918 NM_001366454 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 131.643-3 chr19 47623152 47623556 + 0.5 NA intron (NM_015711, intron 1 of 14) L1ME5|LINE|L1 15158 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 159.071-2 chr4 75810232 75810617 + 0.5 NA intron (NM_003715, intron 21 of 23) intron (NM_003715, intron 21 of 23) 85902 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 115.5-6 chr7 54327113 54327440 + 0.5 NA Intergenic Intergenic -3421 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 145.143-5 chr8 64329534 64330127 + 0.5 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 38728 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 129.786-2 chr2 128234868 128235340 + 0.5 NA Intergenic L1ME4b|LINE|L1 83764 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 133.214-5 chr7 105659521 105659915 + 0.5 NA intron (NM_001318229, intron 3 of 9) L2b|LINE|L2 19437 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 98.5-2 chr6 112480766 112480983 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 133544 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 124.357-6 chr4 67134836 67135334 + 0.5 NA Intergenic L1ME5|LINE|L1 286915 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 129.571-5 chr8 127534481 127534891 + 0.5 NA Intergenic Intergenic -52547 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 149.071-3 chr2 74961369 74961849 + 0.5 NA intron (NM_019896, intron 3 of 3) L2|LINE|L2 2966 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 116.571-6 chr2 109241236 109241716 + 0.5 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 72149 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 170.571-2 chr3 94809074 94809545 + 0.5 NA Intergenic L1MA6|LINE|L1 -128954 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 140.5-2 chr4 71788941 71789253 + 0.5 NA intron (NM_001204306, intron 1 of 13) intron (NM_001204306, intron 1 of 13) -5018 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 113.786-10 chr9 28023358 28023682 + 0.5 NA intron (NM_152570, intron 5 of 6) L1MCa|LINE|L1 -449654 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 100.643-2 chr19 18784808 18785211 + 0.5 NA exon (NM_000095, exon 16 of 19) exon (NM_000095, exon 16 of 19) 6296 NM_000095 1311 Hs.1584 NM_000095 ENSG00000105664 COMP EDM1|EPD1|MED|PSACH|THBS5|TSP5 cartilage oligomeric matrix protein protein-coding 102.357 chr13 63233019 63233515 + 0.5 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 94827 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 104.357-8 chr3 183143596 183143874 + 0.5 NA intron (NM_014398, intron 3 of 5) intron (NM_014398, intron 3 of 5) 18999 NM_014398 27074 Hs.518448 NM_014398 ENSG00000078081 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal associated membrane protein 3 protein-coding 154.571-4 chr6 45791907 45792487 + 0.5 NA Intergenic L1MD|LINE|L1 145400 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 112.143-3 chr10 32197430 32197661 + 0.5 NA Intergenic LTR19A|LTR|ERV1 -141120 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 105.714-12 chr9 28552411 28552717 + 0.5 NA intron (NM_152570, intron 2 of 6) HAL1|LINE|L1 166741 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 107.571 chr1 111246143 111246615 + 0.5 NA Intergenic Intergenic 16643 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 106.214-3 chr3 128084375 128084605 + 0.5 NA intron (NM_003707, intron 9 of 10) intron (NM_003707, intron 9 of 10) 8680 NR_046645 100874089 Hs.581603 NR_046645 ENSG00000239608 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 117.571-2 chr1 202801664 202802047 + 0.5 NA intron (NM_001314042, intron 1 of 27) intron (NM_001314042, intron 1 of 27) 7615 NM_001314042 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 115.571-4 chr8 75052650 75053038 + 0.5 NA Intergenic LTR78|LTR|ERV1 52689 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 175.286-4 chr6 94303278 94303842 + 0.5 NA Intergenic L1ME1|LINE|L1 585257 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 128.214-9 chr7 99288642 99288946 + 0.5 NA intron (NR_002147, intron 9 of 15) MIR|SINE|MIR 15493 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 159.214-2 chr15 57842849 57843253 + 0.5 NA Intergenic Charlie4a|DNA|hAT-Charlie 136337 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 109.929-7 chr8 129146498 129146863 + 0.5 NA Intergenic Intergenic 94560 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 154.714-5 chr5 142684403 142684849 + 0.5 NA intron (NM_001354956, intron 1 of 4) intron (NM_001354956, intron 1 of 4) 1054 NM_001257211 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 102.857-10 chrX 93385199 93385630 + 0.5 NA Intergenic Intergenic 288164 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 126.571-2 chr6 47753636 47754042 + 0.5 NA Intergenic L1MEg|LINE|L1 -28200 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 108.286-4 chr1 229817569 229818008 + 0.5 NA Intergenic LTR48|LTR|ERV1 68030 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 139.786-3 chr4 62542507 62542838 + 0.5 NA Intergenic L1MC1|LINE|L1 -380907 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 103-6 chr2 53372750 53372975 + 0.5 NA Intergenic Intergenic -394921 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 123.786-3 chr5 150710865 150711145 + 0.5 NA 3' UTR (NM_016221, exon 13 of 13) 3' UTR (NM_016221, exon 13 of 13) -9943 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 133.286-5 chr15 62722904 62723255 + 0.5 NA intron (NM_015059, intron 23 of 55) intron (NM_015059, intron 23 of 55) 75768 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 136.286-9 chr6 56600040 56600527 + 0.5 NA intron (NM_001144770, intron 36 of 94) intron (NM_001144770, intron 36 of 94) 42606 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 132.571-4 chr17 74269199 74269655 + 0.5 NA Intergenic AluSx1|SINE|Alu -4807 NR_148379 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 165.571-2 chr8 84608688 84609449 + 0.5 NA intron (NM_001354308, intron 3 of 9) MIRc|SINE|MIR -96859 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 105-9 chr14 52127811 52128116 + 0.5 NA Intergenic MER57A1|LTR|ERV1 -58904 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 100.429 chr10 93086628 93086888 + 0.5 NA Intergenic MIR|SINE|MIR 12865 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 143.071-2 chr8 136577351 136577961 + 0.5 NA intron (NR_147196, intron 2 of 5) MIR|SINE|MIR 46858 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 134.571-6 chr16 80100735 80101077 + 0.5 NA Intergenic Intergenic 305657 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 149.286 chr10 61522700 61523061 + 0.5 NA Intergenic L1M5|LINE|L1 42839 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 136.571-4 chr6 54809248 54809706 + 0.5 NA Intergenic Intergenic -37294 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 172.714-2 chr17 72250683 72251198 + 0.5 NA Intergenic Intergenic -91871 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 97.5-6 chr5 62173138 62173734 + 0.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -132726 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 125.286-4 chr5 138916726 138917441 + 0.5 NA intron (NM_001324009, intron 5 of 12) intron (NM_001324009, intron 5 of 12) 41683 NM_001323994 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 120.143-3 chr10 15309660 15309995 + 0.5 NA intron (NM_001010924, intron 1 of 7) intron (NM_001010924, intron 1 of 7) 61462 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 134.786-3 chr15 63267533 63267925 + 0.5 NA TTS (NM_016530) TTS (NM_016530) -9821 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 173.428 chr13 25980574 25981132 + 0.5 NA intron (NM_016529, intron 35 of 36) FAM|SINE|Alu 70207 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 97.5714-3 chr6 128712482 128712703 + 0.5 NA Intergenic Intergenic -170546 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 154.286-4 chrX 56100827 56101252 + 0.5 NA intron (NM_001324104, intron 2 of 6) L1PA16|LINE|L1 -131317 NR_136705 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 194.429 chr4 56841129 56841887 + 0.5 NA Intergenic MER57C2|LTR|ERV1 -19639 NR_073418 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 145.929-2 chr4 31932251 31932694 + 0.5 NA Intergenic MER58B|DNA|hAT-Charlie -64907 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 144.429 chr12 1771480 1772068 + 0.5 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -48493 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 146.786-4 chr2 122261883 122262370 + 0.5 NA Intergenic Intergenic 506475 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 114.428-2 chr18 53930223 53930582 + 0.5 NA Intergenic Intergenic 292010 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 127.286 chr10 22625817 22626317 + 0.5 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 88041 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 123.786 chr10 29428933 29429213 + 0.5 NA intron (NR_110927, intron 2 of 2) intron (NR_110927, intron 2 of 2) 18830 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 129.143-3 chr2 115870880 115871313 + 0.5 NA Intergenic Intergenic 527281 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 141.5 chr10 17588094 17588402 + 0.5 NA TTS (NM_014241) TTS (NM_014241) 29126 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 152.429 chr8 137942056 137942583 + 0.5 NA intron (NR_161374, intron 2 of 7) OldhAT1|DNA|hAT-Ac 141226 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 198.857 chr7 108551048 108551830 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 18014 NM_001287598 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 106-10 chr6 98961078 98961315 + 0.5 NA Intergenic Intergenic -13190 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 124.857-3 chr22 46528165 46528717 + 0.5 NA intron (NM_014246, intron 1 of 34) intron (NM_014246, intron 1 of 34) 9179 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 123.286 chr1 9769437 9769882 + 0.5 NA intron (NM_001009566, intron 2 of 18) L1MB7|LINE|L1 54867 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 104.5-2 chr10 67199966 67200333 + 0.5 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 187883 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 160.643-3 chr3 5048153 5048828 + 0.5 NA Intergenic MER50|LTR|ERV1 -68529 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 119.214 chr1 114954578 114955028 + 0.5 NA intron (NM_001282541, intron 27 of 31) AluSc|SINE|Alu -75021 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 112.143-5 chr14 60263917 60264172 + 0.5 NA intron (NM_177951, intron 2 of 3) L1MEi|LINE|L1 14823 NM_177951 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 96.7857-8 chr7 76385257 76385576 + 0.5 NA Intergenic Intergenic -12106 NM_007155 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 OOMD3|ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 127.071-2 chr2 241286079 241286474 + 0.5 NA intron (NM_005336, intron 1 of 27) MER4A1|LTR|ERV1 -13390 NM_001243900 3069 Hs.471851 NM_005336 ENSG00000115677 HDLBP HBP|PRO2900|VGL high density lipoprotein binding protein protein-coding 98.7143-4 chr3 193574224 193574564 + 0.5 NA Intergenic L2c|LINE|L2 -18750 NM_015560 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1 mitochondrial dynamin like GTPase protein-coding 150.214-3 chr2 31435691 31436240 + 0.5 NA Intergenic L1ME2|LINE|L1 -21223 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 102.429-3 chr20 37779044 37779469 + 0.5 NA exon (NM_030877, exon 10 of 16) exon (NM_030877, exon 10 of 16) 85226 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 134.714-2 chr6 39435610 39435986 + 0.5 NA intron (NM_001289021, intron 12 of 21) L1PB3|LINE|L1 -4408 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 151.143-3 chr5 107053999 107054524 + 0.5 NA Intergenic L1ME2|LINE|L1 -43247 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 135.786-5 chr8 52729416 52729853 + 0.5 NA Intergenic Charlie30a|DNA|hAT-Charlie -15168 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 98-3 chr18 67678614 67678810 + 0.5 NA intron (NR_033921, intron 1 of 4) L1PA15-16|LINE|L1 136110 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 123.857-6 chr7 86828525 86829045 + 0.5 NA intron (NM_001363522, intron 3 of 4) Tigger1|DNA|TcMar-Tigger 137114 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 112.929-8 chr5 39192349 39192605 + 0.5 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 27086 NM_199335 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 105.714 chr1 104603953 104604235 + 0.5 NA Intergenic L1MA9|LINE|L1 531071 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 144.857-2 chr2 46618919 46619300 + 0.5 NA intron (NM_014171, intron 2 of 4) intron (NM_014171, intron 2 of 4) 1894 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 127.714-4 chr14 56436435 56436909 + 0.5 NA Intergenic MER4-int|LTR|ERV1 -77659 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 149-2 chr5 5816391 5816862 + 0.5 NA Intergenic Intergenic 393949 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 148.071 chr10 37888332 37888796 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -30461 NR_147992 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 160.286-6 chr6 162567002 162567579 + 0.5 NA intron (NM_004562, intron 1 of 11) L1MA1|LINE|L1 -159842 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 112.857-2 chr15 33803084 33803381 + 0.5 NA intron (NM_001243996, intron 69 of 102) intron (NM_001243996, intron 69 of 102) -165265 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 126.929-4 chr2 73586878 73587312 + 0.5 NA intron (NM_015120, intron 16 of 22) L1PB2|LINE|L1 55327 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 117.571-7 chr20 18615619 18616064 + 0.5 NA intron (NM_080820, intron 3 of 5) intron (NM_080820, intron 3 of 5) 27787 NM_001318043 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 143.786-5 chr6 53117476 53117910 + 0.5 NA Intergenic AluSz|SINE|Alu 31148 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 118.5-6 chr5 13176311 13176581 + 0.5 NA Intergenic Intergenic -143560 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 199.357 chr1 247320452 247320854 + 0.5 NA intron (NM_001329733, intron 6 of 9) L1MD1|LINE|L1 11214 NM_001329733 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 159.643-5 chr8 127462595 127463071 + 0.5 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 19306 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 164.214-3 chr4 63105039 63105573 + 0.5 NA Intergenic Intergenic -943541 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 105.357 chr1 198030620 198030992 + 0.5 NA Intergenic Intergenic 113434 NM_001370213 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 144.571-2 chr16 19638934 19639353 + 0.5 NA intron (NM_001300743, intron 18 of 27) MER44B|DNA|TcMar-Tigger -77313 NM_001305122 124152 Hs.460217 NM_153208 ENSG00000174628 IQCK - IQ motif containing K protein-coding 206.357 chr7 8667493 8667953 + 0.5 NA intron (NM_152745, intron 2 of 2) L1M3e|LINE|L1 234114 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 111.571 chr12 103184426 103184671 + 0.5 NA Intergenic Intergenic 32706 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 114.5-2 chr16 26223380 26223720 + 0.5 NA Intergenic Intergenic 198313 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 113.357-3 chr2 210966507 210966939 + 0.5 NA Intergenic Intergenic 349152 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 100.143-8 chr2 240517851 240518216 + 0.5 NA intron (NM_017844, intron 7 of 13) LOR1-int|LTR|ERV1 39955 NM_001282781 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 135.643-3 chr9 12565487 12565795 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -127744 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 134.286 chr1 212187450 212187903 + 0.5 NA Intergenic AluYg6|SINE|Alu 47060 NR_125982 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 113.071-4 chr20 3713577 3713878 + 0.5 NA Intergenic AluJo|SINE|Alu -1127 NM_023068 6614 Hs.31869 NM_023068 ENSG00000088827 SIGLEC1 CD169|SIGLEC-1|SN sialic acid binding Ig like lectin 1 protein-coding 104.571-6 chr14 50275595 50275941 + 0.5 NA intron (NM_024884, intron 6 of 9) ERVL-E-int|LTR|ERVL 24178 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 96.5-2 chr2 106860127 106860374 + 0.5 NA intron (NM_032528, intron 1 of 5) L2a|LINE|L2 25778 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 135.714-5 chr3 88272072 88272556 + 0.5 NA Intergenic L1ME3A|LINE|L1 -66142 NM_001368168 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 96.5714-3 chr1 167893786 167894179 + 0.5 NA intron (NM_018417, intron 7 of 32) intron (NM_018417, intron 7 of 32) 20152 NM_001297772 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 112.286-2 chr1 109347398 109347671 + 0.5 NA intron (NM_001205228, intron 6 of 19) intron (NM_001205228, intron 6 of 19) -40523 NM_001010985 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 101.643-9 chr6 10513372 10513630 + 0.5 NA Intergenic Intergenic -7834 NM_145649 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 133.928 chr6 37170964 37171271 + 0.5 NA intron (NM_001243186, intron 3 of 5) CpG-23566 965 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 115.786-3 chr4 30662896 30663262 + 0.5 NA Intergenic LTR2|LTR|ERV1 -57290 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 182.5 chr16 55104678 55105245 + 0.5 NA Intergenic MIR3|SINE|MIR 173762 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 105-4 chr10 82561965 82562429 + 0.5 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -329277 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 136.714-7 chr2 33458105 33458569 + 0.5 NA intron (NM_001349979, intron 1 of 17) intron (NM_001349979, intron 1 of 17) 282 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 130.429-3 chr10 95296484 95296800 + 0.5 NA Intergenic LTR16A|LTR|ERVL -5639 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 97.7143-5 chr14 92694071 92694270 + 0.5 NA Intergenic LTR40a|LTR|ERVL 54457 NM_001363696 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 123.857-3 chr2 10321457 10321842 + 0.5 NA intron (NM_134421, intron 1 of 5) L1MB7|LINE|L1 -8514 NM_001258357 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 130.714-3 chr17 20148139 20148471 + 0.5 NA intron (NM_001033553, intron 3 of 14) AluJr|SINE|Alu -7767 NM_001033554 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 157.429-2 chr5 74206457 74207094 + 0.5 NA Intergenic Intergenic 101550 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 135.5-3 chr14 58213166 58213559 + 0.5 NA intron (NM_018477, intron 5 of 12) MER33|DNA|hAT-Charlie 13213 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 145-3 chr8 16720863 16721506 + 0.5 NA Intergenic Intergenic 281161 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 113.286-9 chr3 36217188 36217496 + 0.5 NA Intergenic L1ME3A|LINE|L1 -163145 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 107.286-8 chrX 50073187 50073532 + 0.5 NA intron (NM_001282163, intron 3 of 11) MIR|SINE|MIR 3858 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 133.286-4 chr14 72897402 72897712 + 0.5 NA Intergenic Intergenic -3441 NM_001280543 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 117.428-3 chr12 72724177 72724567 + 0.5 NA Intergenic LTR49-int|LTR|ERV1 -434818 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 102-4 chr22 36019300 36019571 + 0.5 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 9102 NM_001349999 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 148.929-3 chr22 32050866 32051182 + 0.5 NA intron (NM_000343, intron 2 of 14) intron (NM_000343, intron 2 of 14) 7763 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 168.857-4 chr2 16116371 16116892 + 0.5 NA Intergenic Intergenic 66204 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 133.857-4 chr2 178481036 178481327 + 0.5 NA intron (NM_019091, intron 1 of 7) intron (NM_019091, intron 1 of 7) 724 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 118.143-2 chr10 15444997 15445384 + 0.5 NA Intergenic Intergenic -73901 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 144 chr10 8955945 8956427 + 0.5 NA Intergenic Intergenic 58197 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 175.071 chr14 62273340 62273908 + 0.5 NA Intergenic L1M5|LINE|L1 -133651 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 132.143-9 chr8 130994745 130995191 + 0.5 NA intron (NM_001115, intron 1 of 17) L1M5|LINE|L1 45941 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 165.143-2 chr22 43994407 43994966 + 0.5 NA intron (NM_015380, intron 14 of 14) intron (NM_015380, intron 14 of 14) -4525 NM_001003828 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 110.571-6 chr2 211156580 211156923 + 0.5 NA Intergenic Intergenic 539180 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 105.143-9 chr17 64295009 64295304 + 0.5 NA Intergenic Intergenic -31896 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 120.357 chr14 66077238 66077555 + 0.5 NA Intergenic L2c|LINE|L2 -408975 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 112.071-3 chr17 76309524 76309866 + 0.5 NA 3' UTR (NM_002766, exon 10 of 10) 3' UTR (NM_002766, exon 10 of 10) -2015 NR_130649 84074 Hs.252739 NM_032134 ENSG00000129646 QRICH2 SPGF35 glutamine rich 2 protein-coding 111.429-9 chr5 146518945 146519329 + 0.5 NA Intergenic Intergenic -3024 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 98.7143-2 chr20 12772631 12772935 + 0.5 NA Intergenic L1PB1|LINE|L1 164180 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 117.857 chr1 59862713 59863002 + 0.5 NA exon (NM_015888, exon 16 of 22) exon (NM_015888, exon 16 of 22) 47908 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 103-2 chr12 10009211 10009597 + 0.5 NA Intergenic Intergenic -1223 NR_135049 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 100.357-5 chr6 50309569 50309842 + 0.5 NA Intergenic L3|LINE|CR1 -259776 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 136.143-5 chr4 65855424 65855951 + 0.5 NA Intergenic Intergenic -185192 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 123 chr1 188392630 188393027 + 0.5 NA Intergenic AluY|SINE|Alu 949200 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 161.786-3 chr20 47080475 47081229 + 0.5 NA intron (NM_172110, intron 7 of 13) THE1B|LTR|ERVL-MaLR -86115 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 131.571-3 chr4 39126822 39127104 + 0.5 NA TTS (NM_015990) TTS (NM_015990) -55566 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 110.5-4 chr18 7679526 7679762 + 0.5 NA intron (NM_002845, intron 1 of 30) AluSz6|SINE|Alu 112328 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 96.5714 chr1 27767758 27768013 + 0.5 NA Intergenic L1ME1|LINE|L1 -5334 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 123.571 chr18 57233729 57234070 + 0.5 NA Intergenic Intergenic -62705 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 132.214 chr1 113861758 113862113 + 0.5 NA intron (NM_012411, intron 1 of 18) intron (NM_012411, intron 1 of 18) 5300 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 196.857 chr1 70282587 70283266 + 0.5 NA intron (NM_030816, intron 9 of 12) intron (NM_030816, intron 9 of 12) 61546 NM_001350611 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 106.714-9 chr17 58431437 58431789 + 0.5 NA intron (NM_001080439, intron 5 of 5) intron (NM_001080439, intron 5 of 5) -14031 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 100.571 chr10 29044972 29045295 + 0.5 NA Intergenic Intergenic 198725 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 99.1429-3 chr6 86908315 86908662 + 0.5 NA Intergenic HAL1|LINE|L1 -29040 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 127.786-2 chr22 38445406 38445936 + 0.5 NA intron (NM_152868, intron 1 of 1) intron (NM_152868, intron 1 of 1) -1643 NM_004981 3761 Hs.32505 NM_004981 ENSG00000168135 KCNJ4 HIR|HIRK2|HRK1|IRK-3|IRK3|Kir2.3 potassium voltage-gated channel subfamily J member 4 protein-coding 108.143-8 chr3 9209314 9209636 + 0.5 NA intron (NM_014850, intron 1 of 21) L1MB7|LINE|L1 -7420 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 131.714 chr22 23558810 23559330 + 0.5 NA Intergenic L1MD|LINE|L1 20968 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 138.714-4 chr5 166505430 166505794 + 0.5 NA Intergenic Intergenic 420758 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 164.143 chr13 33833328 33834084 + 0.5 NA intron (NM_002915, intron 7 of 8) intron (NM_002915, intron 7 of 8) 15557 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 140.857-4 chr8 129823683 129824189 + 0.5 NA Intergenic MST-int|LTR|ERVL-MaLR -37312 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 110.857-8 chr2 167510238 167510498 + 0.5 NA Intergenic LTR80B|LTR|ERVL -308304 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 184.214 chr14 43993475 43993929 + 0.5 NA Intergenic L1M5|LINE|L1 513581 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 112.643 chr1 215095186 215095496 + 0.5 NA intron (NM_001017424, intron 2 of 6) intron (NM_001017424, intron 2 of 6) 12604 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 138.714-2 chr17 63111194 63111695 + 0.5 NA intron (NM_025185, intron 4 of 25) L3|LINE|CR1 145209 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 127.5-3 chr12 30582171 30582477 + 0.5 NA Intergenic L2c|LINE|L2 94920 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 160.429-4 chr5 160810612 160811199 + 0.5 NA intron (NM_001366652, intron 1 of 24) L1MEf|LINE|L1 41306 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 132.214-4 chr5 105924702 105925069 + 0.5 NA Intergenic Intergenic 825411 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 169.857-3 chr7 104762274 104762808 + 0.5 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 41551 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 115.857-4 chr2 15404872 15405362 + 0.5 NA intron (NR_052013, intron 25 of 50) intron (NR_052013, intron 25 of 50) 156217 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 102.929-7 chr4 44165632 44166074 + 0.5 NA Intergenic Intergenic 148791 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 100.786-6 chr22 40110195 40110537 + 0.5 NA intron (NM_001024843, intron 1 of 23) MIR|SINE|MIR 65549 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 102.928 chr3 102551351 102551785 + 0.5 NA Intergenic Intergenic 116553 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 98.7143-3 chr3 154482304 154482617 + 0.5 NA Intergenic L1MC5|LINE|L1 -52270 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 104.5-5 chrUn_KI270411v1 1206 1781 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 124.5-3 chr3 188313986 188314304 + 0.428571 NA intron (NM_005578, intron 2 of 10) L1M5|LINE|L1 88740 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 106.143-13 chr8 108752022 108752402 + 0.428571 NA intron (NR_136411, intron 1 of 3) MIR|SINE|MIR 35382 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 98.7142-5 chrX 72027492 72027828 + 0.428571 NA intron (NM_001013627, intron 1 of 7) intron (NM_001013627, intron 1 of 7) -16749 NR_002309 441502 Hs.449523 NR_002309 RPS26P11 RPS26L1|RPS26_22_1784|bA366E13.1 ribosomal protein S26 pseudogene 11 pseudo 102.571-4 chr2 137567614 137568089 + 0.428571 NA intron (NM_001316349, intron 16 of 27) L2a|LINE|L2 360081 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 122.929 chr15 61088928 61089698 + 0.428571 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 139989 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 104.571-14 chr5 14040884 14041315 + 0.428571 NA Intergenic Intergenic -96619 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 120.214-13 chr8 101303254 101303630 + 0.428571 NA Intergenic Intergenic -65451 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 122.357-3 chr17 62880860 62881410 + 0.428571 NA Intergenic MSTD|LTR|ERVL-MaLR -63080 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 202.643 chr6 47016507 47017332 + 0.428571 NA intron (NM_153840, intron 7 of 14) L2a|LINE|L2 25413 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 107.143-8 chr17 5019229 5019558 + 0.428571 NA non-coding (NR_120665, exon 2 of 2) non-coding (NR_120665, exon 2 of 2) 700 NR_120665 102724009 Hs.666487 NR_120665 ENSG00000227495 LOC102724009 - uncharacterized LOC102724009 ncRNA 116.571-10 chr6 16843214 16843677 + 0.428571 NA Intergenic Intergenic -81955 NM_001128164 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 125.214-2 chr15 67966470 67966856 + 0.428571 NA Intergenic L1MB5|LINE|L1 -87516 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 112.071-2 chr14 33798214 33798580 + 0.428571 NA intron (NM_001165893, intron 10 of 10) intron (NM_001165893, intron 10 of 10) 89460 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 124-9 chr4 58735878 58736345 + 0.428571 NA Intergenic LTR16C|LTR|ERVL -199783 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 106.571 chr1 159278211 159278626 + 0.428571 NA Intergenic Intergenic -11296 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 124.286-6 chr22 28854313 28854791 + 0.428571 NA Intergenic AluJo|SINE|Alu -29020 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 99.2856 chr1 219875976 219876263 + 0.428571 NA Intergenic Intergenic 52532 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 123.214-4 chr7 74186975 74187409 + 0.428571 NA intron (NM_031992, intron 1 of 5) AluSx|SINE|Alu -4006 NR_030321 693175 NR_030321 ENSG00000207741 MIR590 MIRN590|hsa-mir-590|mir-590 microRNA 590 ncRNA 100.714-3 chr12 89733863 89734110 + 0.428571 NA Intergenic MIR|SINE|MIR -24620 NM_001001323 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 124.714-4 chr3 164760768 164761312 + 0.428571 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 70440 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 109.5-3 chr15 59415414 59415838 + 0.428571 NA Intergenic MLT1D|LTR|ERVL-MaLR -22560 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 132-4 chr15 81937730 81938250 + 0.428571 NA Intergenic Intergenic 108028 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 102-9 chr7 54476419 54476731 + 0.428571 NA Intergenic Intergenic -65750 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 100.286-8 chr2 65248677 65249110 + 0.428571 NA intron (NM_001005386, intron 4 of 9) AluSz6|SINE|Alu 21198 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 117.857-10 chr5 35297813 35298121 + 0.428571 NA Intergenic LTR33A_|LTR|ERVL -67480 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 104.357-11 chr7 93394328 93394925 + 0.428571 NA Intergenic Intergenic 88229 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 104.143-12 chr5 136201063 136201378 + 0.428571 NA Intergenic MER5A|DNA|hAT-Charlie -8058 NM_001350994 389332 Hs.127680 NM_001350994 ENSG00000271824 SMIM32 - small integral membrane protein 32 protein-coding 112.714-9 chr4 47702571 47702959 + 0.428571 NA intron (NM_006587, intron 5 of 21) intron (NM_006587, intron 5 of 21) 50096 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 116.571 chr1 179919560 179919844 + 0.428571 NA 3' UTR (NM_015602, exon 10 of 10) 3' UTR (NM_015602, exon 10 of 10) -35108 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 97.2856-2 chrX 17063774 17064072 + 0.428571 NA intron (NM_001080975, intron 9 of 17) intron (NM_001080975, intron 9 of 17) 117265 NM_001080975 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 97.2142-2 chr3 97951729 97952134 + 0.428571 NA intron (NM_001042533, intron 5 of 9) intron (NM_001042533, intron 5 of 9) 20500 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 105-8 chr13 111933469 111933875 + 0.428571 NA Intergenic L1PB1|LINE|L1 -38638 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 124.071-2 chr6 148084294 148084770 + 0.428571 NA Intergenic Intergenic -187796 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 106.071-5 chr11 130636897 130637251 + 0.428571 NA Intergenic Intergenic -29661 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 125.929 chr1 185401991 185402635 + 0.428571 NA Intergenic L1M5|LINE|L1 -67274 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 156.143-5 chr3 69049411 69049776 + 0.428571 NA promoter-TSS (NR_036087) promoter-TSS (NR_036087) -558 NR_036087 100422859 NR_036087 ENSG00000265355 MIR3136 mir-3136 microRNA 3136 ncRNA 129.214-2 chr14 35159138 35159619 + 0.428571 NA intron (NM_014672, intron 4 of 7) intron (NM_014672, intron 4 of 7) 36826 NM_001256680 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 119.143-5 chr14 60136478 60136986 + 0.428571 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 28666 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 108.857-3 chr12 97383177 97383550 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger -79413 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 144.929-2 chr2 20834943 20835777 + 0.428571 NA Intergenic Intergenic -12230 NR_104233 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 151-2 chr8 136740846 136741316 + 0.428571 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 210283 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 97.6428 chr5 28797000 28797612 + 0.428571 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat -129564 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 113.286-7 chr2 26807367 26807651 + 0.428571 NA Intergenic AluJb|SINE|Alu 21453 NM_001809 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 147 chr1 209517668 209518247 + 0.428571 NA Intergenic Intergenic -65757 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 103.571-8 chr20 3218229 3218558 + 0.428571 NA intron (NM_001324236, intron 4 of 6) intron (NM_001324236, intron 4 of 6) 8895 NR_052002 3704 Hs.415299 NM_033453 ENSG00000125877 ITPA C20orf37|HLC14-06-P|ITPase|My049|NTPase|dJ794I6.3 inosine triphosphatase protein-coding 126.214-3 chr14 66480921 66481308 + 0.428571 NA Intergenic MER5B|DNA|hAT-Charlie -5257 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 124.357-5 chr3 58695716 58696524 + 0.428571 NA Intergenic Intergenic -29346 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 112-2 chr11 11718578 11719050 + 0.428571 NA Intergenic MER58A|DNA|hAT-Charlie -62092 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 97.857-4 chr20 62774993 62775390 + 0.428571 NA intron (NR_046224, intron 2 of 2) intron (NR_046224, intron 2 of 2) 1665 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 121.286-7 chr9 3563376 3563910 + 0.428571 NA Intergenic Tigger3b|DNA|TcMar-Tigger -37642 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 125.786-2 chr2 80185745 80186038 + 0.428571 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 118861 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 111.214-8 chr8 130199674 130200271 + 0.428571 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 96561 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 115.714 chr1 225022154 225022512 + 0.428571 NA intron (NM_001349911, intron 10 of 10) L1PA16|LINE|L1 92658 NM_001349912 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 106.072 chr2 41284707 41285174 + 0.428571 NA Intergenic L1MCc|LINE|L1 -592615 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 123.357-3 chr3 99010944 99011560 + 0.428571 NA Intergenic L1ME3G|LINE|L1 -109557 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 112.714-12 chr8 29052813 29053188 + 0.428571 NA non-coding (NR_136758, exon 11 of 11) non-coding (NR_136758, exon 11 of 11) 161686 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 174.714 chr16 79950520 79951044 + 0.428571 NA Intergenic Intergenic 155533 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 112.071 chr10 105290576 105290921 + 0.428571 NA Intergenic MLT1H1|LTR|ERVL-MaLR 529585 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 135.714-6 chr8 112750440 112750990 + 0.428571 NA intron (NM_001363185, intron 11 of 66) L2a|LINE|L2 107222 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 109.857-3 chr5 32437455 32437940 + 0.428571 NA intron (NM_016107, intron 2 of 19) intron (NM_016107, intron 2 of 19) 7043 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 139.286-3 chr17 21855370 21855835 + 0.428571 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 163079 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 125.143-2 chr11 55636047 55636486 + 0.428571 NA Intergenic Intergenic -2092 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 110.571-2 chr12 2989409 2989711 + 0.428571 NA intron (NM_201443, intron 1 of 10) AluSx1|SINE|Alu 29625 NM_201443 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 116.143-5 chr2 222899831 222900144 + 0.428571 NA intron (NM_203372, intron 2 of 15) MER41C|LTR|ERV1 38951 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 99.1428-7 chr6 47399247 47399718 + 0.428571 NA Intergenic Intergenic -78307 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 103.857-5 chr2 57372019 57372467 + 0.428571 NA Intergenic Intergenic -535408 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 103.714-5 chr11 29063795 29064247 + 0.428571 NA Intergenic Tigger3b|DNA|TcMar-Tigger -530392 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 107.143-17 chr6 84575327 84575655 + 0.428571 NA Intergenic ERVL-E-int|LTR|ERVL -100562 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 132.428-2 chr10 74381573 74381988 + 0.428571 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 147544 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 161.714-2 chr2 155317803 155318517 + 0.428571 NA Intergenic Intergenic 619465 NM_001260509 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 166.714-2 chr20 22538052 22538529 + 0.428571 NA Intergenic MIRb|SINE|MIR 40352 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 101.5-7 chr4 55131781 55132156 + 0.428571 NA Intergenic MIR|SINE|MIR -6373 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 108.428 chr1 200361680 200362132 + 0.428571 NA intron (NR_040064, intron 4 of 4) AluJr|SINE|Alu 11886 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 106.143-7 chr2 148795301 148795883 + 0.428571 NA Intergenic Intergenic -79635 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 123.286-5 chr17 73277958 73278455 + 0.428571 NA Intergenic AluSx1|SINE|Alu -16326 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 99.0001-2 chr2 223201149 223201544 + 0.428571 NA Intergenic Intergenic 149416 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 138.643-7 chr3 47493576 47494187 + 0.428571 NA Intergenic AluJr4|SINE|Alu -17940 NM_001320044 22937 Hs.531789 NM_012235 ENSG00000114650 SCAP - SREBF chaperone protein-coding 116.428 chr18 13013398 13013739 + 0.428571 NA intron (NM_032142, intron 5 of 44) intron (NM_032142, intron 5 of 44) 22206 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 178.286-6 chr8 65332589 65333131 + 0.428571 NA Intergenic Intergenic -152520 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 106.714-7 chr14 59159540 59159998 + 0.428571 NA Intergenic Intergenic -28898 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 101.5-11 chr9 33689965 33690569 + 0.428571 NA Intergenic Intergenic -12847 NR_023917 11191 Hs.493716 NR_023917 ENSG00000237984 PTENP1 PTEN-rs|PTEN2|PTENpg1|PTH2|psiPTEN phosphatase and tensin homolog pseudogene 1 pseudo 107.428 chr16 71470675 71470976 + 0.428571 NA Intergenic Intergenic -8578 NM_001304494 7571 Hs.656643 NM_145911 ENSG00000167377 ZNF23 KOX16|ZNF359|ZNF612|Zfp612 zinc finger protein 23 protein-coding 142.786-2 chr5 14558306 14558667 + 0.428571 NA Intergenic AluSz|SINE|Alu -23306 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 148.143-3 chr2 121659085 121659598 + 0.428571 NA intron (NR_037857, intron 2 of 3) AluSx|SINE|Alu 9352 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 183.143 chr1 168526620 168527331 + 0.428571 NA Intergenic L1MEd|LINE|L1 17022 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 156.143-6 chr4 47578535 47578951 + 0.428571 NA intron (NM_020453, intron 19 of 22) intron (NM_020453, intron 19 of 22) -73926 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 132-7 chr4 104519391 104519903 + 0.428571 NA intron (NR_125926, intron 1 of 9) L3|LINE|CR1 -24753 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 98.4999-2 chr19 56198749 56198978 + 0.428571 NA Intergenic Intergenic -5811 NM_001080456 342933 Hs.132130 NM_001080456 ENSG00000197213 ZSCAN5B ZNF371|ZNF495B zinc finger and SCAN domain containing 5B protein-coding 153-2 chr3 61034760 61035354 + 0.428571 NA intron (NR_148922, intron 3 of 3) L1MB5|LINE|L1 216395 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 133.571-6 chr5 99267863 99268278 + 0.428571 NA Intergenic L1M3|LINE|L1 -265920 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 130.714 chr1 53799890 53800311 + 0.428571 NA intron (NR_033142, intron 10 of 16) intron (NR_033142, intron 10 of 16) 38196 NM_001168551 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 108.357-4 chr12 104692461 104692775 + 0.428571 NA intron (NM_018413, intron 2 of 2) MER1B|DNA|hAT-Charlie 100985 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 116.286 chr17 43211132 43211653 + 0.428571 NA promoter-TSS (NM_001291587) promoter-TSS (NM_001291587) -483 NM_001291586 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 106.714-4 chr11 35632968 35633298 + 0.428571 NA Intergenic AluJb|SINE|Alu 14673 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 107.286 chr1 111557636 111558207 + 0.428571 NA intron (NM_001370216, intron 1 of 7) L1MEd|LINE|L1 6082 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 150.214 chr18 586383 587178 + 0.428571 NA Intergenic 7SK|RNA|RNA 6400 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 100.714-17 chr7 12130785 12131157 + 0.428571 NA Intergenic L2|LINE|L2 -80323 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 132.286-2 chr2 80205365 80205859 + 0.428571 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 99140 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 112.286-19 chr8 106236210 106236727 + 0.428571 NA Intergenic Intergenic -33710 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 110.143-6 chr15 26102649 26103071 + 0.428571 NA Intergenic L1M5|LINE|L1 -12953 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 102.214-12 chr8 115544955 115545272 + 0.428571 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 122900 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 153.643-3 chr15 100447038 100447407 + 0.428571 NA intron (NM_001290341, intron 13 of 13) MER4D1|LTR|ERV1 74283 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 150-2 chr11 60113406 60113991 + 0.428571 NA Intergenic MER4D1|LTR|ERV1 25034 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 149.143-2 chr12 128675765 128676520 + 0.428571 NA intron (NM_001136103, intron 5 of 8) L1MC4|LINE|L1 147816 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 103.857-9 chr4 73188281 73188643 + 0.428571 NA intron (NM_032217, intron 1 of 33) AluSx4|SINE|Alu 34595 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 114.786-3 chr14 79805943 79806444 + 0.428571 NA intron (NM_138970, intron 5 of 5) intron (NM_138970, intron 5 of 5) -405226 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 112.643-2 chr12 105762510 105762795 + 0.428571 NA Intergenic L1MB7|LINE|L1 55878 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 135.857-2 chr2 43487701 43488192 + 0.428571 NA intron (NM_001083953, intron 25 of 37) L1MC5a|LINE|L1 108028 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 132.714-2 chr12 122476146 122476471 + 0.428571 NA intron (NM_001350938, intron 10 of 10) intron (NM_001350938, intron 10 of 10) 24624 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 154.857 chr13 59625041 59625784 + 0.428571 NA Intergenic MLT1G1|LTR|ERVL-MaLR -387306 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 103.786-6 chr4 49096792 49097460 + 0.428571 NA Intergenic (CATTC)n|Satellite|Satellite 110484 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 98.7142-3 chr18 3944378 3944799 + 0.428571 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -17765 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 105.571-6 chr7 104032136 104032703 + 0.428571 NA Intergenic MER57A-int|LTR|ERV1 -42761 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 122.214-2 chr19 38983971 38984296 + 0.428571 NA Intergenic AluSc8|SINE|Alu -8391 NM_024907 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 147.428-2 chr20 8646459 8647075 + 0.428571 NA intron (NM_182734, intron 5 of 32) intron (NM_182734, intron 5 of 32) -184418 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 110.357-6 chr7 12653554 12653910 + 0.428571 NA TTS (NM_033128) TTS (NM_033128) -33095 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 105.143-3 chr11 28965350 28965653 + 0.428571 NA Intergenic Intergenic -487953 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 102.428-4 chr9 103114181 103114582 + 0.428571 NA Intergenic AluY|SINE|Alu 119048 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 182.429 chr8 125387600 125388071 + 0.428571 NA Intergenic AluSx|SINE|Alu -42523 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 125.571-3 chr10 51267804 51268152 + 0.428571 NA intron (NM_001098512, intron 2 of 17) MER11B|LTR|ERVK -31595 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 168.286 chr2 217394963 217395355 + 0.428571 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 112426 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 113.786-2 chr11 77585649 77586064 + 0.428571 NA Intergenic L1MC4|LINE|L1 -3779 NM_001363477 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 157.143-4 chr5 16884378 16885438 + 0.428571 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 51380 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 110.571-7 chr22 19941409 19941827 + 0.428571 NA promoter-TSS (NM_000754) promoter-TSS (NM_000754) -122 NM_000754 1312 Hs.370408 NM_000754 ENSG00000093010 COMT HEL-S-98n catechol-O-methyltransferase protein-coding 106.286-9 chr9 117631323 117631871 + 0.428571 NA Intergenic AluJr|SINE|Alu -17009 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 120.214-9 chr4 103911341 103911809 + 0.428571 NA Intergenic L1MEc|LINE|L1 -191590 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 103.714-17 chr4 157915420 157915724 + 0.428571 NA Intergenic Intergenic -255180 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 97.5713-3 chr5 30864063 30864324 + 0.428571 NA Intergenic L2c|LINE|L2 -329493 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 124.286-3 chr16 51884095 51884512 + 0.428571 NA Intergenic Intergenic 121784 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 134.428 chr11 98104437 98104869 + 0.428571 NA Intergenic L1ME4c|LINE|L1 -916296 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 114-2 chr11 12485919 12486475 + 0.428571 NA intron (NM_018222, intron 4 of 12) L1MC3|LINE|L1 108626 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 106.071-8 chr5 77121135 77121498 + 0.428571 NA intron (NR_024398, intron 3 of 3) MLT1F1|LTR|ERVL-MaLR -34031 NR_138050 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 111.357-3 chr13 108104878 108105153 + 0.428571 NA Intergenic Intergenic 109767 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 103.643-2 chr14 55485431 55485841 + 0.428571 NA Intergenic MER6A|DNA|TcMar-Tigger -45091 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 112.571-7 chr2 147328845 147329304 + 0.428571 NA Intergenic L1M5|LINE|L1 -515443 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 105.571-2 chr12 3550375 3550814 + 0.428571 NA intron (NM_019854, intron 3 of 9) MIR|SINE|MIR -57775 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 135.429-2 chr16 59008829 59009416 + 0.428571 NA Intergenic Intergenic -274806 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 114.643-3 chr2 104081447 104081904 + 0.428571 NA Intergenic L1MC1|LINE|L1 326657 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 116.5-3 chr8 121612913 121613306 + 0.428571 NA 3' UTR (NM_005328, exon 4 of 4) 3' UTR (NM_005328, exon 4 of 4) -26237 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 115.143-7 chr8 126251919 126252408 + 0.428571 NA Intergenic L1MA2|LINE|L1 -73332 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 148.928 chr15 59949674 59950243 + 0.428571 NA Intergenic Intergenic -54353 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 103.714-2 chr1 207801576 207801947 + 0.428571 NA TTS (NR_029832) TTS (NR_029832) 178 NR_029832 407026 NR_029832 ENSG00000284214 MIR29C MIRN29C|miRNA29C|mir-29c microRNA 29c ncRNA 97 chr11 110856239 110856739 + 0.428571 NA Intergenic MER103C|DNA|hAT-Charlie -143300 NM_001258418 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 102.571-8 chr5 57444316 57444748 + 0.428571 NA Intergenic Intergenic 38279 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 119.714-10 chr4 112331894 112332173 + 0.428571 NA intron (NM_001102406, intron 2 of 15) ERVL-E-int|LTR|ERVL 34664 NM_001102406 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 102.286-13 chr8 135734324 135734606 + 0.428571 NA Intergenic Intergenic 277009 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 105.857-9 chr2 149199979 149200319 + 0.428571 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 81975 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 115.571-3 chr17 13962452 13962721 + 0.428571 NA Intergenic Intergenic -61912 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 99.1428-3 chr2 137753781 137754154 + 0.428571 NA Intergenic HSMAR2|DNA|TcMar-Mariner 173965 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 139.714-3 chr15 101811481 101811936 + 0.428571 NA Intergenic L1PA13|LINE|L1 5988 NM_001005326 390648 Hs.553399 NM_001005326 ENSG00000184140 OR4F6 OR15-15|OR4F12 olfactory receptor family 4 subfamily F member 6 protein-coding 116.857 chr1 163216097 163216457 + 0.428571 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) -13361 NM_003617 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 145.286-10 chr8 133094359 133095110 + 0.428571 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) 7868 NM_001045557 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 102.571-3 chr19 18108036 18108403 + 0.428571 NA intron (NM_015016, intron 2 of 26) AluSz|SINE|Alu -9403 NM_001290024 3594 Hs.567294 NM_005535 ENSG00000096996 IL12RB1 CD212|IL-12R-BETA1|IL12RB|IMD30 interleukin 12 receptor subunit beta 1 protein-coding 125.428-2 chr14 63609731 63610214 + 0.428571 NA intron (NM_080666, intron 2 of 2) intron (NM_080666, intron 2 of 2) 31899 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 131.286 chr1 72009004 72009373 + 0.428571 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -172176 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 133.857 chr1 147566961 147567473 + 0.428571 NA intron (NM_004326, intron 1 of 9) intron (NM_004326, intron 1 of 9) 25716 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 122.143-4 chr20 17971253 17971711 + 0.428571 NA intron (NM_001310339, intron 2 of 2) intron (NM_001310339, intron 2 of 2) 2464 NM_001310339 92667 Hs.320823 NM_052865 ENSG00000125871 MGME1 C20orf72|DDK1|MTDPS11|bA504H3.4 mitochondrial genome maintenance exonuclease 1 protein-coding 97.7143 chr1 181210986 181211287 + 0.428571 NA Intergenic Intergenic -25252 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 151.929-3 chr18 14093493 14094005 + 0.428571 NA intron (NR_033354, intron 1 of 5) MER57B2|LTR|ERV1 38686 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 120.571-5 chr5 86668672 86669253 + 0.428571 NA Intergenic Tigger3a|DNA|TcMar-Tigger 48456 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 96.8572-4 chr15 62711298 62711679 + 0.428571 NA intron (NM_015059, intron 18 of 55) intron (NM_015059, intron 18 of 55) 64177 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 109.714-4 chr11 24951995 24952334 + 0.428571 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 455111 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 168.357-2 chr16 46394185 46394906 + 0.428571 NA Intergenic Intergenic 174552 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 106.072-4 chr4 88105948 88106376 + 0.428571 NA intron (NM_001257386, intron 10 of 15) AluJr|SINE|Alu 52477 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 107.286-5 chr3 82406261 82406665 + 0.428571 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 420321 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 159.714 chr1 213020884 213021372 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger -5253 NR_125333 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 128.571-3 chr10 71641824 71642125 + 0.428571 NA intron (NM_052836, intron 11 of 12) AluSz|SINE|Alu 77804 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 114.428-4 chr20 52298701 52298982 + 0.428571 NA Intergenic MLT1J|LTR|ERVL-MaLR -106856 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 161.571 chr18 38018687 38019131 + 0.428571 NA Intergenic AluSx|SINE|Alu 361774 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 138.643 chr1 14416988 14417594 + 0.428571 NA intron (NR_149058, intron 1 of 4) intron (NR_149058, intron 1 of 4) 2682 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 139.286-2 chr12 9166465 9167004 + 0.428571 NA intron (NM_002864, intron 17 of 35) intron (NM_002864, intron 17 of 35) 41661 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 103.5-6 chr13 109771712 109772235 + 0.428571 NA intron (NM_003749, intron 1 of 1) intron (NM_003749, intron 1 of 1) 14610 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 97.857-3 chr2 125493089 125493418 + 0.428571 NA Intergenic L1MA6|LINE|L1 624732 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 143.714-3 chr2 199707594 199708076 + 0.428571 NA Intergenic L1MEc|LINE|L1 99767 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 150.428 chr2 172163549 172163961 + 0.428571 NA Intergenic MER2|DNA|TcMar-Tigger 60749 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 123.429-4 chr4 62200461 62200857 + 0.428571 NA Intergenic Intergenic -38894 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 113.428-3 chr8 78337420 78337760 + 0.428571 NA Intergenic Intergenic -178750 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 131.5 chr11 123240245 123240575 + 0.428571 NA Intergenic Intergenic -45162 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 102.143-8 chr6 52331655 52331946 + 0.428571 NA Intergenic LTR67B|LTR|ERVL -30351 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 98.7858 chr1 190372307 190372678 + 0.428571 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 103518 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 112.428-2 chr20 13419527 13419910 + 0.428571 NA intron (NM_017714, intron 12 of 13) intron (NM_017714, intron 12 of 13) -180031 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 108.214-2 chr14 27288058 27288662 + 0.428571 NA Intergenic THE1B-int|LTR|ERVL-MaLR -324228 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 107.143 chr1 48736876 48737487 + 0.428571 NA intron (NR_146232, intron 3 of 4) AluSc8|SINE|Alu 39710 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 105-2 chr10 23101030 23101347 + 0.428571 NA intron (NM_012228, intron 1 of 4) L1PB1|LINE|L1 5609 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 105.643-16 chr8 100422913 100423299 + 0.428571 NA Intergenic Intergenic 40343 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 101-3 chr11 102317438 102317773 + 0.428571 NA intron (NM_182962, intron 1 of 9) CpG 121 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 112.714-10 chr5 43695785 43696058 + 0.428571 NA intron (NM_012343, intron 19 of 21) THE1B|LTR|ERVL-MaLR -92691 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 104.714-2 chr17 32408830 32409171 + 0.428571 NA Intergenic Intergenic -35510 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 171.5-2 chr18 65847323 65847884 + 0.428571 NA intron (NM_001362438, intron 7 of 11) intron (NM_001362438, intron 7 of 11) 96591 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 139.571-3 chr11 94056826 94057242 + 0.428571 NA intron (NM_001098672, intron 2 of 19) L1MA3|LINE|L1 35680 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 106.286-5 chr4 112888085 112888433 + 0.428571 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 27272 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 100.571-3 chr15 92024197 92024572 + 0.428571 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 170080 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 174.714-3 chr4 55410797 55411411 + 0.428571 NA intron (NR_073070, intron 2 of 6) AluSz|SINE|Alu 15147 NR_073070 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 118.643-4 chrX 81792046 81792322 + 0.428571 NA Intergenic L1PA4|LINE|L1 590082 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 107.571-3 chr17 58305611 58306020 + 0.428571 NA intron (NM_024418, intron 26 of 30) intron (NM_024418, intron 26 of 30) -19635 NR_038410 100506779 Hs.718477 NR_038410 ENSG00000265148 TSPOAP1-AS1 BZRAP1-AS1 TSPOAP1, SUPT4H1 and RNF43 antisense RNA 1 ncRNA 103.857-11 chr6 161362322 161362708 + 0.428571 NA intron (NM_004562, intron 10 of 11) L1MEd|LINE|L1 -88454 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 110.5-6 chr2 53509589 53509985 + 0.428571 NA Intergenic Intergenic -257996 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 127.571-4 chr2 188211928 188212367 + 0.428571 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 75544 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 164.857 chr11 74730487 74731143 + 0.428571 NA exon (NM_001278473, exon 1 of 11) exon (NM_001278473, exon 1 of 11) 611 NM_015424 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 121-10 chr7 13529699 13530136 + 0.428571 NA Intergenic Intergenic 456597 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 111.714-9 chr7 11739454 11739781 + 0.428571 NA intron (NM_015204, intron 1 of 26) FLAM_C|SINE|Alu 92581 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 109.857 chr11 47717352 47717917 + 0.428571 NA intron (NM_001318339, intron 16 of 16) intron (NM_001318339, intron 16 of 16) -2265 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 114.643-11 chr8 143875557 143876081 + 0.428571 NA intron (NM_031308, intron 1 of 1) ERV3-16A3_I-int|LTR|ERVL 2645 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 115.071-2 chr12 23396504 23396818 + 0.428571 NA Intergenic Intergenic 187925 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 98.5 chr5 45139431 45139923 + 0.428571 NA Intergenic MSTA-int|LTR|ERVL-MaLR 330730 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 110.571-3 chr14 66087835 66088212 + 0.428571 NA Intergenic Intergenic -398348 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 120.643-8 chr8 88397411 88397852 + 0.428571 NA Intergenic Intergenic -70148 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 177-2 chr9 105395086 105395635 + 0.428571 NA 3' UTR (NM_001286730, exon 16 of 16) 3' UTR (NM_001286730, exon 16 of 16) -52674 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 124.928-3 chr3 169985553 169985881 + 0.428571 NA intron (NM_003262, intron 5 of 7) intron (NM_003262, intron 5 of 7) 18910 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 108-17 chr9 95888668 95889022 + 0.428571 NA intron (NM_020207, intron 2 of 18) intron (NM_020207, intron 2 of 18) 12837 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 127.143-2 chr20 50880452 50881076 + 0.428571 NA Intergenic Intergenic 29027 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 144.214-5 chrX 56850284 56850847 + 0.428571 NA Intergenic L1PA8|LINE|L1 -112981 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 172.714 chr10 125162162 125162836 + 0.428571 NA Intergenic CpG-3487 -1469 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 136.286-10 chr6 144858092 144858550 + 0.428571 NA Intergenic MER110-int|LTR|ERV1 452666 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 135.857-4 chr7 55341145 55341644 + 0.428571 NA Intergenic AluSp|SINE|Alu -24054 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 127.571-6 chr5 152049008 152049541 + 0.428571 NA intron (NR_109876, intron 1 of 2) L1PB1|LINE|L1 90376 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 130.357 chr14 22725466 22725875 + 0.428571 NA Intergenic L1M5|LINE|L1 -41018 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 168.143-2 chr17 62620307 62620962 + 0.428571 NA Intergenic AluSx|SINE|Alu -7036 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 122.714-5 chr4 40331508 40332081 + 0.428571 NA Intergenic Charlie7|DNA|hAT-Charlie -3539 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 100.929-11 chr8 119207006 119207429 + 0.428571 NA Intergenic Intergenic -1146 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 105.429-7 chr2 134752536 134753043 + 0.428571 NA Intergenic L1MA4|LINE|L1 -33789 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 109.571-4 chr4 124542880 124543201 + 0.428571 NA intron (NR_110838, intron 3 of 8) L2|LINE|L2 15394 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 109.143-4 chr11 57958810 57959176 + 0.428571 NA Intergenic MSTC|LTR|ERVL-MaLR -64888 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 134 chr1 79895839 79896212 + 0.428571 NA Intergenic Intergenic -639730 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 133.428-2 chr16 69029434 69029997 + 0.428571 NA intron (NM_024562, intron 16 of 17) L2a|LINE|L2 -75938 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 104.357-12 chr9 27970869 27971285 + 0.428571 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -397211 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 97.4285-4 chr5 129851890 129852349 + 0.428571 NA Intergenic Intergenic -52346 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 115.5-5 chr7 8524711 8525076 + 0.428571 NA intron (NM_152745, intron 2 of 2) THE1A|LTR|ERVL-MaLR 91284 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 121.857-3 chr8 121028805 121029252 + 0.428571 NA Intergenic MIR|SINE|MIR -216982 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 97.4285-5 chr8 52337550 52338048 + 0.428571 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 71957 NM_001352883 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 123.214 chr2 119561559 119562076 + 0.428571 NA intron (NR_073132, intron 5 of 24) intron (NR_073132, intron 5 of 24) 17368 NR_073132 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 103.571-11 chrX 50617460 50617747 + 0.428571 NA intron (NR_027121, intron 5 of 9) intron (NR_027121, intron 5 of 9) -146778 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 124.714-6 chr5 118029675 118030053 + 0.428571 NA intron (NR_104997, intron 2 of 2) MLT1J1|LTR|ERVL-MaLR -252710 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 166.286-7 chr7 72297239 72297782 + 0.428571 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) 39881 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 124.357-4 chr2 53155080 53155584 + 0.428571 NA Intergenic L1MEi|LINE|L1 -452717 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 129.643-8 chr8 96113173 96113746 + 0.428571 NA Intergenic Intergenic 47347 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 157.071-2 chr2 51729267 51729687 + 0.428571 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -641171 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 115.714-6 chr14 73093034 73093476 + 0.428571 NA intron (NM_021239, intron 6 of 18) intron (NM_021239, intron 6 of 18) 34721 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 100.714-9 chr20 44581943 44582220 + 0.428571 NA promoter-TSS (NM_001281445) promoter-TSS (NM_001281445) -498 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 115.357-3 chr14 68147113 68147733 + 0.428571 NA intron (NM_133509, intron 7 of 10) L4_C_Mam|LINE|RTE-X 323831 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 118.214-2 chr2 28147439 28148033 + 0.428571 NA TTS (NR_120504) TTS (NR_120504) 59225 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 99.643 chr4 31211866 31212299 + 0.428571 NA TTS (NR_125935) TTS (NR_125935) 40938 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 109.929-2 chr12 74831427 74831896 + 0.428571 NA Intergenic L1PA14|LINE|L1 293826 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 97.5-3 chr18 76942054 76942371 + 0.428571 NA intron (NM_001306089, intron 26 of 30) intron (NM_001306089, intron 26 of 30) 74843 NM_001025092 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 153.286 chr2 31577800 31578363 + 0.428571 NA intron (NM_000348, intron 1 of 4) intron (NM_000348, intron 1 of 4) 2857 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 123.214-5 chr8 128280433 128280844 + 0.428571 NA Intergenic L1PB1|LINE|L1 130522 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 108.143-4 chr12 54019147 54019511 + 0.428571 NA intron (NM_014620, intron 1 of 3) CpG 2441 NM_014620 3221 Hs.549040 NM_014620 ENSG00000198353 HOXC4 HOX3|HOX3E|cp19 homeobox C4 protein-coding 105.428 chr10 44000162 44000627 + 0.428571 NA Intergenic Intergenic 87992 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 102.429-4 chr22 32880384 32880918 + 0.428571 NA intron (NM_003490, intron 4 of 13) LTR16A1|LTR|ERVL 79835 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 133.571-5 chr5 20295814 20296187 + 0.428571 NA intron (NM_001349556, intron 1 of 13) AluSx3|SINE|Alu -9551 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 110.857 chr1 39892255 39892774 + 0.428571 NA Intergenic MIR|SINE|MIR -9003 NR_132407 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 126.928 chr1 80801412 80801908 + 0.428571 NA Intergenic Intergenic 160373 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 100.857-13 chr4 127392481 127392828 + 0.428571 NA Intergenic Intergenic -240303 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 145.714 chr1 178914051 178914476 + 0.428571 NA intron (NM_152663, intron 19 of 19) L1PA16|LINE|L1 -43186 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 110.428 chr4 132019749 132020217 + 0.428571 NA Intergenic Intergenic 255145 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 127.286-2 chr11 2113279 2113696 + 0.428571 NA Intergenic AluJb|SINE|Alu 20722 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 115.428 chr3 54392877 54393166 + 0.428571 NA intron (NM_018398, intron 4 of 37) L1MA6|LINE|L1 246836 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 148.286-6 chr8 68303242 68303747 + 0.428571 NA TTS (NR_038877) TTS (NR_038877) -26879 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 101.714-9 chr7 92904741 92905188 + 0.428571 NA intron (NR_110087, intron 2 of 2) MLT1N2|LTR|ERVL-MaLR -68337 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 115-2 chr2 232455089 232455463 + 0.428571 NA promoter-TSS (NM_001631) promoter-TSS (NM_001631) -877 NM_001631 248 Hs.37009 NM_001631 ENSG00000163295 ALPI IAP alkaline phosphatase, intestinal protein-coding 158.428 chr2 198057939 198058577 + 0.428571 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 253665 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 111.643-3 chr17 49466212 49466569 + 0.428571 NA Intergenic Intergenic -4641 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 106.5 chr12 58193488 58193889 + 0.428571 NA Intergenic L1MA7|LINE|L1 105796 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 118.5-7 chr7 41159059 41159534 + 0.428571 NA Intergenic L1M4|LINE|L1 57692 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 148.857-4 chr14 58799462 58800084 + 0.428571 NA Intergenic AluSp|SINE|Alu -28515 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 101.143-10 chr3 40423022 40423653 + 0.428571 NA exon (NM_001291961, exon 9 of 11) exon (NM_001291961, exon 9 of 11) 29971 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 116.429-9 chr8 116004667 116005103 + 0.428571 NA intron (NR_046215, intron 7 of 13) L1MC1|LINE|L1 320174 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 107.714-12 chr3 125526116 125526641 + 0.428571 NA Intergenic Intergenic -6176 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 111.857-8 chr19 48305504 48306044 + 0.428571 NA intron (NM_144577, intron 6 of 13) intron (NM_144577, intron 6 of 13) 13725 NM_144577 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 104.571-16 chr7 27133132 27133486 + 0.428571 NA Intergenic Intergenic -2552 NM_002141 3201 Hs.533357 NM_002141 ENSG00000197576 HOXA4 HOX1|HOX1D homeobox A4 protein-coding 175.929 chr22 34205421 34205885 + 0.428571 NA Intergenic Intergenic -282765 NM_001362951 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 129.857-2 chr15 71063965 71064474 + 0.428571 NA Intergenic L1ME2|LINE|L1 -77230 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 143 chr16 87706480 87706863 + 0.428571 NA Intergenic Intergenic 59315 NM_001351937 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 100.071-9 chr7 24983241 24983715 + 0.428571 NA Intergenic MER117|DNA|hAT-Charlie -3300 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 116.571-2 chr13 24161334 24161773 + 0.428571 NA promoter-TSS (NR_031753) promoter-TSS (NR_031753) 833 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 108.286-7 chr11 36114473 36114858 + 0.428571 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -36764 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 127-2 chr7 29253448 29253827 + 0.428571 NA intron (NM_001293072, intron 1 of 12) L2c|LINE|L2 -44667 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 109.143-10 chr8 89839910 89840607 + 0.428571 NA Intergenic Intergenic -61610 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 132.143-6 chr3 59909359 59909739 + 0.428571 NA intron (NR_135491, intron 5 of 6) AluSz|SINE|Alu 171360 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 126 chr1 205347757 205348203 + 0.428571 NA intron (NM_001271863, intron 3 of 8) FLAM_C|SINE|Alu 8942 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 107.357-14 chr7 105755812 105756233 + 0.428571 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -76860 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 104.428 chr14 43251712 43252093 + 0.428571 NA Intergenic Intergenic 1255381 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 122.143-7 chr8 118923188 118923592 + 0.428571 NA TTS (NM_002546) TTS (NM_002546) 28495 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 127.286-6 chr5 27590434 27590864 + 0.428571 NA Intergenic L1PA16|LINE|L1 118357 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 126.143-4 chr4 12627321 12627937 + 0.428571 NA Intergenic L1PA16|LINE|L1 404178 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 157.357-2 chr6 57152741 57153229 + 0.428571 NA intron (NM_015555, intron 11 of 13) L1MEd|LINE|L1 19228 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 167.143-2 chr20 44508080 44508553 + 0.428571 NA intron (NM_006811, intron 5 of 9) AluJb|SINE|Alu 13754 NM_006811 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 137.143-7 chr4 59369923 59370268 + 0.428571 NA Intergenic Intergenic 356522 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 157.071-3 chr20 6083896 6084321 + 0.428571 NA exon (NM_017671, exon 13 of 15) exon (NM_017671, exon 13 of 15) -30048 NM_152611 164312 Hs.149133 NM_152611 ENSG00000125872 LRRN4 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 leucine rich repeat neuronal 4 protein-coding 106.786-3 chr2 35258742 35259108 + 0.428571 NA Intergenic L1PREC2|LINE|L1 -212480 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 132.643-2 chr19 46560175 46560777 + 0.428571 NA intron (NM_001370550, intron 1 of 2) (AAAT)n|Simple_repeat|Simple_repeat 40440 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 144.928-2 chr20 47473765 47474114 + 0.428571 NA Intergenic AluSg4|SINE|Alu -27948 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 136.857-6 chr7 53871049 53871556 + 0.428571 NA Intergenic L1PB2|LINE|L1 -59371 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 100.571-6 chr3 87988010 87988332 + 0.428571 NA intron (NM_000866, intron 1 of 1) MER5A|DNA|hAT-Charlie 5595 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 131.786 chr1 104056622 104057011 + 0.428571 NA Intergenic L1P3|LINE|L1 -16207 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 110.143-8 chr18 4312307 4312809 + 0.428571 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 47956 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 105.857 chr1 78947758 78948185 + 0.428571 NA intron (NM_022159, intron 2 of 14) MIR|SINE|MIR 58759 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 152.857-2 chr3 95816006 95816728 + 0.428571 NA Intergenic LTR8|LTR|ERV1 -133174 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 124.786-3 chr7 53464678 53465169 + 0.428571 NA Intergenic Intergenic 347008 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 121.428-3 chr4 142896711 142897233 + 0.428571 NA Intergenic L1PA15|LINE|L1 -50437 NM_003866 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 101.786 chr1 157624482 157625116 + 0.428571 NA Intergenic MIRb|SINE|MIR -26714 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 136.5-7 chr7 7178432 7179063 + 0.428571 NA Intergenic L2a|LINE|L2 -3868 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 99.2857-4 chr5 32407823 32408206 + 0.428571 NA intron (NM_016107, intron 5 of 19) intron (NM_016107, intron 5 of 19) -13539 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 212.643 chr5 65879788 65880320 + 0.428571 NA Intergenic AluSx1|SINE|Alu -46500 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 100.429-10 chr8 107663708 107663967 + 0.428571 NA Intergenic MER58C|DNA|hAT-Charlie -165919 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 111.857-5 chr15 25783201 25783540 + 0.428571 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 65455 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 122.143-5 chr4 58353496 58353886 + 0.428571 NA Intergenic Intergenic 182637 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 103.143-10 chr2 4985795 4986035 + 0.428571 NA Intergenic Intergenic -329693 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 140-7 chr7 7921757 7922251 + 0.428571 NA Intergenic Intergenic 46748 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 96.9999 chr2 18984915 18985245 + 0.428571 NA Intergenic L1MB2|LINE|L1 41891 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 170.357 chr2 17769569 17770384 + 0.428571 NA intron (NM_182625, intron 6 of 13) intron (NM_182625, intron 6 of 13) 15838 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 109.143-2 chr1 157140778 157141417 + 0.428571 NA Intergenic Intergenic -2506 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 154.5 chr1 9913282 9913668 + 0.428571 NA Intergenic AluSz|SINE|Alu -3206 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 97.2857-5 chr4 23553305 23553611 + 0.428571 NA Intergenic Intergenic 327834 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 139.428 chr1 111107617 111108110 + 0.428571 NA Intergenic L1MA4|LINE|L1 -31520 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 102.357-5 chr5 124319003 124319270 + 0.428571 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 119384 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 102.214-11 chr8 90832472 90833057 + 0.428571 NA intron (NM_022351, intron 3 of 12) MIRb|SINE|MIR 40989 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 139.428-2 chr8 73039013 73039572 + 0.428571 NA intron (NM_017489, intron 9 of 9) intron (NM_017489, intron 9 of 9) 30428 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 186.714-2 chr8 131990260 131990823 + 0.428571 NA intron (NM_001323558, intron 19 of 23) intron (NM_001323558, intron 19 of 23) 68841 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 101.714-12 chr9 30953129 30953540 + 0.428571 NA Intergenic Intergenic 428156 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 118.857-6 chr8 119150404 119150907 + 0.428571 NA Intergenic L2|LINE|L2 -57708 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 107.714-9 chr22 22802651 22802962 + 0.428571 NA Intergenic Intergenic -19970 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 105.143-8 chr15 54333109 54333538 + 0.428571 NA intron (NM_001329919, intron 14 of 31) intron (NM_001329919, intron 14 of 31) 320675 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 123.714 chr18 9959064 9959663 + 0.428571 NA 3' UTR (NM_003574, exon 7 of 7) 3' UTR (NM_003574, exon 7 of 7) 45347 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 100.571-2 chr14 50467141 50467522 + 0.428571 NA intron (NM_198794, intron 10 of 31) intron (NM_198794, intron 10 of 31) 65238 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 101-10 chrX 74113288 74113899 + 0.428571 NA intron (NR_028379, intron 5 of 6) L1MA10|LINE|L1 104868 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 101.714-4 chr2 17178738 17179388 + 0.428571 NA Intergenic Intergenic 339377 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 126.214-4 chr15 42951568 42951910 + 0.428571 NA intron (NM_174916, intron 45 of 46) AluJr|SINE|Alu -30961 NM_173500 146057 Hs.646511 NM_173500 ENSG00000128881 TTBK2 SCA11|TTBK tau tubulin kinase 2 protein-coding 99.5713 chr14 88714615 88714901 + 0.428571 NA intron (NM_183387, intron 9 of 42) (TTATA)n|Simple_repeat|Simple_repeat 78195 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 97.4285-2 chr16 24915442 24915918 + 0.428571 NA Intergenic Intergenic 69449 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 147.643 chr1 60721523 60722181 + 0.428571 NA intron (NR_110628, intron 4 of 5) MSTA-int|LTR|ERVL-MaLR -99167 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 188.571 chr16 35649389 35650104 + 0.428571 NA Intergenic ALR/Alpha|Satellite|centr -96806 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 109.857-6 chr7 53571445 53571715 + 0.428571 NA Intergenic Intergenic 240351 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 97.9999 chr15 101134912 101135528 + 0.428571 NA Intergenic AluSx|SINE|Alu 116828 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 141.357-2 chr15 77228234 77228599 + 0.428571 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) -3012 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 175.214-2 chr16 75973064 75973668 + 0.428571 NA Intergenic MamRep137|DNA|TcMar-Tigger -246876 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 97.9999-3 chr6 72793772 72794224 + 0.428571 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 163503 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 122.571-6 chr5 4559109 4559509 + 0.428571 NA Intergenic L2a|LINE|L2 -214172 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 105.143 chr10 57664162 57664575 + 0.428571 NA Intergenic Intergenic -359809 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 178.286-3 chr5 143917496 143918269 + 0.428571 NA Intergenic Intergenic 105721 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 123-11 chr3 170774244 170774803 + 0.428571 NA Intergenic Intergenic 95672 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 145.286 chr1 234526685 234527213 + 0.428571 NA TTS (NR_038426) TTS (NR_038426) 4830 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 106.071-3 chr10 62360249 62360547 + 0.428571 NA intron (NR_104162, intron 1 of 3) MLT2B3|LTR|ERVL -13759 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 113.286-2 chr1 218741251 218741744 + 0.428571 NA intron (NR_031644, intron 4 of 6) AluSc8|SINE|Alu 177014 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 104.786-9 chr21 17852598 17852870 + 0.428571 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 32874 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 142.428 chr2 14802755 14803213 + 0.428571 NA Intergenic L1PA2|LINE|L1 170267 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 146.572 chr1 209196361 209196954 + 0.428571 NA Intergenic L1ME4b|LINE|L1 -128799 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 121.428-2 chr4 61686190 61686595 + 0.428571 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 475373 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 99.1428-8 chr8 102198148 102198387 + 0.428571 NA Intergenic Intergenic 40564 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 101.286 chr1 63494867 63495191 + 0.428571 NA intron (NM_001347148, intron 1 of 7) AluJr|SINE|Alu 28244 NM_001347147 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 115.571 chr10 13676704 13677209 + 0.428571 NA intron (NM_001318336, intron 14 of 23) intron (NM_001318336, intron 14 of 23) 30611 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 123-16 chr7 22790769 22791327 + 0.428571 NA Intergenic AluSg|SINE|Alu 31801 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 100.071-6 chr3 191879741 191880036 + 0.428571 NA Intergenic MLT1L|LTR|ERVL-MaLR -358742 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 185 chr5 103621329 103621951 + 0.428571 NA Intergenic L2c|LINE|L2 -58851 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 120.214-8 chr4 61518337 61518761 + 0.428571 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 316377 NM_001371342 101.571 chr1 44274114 44274610 + 0.428571 NA intron (NM_001301698, intron 6 of 7) intron (NM_001301698, intron 6 of 7) -21803 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 130.571-3 chr4 87944751 87945198 + 0.428571 NA Intergenic L2a|LINE|L2 -30676 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 97.5-7 chr5 94767633 94767924 + 0.428571 NA intron (NM_001297777, intron 16 of 19) L1MA4|LINE|L1 149109 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 115.428-2 chr5 65328579 65329026 + 0.428571 NA intron (NR_135689, intron 9 of 25) intron (NR_135689, intron 9 of 25) 153118 NR_135689 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 106.143-15 chrX 82139829 82140115 + 0.428571 NA Intergenic L1M2|LINE|L1 937870 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 111-10 chr5 117097079 117097511 + 0.428571 NA Intergenic Intergenic -318217 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 104.714-10 chr8 79528987 79529346 + 0.428571 NA Intergenic L1MC|LINE|L1 -81951 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 128.286 chr11 60607662 60607979 + 0.428571 NA Intergenic MamGypLTR3a|LTR|Gypsy -7931 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 122.786-5 chr22 30919790 30920233 + 0.428571 NA intron (NR_146603, intron 1 of 2) intron (NR_146603, intron 1 of 2) 1768 NR_146603 107985544 Hs.638287 NR_146603 LOC107985544 - uncharacterized LOC107985544 ncRNA 100.929-10 chr7 7998245 7998606 + 0.428571 NA intron (NM_138426, intron 1 of 7) AluSx1|SINE|Alu 29629 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 132.286-4 chr20 58440414 58440957 + 0.428571 NA intron (NM_004738, intron 4 of 5) intron (NM_004738, intron 4 of 5) 51456 NR_036633 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 108-4 chr11 59934378 59935069 + 0.428571 NA Intergenic Intergenic -8156 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 132.214-5 chr8 138810870 138811429 + 0.428571 NA intron (NM_152888, intron 9 of 64) intron (NM_152888, intron 9 of 64) 102892 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 110.428-2 chr6 70990006 70990264 + 0.428571 NA Intergenic Intergenic -33075 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 133.714-6 chr20 16473164 16473692 + 0.428571 NA intron (NM_001199866, intron 12 of 22) L2b|LINE|L2 100020 NM_024704 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 139.571-2 chr10 54307723 54308151 + 0.428571 NA intron (NM_001354411, intron 8 of 34) MIRb|SINE|MIR -178293 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 112.714-6 chr2 125321661 125322041 + 0.428571 NA Intergenic L1M4b|LINE|L1 796134 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 128.428 chr1 112240074 112240630 + 0.428571 NA Intergenic MIR|SINE|MIR -155862 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 177 chr20 18593179 18593724 + 0.428571 NA intron (NM_080820, intron 1 of 5) MIR|SINE|MIR 5397 NM_001318043 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 130.571 chr10 84870357 84870661 + 0.428571 NA Intergenic L1PA17|LINE|L1 328396 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 124.928 chr2 11583363 11583697 + 0.428571 NA intron (NM_014668, intron 7 of 32) intron (NM_014668, intron 7 of 32) 40844 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 116-6 chr6 65967543 65967955 + 0.428571 NA Intergenic AluY|SINE|Alu 179870 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 125.571-8 chr3 19469875 19470260 + 0.428571 NA intron (NM_144633, intron 11 of 15) (ATTTT)n|Simple_repeat|Simple_repeat -155136 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 103.5-10 chr2 59476703 59477103 + 0.428571 NA Intergenic L1MA8|LINE|L1 259195 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 119.428-4 chr7 139224825 139225383 + 0.428571 NA Intergenic SVA_A|Retroposon|SVA -6133 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 139.857-6 chr9 122865068 122865735 + 0.428571 NA exon (NM_018835, exon 10 of 18) exon (NM_018835, exon 10 of 18) 14918 NR_003071 692206 Hs.693253 NR_003071 ENSG00000212447 SNORD90 HBII-295 small nucleolar RNA, C/D box 90 snoRNA 101.428-4 chr4 32117624 32117911 + 0.428571 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -95345 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 99.4285 chr11 82305221 82305563 + 0.428571 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 98521 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 104.857-5 chr2 177743267 177743764 + 0.428571 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 70193 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 112.286-14 chr3 139203125 139203600 + 0.428571 NA Intergenic Intergenic 30160 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 186.714 chr4 137520279 137520847 + 0.428571 NA 3' UTR (NM_001300828, exon 4 of 4) 3' UTR (NM_001300828, exon 4 of 4) 11931 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 117.143-11 chrUn_KI270438v1 105490 105877 + 0.428571 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 130.071-2 chr10 51876069 51876503 + 0.428571 NA intron (NM_001098512, intron 4 of 17) MamTip2|DNA|hAT-Tip100 -176691 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 116.214-5 chr7 4826626 4827059 + 0.428571 NA intron (NM_018059, intron 5 of 14) intron (NM_018059, intron 5 of 14) 10608 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 156.571-4 chr6 131109496 131110006 + 0.428571 NA Intergenic MIRc|SINE|MIR -25716 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 103.5-12 chr7 130923937 130924307 + 0.428571 NA Intergenic Intergenic 10658 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 118.214 chr1 196699288 196699611 + 0.428571 NA intron (NM_000186, intron 9 of 21) L1MC|LINE|L1 47571 NM_000186 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 122.143 chr11 81028048 81028362 + 0.428571 NA Intergenic Intergenic -265402 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 99.8571-2 chr10 71606073 71606540 + 0.428571 NA intron (NM_052836, intron 9 of 12) MER124|DNA?|DNA? -94386 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 123.714-9 chrUn_KI270466v1 383 1070 + 0.428571 NA NA SAR|Satellite|Satellite NA NA 104.786-7 chr2 146129485 146129861 + 0.428571 NA Intergenic L1PA16|LINE|L1 -457384 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 101.857-12 chr7 42238591 42238989 + 0.428571 NA Intergenic Intergenic -1581 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 103.786-3 chr14 81421438 81421869 + 0.428571 NA intron (NM_001366850, intron 2 of 7) intron (NM_001366850, intron 2 of 7) 6122 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 118.643 chr15 60707861 60708158 + 0.428571 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 26440 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 104.571-15 chr5 127470944 127471253 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger -46542 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 137.143-6 chr2 59889123 59889728 + 0.428571 NA Intergenic Intergenic 493611 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 181.5 chr12 94312838 94313433 + 0.428571 NA intron (NM_001042399, intron 13 of 15) intron (NM_001042399, intron 13 of 15) 50614 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 103.571-6 chr2 72512892 72513270 + 0.428571 NA intron (NR_135774, intron 11 of 19) intron (NR_135774, intron 11 of 19) 312952 NM_001321734 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 96.643 chr6 62372026 62372456 + 0.428571 NA Intergenic UCON55|DNA|TcMar-Tigger -86014 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 117.857-2 chr1 213252580 213252964 + 0.428571 NA intron (NM_001136138, intron 11 of 13) intron (NM_001136138, intron 11 of 13) 201531 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 108.571-7 chr6 53046537 53047078 + 0.428571 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 14995 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 150.5-3 chr11 28062167 28062678 + 0.428571 NA exon (NM_031217, exon 12 of 17) exon (NM_031217, exon 12 of 17) 5607 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 134.428-2 chr18 7778707 7779177 + 0.428571 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 211626 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 110.5 chr11 31189645 31190144 + 0.428571 NA intron (NM_001367979, intron 9 of 38) MLT1D|LTR|ERVL-MaLR 179845 NM_001367979 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 129.643-5 chr4 69712606 69713109 + 0.428571 NA Intergenic LTR32|LTR|ERVL 47763 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 119.786-2 chr17 48304158 48304686 + 0.428571 NA intron (NR_131239, intron 2 of 2) intron (NR_131239, intron 2 of 2) 10075 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 113.286-8 chr2 60546086 60546624 + 0.428571 NA intron (NM_138559, intron 1 of 4) intron (NM_138559, intron 1 of 4) 7143 NM_001365609 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 96.9285 chr1 80523762 80524088 + 0.428571 NA Intergenic Intergenic -11830 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 119.428-3 chr4 142061247 142061798 + 0.428571 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 424939 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 112.286-10 chr2 19152472 19152953 + 0.428571 NA Intergenic L1MB1|LINE|L1 -125741 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 112.286-9 chr2 14458147 14458483 + 0.428571 NA Intergenic MER66-int|LTR|ERV1 -57357 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 124.571-7 chr7 126868116 126868419 + 0.428571 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 189917 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 160.214 chr14 73344706 73345345 + 0.428571 NA intron (NM_001005743, intron 4 of 12) L1PA15|LINE|L1 -99024 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 138-4 chr19 31919752 31920237 + 0.428571 NA Intergenic THE1C|LTR|ERVL-MaLR -105868 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 139.286 chr11 31931495 31931986 + 0.428571 NA Intergenic MER3|DNA|hAT-Charlie 105173 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 146.857-4 chr20 46270962 46271353 + 0.428571 NA intron (NM_021248, intron 1 of 11) MIR|SINE|MIR 37341 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 131.143-3 chr2 74654127 74654552 + 0.428571 NA promoter-TSS (NM_004263) promoter-TSS (NM_004263) 92 NM_004263 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 161-4 chr8 80130992 80131641 + 0.428571 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 39805 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 110.357-2 chr14 60968272 60968641 + 0.428571 NA 3' UTR (NM_002431, exon 8 of 8) 3' UTR (NM_002431, exon 8 of 8) 12623 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 109.571-2 chr17 77563347 77564024 + 0.428571 NA non-coding (NR_040050, exon 2 of 2) non-coding (NR_040050, exon 2 of 2) 16744 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 138.5-6 chr5 11178651 11179030 + 0.428571 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) 410077 NM_001288716 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 98.3572-3 chr17 49192583 49192924 + 0.428571 NA Intergenic CpG 16628 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 115.857-6 chr3 116641625 116642194 + 0.428571 NA Intergenic Intergenic -67879 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 158.071 chr9 29920353 29920949 + 0.428571 NA Intergenic Intergenic 487803 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 104.143-10 chr4 153057429 153057810 + 0.428571 NA Intergenic Intergenic -94715 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 150.857-4 chr7 12671881 12672437 + 0.428571 NA Intergenic AluSx1|SINE|Alu -14668 NM_001037164 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 121.571-2 chr7 82339621 82340136 + 0.428571 NA intron (NM_000722, intron 2 of 38) MLT1D|LTR|ERVL-MaLR 103899 NM_000722 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 103.071-9 chr4 30211938 30212217 + 0.428571 NA Intergenic Intergenic -508292 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 98.7857-4 chr6 118190743 118191038 + 0.428571 NA intron (NM_001029858, intron 2 of 7) MER57-int|LTR|ERV1 104987 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 104.357-6 chr20 38774066 38774540 + 0.428571 NA Intergenic L1MB2|LINE|L1 25843 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M actin related protein 5 protein-coding 131.928 chr21 32750827 32751285 + 0.428571 NA intron (NR_027873, intron 9 of 17) intron (NR_027873, intron 9 of 17) 20699 NM_013329 94104 Hs.644004 NM_013329 ENSG00000159086 PAXBP1 BM020|C21orf66|FSAP105|GCFC|GCFC1 PAX3 and PAX7 binding protein 1 protein-coding 156.143-4 chr2 26244410 26244897 + 0.428571 NA promoter-TSS (NM_001281513) promoter-TSS (NM_001281513) -21 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 102.286-7 chr3 121326108 121326483 + 0.428571 NA intron (NM_001348343, intron 21 of 27) intron (NM_001348343, intron 21 of 27) 219693 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 104.286 chr10 11364577 11365127 + 0.428571 NA Intergenic AluSx|SINE|Alu -20178 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 96.4285-6 chr6 53784486 53784855 + 0.428571 NA Intergenic L1MA5A|LINE|L1 -10335 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 108.857-6 chr3 89055068 89055414 + 0.428571 NA Intergenic LTR53-int|LTR|ERVL -52380 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 108-6 chr12 120056424 120056734 + 0.428571 NA intron (NR_147894, intron 3 of 8) AluSg|SINE|Alu 60174 NM_001167606 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 105.214-12 chr3 94437123 94437476 + 0.428571 NA Intergenic MSTA|LTR|ERVL-MaLR 374238 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 99.9999 chr12 120153514 120153820 + 0.428571 NA intron (NM_006836, intron 32 of 57) intron (NM_006836, intron 32 of 57) 1832 NR_039719 100616179 NR_039719 ENSG00000266704 MIR4498 mir-4498 microRNA 4498 ncRNA 127.5-7 chr6 108272541 108273045 + 0.428571 NA Intergenic L1ME4b|LINE|L1 -11753 NM_001300929 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 103.286-2 chr12 10701573 10701899 + 0.428571 NA intron (NM_001145426, intron 7 of 8) intron (NM_001145426, intron 7 of 8) 21587 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 101.286-10 chr8 123253376 123253767 + 0.428571 NA exon (NM_007222, exon 3 of 4) exon (NM_007222, exon 3 of 4) -12194 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 137.5 chr10 109841155 109841663 + 0.428571 NA Intergenic Intergenic 81837 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 112.571-5 chr12 29735572 29735875 + 0.428571 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 48219 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 120.214-10 chr6 162452103 162452536 + 0.428571 NA intron (NM_004562, intron 1 of 11) L1MEf|LINE|L1 -274813 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 118.428-4 chr8 125267707 125268261 + 0.428571 NA intron (NM_001349486, intron 5 of 7) AluJb|SINE|Alu -162374 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 103.571-7 chr2 76841107 76841632 + 0.428571 NA intron (NR_146416, intron 1 of 1) L1PA4|LINE|L1 -144596 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 127.714-9 chr4 44023653 44023975 + 0.428571 NA Intergenic Intergenic 6752 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 114 chr1 164558502 164558844 + 0.428571 NA promoter-TSS (NM_001353131) promoter-TSS (NM_001353131) -687 NM_002585 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 134.786-7 chr6 150606746 150607060 + 0.428571 NA intron (NM_001329799, intron 1 of 15) intron (NM_001329799, intron 1 of 15) 7018 NM_001329804 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 131.071-4 chr8 121295263 121295983 + 0.428571 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -343723 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 177.5 chr21 30349401 30349930 + 0.428571 NA Intergenic Intergenic -1059 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 134-7 chr2 14712221 14712606 + 0.428571 NA Intergenic Intergenic 79696 NM_145175 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 104.571-11 chr3 59851146 59851584 + 0.428571 NA intron (NM_001354590, intron 7 of 8) MIRb|SINE|MIR -192868 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 102.857-9 chr6 28284533 28285077 + 0.428571 NA intron (NM_032507, intron 2 of 6) AluJr|SINE|Alu 3268 NM_032507 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 116.143-8 chr4 39722170 39722506 + 0.428571 NA intron (NM_001111113, intron 1 of 4) L1MC4|LINE|L1 24202 NM_001111113 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 99.6429-4 chr8 88945946 88946321 + 0.428571 NA Intergenic Intergenic -618650 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 143.143 chr1 2257535 2258034 + 0.428571 NA intron (NM_003036, intron 1 of 6) AluSp|SINE|Alu 29465 NM_003036 6497 Hs.656507 NM_003036 ENSG00000157933 SKI SGS|SKV SKI proto-oncogene protein-coding 114.143-7 chr8 87838621 87839029 + 0.428571 NA Intergenic L1M2|LINE|L1 35190 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 108.643-6 chr5 63709763 63710211 + 0.428571 NA Intergenic Intergenic 252305 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 110.143-9 chr19 31456407 31456803 + 0.428571 NA Intergenic L1MEg|LINE|L1 -107169 NR_138035 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 171.428 chr3 48408225 48408819 + 0.428571 NA intron (NM_002673, intron 34 of 37) intron (NM_002673, intron 34 of 37) 20941 NM_002673 5364 Hs.476209 NM_002673 ENSG00000164050 PLXNB1 PLEXIN-B1|PLXN5|SEP plexin B1 protein-coding 123-15 chr4 167522786 167523212 + 0.428571 NA Intergenic L1M8|LINE|L1 -288409 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 138-2 chr14 87191748 87192263 + 0.428571 NA Intergenic Intergenic 286227 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 147.643-4 chr7 107153754 107154201 + 0.428571 NA intron (NM_002736, intron 8 of 10) intron (NM_002736, intron 8 of 10) -14984 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 142.286 chr15 88861295 88861879 + 0.428571 NA intron (NM_013227, intron 13 of 17) intron (NM_013227, intron 13 of 17) 33957 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 139.571 chr10 31241291 31241762 + 0.428571 NA intron (NR_134478, intron 1 of 2) intron (NR_134478, intron 1 of 2) 53643 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 144.929-6 chr7 36297229 36297981 + 0.428571 NA intron (NM_030636, intron 7 of 7) intron (NM_030636, intron 7 of 7) 69635 NM_001199706 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 96.7142 chr8 124225965 124226342 + 0.428571 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 21245 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 207.714-2 chr6 44351171 44351968 + 0.428571 NA intron (NM_145026, intron 2 of 8) intron (NM_145026, intron 2 of 8) 8909 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 116.357 chr3 47511624 47512105 + 0.428571 NA intron (NM_001031703, intron 1 of 6) intron (NM_001031703, intron 1 of 6) 1481 NM_001363957 54859 Hs.311100 NM_017713 ENSG00000163832 ELP6 C3orf75|TMEM103 elongator acetyltransferase complex subunit 6 protein-coding 113.143 chr10 64468553 64469069 + 0.428571 NA Intergenic L1PB1|LINE|L1 -356717 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 118.429-4 chr7 26079279 26079906 + 0.428571 NA Intergenic Intergenic -72606 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 197.928 chr21 27643627 27644199 + 0.428571 NA Intergenic THE1D|LTR|ERVL-MaLR -78466 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 100.714-18 chr8 61135153 61135561 + 0.428571 NA Intergenic MLT1K|LTR|ERVL-MaLR -152613 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 137.428 chr8 29456830 29457329 + 0.428571 NA Intergenic AluSq2|SINE|Alu -106395 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 118.286 chr1 169369878 169370483 + 0.428571 NA intron (NM_003666, intron 2 of 7) MLT1C|LTR|ERVL-MaLR 1985 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 100.286-9 chr22 20078690 20079076 + 0.428571 NA Intergenic AluSx1|SINE|Alu -1349 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 97.1428-2 chr16 63553292 63553563 + 0.428571 NA Intergenic Intergenic -1516989 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 105.214-3 chr12 48195292 48195592 + 0.428571 NA Intergenic L1ME5|LINE|L1 7850 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 126.428 chr1 76091369 76091720 + 0.428571 NA intron (NM_001349108, intron 1 of 3) MIRb|SINE|MIR 16798 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 149.714-3 chr3 77319578 77320014 + 0.428571 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 221784 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 97.1428-6 chr4 52337441 52337882 + 0.428571 NA Intergenic Intergenic 286357 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 106.5-3 chr15 89573630 89573952 + 0.428571 NA Intergenic Intergenic -1678 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 129.571-3 chr13 44728104 44728518 + 0.428571 NA Intergenic MER21A|LTR|ERVL 81319 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 117.428-4 chr14 47256374 47256947 + 0.428571 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 86586 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 119.357 chr10 73650147 73650659 + 0.428571 NA intron (NM_001114133, intron 3 of 3) MIRb|SINE|MIR 637 NM_024875 79933 Hs.645273 NM_024875 ENSG00000166317 SYNPO2L - synaptopodin 2 like protein-coding 101.929-4 chr8 103758517 103758903 + 0.428571 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -60510 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 135 chr1 19526897 19527212 + 0.428571 NA Intergenic L1MB3|LINE|L1 -41515 NM_001313932 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 145.714-6 chr4 113466884 113467225 + 0.428571 NA intron (NM_001221, intron 14 of 18) intron (NM_001221, intron 14 of 18) 174215 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 112.714 chr11 31159381 31159854 + 0.428571 NA intron (NM_001367979, intron 9 of 38) X6B_LINE|LINE|CR1 -166931 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 157.571-4 chr6 83452551 83453072 + 0.428571 NA Intergenic L3|LINE|CR1 -21760 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 109.571-5 chr7 53220129 53220562 + 0.428571 NA Intergenic Intergenic 184712 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 102.429 chr14 83251382 83251702 + 0.428571 NA Intergenic Intergenic 608910 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 106.857-6 chr9 128901701 128902052 + 0.428571 NA intron (NM_001127244, intron 2 of 3) intron (NM_001127244, intron 2 of 3) -19106 NM_174933 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 106.857-5 chr6 48801902 48802234 + 0.428571 NA Intergenic Intergenic 661185 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 128.643-4 chr8 81646145 81646497 + 0.428571 NA Intergenic Intergenic -15044 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 117.429 chr1 39709636 39710058 + 0.428571 NA Intergenic Intergenic -18362 NM_001282397 51440 Hs.743975 NM_016257 ENSG00000116983 HPCAL4 HLP4 hippocalcin like 4 protein-coding 97.7142-7 chr8 48872823 48873130 + 0.428571 NA Intergenic L1MD1|LINE|L1 48453 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 108.786-3 chr2 29393137 29393706 + 0.428571 NA intron (NM_004304, intron 4 of 28) MER39|LTR|ERV1 81956 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 132.428 chr10 66567435 66567908 + 0.428571 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -358365 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 110.857-2 chr1 61316115 61316670 + 0.428571 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -62874 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 146.143-3 chr18 6777725 6778280 + 0.428571 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -48140 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 147.857 chr10 25309613 25310087 + 0.428571 NA intron (NM_020752, intron 2 of 10) THE1B|LTR|ERVL-MaLR -133574 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 132 chr10 59932308 59932839 + 0.428571 NA Intergenic LTR16B2|LTR|ERVL -26017 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 98.7143 chr16 52511709 52512229 + 0.428571 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 35174 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 132.5 chr10 82984812 82985236 + 0.428571 NA intron (NM_001370084, intron 9 of 9) MIRc|SINE|MIR 692065 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 101.214-3 chr17 76103209 76103762 + 0.428571 NA promoter-TSS (NM_001282313) promoter-TSS (NM_001282313) 86 NM_001282313 23265 Hs.514496 NM_015219 ENSG00000182473 EXOC7 2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 128.571-10 chr8 100697949 100698376 + 0.428571 NA Intergenic Intergenic 4862 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 96.9999-2 chr2 144512212 144512600 + 0.428571 NA non-coding (NR_033258, exon 3 of 3) non-coding (NR_033258, exon 3 of 3) -7208 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 158.143-4 chr9 26900274 26900875 + 0.428571 NA Intergenic Intergenic -7746 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 98.5713 chr3 110378092 110378457 + 0.428571 NA Intergenic Intergenic 691685 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 114.571-4 chr13 56373207 56373572 + 0.428571 NA Intergenic Intergenic -767529 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 168.643-4 chr2 105068206 105068643 + 0.428571 NA intron (NM_182640, intron 2 of 10) L1MC5a|LINE|L1 -29928 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 140.714-5 chr2 228055004 228055432 + 0.428571 NA intron (NM_030623, intron 3 of 10) intron (NM_030623, intron 3 of 10) 126427 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 120.643-3 chr11 85696032 85696467 + 0.428571 NA exon (NM_001365834, exon 7 of 8) exon (NM_001365834, exon 7 of 8) -10054 NM_152723 220388 Hs.376241 NM_152723 ENSG00000179071 CCDC89 - coiled-coil domain containing 89 protein-coding 162.928-2 chr5 75845847 75846333 + 0.428571 NA Intergenic Intergenic -128653 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 174.857 chr1 119788663 119789349 + 0.428571 NA Intergenic L1M7|LINE|L1 -20074 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 111.714-4 chr12 55526591 55527004 + 0.428571 NA Intergenic MLT1E|LTR|ERVL-MaLR -24430 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 100.643-6 chrX 58258033 58258377 + 0.428571 NA Intergenic GSATX|Satellite|centr -347572 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 167.929-3 chr4 168903112 168903712 + 0.428571 NA intron (NM_001367567, intron 4 of 11) intron (NM_001367567, intron 4 of 11) 71317 NM_001367567 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 108.428-2 chr12 91156691 91156970 + 0.428571 NA intron (NM_133505, intron 1 of 3) intron (NM_133505, intron 1 of 3) 21816 NM_133504 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 102.714-2 chr11 74819364 74819863 + 0.428571 NA intron (NM_001098638, intron 4 of 5) intron (NM_001098638, intron 4 of 5) 70764 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 112-7 chr3 61777226 61777781 + 0.428571 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 215932 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 111.857-11 chr3 103897771 103898331 + 0.428571 NA Intergenic AluJb|SINE|Alu -373935 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 103.714-13 chr3 26586267 26586615 + 0.428571 NA Intergenic MER113|DNA|hAT-Charlie -36365 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 143.357-2 chr12 51645998 51646424 + 0.428571 NA intron (NM_001369788, intron 1 of 25) L2|LINE|L2 54975 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 196.786 chr12 84556553 84557494 + 0.428571 NA Intergenic L1ME1|LINE|L1 355776 NM_001146335 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 109.714-7 chr3 165186024 165186435 + 0.428571 NA TTS (NM_001318810) TTS (NM_001318810) 10155 NM_001318810 22865 Hs.101745 NM_014926 ENSG00000121871 SLITRK3 - SLIT and NTRK like family member 3 protein-coding 98.3572-4 chr21 28410169 28410560 + 0.428571 NA Intergenic Intergenic -128954 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 101.857-10 chr5 44244991 44245373 + 0.428571 NA Intergenic Intergenic -143550 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 127.143-8 chr6 56689740 56690186 + 0.428571 NA intron (NM_001144770, intron 6 of 94) intron (NM_001144770, intron 6 of 94) -47074 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 97.1428-3 chr2 57500539 57501080 + 0.428571 NA Intergenic Intergenic -406842 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 101.143-6 chr16 57586968 57587381 + 0.428571 NA Intergenic Tigger4a|DNA|TcMar-Tigger -32564 NM_001290142 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 124.286-4 chr17 34745917 34746455 + 0.428571 NA Intergenic L1ME1|LINE|L1 165437 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 129.714-7 chr8 16533469 16534159 + 0.428571 NA Intergenic Intergenic -341023 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 124.714-2 chr10 59832073 59832420 + 0.428571 NA intron (NM_005436, intron 3 of 8) intron (NM_005436, intron 3 of 8) 74310 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 132.429 chr12 94147125 94147660 + 0.428571 NA Intergenic Intergenic -1185 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 106.072-3 chr2 195414143 195414571 + 0.428571 NA Intergenic L1M1|LINE|L1 -242601 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 129.357 chr16 65215428 65215970 + 0.428571 NA Intergenic Intergenic -39126 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 166.071 chr14 61240801 61241394 + 0.428571 NA Intergenic MER21B|LTR|ERVL 40241 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 181.5-5 chr9 22826788 22827516 + 0.428571 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 180952 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 114-8 chr4 65474698 65475141 + 0.428571 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 194569 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 154.071-3 chr5 16434819 16435325 + 0.428571 NA intron (NR_104625, intron 4 of 8) intron (NR_104625, intron 4 of 8) 6030 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 108.714-3 chr14 53991296 53991582 + 0.428571 NA Intergenic Intergenic -34548 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 126.929-3 chr18 43048426 43048773 + 0.428571 NA intron (NM_001272077, intron 1 of 5) MIR|SINE|MIR 67086 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 217.143 chr20 42228335 42228875 + 0.428571 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -456878 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 106.143-12 chr8 12877085 12877519 + 0.428571 NA Intergenic Intergenic -65824 NR_015383 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 100.286-6 chr14 50708868 50709182 + 0.428571 NA Intergenic Charlie1a|DNA|hAT-Charlie -40719 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 132.357-3 chr5 30617358 30617679 + 0.428571 NA Intergenic L1PA8|LINE|L1 -576168 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 111.786 chr10 77404482 77405203 + 0.428571 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 53970 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 104.143-7 chr18 63044373 63044778 + 0.428571 NA Intergenic Intergenic 274805 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 98.5714-2 chr2 123514469 123514795 + 0.428571 NA Intergenic Intergenic -441151 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 101.643-6 chr19 36383138 36383458 + 0.428571 NA 3' UTR (NM_001321919, exon 5 of 5) 3' UTR (NM_001321919, exon 5 of 5) -4097 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 117.357-3 chr17 73806481 73807223 + 0.428571 NA intron (NR_027146, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 20030 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 105.643-11 chr3 2119863 2120354 + 0.428571 NA intron (NR_046555, intron 2 of 2) intron (NR_046555, intron 2 of 2) 21242 NM_175607 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 115.714-5 chr14 55361441 55361830 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger 50223 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 116.143-6 chr20 8259466 8260076 + 0.428571 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 11067 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 159.643 chr13 49739451 49739933 + 0.428571 NA intron (NM_002267, intron 2 of 16) Charlie10b|DNA|hAT-Charlie -48205 NR_103803 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 97.7142-2 chr1 191119117 191119373 + 0.428571 NA Intergenic L2|LINE|L2 109253 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 106.714-8 chr15 60283054 60283626 + 0.428571 NA Intergenic Intergenic 114646 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 148.714 chr12 49177366 49177767 + 0.428571 NA Intergenic Charlie4z|DNA|hAT-Charlie 11514 NM_006009 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 141.428 chr4 57200235 57200640 + 0.428571 NA intron (NR_034081, intron 2 of 4) intron (NR_034081, intron 2 of 4) -90052 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 107.357-12 chr5 123665188 123665477 + 0.428571 NA Intergenic L1M7|LINE|L1 119915 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 118.857 chr18 69038418 69038825 + 0.428571 NA intron (NM_001093729, intron 9 of 9) intron (NM_001093729, intron 9 of 9) 240541 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 128.929-5 chr3 66364117 66364570 + 0.428571 NA intron (NM_001350992, intron 6 of 8) intron (NM_001350992, intron 6 of 8) 136078 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 142.143 chr10 95144664 95145277 + 0.428571 NA Intergenic THE1D|LTR|ERVL-MaLR -49230 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 102.428-2 chr2 74997945 74998311 + 0.428571 NA Intergenic AluSq2|SINE|Alu 39485 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 113.286-10 chr5 87745220 87745603 + 0.428571 NA Intergenic Intergenic 83369 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 107.143-2 chr1 190317361 190317993 + 0.428571 NA intron (NM_199051, intron 2 of 7) L2c|LINE|L2 158333 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 136.571 chr21 14541487 14541986 + 0.428571 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 4579 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 116.643-6 chr8 122156704 122156993 + 0.428571 NA Intergenic Intergenic 411796 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 122.857-6 chr2 126708388 126708940 + 0.428571 NA Intergenic AluSc|SINE|Alu 52506 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 101.428-2 chr3 95773320 95773647 + 0.428571 NA Intergenic L1PA17|LINE|L1 -90290 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 108.357-5 chr13 35992935 35993385 + 0.428571 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -137299 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 112.071-6 chr5 176993355 176993771 + 0.428571 NA intron (NM_001199298, intron 1 of 14) L1PA7|LINE|L1 12879 NM_016290 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 129.857-6 chr5 98055537 98056042 + 0.428571 NA Intergenic Intergenic 105450 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 112.643-4 chr22 35397690 35398152 + 0.428571 NA Intergenic MER67A|LTR|ERV1 -2219 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 120-6 chr5 25466133 25466513 + 0.428571 NA Intergenic Intergenic 275370 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 145.286-9 chr8 83676469 83677161 + 0.428571 NA Intergenic L1PREC2|LINE|L1 273057 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 108.214-7 chr7 89679707 89680124 + 0.428571 NA Intergenic (ATTTT)n|Simple_repeat|Simple_repeat -439485 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 109.571-3 chr21 29215833 29216169 + 0.428571 NA intron (NR_027072, intron 1 of 1) MER58A|DNA|hAT-Charlie 22507 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 98.1428 chr1 235909066 235909597 + 0.428571 NA Intergenic L2c|LINE|L2 -25618 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 98.2142 chr8 122339785 122340199 + 0.428571 NA Intergenic (TATTCT)n|Simple_repeat|Simple_repeat 228652 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 112 chr10 4371068 4371412 + 0.428571 NA Intergenic Intergenic -13006 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 154.929-2 chr10 106577558 106578051 + 0.428571 NA TTS (NM_001206571) TTS (NM_001206571) 437639 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 113.143-6 chr19 11149094 11149575 + 0.428571 NA 5' UTR (NM_001317033, exon 2 of 5) 5' UTR (NM_001317033, exon 2 of 5) 6448 NM_001317033 147841 Hs.381225 NM_182513 ENSG00000161888 SPC24 SPBC24 SPC24 component of NDC80 kinetochore complex protein-coding 158.143 chr1 157513937 157514661 + 0.428571 NA 3' UTR (NM_031281, exon 17 of 17) 3' UTR (NM_031281, exon 17 of 17) 38216 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 108.714-9 chr9 32880332 32880762 + 0.428571 NA Intergenic Intergenic 97007 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 120.143-5 chr11 88420513 88420873 + 0.428571 NA Intergenic Intergenic -82957 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 99.1428 chr11 35195075 35195403 + 0.428571 NA intron (NM_001202556, intron 5 of 7) intron (NM_001202556, intron 5 of 7) 32289 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 105.214-9 chr20 39516361 39516792 + 0.428571 NA Intergenic (TTTATT)n|Simple_repeat|Simple_repeat -291828 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 187.428 chr6 73460825 73461598 + 0.428571 NA promoter-TSS (NM_012123) promoter-TSS (NM_012123) -526 NM_133645 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 127-3 chr7 33757711 33758261 + 0.428571 NA Intergenic L1MA8|LINE|L1 -146929 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 96.6429-5 chr3 4226690 4227199 + 0.428571 NA Intergenic MER5A|DNA|hAT-Charlie -76360 NM_001276325 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 134.786-8 chr7 27766323 27766923 + 0.428571 NA intron (NM_001362794, intron 4 of 16) intron (NM_001362794, intron 4 of 16) 26528 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 103.143-11 chr4 152068340 152068929 + 0.428571 NA Intergenic Intergenic -32119 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 115.714-10 chr18 67754794 67755127 + 0.428571 NA intron (NR_033921, intron 1 of 4) L1MA4|LINE|L1 59862 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 110.357-4 chr5 160988091 160988605 + 0.428571 NA Intergenic MER21B|LTR|ERVL -49722 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 110.357-5 chr6 44376760 44377146 + 0.428571 NA intron (NM_145026, intron 8 of 8) intron (NM_145026, intron 8 of 8) -10753 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 116.143-2 chr11 37326935 37327345 + 0.428571 NA Intergenic Intergenic -611461 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 106.714-12 chr6 110510667 110510979 + 0.428571 NA Intergenic MER21C|LTR|ERVL -34210 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 97.9999-4 chr8 132093900 132094257 + 0.428571 NA intron (NM_001145095, intron 6 of 15) L1M5|LINE|L1 11187 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 102.143-4 chr14 66282624 66282952 + 0.428571 NA Intergenic L1MCc|LINE|L1 -203583 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 128.786-2 chr3 81741361 81741846 + 0.428571 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 20042 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 102-3 chr13 86161221 86161475 + 0.428571 NA Intergenic Intergenic -361929 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 113.572 chr2 57362637 57363121 + 0.428571 NA Intergenic L1MEf|LINE|L1 -544772 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 104.286-5 chr17 72156046 72156409 + 0.428571 NA Intergenic Intergenic 35207 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 161.857 chr8 87816609 87817203 + 0.428571 NA Intergenic Intergenic 57109 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 104.928 chr4 67979179 67979497 + 0.428571 NA Intergenic AluSz|SINE|Alu -15845 NM_182606 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 117.428-2 chr12 18838408 18838820 + 0.428571 NA Intergenic AluSx1|SINE|Alu 100495 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 102.571-9 chr7 6661199 6661580 + 0.428571 NA Intergenic HAL1ME|LINE|L1 24071 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 124-7 chr15 95664060 95664599 + 0.428571 NA Intergenic Intergenic 231236 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 127.5-4 chr2 98819460 98820047 + 0.428571 NA intron (NM_207362, intron 7 of 9) intron (NM_207362, intron 7 of 9) -47855 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 99.2144-2 chr22 26705621 26706043 + 0.428571 NA intron (NR_110543, intron 1 of 5) L1PA13|LINE|L1 32989 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 107.571-4 chr19 46943148 46943531 + 0.428571 NA intron (NM_004491, intron 3 of 6) intron (NM_004491, intron 3 of 6) -76498 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 125.571-4 chr12 64349469 64349856 + 0.428571 NA intron (NM_001099676, intron 2 of 10) L1PB1|LINE|L1 41096 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 173.286 chr8 129793251 129794059 + 0.428571 NA Intergenic L1MA3|LINE|L1 -7031 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 166.071-2 chr2 36039453 36040067 + 0.428571 NA Intergenic L1MC3|LINE|L1 315810 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 109-10 chr6 153787654 153788083 + 0.428571 NA Intergenic L1MEc|LINE|L1 -222628 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 101.143-11 chr4 176275208 176275570 + 0.428571 NA Intergenic Intergenic -6167 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 154.286-3 chr22 33864849 33865514 + 0.428571 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 55247 NM_004737 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 147.857-4 chr18 7832515 7833238 + 0.428571 NA intron (NM_002845, intron 2 of 30) L1MA2|LINE|L1 265560 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 101.857-11 chr5 147323279 147323640 + 0.428571 NA intron (NM_001112724, intron 4 of 12) intron (NM_001112724, intron 4 of 12) 88433 NM_145001 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 127.571 chr12 968713 969267 + 0.428571 NA intron (NM_001297419, intron 1 of 11) MER2|DNA|TcMar-Tigger -19268 NR_123713 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 111.643-6 chr5 33747556 33747894 + 0.428571 NA intron (NM_001324512, intron 3 of 21) L1ME3E|LINE|L1 144265 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 131.071-5 chrX 55968883 55969445 + 0.428571 NA intron (NM_001324105, intron 1 of 5) L1MA3|LINE|L1 60879 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 101.571-8 chr18 65275188 65275527 + 0.428571 NA Intergenic ERVL-int|LTR|ERVL -474895 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 163.214-2 chr22 19549075 19549594 + 0.428571 NA Intergenic Intergenic 17505 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 150.714-2 chr15 69177380 69177969 + 0.428571 NA intron (NM_001324093, intron 2 of 5) L1ME1|LINE|L1 17039 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 104.571-13 chr3 191538804 191539143 + 0.428571 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 77810 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 107-6 chr14 90854320 90854706 + 0.428571 NA 3' UTR (NM_001322234, exon 17 of 17) 3' UTR (NM_001322234, exon 17 of 17) -38083 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 113.571-3 chr10 58179766 58180160 + 0.428571 NA Intergenic MER21C|LTR|ERVL 87931 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 97.9285-2 chr3 37803334 37803619 + 0.428571 NA intron (NR_110532, intron 4 of 5) intron (NR_110532, intron 4 of 5) 58304 NR_110532 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 160.071 chr18 71566081 71566583 + 0.428571 NA intron (NR_038326, intron 1 of 4) intron (NR_038326, intron 1 of 4) 12624 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 101.786-4 chr14 49905214 49905551 + 0.428571 NA Intergenic MIRb|SINE|MIR 12300 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 124.071 chr1 27490257 27490554 + 0.428571 NA promoter-TSS (NM_001201404) promoter-TSS (NM_001201404) -238 NM_006990 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 112.428 chr10 13910389 13910689 + 0.428571 NA intron (NM_018027, intron 2 of 24) MLT1H|LTR|ERVL-MaLR 61357 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 117.643-2 chr12 60482158 60482617 + 0.428571 NA Intergenic Intergenic 793017 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 148.428 chr1 183487300 183487955 + 0.428571 NA intron (NM_001174061, intron 1 of 21) intron (NM_001174061, intron 1 of 21) 15128 NM_201568 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 134.857 chr10 44961527 44962188 + 0.428571 NA intron (NM_032023, intron 1 of 10) intron (NM_032023, intron 1 of 10) 2055 NM_032023 83937 Hs.522895 NM_032023 ENSG00000107551 RASSF4 AD037 Ras association domain family member 4 protein-coding 125.714-6 chr8 41368328 41368640 + 0.428571 NA Intergenic L1MC4|LINE|L1 -58171 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 136.5 chr15 68191657 68192121 + 0.428571 NA TTS (NM_001320687) TTS (NM_001320687) 14221 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 113.929-4 chr5 154859975 154860293 + 0.428571 NA intron (NM_004779, intron 1 of 6) MamRep137|DNA|TcMar-Tigger 1507 NM_001301075 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 138.428-2 chr7 144690547 144690927 + 0.428571 NA intron (NM_001042482, intron 3 of 7) L1MA7|LINE|L1 48161 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 175.5 chr1 159435473 159435922 + 0.428571 NA intron (NM_001363557, intron 4 of 4) intron (NM_001363557, intron 4 of 4) 3505 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 103.5-9 chr17 76090905 76091197 + 0.428571 NA intron (NM_001145297, intron 7 of 19) intron (NM_001145297, intron 7 of 19) 7025 NR_106928 102466753 NR_106928 ENSG00000275360 MIR6868 hsa-mir-6868 microRNA 6868 ncRNA 123.428-2 chr5 78602037 78602593 + 0.428571 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 46457 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 107.286-4 chr2 134081656 134082138 + 0.428571 NA Intergenic L1ME4b|LINE|L1 -38038 NM_001371457 116.429-2 chr1 190869927 190870232 + 0.428571 NA Intergenic Intergenic 245189 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 116.357-4 chr6 34108527 34108953 + 0.428571 NA intron (NM_001256809, intron 1 of 8) L2c|LINE|L2 2023 NM_001256812 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 135-6 chr17 67097987 67098408 + 0.428571 NA intron (NM_001330447, intron 31 of 32) intron (NM_001330447, intron 31 of 32) 53643 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 125.571-5 chr15 52619736 52620161 + 0.428571 NA intron (NM_019600, intron 2 of 12) Mam_R4|LINE|Dong-R4 32092 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 148.786 chr1 11934599 11935151 + 0.428571 NA intron (NM_000302, intron 1 of 18) CpG 158 NM_001316320 5351 Hs.75093 NM_000302 ENSG00000083444 PLOD1 EDS6|EDSKCL1|LH|LH1|LLH|PLOD procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 protein-coding 117.571-9 chr7 80133183 80133554 + 0.428571 NA Intergenic Intergenic -1463 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 114.643-6 chr4 41514058 41514490 + 0.428571 NA intron (NM_001289122, intron 2 of 25) L2b|LINE|L2 -23883 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 181.143 chr12 10471563 10472263 + 0.428571 NA Intergenic L1MA8|LINE|L1 -17228 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 107-8 chr17 74960479 74961108 + 0.428571 NA intron (NM_030630, intron 6 of 18) intron (NM_030630, intron 6 of 18) -9896 NR_110878 102723641 NR_110878 ENSG00000263586 HID1-AS1 - HID1 antisense RNA 1 ncRNA 118-6 chr8 140857197 140857666 + 0.428571 NA intron (NR_148037, intron 6 of 34) intron (NR_148037, intron 6 of 34) -124778 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 158.357-3 chr15 69137413 69137938 + 0.428571 NA Intergenic Intergenic -22922 NM_001324091 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 107-5 chr14 47028614 47029050 + 0.428571 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 314414 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 107-3 chr10 51800777 51801197 + 0.428571 NA intron (NM_001098512, intron 3 of 17) L2a|LINE|L2 -101392 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 97.7143-7 chr2 58790692 58791041 + 0.428571 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 270113 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 97.2857-8 chr8 101010848 101011161 + 0.428571 NA Intergenic Intergenic -41050 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 115.714-2 chr10 67843188 67843602 + 0.428571 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5207 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 126.214-6 chrX 56000689 56000983 + 0.428571 NA intron (NM_001324105, intron 1 of 5) intron (NM_001324105, intron 1 of 5) 92551 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 108.571-8 chr6 90159528 90159831 + 0.428571 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 137164 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 151.286-4 chr7 113969514 113970012 + 0.428571 NA Intergenic Intergenic -50754 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 96.5713 chr1 162691502 162691885 + 0.428571 NA intron (NM_006182, intron 2 of 17) MER63A|DNA|hAT-Blackjack 59229 NM_001014796 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 133.143 chr1 150777154 150777665 + 0.428571 NA Intergenic Intergenic -11631 NM_004079 1520 Hs.181301 NM_004079 ENSG00000163131 CTSS - cathepsin S protein-coding 117.5 chr1 56211498 56211772 + 0.428571 NA Intergenic Intergenic -203328 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 98.7858-5 chr7 51349639 51349996 + 0.428571 NA Intergenic Intergenic -32956 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 104.286-6 chr18 10238785 10239257 + 0.428571 NA Intergenic Intergenic 175349 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 107.714-18 chr9 76342436 76342923 + 0.428571 NA intron (NM_001190482, intron 34 of 36) L2b|LINE|L2 51747 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 129.571-2 chr10 65160725 65161124 + 0.428571 NA Intergenic Intergenic -236406 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 113.786-6 chr3 159400420 159400863 + 0.428571 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 117995 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 134.214-8 chr9 79455045 79455646 + 0.428571 NA Intergenic L1ME4a|LINE|L1 -116428 NM_001282760 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 107.357-3 chr11 120838163 120838748 + 0.428571 NA intron (NM_001282470, intron 7 of 19) intron (NM_001282470, intron 7 of 19) -19340 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 107.357-8 chr17 29150874 29151315 + 0.428571 NA intron (NM_001346765, intron 2 of 42) AluJr|SINE|Alu -10705 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 134.571-9 chr3 17377798 17378228 + 0.428571 NA intron (NM_014744, intron 9 of 21) intron (NM_014744, intron 9 of 21) 322007 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 116.786 chr11 11594199 11594569 + 0.428571 NA intron (NM_001363464, intron 1 of 9) L1MB7|LINE|L1 27621 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 98.2856 chr10 32852292 32852708 + 0.428571 NA intron (NM_001321115, intron 41 of 43) AluSx3|SINE|Alu 48972 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 153.214-5 chr5 36814730 36815194 + 0.428571 NA Intergenic L1MEi|LINE|L1 61732 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 120.143-2 chr1 205675932 205676336 + 0.428571 NA intron (NM_033102, intron 1 of 4) intron (NM_033102, intron 1 of 4) 4375 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 120.214-7 chr3 54198695 54199116 + 0.428571 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 76353 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 96.4285-4 chr2 2920518 2921087 + 0.428571 NA intron (NR_110228, intron 5 of 6) intron (NR_110228, intron 5 of 6) 205224 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 117.143-3 chr13 96867578 96868087 + 0.428571 NA Intergenic Intergenic 116340 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 99.6428-3 chr16 13772525 13772835 + 0.428571 NA Intergenic Intergenic -147477 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 115.214-4 chr6 121580367 121580950 + 0.428571 NA Intergenic L2|LINE|L2 145012 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 149.571 chr3 127551481 127551970 + 0.428571 NA Intergenic L2a|LINE|L2 -13945 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 108.571 chr14 82460738 82461235 + 0.428571 NA Intergenic Intergenic -181646 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 139.929 chr12 15232137 15232596 + 0.428571 NA Intergenic Intergenic -10949 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 131.857-8 chr8 78208694 78209226 + 0.428571 NA Intergenic Intergenic -307380 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 111.357-10 chr5 111703354 111703657 + 0.428571 NA intron (NR_040093, intron 2 of 6) LTR82B|LTR|ERVL 52746 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 152.572 chr1 111911510 111912184 + 0.428571 NA TTS (NR_046619) TTS (NR_046619) 2190 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 103.714-4 chr10 16392694 16393119 + 0.428571 NA Intergenic Intergenic -44037 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 109.714-2 chr10 20771474 20771853 + 0.428571 NA Intergenic MLT1B|LTR|ERVL-MaLR 125939 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 110.143-2 chr1 112110481 112110846 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger 120127 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 101.714-11 chr8 125754277 125754654 + 0.428571 NA Intergenic AluJr|SINE|Alu 196732 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 103.571-9 chr3 100251590 100251872 + 0.428571 NA Intergenic THE1D|LTR|ERVL-MaLR -9261 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 138-3 chr18 496344 496762 + 0.428571 NA intron (NM_130386, intron 1 of 9) intron (NM_130386, intron 1 of 9) 4148 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 114.428-3 chr2 99548437 99548842 + 0.428571 NA 3' UTR (NM_002285, exon 24 of 24) 3' UTR (NM_002285, exon 24 of 24) -58622 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 126.143-5 chr7 113543342 113543833 + 0.428571 NA Intergenic MLT1A0|LTR|ERVL-MaLR 375422 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 112-3 chr12 1730247 1730831 + 0.428571 NA intron (NM_024551, intron 1 of 7).2 AluYk3|SINE|Alu 39469 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 117.286-3 chr5 131236927 131237424 + 0.428571 NA Intergenic L1MEi|LINE|L1 -26834 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 194 chr18 3637314 3638183 + 0.428571 NA intron (NM_001242761, intron 7 of 11) AluJb|SINE|Alu 34011 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 98.857-2 chr7 113562196 113562603 + 0.428571 NA Intergenic MER58B|DNA|hAT-Charlie 356610 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 106.857-2 chr13 47073239 47073567 + 0.428571 NA Intergenic L1PA15|LINE|L1 -176327 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 102.214 chr10 16047702 16048012 + 0.428571 NA Intergenic LTR81C|LTR|Gypsy -187324 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 110.143-7 chr17 60775197 60775546 + 0.428571 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 97520 NM_001353145 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 129.643-2 chr10 80846855 80847444 + 0.428571 NA Intergenic L1PB4|LINE|L1 197352 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 159.286-2 chr12 70024527 70025060 + 0.428571 NA Intergenic L1M3|LINE|L1 199566 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 97.4999 chr12 13403658 13403906 + 0.428571 NA Intergenic Intergenic -27037 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 119.286-7 chr3 93997662 93998116 + 0.428571 NA intron (NM_001321328, intron 3 of 10) AluSx|SINE|Alu 17734 NM_001321328 200894 Hs.533086 NM_144996 ENSG00000169379 ARL13B ARL2L1|JBTS8 ADP ribosylation factor like GTPase 13B protein-coding 149.571-2 chr3 185717894 185718308 + 0.428571 NA intron (NR_126326, intron 2 of 7) MER58A|DNA|hAT-Charlie 4849 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 129.428 chr10 55568169 55568634 + 0.428571 NA intron (NM_001354404, intron 2 of 34) L1MB3|LINE|L1 -30641 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 131.571-4 chr8 91055920 91056416 + 0.428571 NA Intergenic Intergenic 14021 NR_110439 100506365 Hs.153412 NR_110438 ENSG00000253738 OTUD6B-AS1 GS1-251I9.4 OTUD6B antisense RNA 1 (head to head) ncRNA 109.5-4 chr15 89282615 89283122 + 0.428571 NA intron (NM_001113378, intron 16 of 37) intron (NM_001113378, intron 16 of 37) 38889 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 FA complementation group I protein-coding 126.857-3 chr12 15481112 15481529 + 0.428571 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -65291 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 109.714-11 chr9 11490947 11491412 + 0.428571 NA Intergenic Intergenic 877973 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 113.572-2 chr4 48350520 48350989 + 0.428571 NA intron (NM_020846, intron 1 of 7) intron (NM_020846, intron 1 of 7) 9225 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 137.714-3 chr2 54332701 54333150 + 0.428571 NA intron (NM_001369403, intron 1 of 3) intron (NM_001369403, intron 1 of 3) 2041 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 126.214-2 chr11 18293357 18293946 + 0.428571 NA intron (NM_181507, intron 14 of 22) intron (NM_181507, intron 14 of 22) 27387 NM_199161 6288 Hs.632144 NM_000331 ENSG00000173432 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 105.214-10 chr22 25551556 25551934 + 0.428571 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -12930 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 146.786-2 chr17 61684066 61684658 + 0.428571 NA intron (NM_032043, intron 19 of 19) intron (NM_032043, intron 19 of 19) -93143 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 112.071-8 chr9 136573670 136574044 + 0.428571 NA Intergenic L1ME4b|LINE|L1 26015 NR_121577 101928483 Hs.170035 NR_121577 NALT1 LINC01573|MIR4674HG|NALT|TCONS_l2_00029132 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 ncRNA 137.929-2 chr3 71727962 71728319 + 0.428571 NA intron (NM_173359, intron 2 of 7) intron (NM_173359, intron 2 of 7) 978 NM_001134650 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 167.857-2 chr4 109079474 109080087 + 0.428571 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 222878 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 120-2 chr10 29397937 29398270 + 0.428571 NA Intergenic Intergenic -11431 NR_110929 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 114.429-2 chr1 105732328 105732713 + 0.428571 NA Intergenic Intergenic -113585 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 121.714-3 chr2 101445569 101445958 + 0.428571 NA intron (NM_001367509, intron 4 of 13) L2b|LINE|L2 29349 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 136 chr17 55430959 55431294 + 0.428571 NA Intergenic MER67B|LTR|ERV1 -9291 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 104.5-3 chr14 65132480 65132877 + 0.428571 NA Intergenic MIR|SINE|MIR -29983 NR_073137 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 113.571-8 chr7 86916428 86916824 + 0.428571 NA intron (NM_001291991, intron 11 of 20) MER5A|DNA|hAT-Charlie 49273 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 112.571-8 chr4 100203347 100203827 + 0.428571 NA intron (NR_125924, intron 4 of 4) L1ME1|LINE|L1 -13119 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 99.8571-6 chr20 31572697 31572993 + 0.428571 NA non-coding (NR_046853, exon 2 of 3) non-coding (NR_046853, exon 2 of 3) 418 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 118.072 chr3 100330214 100330706 + 0.428571 NA Intergenic Intergenic -4297 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 96.7857-9 chr8 82511918 82512314 + 0.428571 NA Intergenic Intergenic -399988 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 149.857-7 chr6 151217787 151218287 + 0.428571 NA intron (NR_125868, intron 1 of 2) AluSz6|SINE|Alu 10420 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 148.5-3 chr22 35069295 35070077 + 0.428571 NA intron (NM_001303508, intron 2 of 4) intron (NM_001303508, intron 2 of 4) 3528 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 110.571-10 chr8 109249230 109249658 + 0.428571 NA intron (NM_032869, intron 8 of 9) intron (NM_032869, intron 8 of 9) 80489 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 120.143 chr1 94563569 94564078 + 0.428571 NA Intergenic Intergenic 20121 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 141.071 chr18 22670069 22670496 + 0.428571 NA Intergenic Intergenic 116555 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 97.7143-4 chr14 76526648 76527007 + 0.428571 NA Intergenic AluSz|SINE|Alu 155480 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 120.571-2 chr13 56401531 56401998 + 0.428571 NA Intergenic L1M1|LINE|L1 -739154 NM_001130407 729250 Hs.525056 NM_001130407 ENSG00000234278 PRR20E PRR20|PRR20A|PRR20B|PRR20C|PRR20D proline rich 20E protein-coding 103.143-8 chr17 28138633 28138941 + 0.428571 NA intron (NM_016231, intron 3 of 10) L2a|LINE|L2 -87776 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 103.143-4 chr14 85443440 85443782 + 0.428571 NA Intergenic Intergenic 49696 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 112.5-3 chr17 28246815 28247205 + 0.428571 NA promoter-TSS (NR_002181) promoter-TSS (NR_002181) -434 NR_002181 23614 Hs.744962 NR_002181 ENSG00000265060 PPY2P PPY2 pancreatic polypeptide 2, pseudogene pseudo 104.286-8 chr2 150518037 150518478 + 0.428571 NA Intergenic Intergenic -30562 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 130.071-3 chr11 123374068 123374487 + 0.428571 NA intron (NM_001367419, intron 1 of 20) intron (NM_001367419, intron 1 of 20) 7235 NR_039714 100616319 NR_039714 ENSG00000265357 MIR4493 - microRNA 4493 ncRNA 104.786-6 chr2 31413284 31413598 + 0.428571 NA intron (NM_000379, intron 1 of 35) intron (NM_000379, intron 1 of 35) 1301 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 147.428 chr2 66502004 66502385 + 0.428571 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -61864 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 122.143-8 chr8 128230471 128230990 + 0.428571 NA Intergenic HAL1b|LINE|L1 80614 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 134.143-2 chr19 28161883 28162303 + 0.428571 NA Intergenic L1MA8|LINE|L1 -368153 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 118.929-4 chr2 183699473 183699837 + 0.428571 NA Intergenic L1M2|LINE|L1 575212 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 108.643-2 chr15 96273345 96273755 + 0.428571 NA intron (NR_102743, intron 5 of 7) AluJb|SINE|Alu -52496 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 119.786-3 chr2 39541783 39542135 + 0.428571 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 104543 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 102.428 chr1 108557516 108557998 + 0.428571 NA Intergenic L2c|LINE|L2 -2343 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 115.928 chr6 158672870 158673248 + 0.428571 NA intron (NM_001242394, intron 5 of 17) AluJr|SINE|Alu 9656 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 113.428 chr19 51710076 51710524 + 0.428571 NA Intergenic L2b|LINE|L2 13691 NM_001523 3036 Hs.57697 NM_001523 ENSG00000105509 HAS1 HAS hyaluronan synthase 1 protein-coding 125.428 chr1 165437540 165437913 + 0.428571 NA intron (NR_033824, intron 1 of 1) intron (NR_033824, intron 1 of 1) 7400 NM_006917 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 104.143-5 chr16 6281593 6281869 + 0.428571 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 262028 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 123-8 chr20 33011084 33011446 + 0.428571 NA intron (NM_025227, intron 3 of 15) intron (NM_025227, intron 3 of 15) 3561 NM_025227 80341 Hs.257045 NM_025227 ENSG00000078898 BPIFB2 BPIL1|C20orf184|LPLUNC2|RYSR|dJ726C3.2 BPI fold containing family B member 2 protein-coding 167.214-2 chr5 36127747 36128197 + 0.428571 NA intron (NM_001007527, intron 6 of 17) L1MA3|LINE|L1 20016 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 105-11 chr2 77051143 77051401 + 0.428571 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 65307 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 102 chr12 40989950 40990412 + 0.428571 NA intron (NM_001843, intron 16 of 23) intron (NM_001843, intron 16 of 23) 81824 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 156.214-3 chr4 32605406 32605935 + 0.428571 NA Intergenic MSTA-int|LTR|ERVL-MaLR 254632 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 105.857-3 chr11 28025788 28026191 + 0.428571 NA intron (NM_031217, intron 15 of 16) intron (NM_031217, intron 15 of 16) -30826 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 102.714-6 chr2 60385122 60385771 + 0.428571 NA intron (NR_132992, intron 1 of 1) intron (NR_132992, intron 1 of 1) 1999 NR_039631 100616473 NR_039631 ENSG00000266078 MIR4432 - microRNA 4432 ncRNA 111.357-2 chr10 67670425 67670730 + 0.428571 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) -4892 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 106.571-6 chr8 28968072 28968459 + 0.428571 NA intron (NM_001324384, intron 2 of 10) intron (NM_001324384, intron 2 of 10) 76951 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 123.929-2 chr3 64412603 64413030 + 0.428571 NA Intergenic Intergenic -144643 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 117.857-3 chr1 234783277 234783678 + 0.428571 NA Intergenic MER39B|LTR|ERV1 -23421 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 97.1428-4 chr2 117980153 117980500 + 0.428571 NA intron (NM_019044, intron 7 of 23) intron (NM_019044, intron 7 of 23) 33744 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 144.929-5 chr6 166386838 166387240 + 0.428571 NA Intergenic Intergenic -4026 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 99.2143-6 chr9 38342541 38342959 + 0.428571 NA Intergenic L2b|LINE|L2 -49952 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 112.786-6 chr20 43752811 43753219 + 0.428571 NA Intergenic Intergenic -26013 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 110.571-8 chr3 4663183 4663603 + 0.428571 NA intron (NM_001168272, intron 15 of 60) AluJr|SINE|Alu 88197 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 131.071-3 chr5 43779357 43779860 + 0.428571 NA Intergenic Intergenic -176378 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 109-9 chr5 21177666 21178199 + 0.428571 NA Intergenic Charlie6|DNA|hAT-Charlie -281548 NR_027027 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 120.643-2 chr10 54822794 54823075 + 0.428571 NA intron (NM_001354404, intron 4 of 34) AluSz|SINE|Alu -21643 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 133.286-2 chr14 34026113 34026672 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger -75318 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 119.714-4 chr14 79552446 79552800 + 0.428571 NA intron (NR_073547, intron 15 of 20) LTR48|LTR|ERV1 273243 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 111-3 chr2 34512110 34512535 + 0.428571 NA Intergenic Intergenic -165235 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 111-7 chr4 94070446 94070924 + 0.428571 NA Intergenic Intergenic 136871 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 131.5-4 chr4 19238151 19238571 + 0.428571 NA Intergenic Intergenic -1013544 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 105-19 chr8 122551026 122551478 + 0.428571 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 17392 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 113.428-2 chr8 10691176 10691567 + 0.428571 NA intron (NM_001040032, intron 2 of 3).2 intron (NM_001040032, intron 2 of 3).2 18743 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 136.857-2 chr18 70029581 70030204 + 0.428571 NA intron (NM_001318520, intron 41 of 47) intron (NM_001318520, intron 41 of 47) -73093 NM_006566 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 130.714-6 chrX 22815694 22815999 + 0.428571 NA intron (NR_073010, intron 3 of 11) L2b|LINE|L2 -184114 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 103-10 chrX 42243303 42243684 + 0.428571 NA Intergenic MER5A|DNA|hAT-Charlie -319939 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 104.643-5 chr7 146316509 146316785 + 0.428571 NA Intergenic Intergenic -457624 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 121.428 chr12 122974677 122975136 + 0.428571 NA promoter-TSS (NM_001304833) promoter-TSS (NM_001304833) 180 NM_001304836 79676 Hs.524817 NM_024623 ENSG00000111325 OGFOD2 - 2-oxoglutarate and iron dependent oxygenase domain containing 2 protein-coding 97.7857-5 chr5 164744842 164745357 + 0.428571 NA Intergenic MamGypsy2-I|LTR|Gypsy 274820 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 109.5-9 chr8 115012226 115012704 + 0.428571 NA Intergenic L1MB1|LINE|L1 655548 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 106-11 chr7 85911946 85912372 + 0.428571 NA Intergenic L1PA14|LINE|L1 491037 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 135.214-6 chr3 96463728 96464187 + 0.428571 NA Intergenic Intergenic 103993 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 122.857-5 chr17 11139385 11139792 + 0.428571 NA Intergenic MLT2B2|LTR|ERVL -101625 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 125.357-3 chr2 69284239 69284778 + 0.428571 NA Intergenic MER2|DNA|TcMar-Tigger 102719 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 124.643-3 chr12 22925890 22926516 + 0.428571 NA Intergenic Intergenic -249433 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 129.571-6 chr9 77108952 77109301 + 0.428571 NA Intergenic MSTB1|LTR|ERVL-MaLR -68319 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 143.571 chr15 25814505 25814976 + 0.428571 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 34085 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 123.571-3 chr7 35727971 35728570 + 0.428571 NA Intergenic L1ME3G|LINE|L1 11833 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 112.071-4 chr3 101102542 101103160 + 0.428571 NA Intergenic Intergenic -109361 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 118.428 chr10 37826364 37826920 + 0.428571 NA intron (NR_148007, intron 6 of 9) intron (NR_148007, intron 6 of 9) 30968 NR_148002 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 128.571-5 chr11 100165058 100165467 + 0.428571 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -522026 NM_152432 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 155.214-2 chr16 50027988 50028468 + 0.428571 NA intron (NR_104043, intron 2 of 4) AluSx1|SINE|Alu 3022 NM_153261 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 160.714-3 chr14 90322034 90322754 + 0.428571 NA intron (NM_017970, intron 1 of 13) L2a|LINE|L2 9547 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 101.571-5 chr13 70965856 70966432 + 0.428571 NA Intergenic Intergenic -48997 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 147.428-3 chr8 83074480 83075062 + 0.428571 NA Intergenic L1M4|LINE|L1 162667 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 97.7142 chr1 5560275 5560600 + 0.428571 NA Intergenic L1ME1|LINE|L1 302304 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 100.286-10 chr3 121803900 121804175 + 0.428571 NA intron (NM_001023570, intron 7 of 14) L1MEc|LINE|L1 31023 NM_001023570 9657 Hs.604110 NM_001023570 ENSG00000173226 IQCB1 NPHP5|PIQ|SLSN5 IQ motif containing B1 protein-coding 118.428-3 chr2 11061939 11062349 + 0.428571 NA Intergenic L1MEf|LINE|L1 70032 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 145.714-4 chr2 226331284 226331939 + 0.428571 NA Intergenic Intergenic 188817 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 97.0714-5 chr2 169045344 169045619 + 0.428571 NA Intergenic L1MB5|LINE|L1 -14157 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 143.143-4 chr3 57148754 57149124 + 0.428571 NA intron (NM_001318864, intron 2 of 13) intron (NM_001318864, intron 2 of 13) 16414 NM_017563 54756 Hs.150725 NM_017563 ENSG00000144730 IL17RD HH18|IL-17RD|IL17RLM|SEF interleukin 17 receptor D protein-coding 106.428 chr3 49014429 49014872 + 0.428571 NA TTS (NM_001009996) TTS (NM_001009996) 3930 NM_001009996 55152 Hs.654815 NM_018114 ENSG00000178149 DALRD3 - DALR anticodon binding domain containing 3 protein-coding 143.786-7 chr8 90516294 90516764 + 0.428571 NA Intergenic AluSx|SINE|Alu 89534 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 149.143 chr12 22317569 22318115 + 0.428571 NA intron (NM_003034, intron 1 of 4) MLT1F2|LTR|ERVL-MaLR 16872 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 104.286-2 chr10 85069963 85070349 + 0.428571 NA Intergenic Tigger1|DNA|TcMar-Tigger 128749 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 123-2 chr10 51093119 51093686 + 0.428571 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 18915 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 117.857-7 chr16 61366014 61366351 + 0.428571 NA Intergenic Intergenic -310416 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 133.929-5 chr5 133659928 133660621 + 0.428571 NA Intergenic L2b|LINE|L2 -47733 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 124.714 chr1 208387268 208387726 + 0.428571 NA Intergenic MIRc|SINE|MIR -143113 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 111.286 chr1 196585129 196585477 + 0.428571 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) -2822 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 138.786-3 chr9 130138606 130138967 + 0.428571 NA 3' UTR (NM_001136557, exon 20 of 20) 3' UTR (NM_001136557, exon 20 of 20) 5433 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 167.286 chr1 73011089 73011556 + 0.428571 NA Intergenic Intergenic -294848 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 98-4 chr2 33631636 33631925 + 0.428571 NA Intergenic FLAM_A|SINE|Alu -32418 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 140.5 chr2 24519788 24520115 + 0.428571 NA intron (NM_001362952, intron 1 of 23) L1ME1|LINE|L1 28074 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 106.714-3 chr10 70576503 70576907 + 0.428571 NA Intergenic Intergenic 26036 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 175.286-6 chr7 104262702 104263456 + 0.428571 NA Intergenic L1MC1|LINE|L1 -55032 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 96.6429-8 chr6 162679772 162680159 + 0.428571 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -47167 NM_001080378 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 104.143-14 chr6 144791982 144792382 + 0.428571 NA intron (NM_007124, intron 61 of 73) intron (NM_007124, intron 61 of 73) 386527 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 97.857 chr10 34853168 34853441 + 0.428571 NA Intergenic AluJo|SINE|Alu 37536 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 114.714 chr2 80279284 80279608 + 0.428571 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 25306 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 123.286-6 chr2 21604818 21605283 + 0.428571 NA Intergenic Intergenic 105602 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 113.786-5 chr2 161355802 161356377 + 0.357143 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 47664 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 107.928 chr2 11137165 11137674 + 0.357143 NA intron (NM_182500, intron 1 of 3) intron (NM_182500, intron 1 of 3) 4291 NM_001371320 103.286-4 chr18 26051241 26051582 + 0.357143 NA intron (NM_001007559, intron 5 of 10) intron (NM_001007559, intron 5 of 10) 39202 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 134.071 chr1 52133771 52134386 + 0.357143 NA Intergenic AluY|SINE|Alu -8011 NM_007324 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 105.929-6 chr22 39518916 39519376 + 0.357143 NA Intergenic MIR3|SINE|MIR -1413 NM_001675 468 Hs.496487 NM_001675 ENSG00000128272 ATF4 CREB-2|CREB2|TAXREB67|TXREB activating transcription factor 4 protein-coding 98.643 chr1 22794454 22794850 + 0.357143 NA intron (NM_004442, intron 3 of 15) MIRb|SINE|MIR 68574 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 137.929-3 chr5 90408372 90408998 + 0.357143 NA intron (NM_001297765, intron 1 of 5) intron (NM_001297765, intron 1 of 5) 1101 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 99.4286-2 chr1 60570360 60570916 + 0.357143 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 52047 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 132.643-3 chr3 13083342 13083832 + 0.357143 NA Intergenic Intergenic -10158 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 100.571-9 chr6 52315602 52315942 + 0.357143 NA Intergenic Intergenic -31030 NM_001366370 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 104.143-4 chr10 98643460 98643834 + 0.357143 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) -196684 NM_001322476 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 101.857-6 chr19 50757593 50758147 + 0.357143 NA Intergenic AluSg|SINE|Alu -12594 NM_001506 2854 Hs.515555 NM_001506 ENSG00000142511 GPR32 RVDR1 G protein-coupled receptor 32 protein-coding 114.572 chr17 35543739 35544253 + 0.357143 NA Intergenic MLT1I|LTR|ERVL-MaLR -6135 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 99.2144 chr20 19240652 19241060 + 0.357143 NA intron (NM_020689, intron 1 of 16) LTR16A1|LTR|ERVL 28214 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 137.5-3 chr7 46094626 46095375 + 0.357143 NA Intergenic L1MB7|LINE|L1 -173728 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 105.643-6 chr18 7443558 7443881 + 0.357143 NA Intergenic Intergenic 17287 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 101.286-9 chr6 144763984 144764604 + 0.357143 NA intron (NM_007124, intron 57 of 73) intron (NM_007124, intron 57 of 73) 358639 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 115.857 chr1 27148634 27148980 + 0.357143 NA intron (NM_003047, intron 1 of 11) intron (NM_003047, intron 1 of 11) 6318 NM_003047 6548 Hs.469116 NM_003047 ENSG00000090020 SLC9A1 APNH|LIKNS|NHE-1|NHE1|PPP1R143 solute carrier family 9 member A1 protein-coding 138.429-3 chr18 3829208 3829844 + 0.357143 NA intron (NM_001242761, intron 4 of 11) MLT2C1|LTR|ERVL 15832 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 134.786-6 chr4 92513814 92514240 + 0.357143 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 209628 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 102.786 chr11 111557987 111558429 + 0.357143 NA intron (NM_178834, intron 6 of 6) (TATTT)n|Simple_repeat|Simple_repeat 17700 NM_001258390 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 97.5-4 chr3 30629961 30630442 + 0.357143 NA intron (NM_001024847, intron 2 of 7) intron (NM_001024847, intron 2 of 7) 23600 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 96.9287-4 chr7 25237842 25238272 + 0.357143 NA Intergenic Intergenic -9571 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 100.571-4 chr16 77490677 77491002 + 0.357143 NA Intergenic Intergenic -55805 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 100.286-7 chr2 53446258 53446739 + 0.357143 NA Intergenic Intergenic -321285 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 108.072 chr6 67505077 67505574 + 0.357143 NA Intergenic THE1B|LTR|ERVL-MaLR -550026 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 130.643-3 chr8 81067330 81067973 + 0.357143 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 44417 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 114.143-5 chr7 2027232 2027693 + 0.357143 NA intron (NM_001013837, intron 12 of 18) L1MEg|LINE|L1 61590 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 98.8572-5 chr6 121977646 121978007 + 0.357143 NA Intergenic MLT2B3|LTR|ERVL -421725 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 102.929-6 chr3 2598286 2598662 + 0.357143 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -293741 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 98.8571-5 chr5 151768152 151768652 + 0.357143 NA Intergenic Intergenic 3106 NR_132346 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 115.643-5 chr9 103620895 103621321 + 0.357143 NA Intergenic L1MA1|LINE|L1 -296075 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 96.5715-2 chr14 41224440 41224959 + 0.357143 NA Intergenic Intergenic 269988 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 130.429 chr1 117081627 117082152 + 0.357143 NA exon (NM_003594, exon 10 of 23) exon (NM_003594, exon 10 of 23) -12754 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 116.643-4 chr18 79311578 79312129 + 0.357143 NA intron (NR_148360, intron 16 of 31) intron (NR_148360, intron 16 of 31) -84077 NM_006162 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 106.071-2 chr1 151864525 151864854 + 0.357143 NA Intergenic Intergenic -10977 NM_182578 284486 Hs.132648 NM_182578 ENSG00000196407 THEM5 ACOT15 thioesterase superfamily member 5 protein-coding 98.2143-4 chrX 70541326 70541644 + 0.357143 NA intron (NM_001003811, intron 29 of 30) L1MD1|LINE|L1 -85491 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 139.143-3 chr13 34644727 34645203 + 0.357143 NA Intergenic Intergenic -4280 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 96.5-3 chr5 59403601 59404103 + 0.357143 NA intron (NM_001165899, intron 3 of 16) L1MA3|LINE|L1 -46882 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 118.857-4 chr3 53764408 53765060 + 0.357143 NA intron (NM_001128839, intron 30 of 45) intron (NM_001128839, intron 30 of 45) 81685 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 117.571-6 chr2 116999904 117000292 + 0.357143 NA Intergenic Intergenic -814593 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 97.9286-8 chr5 132475260 132475890 + 0.357143 NA intron (NR_161242, intron 3 of 3) MER81|DNA|hAT-Blackjack 15198 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 100.5-3 chr22 32613974 32614596 + 0.357143 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) 139048 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 101.214-2 chr10 79464974 79465469 + 0.357143 NA Intergenic L1MB7|LINE|L1 -19597 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 124.571-6 chr5 143997809 143998334 + 0.357143 NA Intergenic Intergenic 172588 NM_030799 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 102.5-4 chr9 108216988 108217435 + 0.357143 NA Intergenic Intergenic 638775 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 156.429-2 chr3 106174462 106174993 + 0.357143 NA Intergenic Intergenic -305326 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 114.429-3 chr10 19198688 19199284 + 0.357143 NA intron (NM_001142308, intron 14 of 39) intron (NM_001142308, intron 14 of 39) 150185 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 108.286-11 chr2 79484607 79485172 + 0.357143 NA Intergenic Intergenic 15955 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 106.786-7 chr7 2026072 2026630 + 0.357143 NA intron (NM_001013837, intron 12 of 18) L1MEg|LINE|L1 62701 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 122.714-4 chr21 19838546 19839134 + 0.357143 NA Intergenic L1M4c|LINE|L1 60915 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 96.4286 chr10 60943082 60943678 + 0.357143 NA promoter-TSS (NR_160732) promoter-TSS (NR_160732) 805 NM_001350910 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 99.4286-8 chr6 125011890 125012456 + 0.357143 NA intron (NM_152553, intron 3 of 8) intron (NM_152553, intron 3 of 8) 28805 NM_152553 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 115.786-2 chr1 78115761 78116266 + 0.357143 NA intron (NM_001304725, intron 3 of 5) THE1D|LTR|ERVL-MaLR 70047 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 116.071-2 chr17 26884545 26885367 + 0.357143 NA Intergenic ALR/Alpha|Satellite|centr 204285 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 115.786-5 chr6 154452296 154452750 + 0.357143 NA intron (NM_001368117, intron 1 of 12) intron (NM_001368117, intron 1 of 12) -18450 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 119.643-3 chr5 145071247 145071637 + 0.357143 NA Intergenic Intergenic 763900 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 111.929-5 chr7 69952736 69953138 + 0.357143 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 354462 NM_001127231 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 101.214-6 chr4 66303881 66304427 + 0.357143 NA Intergenic L1M4|LINE|L1 27330 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 113.929-3 chr3 194657607 194658153 + 0.357143 NA intron (NM_018385, intron 7 of 13) L3|LINE|CR1 14311 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 134-5 chr11 101489097 101489808 + 0.357143 NA intron (NM_004621, intron 3 of 12) L1M5|LINE|L1 30453 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 120.357-8 chr8 122818915 122819527 + 0.357143 NA intron (NM_001362797, intron 1 of 4) MIRc|SINE|MIR 37566 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 121.214 chr11 17305015 17305423 + 0.357143 NA intron (NM_001352669, intron 6 of 14) AluSx|SINE|Alu 28249 NM_001352672 4925 Hs.654599 NM_005013 ENSG00000070081 NUCB2 HEL-S-109|NEFA nucleobindin 2 protein-coding 137.286-4 chr5 13776341 13777004 + 0.357143 NA exon (NM_001369, exon 55 of 79) exon (NM_001369, exon 55 of 79) 167808 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 97.5715-3 chr8 136725022 136725531 + 0.357143 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 194478 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 121.357-3 chr2 81365100 81365560 + 0.357143 NA Intergenic Intergenic 101616 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 102.143-7 chr5 176652858 176653323 + 0.357143 NA intron (NM_130465, intron 4 of 8) intron (NM_130465, intron 4 of 8) 5606 NM_012171 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 113.429 chr20 8829509 8830039 + 0.357143 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) -1411 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 126.643 chr1 82823497 82823949 + 0.357143 NA Intergenic Intergenic -79460 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 102.929-2 chr12 13468815 13469222 + 0.357143 NA Intergenic Intergenic -92273 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 100-6 chr3 197953391 197953713 + 0.357143 NA intron (NM_000996, intron 3 of 4) L2a|LINE|L2 3362 NM_000996 6165 Hs.529631 NM_000996 ENSG00000182899 RPL35A DBA5|L35A|eL33 ribosomal protein L35a protein-coding 162.928 chr2 233092534 233093070 + 0.357143 NA intron (NM_001017915, intron 2 of 26).2 intron (NM_001017915, intron 2 of 26).2 32460 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 97.6429-4 chr9 27684560 27684873 + 0.357143 NA Intergenic MLT1I|LTR|ERVL-MaLR -110850 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 108.5-2 chr20 54646287 54646938 + 0.357143 NA intron (NM_018431, intron 7 of 7) MER113A|DNA|hAT-Charlie 171019 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 102.571-7 chr5 50342888 50343200 + 0.357143 NA Intergenic Intergenic 98244 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 105.714-2 chr10 36320889 36321247 + 0.357143 NA Intergenic L1MEc|LINE|L1 542766 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 100-5 chr3 103369394 103369724 + 0.357143 NA Intergenic Tigger1|DNA|TcMar-Tigger 154557 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 113.5-3 chr3 106993966 106994518 + 0.357143 NA Intergenic L1MA6|LINE|L1 246396 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 102.214-9 chr20 44370801 44371312 + 0.357143 NA intron (NM_175914, intron 1 of 9) intron (NM_175914, intron 1 of 9) 15255 NM_001287183 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 119.286-3 chr16 8628314 8628874 + 0.357143 NA intron (NR_134608, intron 2 of 9) intron (NR_134608, intron 2 of 9) 6896 NR_134608 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 117.714-9 chr8 117650298 117650824 + 0.357143 NA Intergenic Intergenic 129848 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 103.786 chr11 124140902 124141295 + 0.357143 NA intron (NM_001130142, intron 15 of 18) L2|LINE|L2 25648 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 117.5-5 chr4 106985770 106986218 + 0.357143 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 50319 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 159.214 chr14 30021214 30022110 + 0.357143 NA Intergenic Intergenic -93815 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 119.286-4 chr16 10932245 10932984 + 0.357143 NA non-coding (NR_104444, exon 18 of 18) non-coding (NR_104444, exon 18 of 18) 9854 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 170.929 chr6 120960733 120961356 + 0.357143 NA Intergenic Intergenic 373436 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 102.929 chr10 23125977 23126320 + 0.357143 NA Intergenic L1MEf|LINE|L1 30569 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 109.714-8 chr4 94985739 94986086 + 0.357143 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -10320 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 105.357-5 chr5 121715379 121716174 + 0.357143 NA Intergenic L1PB1|LINE|L1 -136106 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 103.071-5 chr18 8094210 8094920 + 0.357143 NA intron (NM_002845, intron 11 of 30) AluJo|SINE|Alu 272469 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 112.286-4 chr14_GL000225v1_random 19154 19623 + 0.357143 NA NA BSR/Beta|Satellite|Satellite NA NA 143.071 chr20 34747305 34747802 + 0.357143 NA intron (NM_001242539, intron 7 of 11) intron (NM_001242539, intron 7 of 11) 34851 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 116.786-2 chr12 124705650 124706374 + 0.357143 NA Intergenic Intergenic 133659 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 144.143-2 chr14 67250210 67250823 + 0.357143 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 9081 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 111.786-4 chr19 32318813 32319229 + 0.357143 NA Intergenic Intergenic -26589 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 106.214-6 chr7 34703913 34704471 + 0.357143 NA intron (NM_001300934, intron 2 of 6) L1M6|LINE|L1 45953 NM_001300934 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 116.429-8 chr6 115915343 115915726 + 0.357143 NA Intergenic MLT2B4|LTR|ERVL -123197 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 100.786-4 chr13 60770877 60771263 + 0.357143 NA Intergenic L1MC|LINE|L1 98115 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 105.214-8 chr17 40117101 40117484 + 0.357143 NA Intergenic Intergenic -4679 NM_001365919 339287 Hs.532786 NM_001012241 ENSG00000188895 MSL1 MSL-1 MSL complex subunit 1 protein-coding 122.5-3 chr17 73448077 73448564 + 0.357143 NA intron (NM_001144952, intron 4 of 44) intron (NM_001144952, intron 4 of 44) -65363 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 116.286-2 chr18 3755484 3755975 + 0.357143 NA intron (NM_001242762, intron 2 of 9) L1M4a2|LINE|L1 89629 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 99.9286 chr1 23982221 23982679 + 0.357143 NA Intergenic AluSx1|SINE|Alu -1987 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 119.214-5 chrX 81254928 81255481 + 0.357143 NA intron (NM_003022, intron 1 of 3) intron (NM_003022, intron 1 of 3) 53102 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 99.1428-2 chr11 131306117 131306420 + 0.357143 NA Intergenic Intergenic -64347 NM_001352001 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 138.214-3 chr5 77359949 77360652 + 0.357143 NA intron (NM_001029854, intron 9 of 20) intron (NM_001029854, intron 9 of 20) 132016 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 106.643-2 chr2 96413449 96413841 + 0.357143 NA Intergenic Intergenic 77879 NM_001281711 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 110.071-3 chr2 170211046 170211386 + 0.357143 NA intron (NM_001083615, intron 3 of 33) MER61-int|LTR|ERV1 33069 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 103.643-3 chr15 50807331 50807820 + 0.357143 NA Intergenic Intergenic -41869 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 112.286-15 chr4 28518527 28519132 + 0.357143 NA Intergenic Intergenic -300753 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 98.7857-3 chr3 177893425 177893737 + 0.357143 NA intron (NR_110826, intron 1 of 2) LTR67B|LTR|ERVL 76716 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 107.929 chr1 236047233 236047656 + 0.357143 NA intron (NM_002508, intron 2 of 19) intron (NM_002508, intron 2 of 19) 17646 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 120.357-7 chr8 86287834 86288370 + 0.357143 NA Intergenic Intergenic -54445 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 107.357-5 chr13 64220293 64220724 + 0.357143 NA Intergenic Intergenic -144497 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 161.786-2 chr2 198881010 198881651 + 0.357143 NA Intergenic Intergenic -506233 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 115.143-8 chrX 79106454 79106995 + 0.357143 NA Intergenic L1MB4|LINE|L1 -64248 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 115.357-10 chr9 36503176 36503807 + 0.357143 NA Intergenic AluJo|SINE|Alu -69371 NM_001256690 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 136.357-2 chr11 118168147 118168731 + 0.357143 NA intron (NM_004588, intron 2 of 3) intron (NM_004588, intron 2 of 3) 8200 NM_004588 6327 Hs.129783 NM_004588 ENSG00000149575 SCN2B ATFB14 sodium voltage-gated channel beta subunit 2 protein-coding 97.0001-2 chr14 58690351 58690670 + 0.357143 NA Intergenic Intergenic 51673 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 133.643 chr14 70924613 70925302 + 0.357143 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 17498 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 98.5714-6 chr7 50610915 50611226 + 0.357143 NA intron (NM_001350816, intron 12 of 17) intron (NM_001350816, intron 12 of 17) -45665 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 133.929-6 chr6 139758844 139759255 + 0.357143 NA Intergenic L1M2|LINE|L1 -12024 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 100.357-3 chr2 64632694 64633118 + 0.357143 NA 3' UTR (NM_014755, exon 2 of 2) 3' UTR (NM_014755, exon 2 of 2) 21007 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 120.357-3 chr3 57766895 57767242 + 0.357143 NA intron (NM_001304420, intron 1 of 21) AluSx1|SINE|Alu 9812 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 133.214-6 chr9 606526 607027 + 0.357143 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -79991 NM_001354335 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 113.929 chr10 123157094 123157568 + 0.357143 NA intron (NM_004725, intron 3 of 7) L2b|LINE|L2 2929 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 114.786-2 chr10 77482356 77482931 + 0.357143 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 131771 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 116.714-8 chr8 133188940 133189365 + 0.357143 NA Intergenic MLT1L|LTR|ERVL-MaLR -1887 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 98.5714-4 chr4 45930079 45930411 + 0.357143 NA Intergenic MER45R|DNA|hAT-Tip100 193809 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 120.786-2 chr14 67785692 67786104 + 0.357143 NA exon (NM_015346, exon 18 of 42) exon (NM_015346, exon 18 of 42) 30692 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 171.429 chr16 3968401 3969199 + 0.357143 NA intron (NM_001116, intron 10 of 10) L1ME3G|LINE|L1 -18356 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 109.857-2 chr15 66361970 66362537 + 0.357143 NA Intergenic AluSq|SINE|Alu -5537 NM_001289986 54962 Hs.744308 NM_017858 ENSG00000075131 TIPIN - TIMELESS interacting protein protein-coding 103.143-14 chr8 118978215 118978642 + 0.357143 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 26165 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 110.857-4 chr14 27018375 27018778 + 0.357143 NA Intergenic L1M4|LINE|L1 109934 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 100-3 chr11 3960066 3960564 + 0.357143 NA intron (NM_001277962, intron 1 of 12) Charlie1a|DNA|hAT-Charlie 104253 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 96.6428 chrX 22257642 22257962 + 0.357143 NA intron (NR_073010, intron 7 of 11) intron (NR_073010, intron 7 of 11) -15111 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 104.357 chr11 94633795 94634264 + 0.357143 NA intron (NR_135096, intron 4 of 6) L1ME4b|LINE|L1 66661 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 138.857-4 chr5 133402476 133403048 + 0.357143 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 24944 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 100.214-3 chr17 20066211 20066769 + 0.357143 NA intron (NM_001243439, intron 1 of 14) intron (NM_001243439, intron 1 of 14) -20532 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 170.357-2 chr7 50280108 50281091 + 0.357143 NA Intergenic L1MEd|LINE|L1 -23465 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 123.357 chr11 128428539 128429047 + 0.357143 NA Intergenic Intergenic 93517 NM_001162422 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 96.3572-4 chr3 126133018 126133375 + 0.357143 NA intron (NM_012190, intron 12 of 22) LTR55|LTR|ERVL? 29556 NR_046602 100874204 Hs.742339 NR_046602 ENSG00000250218 ALDH1L1-AS1 - ALDH1L1 antisense RNA 1 ncRNA 96.7857-5 chr3 95613199 95613548 + 0.357143 NA Intergenic Intergenic 69820 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 123-9 chr22 35132045 35132473 + 0.357143 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 66101 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 113.571-6 chr7 20414455 20414861 + 0.357143 NA 3' UTR (NM_002214, exon 14 of 14) 3' UTR (NM_002214, exon 14 of 14) -82896 NR_110120 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 133.714-9 chr4 64299082 64299512 + 0.357143 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 110153 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 147-5 chr22 24546987 24547436 + 0.357143 NA intron (NM_001284252, intron 3 of 5) intron (NM_001284252, intron 3 of 5) 7927 NM_001284254 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 101.5-4 chr2 154141552 154141885 + 0.357143 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 197324 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 166-2 chr4 64711558 64712376 + 0.357143 NA Intergenic Intergenic 292533 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 101.786-7 chr4 101351342 101351755 + 0.357143 NA Intergenic Intergenic 3771 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 117.714-8 chr5 176713896 176714355 + 0.357143 NA Intergenic Intergenic -29080 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 107-2 chr10 43754527 43754937 + 0.357143 NA Intergenic Intergenic 24093 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 144.714-2 chr6 57181799 57182279 + 0.357143 NA exon (NM_004282, exon 2 of 3) exon (NM_004282, exon 2 of 3) 9713 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 112.143 chr1 39553019 39553574 + 0.357143 NA intron (NR_144357, intron 4 of 11) intron (NR_144357, intron 4 of 11) 6402 NR_144354 728448 Hs.472508 NR_003929 ENSG00000243970 PPIEL PPIEP1 peptidylprolyl isomerase E like pseudogene pseudo 114.714-5 chr6 156559023 156559346 + 0.357143 NA Intergenic FLAM_A|SINE|Alu 180434 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 121-8 chr5 133012795 133013232 + 0.357143 NA intron (NR_131766, intron 1 of 4) AluYk3|SINE|Alu 13536 NR_131766 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 97.7858 chr15 25131877 25132340 + 0.357143 NA intron (NR_146177, intron 61 of 147) L1M4a1|LINE|L1 -3534 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 104.214-6 chr4 157934501 157934858 + 0.357143 NA Intergenic MLT1J1|LTR|ERVL-MaLR -236073 NR_147408 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 106.5-10 chr8 21624001 21624441 + 0.357143 NA Intergenic L2a|LINE|L2 164654 NM_001165039 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 110.286-2 chr11 45274740 45275099 + 0.357143 NA intron (NM_001247987, intron 1 of 7) intron (NM_001247987, intron 1 of 7) 11422 NM_020826 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 113.286-5 chr12 53102608 53103103 + 0.357143 NA promoter-TSS (NM_003578) promoter-TSS (NM_003578) -631 NM_003578 8435 Hs.656544 NM_003578 ENSG00000167780 SOAT2 ACACT2|ACAT2|ARGP2 sterol O-acyltransferase 2 protein-coding 122-3 chr11 102386488 102387014 + 0.357143 NA Intergenic L1MA8|LINE|L1 39377 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 98.0715 chr12 39705794 39706238 + 0.357143 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 79833 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 97.0714 chr1 63354970 63355444 + 0.357143 NA Intergenic Intergenic -12420 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 104.214-3 chr11 113834445 113834821 + 0.357143 NA intron (NM_001346268, intron 3 of 20) AluJo|SINE|Alu 40939 NM_001346257 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 153-3 chr7 39093475 39094152 + 0.357143 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -80246 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 127.786-3 chr4 41026414 41026927 + 0.357143 NA intron (NM_173075, intron 5 of 16) L1MB7|LINE|L1 -169478 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 103.857-2 chr10 23932369 23932792 + 0.357143 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 237853 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 101.786-8 chr5 124328783 124329106 + 0.357143 NA intron (NR_125774, intron 4 of 5) MIR|SINE|MIR 109576 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 105.786-5 chr19 53147958 53148540 + 0.357143 NA intron (NM_001172675, intron 4 of 4) L1M1|LINE|L1 10804 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 108.643-4 chr5 26016648 26016991 + 0.357143 NA Intergenic L1MB3|LINE|L1 825866 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 134.214-5 chr4 115721382 115721812 + 0.357143 NA Intergenic HAL1|LINE|L1 -578128 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 133-9 chr8 130164905 130165651 + 0.357143 NA intron (NM_001362925, intron 11 of 29) intron (NM_001362925, intron 11 of 29) -80510 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 139.643 chr12 111201937 111202453 + 0.357143 NA intron (NM_001370598, intron 1 of 21) intron (NM_001370598, intron 1 of 21) -101947 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 109.071-3 chr2 64676286 64676810 + 0.357143 NA Intergenic MIRb|SINE|MIR -22635 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 120.714-4 chr2 38373223 38373830 + 0.357143 NA intron (NM_001330462, intron 1 of 13) intron (NM_001330462, intron 1 of 13) 3004 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 110.643 chr10 123236954 123237445 + 0.357143 NA Intergenic MLT1K|LTR|ERVL-MaLR 82797 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 105.143-5 chr12 121709549 121710091 + 0.357143 NA Intergenic L2a|LINE|L2 -2932 NM_001080825 144404 Hs.644504 NM_001080825 ENSG00000188735 TMEM120B - transmembrane protein 120B protein-coding 98.2143 chr12 42620037 42620579 + 0.357143 NA intron (NR_110042, intron 5 of 5) LTR49-int|LTR|ERV1 26190 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LINC02402 - long intergenic non-protein coding RNA 2402 ncRNA 125.929-5 chr4 183616564 183617018 + 0.357143 NA Intergenic AluJr|SINE|Alu 42394 NM_152682 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 100.643-3 chr2 192085192 192085685 + 0.357143 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 109495 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 107 chr1 96259033 96259528 + 0.357143 NA intron (NR_110693, intron 5 of 5) intron (NR_110693, intron 5 of 5) 114845 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 103.786-9 chr8 74835545 74836024 + 0.357143 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 11250 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 119.571-4 chr17 43375023 43375663 + 0.357143 NA TTS (NR_027413) TTS (NR_027413) 13555 NR_027412 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 121-4 chr13 94491584 94492081 + 0.357143 NA intron (NM_001322184, intron 1 of 8) intron (NM_001322184, intron 1 of 8) -12150 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 116.714-2 chr11 43442515 43443259 + 0.357143 NA intron (NM_001307943, intron 17 of 19) intron (NM_001307943, intron 17 of 19) 83967 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 102.643-6 chr3 1839773 1840153 + 0.357143 NA Intergenic Intergenic -258840 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 131.357 chr3 126693779 126694286 + 0.357143 NA Intergenic MLT1J2|LTR|ERVL-MaLR -10208 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 116.929 chr17 16218054 16218546 + 0.357143 NA intron (NM_004278, intron 1 of 6) intron (NM_004278, intron 1 of 6) 1090 NM_004278 9487 Hs.499793 NM_004278 ENSG00000108474 PIGL CHIME phosphatidylinositol glycan anchor biosynthesis class L protein-coding 108.786-6 chr5 144392801 144393280 + 0.357143 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 187649 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 111.214-7 chr5 9789677 9790367 + 0.357143 NA intron (NR_027112, intron 4 of 12) MLT1I|LTR|ERVL-MaLR -64355 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 117.857-11 chr6 37818850 37819413 + 0.357143 NA promoter-TSS (NM_021943) promoter-TSS (NM_021943) -596 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 98.7858-2 chr10 88693142 88693504 + 0.357143 NA Intergenic Intergenic 28881 NM_004190 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 122.572-3 chr8 106802161 106802646 + 0.357143 NA Intergenic Intergenic -32159 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 112.714-11 chr6 39640487 39640998 + 0.357143 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 84666 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 103.071-8 chr2 205918511 205918924 + 0.357143 NA Intergenic Intergenic 167457 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 102.643-7 chr3 138648841 138649502 + 0.357143 NA Intergenic L1M2b|LINE|L1 40122 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 101.214 chr10 14486920 14487504 + 0.357143 NA Intergenic MER66B|LTR|ERV1 45502 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 105.929-4 chr10 60118447 60118861 + 0.357143 NA intron (NM_001204403, intron 26 of 43) intron (NM_001204403, intron 26 of 43) 22362 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 131.786-7 chr6 65232747 65233272 + 0.357143 NA intron (NM_001292009, intron 12 of 43) L1M4b|LINE|L1 -68409 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 124-8 chr20 52394369 52394993 + 0.357143 NA Intergenic Intergenic -202696 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 112.5 chr1 44818597 44819159 + 0.357143 NA TTS (NM_001166292) TTS (NM_001166292) 10396 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB domain containing 19 protein-coding 127.572 chr19 40505887 40506553 + 0.357143 NA intron (NM_020971, intron 12 of 35) intron (NM_020971, intron 12 of 35) -24271 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 130.643-2 chr7 103809586 103810167 + 0.357143 NA intron (NM_005045, intron 3 of 64) intron (NM_005045, intron 3 of 64) 179640 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 116.857-2 chr12 118524035 118524668 + 0.357143 NA Intergenic Intergenic 147796 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 104.5-4 chr3 161576993 161577454 + 0.357143 NA Intergenic Intergenic 80415 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 99.2858 chr18 60956345 60956746 + 0.357143 NA Intergenic L1MEd|LINE|L1 -376885 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 98.2858-3 chr8 144120334 144120702 + 0.357143 NA Intergenic AluJb|SINE|Alu 12779 NM_001316309 340390 Hs.98723 NM_032529 ENSG00000179698 WDR97 KIAA1875 WD repeat domain 97 protein-coding 101.214-8 chr5 35924988 35925327 + 0.357143 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 13465 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 101.643-5 chr15 53213580 53213954 + 0.357143 NA Intergenic Intergenic 97402 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 103.071 chr10 51959381 51959906 + 0.357143 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -260048 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 111.857-3 chr13 83019535 83019905 + 0.357143 NA Intergenic ERVL-B4-int|LTR|ERVL 862673 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 134.429-2 chr15 86634460 86634945 + 0.357143 NA intron (NM_152336, intron 22 of 24) L1MB7|LINE|L1 -298178 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 131.786-4 chr3 75045286 75045931 + 0.357143 NA Intergenic Intergenic -168868 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 103.786-8 chr6 51755690 51756149 + 0.357143 NA intron (NM_138694, intron 55 of 66) intron (NM_138694, intron 55 of 66) 134049 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 100.286-12 chr6 46990603 46991071 + 0.357143 NA Intergenic Intergenic -35898 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 128.786 chr14 48347787 48348335 + 0.357143 NA Intergenic Intergenic -553047 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 100.857-8 chr13 101590531 101590990 + 0.357143 NA intron (NM_001271754, intron 5 of 10) intron (NM_001271754, intron 5 of 10) 100808 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 116.286-7 chr9 69664761 69665113 + 0.357143 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 7434 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 167.928-2 chr4 112662206 112663117 + 0.357143 NA Intergenic AluSp|SINE|Alu -12610 NR_146092 109864269 Hs.642978 NR_146092 ENSG00000249532 MIR302CHG - miR-302/367 cluster host gene ncRNA 120.214-2 chr10 27911617 27912175 + 0.357143 NA intron (NM_001290021, intron 9 of 13) intron (NM_001290021, intron 9 of 13) 69975 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 108-5 chr12 45183654 45184064 + 0.357143 NA intron (NR_037144, intron 1 of 2) intron (NR_037144, intron 1 of 2) 32147 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 120.214-4 chr12 85946034 85946371 + 0.357143 NA Intergenic MER57A1|LTR|ERV1 71907 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 131.143-4 chr3 117426396 117426891 + 0.357143 NA Intergenic MLT1K|LTR|ERVL-MaLR 264282 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 103.429-3 chr11 92532760 92533465 + 0.357143 NA intron (NM_001008781, intron 2 of 24) AluJr|SINE|Alu 181016 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 148.714-2 chr4 89272104 89272743 + 0.357143 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 35377 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 100.5-4 chr4 122450058 122450406 + 0.357143 NA Intergenic ERVL-E-int|LTR|ERVL 6263 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 103.143-12 chr5 44807886 44808565 + 0.357143 NA promoter-TSS (NM_016640) promoter-TSS (NM_016640) 568 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 128.214-8 chr5 66762101 66762635 + 0.357143 NA intron (NM_001290228, intron 2 of 4) intron (NM_001290228, intron 2 of 4) -66405 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 100.072-2 chr13 112684696 112685090 + 0.357143 NA TTS (NM_207440) TTS (NM_207440) -5436 NM_032189 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 143.214-3 chr13 86696265 86696726 + 0.357143 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -215425 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 147.786 chr17 50893875 50894496 + 0.357143 NA Intergenic AluYa5|SINE|Alu -26207 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 130.572 chr6 4235542 4235975 + 0.357143 NA Intergenic LTR37B|LTR|ERV1 -45729 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 98.9286-3 chr4 58588500 58588950 + 0.357143 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -52397 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 120-5 chr2 211310538 211310948 + 0.357143 NA Intergenic L2|LINE|L2 693172 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 107.786-5 chr3 194318240 194318747 + 0.357143 NA Intergenic MSTB-int|LTR|ERVL-MaLR -5689 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 126.857-10 chr22 24726847 24727314 + 0.357143 NA intron (NM_001008496, intron 16 of 20) intron (NM_001008496, intron 16 of 20) -37421 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 112.571-2 chr10 17022070 17022419 + 0.357143 NA intron (NM_001081, intron 27 of 66) intron (NM_001081, intron 27 of 66) 107573 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 140.857 chr10 70014196 70014787 + 0.357143 NA Intergenic L1MC1|LINE|L1 -38355 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 115.357-5 chr2 184591456 184591895 + 0.357143 NA Intergenic Intergenic -6854 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 114.357-4 chr2 123839271 123839591 + 0.357143 NA Intergenic L1PA16|LINE|L1 185743 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 134.857-3 chr18 60129305 60129881 + 0.357143 NA Intergenic Intergenic 229597 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 145.286-8 chr6 152181064 152181862 + 0.357143 NA intron (NM_182961, intron 128 of 145) L1MB8|LINE|L1 3915 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 97.8572 chr10 55045670 55046121 + 0.357143 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -244604 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 108.643-3 chr20 10172397 10172921 + 0.357143 NA intron (NR_040710, intron 2 of 4) L2a|LINE|L2 -46139 NM_001322910 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 97.7858-5 chr8 77279811 77280269 + 0.357143 NA Intergenic L1PA13|LINE|L1 -170657 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 107.643-6 chr5 162668010 162668414 + 0.357143 NA Intergenic LTR39|LTR|ERV1 600570 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 105.428-3 chr3 122826312 122826831 + 0.357143 NA intron (NM_032839, intron 2 of 8) MIRb|SINE|MIR 31502 NM_032839 84925 Hs.477346 NM_032839 ENSG00000138463 SLC49A4 DIRC2|RCC4 solute carrier family 49 member 4 protein-coding 100.714 chr1 222229697 222230225 + 0.357143 NA Intergenic L2c|LINE|L2 -251441 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 99.7856-3 chr8 121032439 121032774 + 0.357143 NA Intergenic Intergenic -220560 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 111.929-3 chr20 43462757 43463444 + 0.357143 NA non-coding (NR_034009, exon 7 of 7) non-coding (NR_034009, exon 7 of 7) 5204 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 100.429-4 chr17 79995793 79996150 + 0.357143 NA intron (NM_019020, intron 3 of 11) L1MD1|LINE|L1 39901 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 97.4285-3 chr4 171860249 171860857 + 0.357143 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -46946 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 116.571-4 chr14 64476983 64477595 + 0.357143 NA TTS (NM_001354684) TTS (NM_001354684) 11790 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 127.286-8 chr8 103983918 103984307 + 0.357143 NA intron (NR_145711, intron 13 of 21) AluY|SINE|Alu 164892 NM_001348499 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 109.429-4 chr3 97483769 97484120 + 0.357143 NA exon (NM_001278300, exon 7 of 13) exon (NM_001278300, exon 7 of 13) 44337 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 122.786-6 chr4 21486950 21487675 + 0.357143 NA intron (NM_147182, intron 2 of 8) L1MC3|LINE|L1 -22554 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 102.5-3 chr8 121679851 121680400 + 0.357143 NA Intergenic Intergenic -38685 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 112.286 chr1 59198796 59199232 + 0.357143 NA Intergenic MIRc|SINE|MIR -52207 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 114.5 chr1 41513819 41514164 + 0.357143 NA intron (NM_024503, intron 7 of 8) MIR|SINE|MIR -29308 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 97.6429-3 chr8 80389902 80390336 + 0.357143 NA Intergenic AluSq2|SINE|Alu -95474 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 101.214-4 chr3 40250456 40250918 + 0.357143 NA intron (NM_001284424, intron 14 of 15) LTR16C|LTR|ERVL 59011 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 108.5-5 chr7 33103212 33103675 + 0.357143 NA intron (NM_203288, intron 1 of 5) HAL1|LINE|L1 5961 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 105.071-8 chr7 40503685 40504307 + 0.357143 NA intron (NM_001193312, intron 11 of 12) L1MA9|LINE|L1 369020 NM_024728 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 107.357-7 chr16 12257285 12257679 + 0.357143 NA intron (NM_032167, intron 14 of 20) MLT1E2|LTR|ERVL-MaLR 280748 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 107-11 chr9 20318025 20318546 + 0.357143 NA Intergenic L2c|LINE|L2 92953 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 124.643-2 chr11 90907432 90907853 + 0.357143 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -38440 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 154.214-3 chr7 33584175 33584656 + 0.357143 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -320500 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 141.929-2 chr4 150149498 150150028 + 0.357143 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 71318 NM_001040261 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 142.643-3 chr3 122743402 122743891 + 0.357143 NA intron (NM_001320728, intron 5 of 6) L1MB7|LINE|L1 50185 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 99.4286-9 chr7 72017588 72018029 + 0.357143 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 319583 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 139.643-2 chr13 112716408 112716964 + 0.357143 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 26357 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 121.143-8 chr8 85967175 85967678 + 0.357143 NA Intergenic L1ME3E|LINE|L1 102242 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 151.357-3 chr12 34676213 34677056 + 0.357143 NA Intergenic ALR/Alpha|Satellite|centr 654138 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 129.143-4 chr21 27018795 27019208 + 0.357143 NA Intergenic Tigger2a|DNA|TcMar-Tigger -51913 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 141.5-4 chr7 30606896 30607358 + 0.357143 NA intron (NM_002047, intron 6 of 16) L1MC5|LINE|L1 12249 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 98.3572-5 chr3 185880558 185880938 + 0.357143 NA Intergenic MER44B|DNA|TcMar-Tigger -55706 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 125.357-5 chr7 1169156 1169760 + 0.357143 NA Intergenic Intergenic 8673 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 97.6429 chr2 37674037 37674579 + 0.357143 NA Intergenic Intergenic -1773 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 104.929-7 chr8 89903635 89904108 + 0.357143 NA intron (NM_001126111, intron 1 of 5) Charlie4a|DNA|hAT-Charlie 1301 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 114.429-10 chr8 136363340 136363792 + 0.357143 NA Intergenic ERVL-E-int|LTR|ERVL -167232 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 123.143-7 chr5 11941364 11942059 + 0.357143 NA Intergenic Intergenic -37265 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 153.357-3 chr4 153344497 153345132 + 0.357143 NA intron (NM_032117, intron 1 of 7) CpG 126 NM_032117 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 96.9287 chr3 176153485 176153863 + 0.357143 NA Intergenic Intergenic -90877 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 124.643-4 chr14 77174045 77174514 + 0.357143 NA Intergenic L1ME3B|LINE|L1 -7519 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 117.929-2 chr2 157802686 157803100 + 0.357143 NA intron (NM_001111067, intron 2 of 10) L2b|LINE|L2 35737 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 99.5001 chr17 67595561 67596029 + 0.357143 NA intron (NM_181671, intron 5 of 9) intron (NM_181671, intron 5 of 9) -122038 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 108.214-4 chr20 43499361 43499840 + 0.357143 NA Intergenic AluJr4|SINE|Alu -8097 NM_032107 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 127.286-5 chr4 73472887 73473440 + 0.357143 NA Intergenic L1PA13|LINE|L1 -8582 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 117.071-7 chr6 159476801 159477450 + 0.357143 NA Intergenic Intergenic 93594 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 120.929-3 chr7 18295567 18295948 + 0.357143 NA intron (NM_001321896, intron 1 of 12) MER20|DNA|hAT-Charlie 5665 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 104.786-10 chr3 137448241 137448570 + 0.357143 NA Intergenic Intergenic -315910 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 126.143-3 chr2 105688750 105689245 + 0.357143 NA Intergenic Intergenic -55915 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 112.143-2 chr1 174449435 174450149 + 0.357143 NA TTS (NM_005684) TTS (NM_005684) 1828 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 100.143-9 chr3 20681399 20681708 + 0.357143 NA Intergenic L1PA15|LINE|L1 339085 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 106.429-8 chr6 66615071 66615496 + 0.357143 NA Intergenic MER101-int|LTR|ERV1 827404 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 120.286-2 chr2 71899309 71899723 + 0.357143 NA Intergenic THE1C|LTR|ERVL-MaLR 248346 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 144.214-3 chr7 11384577 11385104 + 0.357143 NA intron (NM_015204, intron 22 of 26) L1M5|LINE|L1 410968 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 111.071-2 chr12 127413773 127414199 + 0.357143 NA Intergenic L2b|LINE|L2 -73914 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 106.214-4 chr5 28863721 28864196 + 0.357143 NA Intergenic MIR|SINE|MIR -62912 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 139-3 chr16 84540195 84540858 + 0.357143 NA Intergenic LTR40a|LTR|ERVL -35867 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 97.9286-6 chr16 70632185 70632819 + 0.357143 NA intron (NM_001172772, intron 1 of 6) intron (NM_001172772, intron 1 of 6) 8510 NM_001172772 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 144.071 chr5 38474295 38475110 + 0.357143 NA TTS (NM_002310) TTS (NM_002310) 29156 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 168 chr14 43641625 43642236 + 0.357143 NA Intergenic L1PB2|LINE|L1 865353 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 96.3571-5 chr22 34797319 34797758 + 0.357143 NA intron (NR_138042, intron 3 of 4) L2b|LINE|L2 200378 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 117.143-10 chr5 61018262 61018613 + 0.357143 NA intron (NM_174889, intron 1 of 3) MER63D|DNA|hAT-Blackjack 73232 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 104.786-3 chr11 32617578 32618027 + 0.357143 NA intron (NM_001008391, intron 14 of 17) L2c|LINE|L2 33971 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 122.929-5 chr7 9711316 9711724 + 0.357143 NA Intergenic Intergenic 77250 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 119.5 chr11 114811238 114811832 + 0.357143 NA Intergenic Intergenic 133008 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 97.7857-2 chr11 120353266 120353719 + 0.357143 NA intron (NM_015313, intron 1 of 40) L3|LINE|CR1 17079 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 100.071 chr1 160188004 160188412 + 0.357143 NA Intergenic Intergenic -2367 NM_001231 844 Hs.632476 NM_001231 ENSG00000143318 CASQ1 CASQ|PDIB1|VMCQA calsequestrin 1 protein-coding 143.143-3 chr1 196358623 196359252 + 0.357143 NA intron (NR_146057, intron 13 of 26) intron (NR_146057, intron 13 of 26) 223544 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 109.071 chr10 103618048 103618524 + 0.357143 NA intron (NM_014631, intron 9 of 13) intron (NM_014631, intron 9 of 13) 59929 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 100.929-4 chr2 8473877 8474384 + 0.357143 NA Intergenic Intergenic 109662 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 125.714-4 chr6 109493788 109494374 + 0.357143 NA exon (NM_001145128, exon 40 of 41) exon (NM_001145128, exon 40 of 41) -10844 NM_001164313 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 148.643 chr12 116488975 116489691 + 0.357143 NA Intergenic Intergenic -44089 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 160.5-3 chr2 224094081 224094610 + 0.357143 NA Intergenic Intergenic -55026 NM_001136528 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 98.3572-2 chr11 103927963 103928317 + 0.357143 NA intron (NM_025208, intron 5 of 6) intron (NM_025208, intron 5 of 6) 78234 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 125.5 chr12 49782564 49783166 + 0.357143 NA Intergenic Intergenic 41056 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 113.786-7 chr4 112822557 112823081 + 0.357143 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) 4822 NM_001354262 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 96.7857 chr1 68764070 68764478 + 0.357143 NA Intergenic L1PB1|LINE|L1 -267192 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 120.071-2 chr2 72267483 72267854 + 0.357143 NA intron (NR_135773, intron 19 of 21) L1PA3|LINE|L1 -119806 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 105.929 chr1 24211223 24211841 + 0.357143 NA non-coding (NR_027087, exon 3 of 3) non-coding (NR_027087, exon 3 of 3) 11292 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 97.2143-3 chr4 74407708 74408060 + 0.357143 NA Intergenic Intergenic -37252 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 102.786-8 chr7 17633155 17633597 + 0.357143 NA Intergenic Intergenic -74467 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 117.429-4 chr5 9017408 9018030 + 0.357143 NA Intergenic AluY|SINE|Alu 36176 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 144.286-3 chr20 49139354 49139942 + 0.357143 NA intron (NM_004602, intron 5 of 13) AluSq|SINE|Alu 48722 NM_001322932 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 103-8 chr5 4016777 4017230 + 0.357143 NA Intergenic THE1B|LTR|ERVL-MaLR 421171 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 129.429-2 chr3 151977393 151977796 + 0.357143 NA Intergenic L1ME3F|LINE|L1 -49419 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 98.1429-2 chr11 93656776 93657069 + 0.357143 NA Intergenic Intergenic -4760 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 105.143-2 chr10 88658488 88659125 + 0.357143 NA Intergenic AluSz|SINE|Alu -5636 NM_001198829 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 110.5-8 chr20 22140617 22141145 + 0.357143 NA Intergenic AluJb|SINE|Alu 86791 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 128.929 chr1 96986709 96987388 + 0.357143 NA Intergenic MLT2A2|LTR|ERVL -108875 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 126.786-8 chr3 105257084 105257489 + 0.357143 NA Intergenic L1MC4a|LINE|L1 -109427 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 96.5715 chr11 80888408 80888883 + 0.357143 NA Intergenic Intergenic -125842 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 105.929-3 chr10 58400810 58401345 + 0.357143 NA Intergenic L1M4|LINE|L1 15667 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 114.429 chr1 13601387 13601886 + 0.357143 NA intron (NM_001006624, intron 1 of 5) AluSz6|SINE|Alu 16176 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 104.929 chr1 91418142 91418592 + 0.357143 NA Intergenic MLT1J2|LTR|ERVL-MaLR -13530 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 179.5 chr9 90336856 90337689 + 0.357143 NA intron (NR_109795, intron 2 of 2) L1MCa|LINE|L1 96217 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 127.286-7 chr5 152176662 152177269 + 0.357143 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 218067 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 107.143-3 chr11 83338850 83339264 + 0.357143 NA Intergenic Intergenic -52650 NM_021825 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 98.1428-3 chr4 174250886 174251404 + 0.357143 NA intron (NM_012180, intron 3 of 5) intron (NM_012180, intron 3 of 5) -30747 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 134.571 chr1 104984572 104985145 + 0.357143 NA Intergenic L1MA4|LINE|L1 634077 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 104.786 chr10 81400431 81400906 + 0.357143 NA Intergenic MER21C|LTR|ERVL -474526 NR_163251 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 107.429-9 chr9 27569580 27570086 + 0.357143 NA intron (NM_145005, intron 1 of 4) intron (NM_145005, intron 1 of 4) 3648 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 103.214 chr1 187711953 187712363 + 0.357143 NA Intergenic Intergenic 268530 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 101.214-5 chr3 60646956 60647433 + 0.357143 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) -29324 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 99.2143-3 chr3 78136704 78137122 + 0.357143 NA Intergenic MER50|LTR|ERV1 -87950 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 118.786-4 chr8 119168942 119169349 + 0.357143 NA Intergenic Intergenic -39218 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 98.7857-2 chr14 51442350 51442803 + 0.357143 NA Intergenic Intergenic -45441 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 97.2858-2 chr21 44329444 44329804 + 0.357143 NA 3' UTR (NM_004928, exon 7 of 7) 3' UTR (NM_004928, exon 7 of 7) 8714 NM_001271442 755 Hs.517331 NM_004928 ENSG00000160226 CFAP410 C21orf2|LRRC76|RDMS|SMDAX|YF5/A2 cilia and flagella associated protein 410 protein-coding 147.5 chr2 22199958 22200454 + 0.357143 NA Intergenic Intergenic -336273 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 124.571-4 chr3 31047980 31048533 + 0.357143 NA Intergenic MIRc|SINE|MIR 113531 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 103.214-10 chr2 216159874 216160328 + 0.357143 NA exon (NM_021141, exon 15 of 21) exon (NM_021141, exon 15 of 21) 50753 NM_021141 7520 Hs.388739 NM_021141 ENSG00000079246 XRCC5 KARP-1|KARP1|KU80|KUB2|Ku86|NFIV X-ray repair cross complementing 5 protein-coding 122.857-7 chr20 5045842 5046542 + 0.357143 NA Intergenic L1M3|LINE|L1 -35879 NM_203327 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 117.5-4 chr2 182732967 182733437 + 0.357143 NA intron (NM_001271581, intron 10 of 22) L1MEg|LINE|L1 16945 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 104.714-7 chr4 79746196 79746687 + 0.357143 NA Intergenic Intergenic -81030 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 137.429-3 chr16 4807443 4807912 + 0.357143 NA intron (NM_001324098, intron 14 of 14) L1MEd|LINE|L1 -4727 NM_024589 79641 Hs.459795 NM_024589 ENSG00000067836 ROGDI KTZS rogdi atypical leucine zipper protein-coding 112.857-5 chr17 69809627 69810084 + 0.357143 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -151852 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 108.286-6 chr10 58177383 58177859 + 0.357143 NA Intergenic Intergenic 90273 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 146.429-5 chr8 144443459 144443922 + 0.357143 NA intron (NM_013432, intron 3 of 25) intron (NM_013432, intron 3 of 25) 750 NM_013432 4796 Hs.675285 NM_013432 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku like, DNA repair protein protein-coding 135.5-5 chr8 82219291 82220044 + 0.357143 NA Intergenic THE1D|LTR|ERVL-MaLR -377381 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 107.143-11 chr22 19691961 19692505 + 0.357143 NA Intergenic Intergenic -22270 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 104.286-7 chr18 22015318 22015837 + 0.357143 NA Intergenic HAL1|LINE|L1 153391 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 116.357-7 chr8 128450517 128451041 + 0.357143 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 113900 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 106.571-4 chr5 32965696 32966078 + 0.357143 NA Intergenic MLT1F1|LTR|ERVL-MaLR 18444 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 100.786-2 chr1 50184233 50184783 + 0.357143 NA intron (NM_001144774, intron 3 of 6) L3|LINE|CR1 74675 NM_001324213 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 126.357 chr7 2852273 2852874 + 0.357143 NA Intergenic L1M5|LINE|L1 -8265 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 109.857-8 chr8 109697184 109697727 + 0.357143 NA Intergenic Intergenic -5664 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 96.3571-4 chr18 6359039 6359523 + 0.357143 NA promoter-TSS (NR_158611) promoter-TSS (NR_158611) -251 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 143.429-6 chr22 45217201 45217878 + 0.357143 NA intron (NM_001009880, intron 1 of 9) Tigger17a|DNA|TcMar-Tigger -5073 NM_015264 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 108.571-4 chr21 27244856 27245518 + 0.357143 NA Intergenic Intergenic -278099 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 98.8572 chr12 116817650 116818049 + 0.357143 NA intron (NM_001109903, intron 7 of 11) L2a|LINE|L2 63592 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 97.9286 chr1 26601658 26602008 + 0.357143 NA Intergenic AluJr|SINE|Alu 47291 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 100.429-12 chr9 106716863 106717474 + 0.357143 NA Intergenic L1ME4a|LINE|L1 101110 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 133.214-3 chr6 67623750 67624348 + 0.357143 NA Intergenic Intergenic -431302 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 110.429-6 chr2 156786771 156787318 + 0.357143 NA Intergenic L2c|LINE|L2 350665 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 172.857-2 chr17 70775348 70776196 + 0.357143 NA Intergenic Intergenic 426407 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 138.071-2 chr4 95844398 95844928 + 0.357143 NA Intergenic MER77|LTR|ERVL 4570 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 107.786-3 chr2 61862407 61862708 + 0.357143 NA Intergenic L1M4|LINE|L1 -8497 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 119.571-2 chr1 109545817 109546289 + 0.357143 NA TTS (NM_031936) TTS (NM_031936) -2562 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 100.857-9 chr18 5326224 5326507 + 0.357143 NA Intergenic L1PA11|LINE|L1 -29312 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 103.786-5 chr3 194145173 194145643 + 0.357143 NA Intergenic AluSz|SINE|Alu 9260 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 146.643-2 chr22 46250242 46250954 + 0.357143 NA promoter-TSS (NM_207327) promoter-TSS (NM_207327) -305 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 97.9286-7 chr21 28994528 28994802 + 0.357143 NA Intergenic L1ME3G|LINE|L1 -1788 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 113.5-4 chr4 91731547 91732028 + 0.357143 NA Intergenic Intergenic 545515 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 103.214-8 chr18 8859857 8860405 + 0.357143 NA Intergenic Intergenic 142750 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 97.3572-2 chr8 124811262 124811712 + 0.357143 NA Intergenic Intergenic -10498 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 100.143-10 chr5 68311857 68312242 + 0.357143 NA Intergenic Intergenic 19472 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 106.357-3 chr15 34645870 34646381 + 0.357143 NA Intergenic Intergenic 9639 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 103.357-3 chr2 104706894 104707300 + 0.357143 NA Intergenic Intergenic 50622 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 97.2858-3 chr5 29749448 29749855 + 0.357143 NA Intergenic Intergenic -130909 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 120.429-10 chr6 87486289 87486751 + 0.357143 NA intron (NM_001168398, intron 2 of 6) L2b|LINE|L2 13546 NM_006416 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 119.072 chr12 40157982 40158444 + 0.357143 NA intron (NR_146526, intron 1 of 1) intron (NR_146526, intron 1 of 1) 1974 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 130.857-2 chr16 66641908 66642313 + 0.357143 NA intron (NM_181521, intron 1 of 3) intron (NM_181521, intron 1 of 3) 37379 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 118.071-8 chr5 38190619 38191305 + 0.357143 NA Intergenic Intergenic 42482 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 106-2 chr2 23827573 23827921 + 0.357143 NA intron (NR_125717, intron 15 of 28) intron (NR_125717, intron 15 of 28) 99376 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 98.7857 chr10 73954041 73954439 + 0.357143 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -31463 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 119.857-3 chr3 178203855 178204418 + 0.357143 NA Intergenic Intergenic -215065 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 143.286 chr1 100106310 100106964 + 0.357143 NA intron (NM_001304829, intron 11 of 15) AluJb|SINE|Alu 26293 NM_194292 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 107.714-6 chr2 132865547 132866052 + 0.357143 NA intron (NM_207481, intron 10 of 17) intron (NM_207481, intron 10 of 17) -49758 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 223 chr7 17604308 17605089 + 0.357143 NA Intergenic L1PA16|LINE|L1 -45789 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 132.929 chr7 111124759 111125346 + 0.357143 NA 3' UTR (NM_001099660, exon 4 of 4) 3' UTR (NM_001099660, exon 4 of 4) 33925 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 127.857-4 chr16 23196231 23196632 + 0.357143 NA intron (NM_001039, intron 5 of 12) L2a|LINE|L2 13686 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 129.071-2 chr5 10705991 10706420 + 0.357143 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 55029 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 114.786-4 chr22 23019261 23019789 + 0.357143 NA Intergenic AluJb|SINE|Alu -50994 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 104-4 chr19 32382563 32382891 + 0.357143 NA exon (NM_014910, exon 6 of 6) exon (NM_014910, exon 6 of 6) 22812 NR_046201 400684 Hs.438766 NR_046201 ENSG00000267213 LOC400684 - uncharacterized LOC400684 ncRNA 103.214-13 chr6 34400011 34400437 + 0.357143 NA intron (NM_001202470, intron 5 of 8) L1M5|LINE|L1 -7555 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 148-7 chr4 115709753 115710176 + 0.357143 NA Intergenic Intergenic -589761 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 125.571-11 chr7 23172877 23173402 + 0.357143 NA intron (NM_001031710, intron 10 of 10) intron (NM_001031710, intron 10 of 10) -8909 NM_001370443 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 111.643-7 chr5 108205889 108206321 + 0.357143 NA intron (NM_001163315, intron 5 of 8) L1MC5a|LINE|L1 175993 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 118.643-2 chr2 27108524 27108966 + 0.357143 NA intron (NM_006569, intron 1 of 5) L1MEd|LINE|L1 10382 NM_001166240 10669 Hs.159525 NM_006569 ENSG00000138028 CGREF1 CGR11 cell growth regulator with EF-hand domain 1 protein-coding 101.214-7 chr4 157317594 157318109 + 0.357143 NA intron (NM_001083620, intron 5 of 15) AluSq2|SINE|Alu 97123 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 111.214-5 chr20 11417328 11417734 + 0.357143 NA Intergenic L1MC3|LINE|L1 -144148 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 99.7142-6 chrX 88400255 88400610 + 0.357143 NA Intergenic MSTA-int|LTR|ERVL-MaLR -346793 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 130.143-2 chr12 96562902 96563296 + 0.357143 NA intron (NM_001306084, intron 17 of 67) intron (NM_001306084, intron 17 of 67) 73522 NM_001367885 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 109.214-6 chr4 56149399 56149900 + 0.357143 NA Intergenic Intergenic -20546 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 105.5-2 chr2 51013736 51014204 + 0.357143 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 18162 NM_001330078 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 110.357 chr10 46006374 46006888 + 0.357143 NA intron (NM_005437, intron 9 of 9) intron (NM_005437, intron 9 of 9) 12906 NM_001145262 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 118.5-8 chr8 104564675 104565103 + 0.357143 NA intron (NM_013437, intron 1 of 6) AluSz|SINE|Alu 24135 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 105.571-3 chr2 37796855 37797444 + 0.357143 NA Intergenic Intergenic 32562 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 133.857-6 chr5 24548969 24549678 + 0.357143 NA intron (NM_001362460, intron 2 of 9) L1MEg|LINE|L1 95655 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 169.929 chr12 3189610 3190285 + 0.357143 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 112568 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 117.786-3 chr5 62465459 62465788 + 0.357143 NA intron (NM_016338, intron 5 of 29) intron (NM_016338, intron 5 of 29) 46739 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 135.571 chr1 217254144 217254649 + 0.357143 NA Intergenic HAL1ME|LINE|L1 -116694 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 100.286-5 chr12 129779165 129779620 + 0.357143 NA intron (NM_133448, intron 1 of 8) AluJb|SINE|Alu 124633 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 134.357-3 chr9 9479780 9480303 + 0.357143 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -319351 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 105.143-17 chr9 88458129 88458761 + 0.357143 NA intron (NM_006717, intron 3 of 5) intron (NM_006717, intron 3 of 5) 70001 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 117.357-5 chr6 64502684 64503086 + 0.357143 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 696049 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 116.572 chr16 9973026 9973525 + 0.357143 NA intron (NM_001134408, intron 2 of 13) LTR8|LTR|ERV1 208792 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 98-2 chr18 7095520 7095992 + 0.357143 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 22041 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 124.929-2 chr18 29749437 29750088 + 0.357143 NA Intergenic LTR40c|LTR|ERVL -549148 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 101.643-2 chr1 185571288 185571726 + 0.357143 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 56981 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 115.643 chr11 62347610 62348148 + 0.357143 NA intron (NM_025080, intron 2 of 6) AluSx1|SINE|Alu 10431 NM_025080 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 135.286 chr1 53153832 53154355 + 0.357143 NA Intergenic AluJr|SINE|Alu -11455 NM_001287597 6512 Hs.104637 NM_006671 ENSG00000162383 SLC1A7 AAAT|EAAT5 solute carrier family 1 member 7 protein-coding 119.714-3 chr12 48785538 48785968 + 0.357143 NA intron (NM_015270, intron 1 of 21) MIRc|SINE|MIR 3336 NM_015270 112 Hs.525401 NM_015270 ENSG00000174233 ADCY6 AC6|LCCS8 adenylate cyclase 6 protein-coding 98.1429-6 chrX 54091276 54091801 + 0.357143 NA intron (NM_001300788, intron 10 of 13) L2c|LINE|L2 -46402 NM_001184896 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 97.1428 chr10 92719509 92720005 + 0.357143 NA Intergenic Intergenic 29802 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 108.571-6 chr6 40535778 40536340 + 0.357143 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 51305 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 109.929-4 chr22 21983938 21984274 + 0.357143 NA Intergenic AluJr|SINE|Alu -1319 NM_001349847 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 107.643-2 chr11 116294808 116295250 + 0.357143 NA Intergenic ERVL-B4-int|LTR|ERVL -344393 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 125.643 chr4 167478327 167479080 + 0.357143 NA Intergenic Intergenic -244113 NM_001204352 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 105.143-6 chr14 55006295 55006618 + 0.357143 NA intron (NM_007086, intron 7 of 25) L1M5|LINE|L1 20643 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 140.714-7 chr7 109495378 109496070 + 0.357143 NA Intergenic L1ME2|LINE|L1 464489 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 133.786 chr1 241897005 241897415 + 0.357143 NA Intergenic AluSz|SINE|Alu 48479 NM_003686 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 108.429-4 chr7 5405765 5406149 + 0.357143 NA intron (NM_001080495, intron 2 of 29) L1MB3|LINE|L1 17589 NM_001080495 84629 Hs.520638 NM_001013722 ENSG00000182095 TNRC18 CAGL79|TNRC18A trinucleotide repeat containing 18 protein-coding 99.7857 chr1 75881974 75882260 + 0.357143 NA intron (NM_002440, intron 14 of 19) intron (NM_002440, intron 14 of 19) 50287 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 117.5-3 chr11 47691715 47692045 + 0.357143 NA intron (NM_024783, intron 9 of 18).2 intron (NM_024783, intron 9 of 18).2 23489 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 115.286-4 chr17 63071621 63072016 + 0.357143 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 105583 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 109.214-7 chr5 98326846 98327299 + 0.357143 NA Intergenic FLAM_C|SINE|Alu -165833 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 107.714-2 chr12 127323774 127324136 + 0.357143 NA TTS (NR_110057) TTS (NR_110057) 16117 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 138.357 chr11 26438667 26439274 + 0.357143 NA intron (NM_031418, intron 1 of 26) L1MB7|LINE|L1 -34932 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 105-15 chr6 146364197 146364775 + 0.357143 NA intron (NM_001278065, intron 6 of 9) intron (NM_001278065, intron 6 of 9) -179347 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 131.214 chr17 33430359 33430944 + 0.357143 NA intron (NM_001094, intron 1 of 9) MER102c|DNA|hAT-Charlie 103109 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 121.429-6 chr9 84792977 84793485 + 0.357143 NA intron (NM_001369547, intron 13 of 13) intron (NM_001369547, intron 13 of 13) 87330 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 97.7142-5 chr4 17275540 17275855 + 0.357143 NA Intergenic LTR54|LTR|ERV1 45185 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 122.714-2 chr16 13293050 13293543 + 0.357143 NA Intergenic Intergenic 391698 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 108.286-13 chr6 68456693 68457222 + 0.357143 NA Intergenic Intergenic -127058 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 143.286-5 chr8 122897372 122898035 + 0.357143 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 116048 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 107.714-15 chr7 50388397 50388943 + 0.357143 NA intron (NM_001220767, intron 4 of 5) intron (NM_001220767, intron 4 of 5) 61680 NM_001346563 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 104.429-10 chr7 135775876 135776207 + 0.357143 NA Intergenic LTR37B|LTR|ERV1 -27228 NM_001369697 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 97.7857-7 chr8 118649522 118650056 + 0.357143 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -27826 NM_001101676 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 122.286-7 chr6 68115672 68116149 + 0.357143 NA Intergenic Intergenic 60559 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 111.357-9 chr5 106036744 106037196 + 0.357143 NA Intergenic Intergenic 937496 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 129.286-12 chr9 32737637 32738166 + 0.357143 NA Intergenic Intergenic -45639 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 106.428-3 chr9 71874790 71875226 + 0.357143 NA exon (NM_016014, exon 2 of 5) exon (NM_016014, exon 2 of 5) 36237 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 119.143-2 chr10 70029660 70030085 + 0.357143 NA Intergenic L1M8|LINE|L1 -22974 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 116.429-6 chr5 39779561 39780098 + 0.357143 NA Intergenic Intergenic 259398 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 105.214-14 chr7 87861057 87861523 + 0.357143 NA intron (NM_018843, intron 1 of 11) L1MC5a|LINE|L1 15070 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 108.214-6 chr7 3945160 3945622 + 0.357143 NA intron (NM_152744, intron 5 of 44) HAL1ME|LINE|L1 -184294 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 96.9285-2 chr3 63401551 63402095 + 0.357143 NA intron (NM_001130003, intron 2 of 5) MER117|DNA|hAT-Charlie -41489 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 112.429-7 chr22 50364229 50364721 + 0.357143 NA intron (NM_001242899, intron 1 of 22) intron (NM_001242899, intron 1 of 22) 21148 NM_001351642 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 100.357-4 chr6 8871208 8871828 + 0.357143 NA Intergenic Intergenic 219309 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 109.5-5 chr19 40710988 40711523 + 0.357143 NA intron (NM_024876, intron 4 of 14) AluJo|SINE|Alu 3864 NM_001142555 79934 Hs.130712 NM_024876 ENSG00000123815 COQ8B ADCK4|NPHS9 coenzyme Q8B protein-coding 112.929-9 chr7 112986674 112987292 + 0.357143 NA intron (NR_110162, intron 1 of 5) L1MB2|LINE|L1 8660 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 139.357-2 chr4 158443970 158444600 + 0.357143 NA Intergenic MIR|SINE|MIR -77429 NM_001363776 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 115.429-2 chr1 212889118 212889478 + 0.357143 NA intron (NM_014053, intron 8 of 9) intron (NM_014053, intron 8 of 9) 31023 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 124.357-8 chr5 2100706 2101305 + 0.357143 NA Intergenic L1MB4|LINE|L1 211196 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 100.286-2 chr11 7372061 7372530 + 0.357143 NA intron (NM_175733, intron 3 of 6) L1ME2|LINE|L1 93540 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 115.714-9 chr17 82245121 82245489 + 0.357143 NA intron (NM_001893, intron 8 of 8) CpG 8637 NR_106845 102465472 NR_106845 ENSG00000284574 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 102.286-14 chr9 121673731 121674230 + 0.357143 NA intron (NM_032552, intron 1 of 16) LTR33|LTR|ERVL -68805 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 102.071 chr1 98774306 98774680 + 0.357143 NA Intergenic ERVL-B4-int|LTR|ERVL 112772 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 121.571 chr2 121442941 121443308 + 0.357143 NA intron (NM_015282, intron 19 of 38) intron (NM_015282, intron 19 of 38) -87756 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 102.857-4 chr2 147390801 147391315 + 0.357143 NA Intergenic Intergenic -453459 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 98.8571-2 chr22 26749712 26750310 + 0.357143 NA intron (NR_110543, intron 2 of 5) L1PB1|LINE|L1 77168 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 111-8 chr4 171223923 171224340 + 0.357143 NA Intergenic Intergenic 37947 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 107.714-11 chr3 76573565 76574144 + 0.357143 NA Intergenic L2c|LINE|L2 -466245 NM_001290065 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 122.786-3 chr17 63114534 63115200 + 0.357143 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 148632 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 125.214 chr14 35882867 35883393 + 0.357143 NA Intergenic Intergenic 56792 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 102.357-6 chr8 120201226 120201635 + 0.357143 NA intron (NM_021110, intron 8 of 47) MER63A|DNA|hAT-Blackjack 76328 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 115.714-3 chr11 10275738 10276338 + 0.357143 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 18169 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 119.429-6 chr8 140453537 140454043 + 0.357143 NA intron (NM_031466, intron 1 of 22) MamRep1151|LTR?|LTR? 3954 NM_001160372 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 109.429-2 chr2 29315337 29315779 + 0.357143 NA intron (NM_004304, intron 8 of 28) MER5A|DNA|hAT-Charlie -91658 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 114.429-6 chr19 29447613 29448176 + 0.357143 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 77858 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 117-8 chr4 39235002 39235743 + 0.357143 NA intron (NM_025132, intron 20 of 36) AluJr|SINE|Alu 52843 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 103.786-7 chr6 37694783 37695365 + 0.357143 NA intron (NM_153487, intron 1 of 16) intron (NM_153487, intron 1 of 16) 2809 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 104.929-4 chr14 60637699 60638242 + 0.357143 NA Intergenic Intergenic -1246 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 97.4999-3 chr7 35425081 35425575 + 0.357143 NA Intergenic Intergenic 111473 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 106.071-10 chrX 63349884 63350258 + 0.357143 NA exon (NM_001012968, exon 1 of 1) exon (NM_001012968, exon 1 of 1) 1261 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 103.929-7 chr14 39726892 39727298 + 0.357143 NA Intergenic Intergenic -294595 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 110.214-2 chr14 73823410 73823844 + 0.357143 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 6508 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 97.8571-2 chr11 106916718 106917194 + 0.357143 NA intron (NM_001256424, intron 4 of 8) L2a|LINE|L2 101520 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 117.786 chr11 41392250 41392653 + 0.357143 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 67185 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 143.857-3 chr5 141759274 141759976 + 0.357143 NA Intergenic MIRb|SINE|MIR -77395 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 156-2 chr4 49150439 49151119 + 0.357143 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 164137 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 109.714 chr1 208152042 208152568 + 0.357143 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 92079 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 103 chr1 167949908 167950247 + 0.357143 NA intron (NM_001349780, intron 1 of 17) intron (NM_001349780, intron 1 of 17) -13005 NM_001143674 25874 Hs.517768 NM_015415 ENSG00000143158 MPC2 BRP44|SLC54A2 mitochondrial pyruvate carrier 2 protein-coding 100.214-7 chr8 58470857 58471342 + 0.357143 NA Intergenic Intergenic 29064 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 120.786-4 chr7 11877564 11878183 + 0.357143 NA Intergenic Intergenic -45675 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 149.429-3 chr5 109587345 109587901 + 0.357143 NA Intergenic MER34|LTR|ERV1 -101743 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 125.143 chr1 85226071 85226669 + 0.357143 NA Intergenic Intergenic -25354 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 177.143 chr17_KI270858v1_alt 23309 24147 + 0.357143 NA NA Intergenic NA NA 113.143-9 chr3 57897640 57898002 + 0.357143 NA intron (NM_001304423, intron 3 of 7) intron (NM_001304423, intron 3 of 7) 7819 NM_001304423 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 109.929-3 chr2 21117383 21117735 + 0.357143 NA Intergenic AluJo|SINE|Alu -6427 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 118.929-7 chr6 140529000 140529535 + 0.357143 NA Intergenic Intergenic -154547 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 98 chr12 62372249 62372667 + 0.357143 NA intron (NR_147080, intron 6 of 19) intron (NR_147080, intron 6 of 19) -94368 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 113.286-11 chr8 139058472 139059287 + 0.357143 NA Intergenic AluY|SINE|Alu -144838 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 97.2858 chr11 13111261 13111696 + 0.357143 NA Intergenic Intergenic 102162 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 117-3 chr14 77996878 77997467 + 0.357143 NA Intergenic L1ME1|LINE|L1 -173201 NM_001366426 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 115.214-2 chr19 8665555 8665908 + 0.357143 NA Intergenic L1M5|LINE|L1 33064 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 119.357-3 chr17 77983663 77984352 + 0.357143 NA Intergenic ERVL-E-int|LTR|ERVL -20230 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 114.643-5 chr22 40214461 40214974 + 0.357143 NA intron (NM_015088, intron 1 of 20) AluJr4|SINE|Alu 36792 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 120.071-4 chr8 82461208 82461789 + 0.357143 NA Intergenic Intergenic -450606 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 105-12 chr5 61866368 61866695 + 0.357143 NA Intergenic Intergenic -130833 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 101.357-3 chr16 59462972 59463360 + 0.357143 NA Intergenic L1MEd|LINE|L1 292025 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 119 chr12 12258927 12259376 + 0.357143 NA intron (NM_002336, intron 1 of 22).2 AluSx1|SINE|Alu 7893 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 160.286 chr1 111733654 111734157 + 0.357143 NA intron (NM_198926, intron 1 of 1) intron (NM_198926, intron 1 of 1) 5490 NM_019099 55924 Hs.193406 NM_019099 ENSG00000197852 INKA2 C1orf183|FAM212B inka box actin regulator 2 protein-coding 125.286 chr1 167724649 167725144 + 0.357143 NA intron (NM_024569, intron 1 of 4) L2|LINE|L2 2914 NM_024569 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 113.286-4 chr10 75747939 75748276 + 0.357143 NA intron (NR_131178, intron 1 of 7) AluSq|SINE|Alu -34654 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 106.429-2 chr11 124454029 124454511 + 0.357143 NA Intergenic Intergenic -13185 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 136.571-2 chr3 58502522 58503054 + 0.357143 NA TTS (NM_001128214) TTS (NM_001128214) 4423 NM_153331 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 119.714-7 chr2 172707329 172707772 + 0.357143 NA Intergenic L1MDa|LINE|L1 -28295 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 106.786-2 chr17 62148296 62148665 + 0.357143 NA Intergenic Intergenic -83202 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 110.071-5 chr8 133165065 133165617 + 0.357143 NA Intergenic Intergenic -25698 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 108.143-2 chr11 40960263 40960714 + 0.357143 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 499148 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 120.571-7 chr8 114733323 114733880 + 0.357143 NA Intergenic Intergenic 934412 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 128.929-4 chr2 175164846 175165364 + 0.357143 NA intron (NR_045773, intron 1 of 13) AluSx1|SINE|Alu 2604 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 112.786-4 chr15 79382859 79383295 + 0.357143 NA 3' UTR (NM_001301203, exon 3 of 3) 3' UTR (NM_001301203, exon 3 of 3) -49439 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 145.143-4 chr7 35242778 35243370 + 0.357143 NA intron (NM_001166220, intron 4 of 5) AluJo|SINE|Alu 11026 NM_001166220 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 122.286-5 chr4 88938814 88939221 + 0.357143 NA intron (NM_014883, intron 4 of 23) L1M5|LINE|L1 -115656 NM_001015045 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 101.5 chr11 14656535 14656937 + 0.357143 NA intron (NM_000922, intron 1 of 15) MIR|SINE|MIR 12932 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 123.071-5 chr9 123478060 123478705 + 0.357143 NA intron (NM_001352968, intron 12 of 18) intron (NM_001352968, intron 12 of 18) 7240 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 152.357-4 chr9 94843570 94844023 + 0.357143 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 33834 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 127.929-5 chr4 88599538 88599967 + 0.357143 NA intron (NM_001271602, intron 2 of 24) MamRep605|LTR?|LTR? 7272 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 159.857-2 chr13 86201822 86202713 + 0.357143 NA Intergenic Intergenic -402848 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 112.643-5 chr3 53462472 53462940 + 0.357143 NA Intergenic MLT1G|LTR|ERVL-MaLR -31905 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 120.929-2 chr2 177766236 177766660 + 0.357143 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 93126 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 120.429-4 chr16 82178354 82178753 + 0.357143 NA Intergenic Intergenic -8329 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 133.357 chr12 8104101 8104667 + 0.357143 NA Intergenic Intergenic -19248 NM_194448 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 115.214 chr16 84626199 84626781 + 0.357143 NA Intergenic AluSx|SINE|Alu -8412 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 101.572 chr8 85940896 85941285 + 0.357143 NA Intergenic L1MA5|LINE|L1 -113148 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 103.071-6 chr18 76028487 76029078 + 0.357143 NA Intergenic L3|LINE|CR1 -94216 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 119.071 chr1 9248795 9249383 + 0.357143 NA intron (NM_001282587, intron 3 of 4) intron (NM_001282587, intron 3 of 4) 9242 NM_001282587 9563 Hs.463511 NM_004285 ENSG00000049239 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding 103.214-5 chr11 98882244 98882714 + 0.357143 NA Intergenic L1PA16|LINE|L1 -138470 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 99.1428-9 chr9 28509280 28509712 + 0.357143 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 209809 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 138.286 chr5 108985485 108986065 + 0.357143 NA intron (NR_146155, intron 13 of 19) L1PB1|LINE|L1 61169 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 98.6429-2 chr2 30575749 30576350 + 0.357143 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 128803 NM_182551 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 116.5 chr22 36986817 36987239 + 0.357143 NA Intergenic Intergenic 20823 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 106.143 chr11 84330534 84331032 + 0.357143 NA intron (NM_001142699, intron 7 of 27) MIRc|SINE|MIR -13444 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 96.7143-4 chr6 140816810 140817103 + 0.357143 NA Intergenic Eulor5B|DNA?|DNA? 133142 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 98.143-2 chr7 22951933 22952362 + 0.357143 NA intron (NM_001363467, intron 10 of 11) L2a|LINE|L2 61983 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 134.929 chr2 51238065 51238463 + 0.357143 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 205663 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 113.857-7 chr4 34407640 34407996 + 0.357143 NA Intergenic Intergenic -138071 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 164.214 chr2 40231336 40231927 + 0.357143 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 198673 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 101-8 chr4 69125360 69125690 + 0.357143 NA Intergenic Intergenic 29051 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 99.7143 chr1 237880643 237880975 + 0.357143 NA intron (NR_027247, intron 3 of 11) intron (NR_027247, intron 3 of 11) 10113 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 113.143-7 chr2 98965781 98966134 + 0.357143 NA Intergenic L1PREC2|LINE|L1 -29732 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 107.643-8 chr8 136597800 136598158 + 0.357143 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 67181 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 104.643-3 chr22 22212593 22212970 + 0.357143 NA Intergenic Intergenic -32005 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 170.072 chr8 131113268 131114017 + 0.357143 NA Intergenic L1MA1|LINE|L1 -72733 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 104.143-9 chr4 43566738 43567154 + 0.357143 NA Intergenic AluSx|SINE|Alu -74403 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 105-5 chr11 8102269 8102922 + 0.357143 NA 3' UTR (NM_003320, exon 13 of 13) 3' UTR (NM_003320, exon 13 of 13) 21233 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 105.5-4 chr4 87018893 87019260 + 0.357143 NA intron (NM_001313960, intron 1 of 17) intron (NM_001313960, intron 1 of 17) 12075 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 122.857-3 chr11 70603039 70603445 + 0.357143 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -27852 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 116.929-2 chr2 71808700 71809063 + 0.357143 NA Intergenic Intergenic 338981 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 103.857-4 chr17 57496237 57496692 + 0.357143 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 27133 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 131.857-7 chr6 134489815 134490264 + 0.357143 NA intron (NR_038219, intron 4 of 4) L1ME2|LINE|L1 -11142 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 134.214-3 chr2 43345236 43346010 + 0.357143 NA intron (NM_001083953, intron 29 of 37) intron (NM_001083953, intron 29 of 37) 118412 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 128.429-3 chr22 41946958 41947359 + 0.357143 NA promoter-TSS (NM_001304371) promoter-TSS (NM_001304371) -6 NM_001304371 79019 Hs.208912 NM_024053 ENSG00000100162 CENPM C22orf18|CENP-M|PANE1 centromere protein M protein-coding 135.786-3 chr2 160024682 160025183 + 0.357143 NA intron (NM_001007267, intron 6 of 26) L1M2a|LINE|L1 37683 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 118.5-4 chr16 24794316 24794846 + 0.357143 NA exon (NM_001351850, exon 8 of 24) exon (NM_001351850, exon 8 of 24) -51282 NM_001258411 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 104.429-4 chr4 55867742 55868147 + 0.357143 NA intron (NM_001024924, intron 4 of 18) intron (NM_001024924, intron 4 of 18) 14294 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 130-6 chr8 115743122 115743818 + 0.357143 NA Intergenic Intergenic -74495 NM_014112 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 101.643-8 chr4 130509569 130509995 + 0.357143 NA Intergenic MER92-int|LTR|ERV1 133421 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 129.143-5 chr22 30227365 30227842 + 0.285714 NA Intergenic Intergenic -11591 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 155.5 chr16 77119210 77120184 + 0.285714 NA Intergenic Intergenic -71493 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 118.143-5 chr2 179657933 179658540 + 0.285714 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 1958 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 100.714-7 chr16 50201861 50202298 + 0.285714 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 48598 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 109-7 chr3 94356482 94357018 + 0.285714 NA Intergenic Intergenic 293689 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 111.714-11 chr9 8478023 8478803 + 0.285714 NA intron (NM_130392, intron 14 of 30) intron (NM_130392, intron 14 of 30) 255533 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 118-2 chr18 2548346 2548833 + 0.285714 NA intron (NM_022840, intron 5 of 8) L2|LINE|L2 22916 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 109.214 chr1 202941214 202941821 + 0.285714 NA 3' UTR (NM_001290629, exon 9 of 9) 3' UTR (NM_001290629, exon 9 of 9) -12918 NM_001303051 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 97.5713 chr1 68616478 68617097 + 0.285714 NA Intergenic Intergenic -119705 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 96.9287-2 chr4 141061822 141062293 + 0.285714 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 71412 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 97.7142-4 chr3 102996213 102996629 + 0.285714 NA Intergenic L1MA1|LINE|L1 527695 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 98.7858-4 chr3 12570489 12571124 + 0.285714 NA intron (NM_001271707, intron 2 of 6) AluSx1|SINE|Alu 13719 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 108.786 chr10 99972602 99973032 + 0.285714 NA intron (NM_015221, intron 1 of 16) AluSz6|SINE|Alu 37130 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 106-6 chr21 15865285 15865852 + 0.285714 NA intron (NM_001283042, intron 20 of 24) intron (NM_001283042, intron 20 of 24) 135586 NM_001352560 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 101-6 chr18 52731301 52731710 + 0.285714 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 391308 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 101.571-9 chr20 43653745 43654395 + 0.285714 NA Intergenic Intergenic -12949 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 105.572-2 chr22 41673091 41673798 + 0.285714 NA TTS (NM_005008) TTS (NM_005008) 15423 NM_001003796 4809 Hs.182255 NM_005008 ENSG00000100138 SNU13 15.5K|FA-1|FA1|NHP2L1|NHPX|OTK27|SNRNP15-5|SPAG12|SSFA1 small nuclear ribonucleoprotein 13 protein-coding 103.643-4 chr3 145383382 145383817 + 0.285714 NA Intergenic Intergenic 685586 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 103.071-3 chr15 26311590 26312009 + 0.285714 NA Intergenic Intergenic 195986 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 97.5713-2 chr1 202840590 202841091 + 0.285714 NA Intergenic AluJb|SINE|Alu 20583 NR_038135 641515 Hs.23459 NR_038135 ENSG00000184774 MGAT4EP - MGAT4 family member E, pseudogene pseudo 99.6429 chr11 71500903 71501454 + 0.285714 NA intron (NM_018161, intron 20 of 20) intron (NM_018161, intron 20 of 20) -26089 NM_001012503 440050 Hs.710675 NM_001012503 ENSG00000244411 KRTAP5-7 KRTAP5-3|KRTAP5.7 keratin associated protein 5-7 protein-coding 107.286-6 chr3 182919190 182919621 + 0.285714 NA 3' UTR (NM_014616, exon 30 of 30) 3' UTR (NM_014616, exon 30 of 30) 61133 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 108.071-2 chr15 66617252 66617667 + 0.285714 NA intron (NR_110372, intron 1 of 4) intron (NR_110372, intron 1 of 4) 35269 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 97.8571-6 chr5 98818831 98819304 + 0.285714 NA Intergenic L1PB1|LINE|L1 45404 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 111.857-6 chr16 81585037 81585624 + 0.285714 NA intron (NM_030629, intron 1 of 20) AluSx1|SINE|Alu -26018 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 103.714 chr1 43370995 43371462 + 0.285714 NA Intergenic Intergenic -3154 NM_001256401 64834 Hs.25597 NM_022821 ENSG00000066322 ELOVL1 CGI-88|Ssc1 ELOVL fatty acid elongase 1 protein-coding 103.143-2 chr10 74826127 74826843 + 0.285714 NA promoter-TSS (NM_012330) promoter-TSS (NM_012330) 72 NM_001256468 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 105.786-3 chr15 56167472 56167944 + 0.285714 NA intron (NM_001368073, intron 2 of 8) intron (NM_001368073, intron 2 of 8) 22224 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 112.786-3 chr14 83272169 83272746 + 0.285714 NA Intergenic Intergenic 629825 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 97.1428-7 chr8 89013061 89013460 + 0.285714 NA Intergenic Intergenic -685777 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 98.9999-4 chr5 126594838 126595233 + 0.285714 NA exon (NM_001182, exon 1 of 18) exon (NM_001182, exon 1 of 18) 184 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 105.928 chr4 147524335 147524787 + 0.285714 NA intron (NR_045958, intron 3 of 6) intron (NR_045958, intron 3 of 6) 43464 NR_045958 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 107.072 chr1 163658650 163659136 + 0.285714 NA Intergenic Intergenic -235702 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 116.572-2 chr6 71519422 71520033 + 0.285714 NA Intergenic Intergenic 98700 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 114.571-12 chr8 137673599 137674256 + 0.285714 NA Intergenic L1MD1|LINE|L1 -260339 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 106.071 chr1 41793085 41793600 + 0.285714 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 125580 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 103.714-16 chr4 71883956 71884657 + 0.285714 NA Intergenic L1MEd|LINE|L1 -78786 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 98.857 chr3 101447495 101448058 + 0.285714 NA intron (NM_020654, intron 4 of 23) L1MB8|LINE|L1 65436 NM_001282801 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 114-10 chrX 84293138 84293904 + 0.285714 NA Intergenic MER2|DNA|TcMar-Tigger -67693 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 102.857-6 chr4 2305766 2306298 + 0.285714 NA intron (NM_020972, intron 7 of 12) L2c|LINE|L2 -43923 NM_006454 10608 Hs.655020 NM_006454 ENSG00000123933 MXD4 MAD4|MST149|MSTP149|bHLHc12 MAX dimerization protein 4 protein-coding 101.714-5 chr2 63401274 63401931 + 0.285714 NA intron (NR_148704, intron 11 of 18) AluSz|SINE|Alu 36405 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 100.286-3 chr11 42282921 42283351 + 0.285714 NA Intergenic L1MA9|LINE|L1 -29446 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 96.3571 chr10 118112213 118112751 + 0.285714 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -65541 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 108.286-12 chr5 16146589 16147087 + 0.285714 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 32953 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 96.857 chr17 75979160 75979505 + 0.285714 NA promoter-TSS (NM_007292) promoter-TSS (NM_007292) 92 NM_001113324 100134934 Hs.593566 NM_001113324 ENSG00000257949 TEN1 C17orf106 TEN1 subunit of CST complex protein-coding 99.1428-10 chrX 17592894 17593344 + 0.285714 NA intron (NM_198270, intron 1 of 7) MIRb|SINE|MIR -33992 NR_046632 100873920 Hs.584577 NR_046632 NHS-AS1 - NHS antisense RNA 1 ncRNA 100.429-5 chr18 55637385 55638075 + 0.285714 NA Intergenic L1MEh|LINE|L1 -1773 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 143.214-2 chr1 223388695 223389697 + 0.285714 NA Intergenic Intergenic -4219 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 127.571-2 chr12 9024231 9025018 + 0.285714 NA Intergenic Intergenic 34999 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 111.428-3 chr2 182949790 182950471 + 0.285714 NA intron (NM_013436, intron 23 of 30) L2a|LINE|L2 -83493 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 101.571-4 chr12 116935924 116936420 + 0.285714 NA intron (NM_153348, intron 2 of 10) L2a|LINE|L2 25216 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 101.857-5 chr18 11101866 11102277 + 0.285714 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 46691 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 119-2 chr12 93596920 93597700 + 0.285714 NA Intergenic L1MD2|LINE|L1 24635 NM_001270471 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 108.286-3 chr1 38874584 38875159 + 0.285714 NA non-coding (NR_037633, exon 2 of 6) non-coding (NR_037633, exon 2 of 6) 1470 NR_135048 105378663 Hs.585419 NR_135048 ENSG00000228436 LOC105378663 - uncharacterized LOC105378663 ncRNA 102.428-3 chr7 84912108 84912714 + 0.285714 NA Intergenic Intergenic 209520 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 118-4 chr2 201066602 201067124 + 0.285714 NA intron (NM_001321626, intron 1 of 12) intron (NM_001321626, intron 1 of 12) 4808 NM_001321624 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 102.286-6 chr3 102108353 102108763 + 0.285714 NA Intergenic Tigger1|DNA|TcMar-Tigger -55147 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 98.0715-2 chr3 60439983 60440650 + 0.285714 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 177554 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 114.571-11 chr6 98765449 98766145 + 0.285714 NA Intergenic Intergenic 65903 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 96.3571-3 chr15 92901399 92901908 + 0.285714 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 1329 NM_001042572 1106 Hs.220864 NM_001271 ENSG00000173575 CHD2 EEOC chromodomain helicase DNA binding protein 2 protein-coding 119.929 chr10 58943027 58943936 + 0.285714 NA Intergenic Intergenic -56037 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 99.2143-5 chr6 27132390 27132946 + 0.285714 NA promoter-TSS (NM_021064) promoter-TSS (NM_021064) 128 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 105.857-7 chr18 78486864 78487438 + 0.285714 NA Intergenic Intergenic -493124 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 104.571-17 chr7 80707333 80707869 + 0.285714 NA Intergenic Intergenic 60948 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 126.143-2 chr13 34272807 34273550 + 0.285714 NA Intergenic L2|LINE|L2 -74865 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 108.357-8 chr6 72489250 72489719 + 0.285714 NA Intergenic Intergenic 122738 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 103.429-5 chr12 87035053 87035525 + 0.285714 NA Intergenic Intergenic -196289 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 100.429-3 chr17 69999475 69999869 + 0.285714 NA Intergenic Intergenic 37965 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 100.214-5 chr4 169604475 169604866 + 0.285714 NA intron (NM_001199400, intron 1 of 32) MamRep605|LTR?|LTR? 7913 NM_001199400 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 100.286-11 chr5 111683099 111683630 + 0.285714 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 72887 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 103.714-8 chr16 78278913 78279490 + 0.285714 NA TTS (NR_120436) TTS (NR_120436) 179547 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 103.929-2 chr10 25929750 25930211 + 0.285714 NA intron (NR_120650, intron 2 of 3) intron (NR_120650, intron 2 of 3) 3730 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 112.643-3 chr14 47018656 47019215 + 0.285714 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 324311 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 96.8573 chr10 116027139 116027667 + 0.285714 NA Intergenic MLT2D|LTR|ERVL 167386 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 112.143-6 chr14 84551380 84552123 + 0.285714 NA Intergenic Intergenic -720181 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 100.214-8 chr8 124955839 124956504 + 0.285714 NA Intergenic Intergenic 14163 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 97.857-2 chr10 64891757 64892308 + 0.285714 NA Intergenic HERVL-int|LTR|ERVL 32486 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 102.071-10 chr8 81477001 81477506 + 0.285714 NA Intergenic L2|LINE|L2 5980 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 105.786 chr1 86787826 86788336 + 0.285714 NA Intergenic L1MB2|LINE|L1 83505 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 102.286-3 chr16 10570372 10570820 + 0.285714 NA intron (NM_001424, intron 1 of 4) AluSz|SINE|Alu 10002 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 98.143 chr10 41888782 41889296 + 0.285714 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 479006 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 98.1428-2 chr3 167379730 167380350 + 0.285714 NA intron (NM_001199201, intron 1 of 21) intron (NM_001199201, intron 1 of 21) 243 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 126.786-10 chr9 34694826 34695622 + 0.285714 NA Intergenic MER21B|LTR|ERVL -3948 NM_006274 6363 Hs.50002 NM_006274 ENSG00000172724 CCL19 CKb11|ELC|MIP-3b|MIP3B|SCYA19 C-C motif chemokine ligand 19 protein-coding 118.286-4 chr22 27668732 27669535 + 0.285714 NA Intergenic MIR|SINE|MIR 132623 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 98.9999 chr13 55686632 55687249 + 0.285714 NA Intergenic Intergenic 512486 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 101.357-5 chr2 41521178 41521647 + 0.285714 NA Intergenic MIR|SINE|MIR -356143 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 97.1428-5 chr20 56389361 56389790 + 0.285714 NA intron (NM_001323304, intron 1 of 9) L2a|LINE|L2 2640 NM_003600 6790 Hs.250822 NM_003600 ENSG00000087586 AURKA AIK|ARK1|AURA|BTAK|PPP1R47|STK15|STK6|STK7 aurora kinase A protein-coding 123.786-2 chr5 113170712 113171403 + 0.285714 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 123881 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 97.0001 chr11 37680812 37681237 + 0.285714 NA Intergenic LTR1D1|LTR|ERV1 -257577 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 98.9999-5 chr6 76545826 76546423 + 0.285714 NA intron (NR_149101, intron 2 of 2) L1MC2|LINE|L1 47499 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 116.857-5 chr2 9956120 9956667 + 0.285714 NA intron (NM_198182, intron 2 of 15) AluJr|SINE|Alu 4700 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 102.786-3 chr12 9659572 9659950 + 0.285714 NA Intergenic MER101-int|LTR|ERV1 -9952 NM_001004419 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 99.7142 chr1 27417522 27417997 + 0.285714 NA intron (NM_006990, intron 4 of 8) intron (NM_006990, intron 4 of 8) 25137 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 111.429-7 chr4 172148129 172148585 + 0.285714 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -334750 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 103.357-4 chr4 30739617 30740358 + 0.285714 NA intron (NM_032457, intron 1 of 2) MIR|SINE|MIR 19618 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 101.571-3 chr12 77831242 77831858 + 0.285714 NA exon (NM_014903, exon 1 of 39) exon (NM_014903, exon 1 of 39) 656 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 107.714-7 chr2 138652209 138652740 + 0.285714 NA Intergenic Intergenic 127916 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 101.357-2 chr14 73754953 73755689 + 0.285714 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -3426 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 101.428-6 chr7 111483861 111484399 + 0.285714 NA intron (NM_001350964, intron 4 of 4) intron (NM_001350964, intron 4 of 4) 78161 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 139.072 chr8 87088258 87089190 + 0.285714 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 222309 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 98.1428-7 chr9 127821377 127821720 + 0.285714 NA intron (NR_136302, intron 5 of 5) AluSx|SINE|Alu 5482 NR_136302 102723566 NR_136302 ENSG00000225032 LOC102723566 - uncharacterized LOC102723566 ncRNA 120-4 chr19 3769920 3770710 + 0.285714 NA 3' UTR (NM_032753, exon 3 of 3) 3' UTR (NM_032753, exon 3 of 3) 1913 NM_001319074 84839 Hs.532691 NM_032753 ENSG00000173976 RAX2 ARMD6|CORD11|QRX|RAXL1 retina and anterior neural fold homeobox 2 protein-coding 113.143-3 chr13 96117408 96117954 + 0.285714 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 26842 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 104.714-8 chr6 35089239 35089923 + 0.285714 NA 3' UTR (NM_015245, exon 24 of 24) 3' UTR (NM_015245, exon 24 of 24) 51758 NM_001366329 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 103.5-4 chr12 8707482 8708024 + 0.285714 NA intron (NM_001352271, intron 2 of 6) MER21B|LTR|ERVL 9762 NR_147946 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 126.929-5 chr4 134858047 134858789 + 0.285714 NA Intergenic Intergenic 265141 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 101.786-9 chr9 30080410 30081070 + 0.285714 NA Intergenic AluJr|SINE|Alu 327714 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 110.572 chr20 52004384 52004887 + 0.285714 NA Intergenic Intergenic 100849 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 113.857-8 chr5 45672773 45673504 + 0.285714 NA intron (NM_021072, intron 1 of 7) L1MC3|LINE|L1 23242 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 102.357-4 chr3 32016243 32016639 + 0.285714 NA Intergenic L1PA4|LINE|L1 -34591 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 101.286-4 chr16 77633738 77634393 + 0.285714 NA Intergenic Intergenic -88427 NM_001243661 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 112.428-3 chr9 21351931 21352632 + 0.285714 NA Intergenic Intergenic -1394 NM_021002 3443 Hs.533470 NM_021002 ENSG00000120235 IFNA6 IFN-alphaK interferon alpha 6 protein-coding 130-2 chr13 39497253 39498002 + 0.285714 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 105566 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 103.5-11 chr5 91470316 91470802 + 0.285714 NA Intergenic Intergenic -87242 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 111.714-5 chr13 97573260 97573902 + 0.285714 NA Intergenic Intergenic 139412 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 106.571-5 chr7 765894 766285 + 0.285714 NA intron (NR_075098, intron 8 of 12) AluJo|SINE|Alu -38413 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 99.7858 chr12 51389715 51390131 + 0.285714 NA intron (NM_007210, intron 2 of 11) intron (NM_007210, intron 2 of 11) -1394 NM_001267615 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 100.5 chr1 176974999 176975436 + 0.285714 NA intron (NM_207108, intron 8 of 21) MIRb|SINE|MIR 54228 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 101.428 chr14 67120170 67120687 + 0.285714 NA intron (NM_001024218, intron 15 of 21) intron (NM_001024218, intron 15 of 21) -69012 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 112.714-4 chr16 75510977 75511587 + 0.285714 NA Intergenic MLT1D|LTR|ERVL-MaLR -15841 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 108.143-12 chr7 27934578 27935069 + 0.285714 NA intron (NM_175061, intron 2 of 4) L1MB7|LINE|L1 194728 NM_001079864 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 112.214-3 chr2 139370816 139371549 + 0.285714 NA Intergenic Intergenic 473858 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 99.1428-5 chr5 36530959 36531570 + 0.285714 NA Intergenic Intergenic -75091 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 102.643 chr1 206694352 206694758 + 0.285714 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) 9650 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 111.571-5 chr4 56551819 56552500 + 0.285714 NA intron (NM_001256475, intron 2 of 8) intron (NM_001256475, intron 2 of 8) 21553 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 119.286-2 chr12 125670375 125671167 + 0.285714 NA Intergenic L1ME2|LINE|L1 48319 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 100.714-15 chr6 48309128 48309812 + 0.285714 NA Intergenic Intergenic -240781 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 117.857-9 chr18 78180554 78181181 + 0.285714 NA Intergenic Intergenic -187140 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 132.286 chr2 32283143 32283819 + 0.285714 NA intron (NM_032312, intron 1 of 5) intron (NM_032312, intron 1 of 5) 5577 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 131 chr1 188058254 188058857 + 0.285714 NA Intergenic Intergenic 614927 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 129.643-6 chr5 60329132 60329585 + 0.285714 NA intron (NM_001364599, intron 1 of 16) THE1C|LTR|ERVL-MaLR 43305 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 117.428 chr11 81466917 81467486 + 0.285714 NA Intergenic MLT1J|LTR|ERVL-MaLR 423635 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 99.6428-4 chr3 112317572 112318074 + 0.285714 NA intron (NR_147411, intron 1 of 4) AluYk2|SINE|Alu -14750 NM_001365853 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 96.3571-6 chr8 131670936 131671366 + 0.285714 NA Intergenic L1ME3A|LINE|L1 -232942 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 106.929-2 chr13 22647025 22647827 + 0.285714 NA Intergenic Intergenic 250755 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 106.143-14 chr8 123176500 123177017 + 0.285714 NA Intergenic L1MC4|LINE|L1 -2289 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 141.429 chr17 58173203 58174033 + 0.285714 NA Intergenic L1M4|LINE|L1 3962 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 108-16 chr7 73455518 73456255 + 0.285714 NA intron (NM_001370402, intron 13 of 18) intron (NM_001370402, intron 13 of 18) 22108 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 103.143-9 chr18 5280606 5281291 + 0.285714 NA Intergenic Intergenic 14778 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 108.5-4 chr6 62681638 62682158 + 0.285714 NA Intergenic Intergenic -395671 NR_146870 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 101.357-7 chr2 105311941 105312438 + 0.285714 NA intron (NR_137328, intron 1 of 12) intron (NR_137328, intron 1 of 12) 17467 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 127.357-4 chr20 23279401 23280093 + 0.285714 NA Intergenic Intergenic -71044 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 125.071-3 chr10 63119579 63120148 + 0.285714 NA Intergenic Intergenic -13384 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 111-4 chr2 140322490 140322961 + 0.285714 NA intron (NM_018557, intron 81 of 90) intron (NM_018557, intron 81 of 90) 263960 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 98.2857-4 chr5 29692030 29692404 + 0.285714 NA Intergenic Intergenic -188343 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 126-6 chr16 25252544 25253376 + 0.285714 NA exon (NM_001012981, exon 3 of 7) exon (NM_001012981, exon 3 of 7) 4885 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 107.143-14 chr3 95247912 95248386 + 0.285714 NA Intergenic L1MB8|LINE|L1 309886 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 102.143-3 chr1 114985129 114985583 + 0.285714 NA intron (NM_001282542, intron 29 of 30) intron (NM_001282542, intron 29 of 30) -44468 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 108.714 chr1 206883214 206883957 + 0.285714 NA Intergenic Intergenic -13858 NM_001185158 11009 Hs.58831 NM_006850 ENSG00000162892 IL24 C49A|FISP|IL10B|MDA7|MOB5|ST16 interleukin 24 protein-coding 123.286-7 chr2 183669575 183670447 + 0.285714 NA Intergenic Intergenic 545568 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 112.857-10 chr6 37209959 37210651 + 0.285714 NA Intergenic Intergenic 40153 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 113.643-3 chr2 143355651 143356452 + 0.285714 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 226632 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 133.643-5 chr20 57851199 57852242 + 0.285714 NA Intergenic Intergenic -140184 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 106.357-4 chr16 86550880 86551349 + 0.285714 NA intron (NR_027489, intron 3 of 8) Charlie29a|DNA|hAT-Charlie 4121 NM_001159379 64779 Hs.343627 NM_022764 ENSG00000103248 MTHFSD - methenyltetrahydrofolate synthetase domain containing protein-coding 110.571-4 chr14 97377416 97378167 + 0.285714 NA Intergenic Intergenic -81025 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 101.072-2 chr2 206755934 206756390 + 0.285714 NA intron (NM_001330225, intron 3 of 10) L1ME3Cz|LINE|L1 9166 NM_001330226 130752 Hs.147816 NM_206892 ENSG00000138400 MDH1B RP11-95H11 malate dehydrogenase 1B protein-coding 119.643 chr10 55455030 55455652 + 0.285714 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -143701 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 108-8 chr2 86317239 86317739 + 0.285714 NA intron (NM_001164730, intron 1 of 6) Charlie1a|DNA|hAT-Charlie 20137 NM_001164732 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 163.357-4 chr4 49118897 49120008 + 0.285714 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 132810 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 102.857-7 chr4 8597521 8597947 + 0.285714 NA intron (NM_003652, intron 1 of 9) intron (NM_003652, intron 1 of 9) 4969 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 102.071-9 chr7 15696848 15697388 + 0.285714 NA TTS (NR_110094) TTS (NR_110094) 8740 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 101.5-10 chr8 54238417 54238792 + 0.285714 NA Intergenic L1M5|LINE|L1 -92082 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 100.786 chr1 46811917 46812585 + 0.285714 NA intron (NM_000779, intron 3 of 11) intron (NM_000779, intron 3 of 11) 13205 NM_000779 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 115 chr12 59151472 59152007 + 0.285714 NA Intergenic Intergenic -231201 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 113.357 chr1 102256370 102256847 + 0.285714 NA Intergenic L1MC1|LINE|L1 -259374 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 111.572 chr12 18623299 18623827 + 0.285714 NA intron (NM_001288774, intron 31 of 32) L1MA7|LINE|L1 113946 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 100.786-8 chr5 32421891 32422369 + 0.285714 NA intron (NM_016107, intron 2 of 19) intron (NM_016107, intron 2 of 19) 22610 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 96.7858-3 chr2 52499409 52499818 + 0.285714 NA Intergenic Intergenic 128965 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 98.4286-3 chr14 48580884 48581528 + 0.285714 NA Intergenic Intergenic -786192 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 117.071-4 chr20 38575485 38575917 + 0.285714 NA 3' UTR (NM_001282918, exon 30 of 30) 3' UTR (NM_001282918, exon 30 of 30) -5496 NM_001018082 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 104.857 chr1 118398929 118399487 + 0.285714 NA Intergenic L1MEc|LINE|L1 -213980 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 97.9286-2 chr1 169593857 169594526 + 0.285714 NA intron (NM_003005, intron 13 of 16) intron (NM_003005, intron 13 of 16) -7660 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 113-4 chr2 197711436 197712146 + 0.285714 NA Intergenic Intergenic 6422 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 116.357-5 chr6 44833317 44833733 + 0.285714 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -281644 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 105.071-5 chr5 51491783 51492363 + 0.285714 NA Intergenic Intergenic 108625 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 120.786-3 chr20 49292009 49292619 + 0.285714 NA Intergenic Intergenic 11631 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 104.643 chr1 234005567 234005974 + 0.285714 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 101094 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 105.071-9 chr8 129231055 129231603 + 0.285714 NA intron (NR_033916, intron 1 of 2) ERVL-B4-int|LTR|ERVL 9911 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 101.428-5 chr6 62881506 62882108 + 0.285714 NA Intergenic SATR1|Satellite|Satellite 438170 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 115.286-8 chr8 131854285 131855047 + 0.285714 NA Intergenic L2a|LINE|L2 -49427 NM_001323553 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 105.428-4 chr9 87217286 87217818 + 0.285714 NA Intergenic Intergenic 68908 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 103.714-9 chr2 81131479 81132263 + 0.285714 NA Intergenic Intergenic 335075 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 99.7856 chr11 96221934 96222499 + 0.285714 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -119222 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 114.428 chr11 55994314 55994714 + 0.285714 NA exon (NM_003697, exon 1 of 1) exon (NM_003697, exon 1 of 1) 111 NM_003697 338674 Hs.553702 NM_003697 ENSG00000149133 OR5F1 OR11-10 olfactory receptor family 5 subfamily F member 1 protein-coding 123.143 chr10 60112130 60112906 + 0.285714 NA intron (NM_001204403, intron 27 of 43) intron (NM_001204403, intron 27 of 43) 28498 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 105.214-6 chr14 56512452 56512905 + 0.285714 NA Intergenic Intergenic -1653 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 113.786-8 chr8 70384906 70385752 + 0.285714 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 18061 NM_001321713 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 111 chr10 43926098 43926731 + 0.285714 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 14012 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 99.7857-2 chr2 60759730 60760366 + 0.285714 NA intron (NM_022894, intron 1 of 21) intron (NM_022894, intron 1 of 21) 3780 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 122.428-3 chr5 94618643 94619153 + 0.285714 NA promoter-TSS (NM_173665) promoter-TSS (NM_173665) 229 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 110.857-3 chr11 116358293 116359050 + 0.285714 NA Intergenic Intergenic -280751 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 99.8572-2 chr15 70609185 70609625 + 0.285714 NA Intergenic AluSz|SINE|Alu -6142 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 100.071-8 chr6 155826982 155827430 + 0.285714 NA Intergenic Intergenic -119591 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 113.571-7 chr7 20718917 20719334 + 0.285714 NA intron (NM_178559, intron 11 of 18) intron (NM_178559, intron 11 of 18) 67761 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 96.8571-2 chr10 21362534 21363172 + 0.285714 NA intron (NR_155751, intron 3 of 4) AluSz6|SINE|Alu 10097 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 114.429-8 chr5 101638124 101638787 + 0.285714 NA Intergenic Intergenic 657829 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 118.286-3 chr17 78421190 78421714 + 0.285714 NA intron (NR_110602, intron 8 of 8) intron (NR_110602, intron 8 of 8) 42803 NR_110601 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 98.1428-6 chr9 35819344 35819994 + 0.285714 NA intron (NR_052026, intron 5 of 7) AluSc8|SINE|Alu -4627 NM_032593 84681 Hs.70573 NM_032593 ENSG00000137133 HINT2 HIT-17 histidine triad nucleotide binding protein 2 protein-coding 98.5715-3 chr8 135111130 135111821 + 0.285714 NA Intergenic L1MA1|LINE|L1 -122656 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 98.7142 chr10 91773050 91773414 + 0.285714 NA Intergenic L1MEg1|LINE|L1 24964 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 120.428 chr1 10288113 10288711 + 0.285714 NA intron (NM_001365953, intron 13 of 20) intron (NM_001365953, intron 13 of 20) -10554 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 116-7 chr7 127004349 127004939 + 0.285714 NA intron (NM_001371085, intron 3 of 10) HAL1b|LINE|L1 53540 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 122.143-3 chr2 64453344 64453877 + 0.285714 NA promoter-TSS (NM_014181) promoter-TSS (NM_014181) -552 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 137.786 chr3 189471930 189472497 + 0.285714 NA Intergenic L1MB8|LINE|L1 -124533 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 98.7858-3 chr14 42677363 42677841 + 0.285714 NA Intergenic Intergenic 1070746 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 123-4 chr12 14803689 14804216 + 0.285714 NA promoter-TSS (NM_016312) promoter-TSS (NM_016312) 282 NM_175874 144608 Hs.659951 NM_175874 ENSG00000182993 C12orf60 - chromosome 12 open reading frame 60 protein-coding 115.714-11 chr22 18733047 18733637 + 0.285714 NA promoter-TSS (NR_136561) promoter-TSS (NR_136561) -572 NR_136561 642643 NR_136561 ENSG00000182824 FAM230E LINC01662 family with sequence similarity 230 member E ncRNA 100.857-11 chr22 38500588 38501003 + 0.285714 NA intron (NM_006386, intron 2 of 12) AluSq2|SINE|Alu 5516 NM_006386 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 106.714-2 chr1 232632590 232633098 + 0.285714 NA Intergenic Intergenic -85227 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 135.357-4 chr5 37661998 37662869 + 0.285714 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 172389 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 96.3572-2 chr18 35119286 35119910 + 0.285714 NA intron (NM_001143827, intron 5 of 7) intron (NM_001143827, intron 5 of 7) 78185 NM_001256420 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 130.571-4 chr7 133657378 133657886 + 0.285714 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 167256 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 107.714-10 chr3 52961876 52962569 + 0.285714 NA intron (NM_016329, intron 2 of 20) L1MC5a|LINE|L1 -64674 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 118.072-2 chr5 37855692 37856534 + 0.285714 NA intron (NR_103441, intron 1 of 3) L1M5|LINE|L1 15675 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 114.571-7 chr17 71135017 71135556 + 0.285714 NA intron (NR_104152, intron 2 of 3) MLT1C|LTR|ERVL-MaLR 66893 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 101.357-6 chr2 73349208 73349780 + 0.285714 NA Intergenic L1ME3A|LINE|L1 -36264 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 127.857-2 chr11 101659402 101659915 + 0.285714 NA Intergenic L1MA2|LINE|L1 -75651 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 133.214-2 chr14 37208523 37209151 + 0.285714 NA intron (NM_138731, intron 1 of 13) AluSz|SINE|Alu 10900 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 110-3 chr8 110564697 110565082 + 0.285714 NA Intergenic Intergenic 462544 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 109.286-2 chr17 59785195 59785886 + 0.285714 NA intron (NM_001329400, intron 5 of 9) AluSx1|SINE|Alu -55726 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 99.7143-3 chr8 88904756 88905177 + 0.285714 NA Intergenic L1MA1|LINE|L1 -577483 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 106.357-2 chr12 34190987 34191493 + 0.285714 NA Intergenic Intergenic 168744 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 111.571-2 chr14 52359934 52360687 + 0.285714 NA Intergenic L1MC5a|LINE|L1 45998 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 120.714-6 chr2 187030424 187031075 + 0.285714 NA Intergenic L1MA4A|LINE|L1 -181579 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 102-8 chr5 94324989 94325571 + 0.285714 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -213581 NM_001163418 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 107.143-16 chr6 47122760 47123366 + 0.285714 NA Intergenic HSMAR1|DNA|TcMar-Mariner -80731 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 175.571 chr10 41896828 41897605 + 0.285714 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 470829 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 100.857-5 chr10 68600902 68601300 + 0.285714 NA intron (NM_030625, intron 3 of 11) intron (NM_030625, intron 3 of 11) 40764 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 99.3572-2 chr17 75093765 75094311 + 0.285714 NA intron (NM_004695, intron 3 of 6) intron (NM_004695, intron 3 of 6) 6084 NM_004695 9121 Hs.592095 NM_004695 ENSG00000170190 SLC16A5 MCT5|MCT6 solute carrier family 16 member 5 protein-coding 98.2857-3 chr20 32541411 32542003 + 0.285714 NA intron (NM_001256798, intron 1 of 10) intron (NM_001256798, intron 1 of 10) 31748 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 110.857-7 chr2 160925206 160925881 + 0.285714 NA Intergenic Intergenic -211412 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 99.2856-2 chr22 41885449 41885971 + 0.285714 NA intron (NR_103834, intron 12 of 21) intron (NR_103834, intron 12 of 21) -15234 NR_029507 407039 NR_029507 ENSG00000207932 MIR33A MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a microRNA 33a ncRNA 98.4285 chr14 40592051 40592519 + 0.285714 NA Intergenic L1PA7|LINE|L1 -362426 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 102.5-2 chr6 100960051 100960481 + 0.285714 NA Intergenic MLT1A|LTR|ERVL-MaLR -78894 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 101.143-7 chr2 158487100 158487591 + 0.285714 NA intron (NM_001005476, intron 1 of 20) MIRb|SINE|MIR 30393 NM_001304969 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 116-2 chr14 42757365 42758117 + 0.285714 NA Intergenic Intergenic 1150885 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 159.429-2 chr12 10577420 10578215 + 0.285714 NA Intergenic L1MC2|LINE|L1 22018 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 104-2 chr11 62665711 62666679 + 0.285714 NA promoter-TSS (NR_104414) promoter-TSS (NR_104414) 773 NR_004390 692158 Hs.687390 NR_004390 ENSG00000206597 SNORA57 U99 small nucleolar RNA, H/ACA box 57 snoRNA 101.357-11 chr8 68189670 68190380 + 0.285714 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -140348 NM_001349479 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 107.357-10 chr2 23583546 23584049 + 0.285714 NA intron (NM_052920, intron 3 of 13) intron (NM_052920, intron 3 of 13) 198618 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 99.857 chr8 78047732 78048304 + 0.285714 NA Intergenic L1MA4|LINE|L1 -468322 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 122.786-2 chr13 32199293 32199954 + 0.285714 NA intron (NM_023037, intron 29 of 60) MLT1F|LTR|ERVL-MaLR 112331 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 105.429 chr10 122089393 122090253 + 0.285714 NA intron (NM_001291877, intron 5 of 19) intron (NM_001291877, intron 5 of 19) -23062 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 101.857-2 chr14 62810843 62811523 + 0.285714 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 234275 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 100.143-2 chr11 116071963 116072484 + 0.285714 NA Intergenic Intergenic -312023 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 110.857-10 chr6 34115721 34116227 + 0.285714 NA intron (NM_001256809, intron 1 of 8) intron (NM_001256809, intron 1 of 8) -5211 NM_001256812 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 118.5 chr1 10867943 10868659 + 0.285714 NA Intergenic MIRb|SINE|MIR -71655 NM_001079843 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 104.571 chr1 148318869 148319483 + 0.285714 NA Intergenic Intergenic 15378 NR_049810 100847044 NR_049810 ENSG00000283676 MIR5087 - microRNA 5087 ncRNA 118.357-4 chr9 98294727 98295476 + 0.285714 NA intron (NM_005458, intron 17 of 18) Tigger17a|DNA|TcMar-Tigger -39452 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 99.9285 chr3 133282187 133282568 + 0.285714 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -25256 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 122.286-6 chr6 38306677 38307139 + 0.285714 NA intron (NM_052893, intron 8 of 11) intron (NM_052893, intron 8 of 11) -174688 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 108.357-7 chr3 53897218 53897888 + 0.285714 NA Intergenic Intergenic -5694 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 138.428 chr1 143253674 143254544 + 0.285714 NA Intergenic (TGATTCCATTC)n|Simple_repeat|Simple_repeat 168483 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 97.5-8 chr8 27281321 27281708 + 0.285714 NA Intergenic Intergenic -23110 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 126-2 chr10 41808224 41808726 + 0.285714 NA Intergenic ALR/Alpha|Satellite|centr 559570 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 107.286-3 chr17 26865243 26865967 + 0.285714 NA Intergenic (GAATG)n|Satellite|Satellite 223636 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 106.143-4 chr2 6406528 6407058 + 0.285714 NA Intergenic L1ME1|LINE|L1 -31371 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 111.143-5 chr22 39200299 39201158 + 0.285714 NA Intergenic AluY|SINE|Alu 40181 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 97.9286-3 chr10 76190917 76191427 + 0.285714 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 408411 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 97.0713 chr7 136005203 136005544 + 0.285714 NA Intergenic Intergenic -28014 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 99.8571-7 chr3 40118770 40119649 + 0.214286 NA intron (NM_001284426, intron 1 of 14) L1PA4|LINE|L1 19198 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 104.429-3 chr2 205059188 205059963 + 0.214286 NA intron (NM_205863, intron 4 of 21) intron (NM_205863, intron 4 of 21) 514100 NM_001302769 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 112.286-11 chr2 63676107 63676692 + 0.214286 NA Intergenic L1MEg|LINE|L1 87248 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 96.4285-2 chr14 74005622 74006409 + 0.214286 NA intron (NM_001321986, intron 3 of 16) AluSp|SINE|Alu 13273 NM_001321984 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 96.6429-6 chr3 102337041 102337559 + 0.214286 NA Intergenic MER66B|LTR|ERV1 -97715 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 113.286-3 chr10 41910316 41911003 + 0.214286 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 457386 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 118.429 chr1 64382619 64383300 + 0.214286 NA Intergenic Intergenic -87170 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 97.6429-2 chr2 46246594 46247288 + 0.214286 NA Intergenic L1PA15|LINE|L1 -50466 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 103.929-4 chr10 77302150 77303098 + 0.214286 NA intron (NM_001271518, intron 1 of 27) LTR28C|LTR|ERV1 48137 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 103.714-10 chr20 8295455 8296294 + 0.214286 NA intron (NM_182734, intron 2 of 32) AluJo|SINE|Alu 47170 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 99.9286-2 chr2 43506562 43507372 + 0.214286 NA intron (NM_001083953, intron 23 of 37) intron (NM_001083953, intron 23 of 37) 89007 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 99.3571-3 chr4 175717011 175717640 + 0.214286 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 70351 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 103.214-3 chr10 27579533 27580104 + 0.214286 NA Intergenic Intergenic 75514 NM_021252 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 98.6429-3 chr21 14261974 14262807 + 0.214286 NA Intergenic L1ME4c|LINE|L1 -11409 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 98.5001-2 chr7 13461788 13462364 + 0.214286 NA Intergenic L2a|LINE|L2 524438 NM_001163151 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 96.9287-3 chr6 143687742 143688266 + 0.214286 NA intron (NM_001100165, intron 1 of 11) L2c|LINE|L2 10039 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 104.786-8 chr20 22099172 22099796 + 0.214286 NA Intergenic Intergenic 45394 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 98.2858-2 chr5 1530080 1530673 + 0.214286 NA Intergenic L1MEc|LINE|L1 -6416 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 103.071-12 chrUn_KI270544v1 1 918 + 0.214286 NA NA ALR/Alpha|Satellite|centr NA NA 100 chr1 103487412 103488235 + 0.214286 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 37688 NM_001347929 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 102.286-8 chr5 11775417 11776429 + 0.214286 NA intron (NM_001288717, intron 1 of 20) MLT1C|LTR|ERVL-MaLR 128523 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 98.9285-3 chr7 42566991 42567924 + 0.214286 NA Intergenic Intergenic 138990 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 98.9286 chr2 34131851 34132436 + 0.214286 NA intron (NR_126403, intron 4 of 5) MER57A-int|LTR|ERV1 64917 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 97.2143-4 chr7 44846379 44847103 + 0.214286 NA intron (NM_012412, intron 1 of 4) intron (NM_012412, intron 1 of 4) 1385 NM_201516 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 107.143-10 chr2 158200789 158201630 + 0.214286 NA intron (NM_138803, intron 11 of 13) intron (NM_138803, intron 11 of 13) 34559 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 105.429-8 chr20 36137107 36137883 + 0.214286 NA intron (NM_001258330, intron 3 of 20) AluJb|SINE|Alu -17245 NM_012156 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 97.6428-4 chr8 117351902 117352596 + 0.214286 NA Intergenic AluJr|SINE|Alu -168464 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 107.786-7 chr6 163534375 163535243 + 0.214286 NA intron (NM_206853, intron 3 of 6) intron (NM_206853, intron 3 of 6) 120091 NM_206853 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 101.5-8 chr5 117120394 117120868 + 0.214286 NA Intergenic L1MC4|LINE|L1 -294881 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 119.143-9 chr6 45395378 45396422 + 0.214286 NA intron (NM_001015051, intron 2 of 7) AluSz6|SINE|Alu -17966 NM_001350327 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 97-3 chr13 88012689 88013433 + 0.214286 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat -129806 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 108.214-5 chr3 50260231 50260741 + 0.214286 NA Intergenic CpG 6885 NR_110702 101928931 Hs.587216 NR_110702 ENSG00000232352 SEMA3B-AS1 - SEMA3B antisense RNA 1 (head to head) ncRNA 106.571-7 chr8 79508578 79509319 + 0.214286 NA Intergenic MER3|DNA|hAT-Charlie -102169 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 96.7858 chr1 74913655 74914186 + 0.214286 NA Intergenic THE1B-int|LTR|ERVL-MaLR -180512 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 104.714-5 chr2 130728918 130729724 + 0.214286 NA exon (NM_207364, exon 1 of 1) exon (NM_207364, exon 1 of 1) 251 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 106.929 chr11 33145207 33145897 + 0.214286 NA intron (NM_001326, intron 1 of 20) AluY|SINE|Alu 15928 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 97.0714-6 chr20 31237168 31237867 + 0.214286 NA Intergenic Intergenic -20147 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 97.7858-2 chr21 24639125 24639715 + 0.214286 NA Intergenic Intergenic -201130 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 97.2857-7 chr8 36895993 36896784 + 0.214286 NA intron (NM_001031836, intron 19 of 26) intron (NM_001031836, intron 19 of 26) 112014 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 133-5 chr4 104907367 104908086 + 0.214286 NA Intergenic L2b|LINE|L2 -238149 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 124.5 chr18 20938836 20939511 + 0.214286 NA Intergenic ALR/Alpha|Satellite|centr 172640 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding